Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012389
(1069 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538200.1| PREDICTED: similar to B-cell receptor-associate... 253 3e-67
Alignment gi|XP_853216.1| PREDICTED: similar to B-cell receptor-associate... 134 2e-31
Alignment gi|XP_533092.2| PREDICTED: similar to B-cell receptor-associate... 121 1e-27
>ref|XP_538200.1| PREDICTED: similar to B-cell receptor-associated protein 31
(BCR-associated protein Bap31) (p28 Bap31) (CDM protein)
(6C6-AG tumor-associated antigen) (DXS1357E) [Canis
familiaris].
Length = 246
Score = 253 bits (645), Expect = 3e-67
Identities = 142/228 (62%), Positives = 147/228 (64%)
Frame = +2
Query: 230 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 409
MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFF
Sbjct: 1 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILV 60
Query: 410 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 589
DA+REIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAG V
Sbjct: 61 LLVIDAVREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120
Query: 590 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 769
TLISQQATLLASN NDQLKKE EEE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKEAAAGGVKLDGKDAEEKVEEE 180
Query: 770 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLPRSTTACLE 913
NRS ++KQKLEKAE EA+AMRKQSEGL + LE
Sbjct: 181 NRSLKADLKKLKDELDINKQKLEKAEREAVAMRKQSEGLTKEYDRLLE 228
>ref|XP_853216.1| PREDICTED: similar to B-cell receptor-associated protein 31 [Canis
familiaris].
Length = 144
Score = 134 bits (336), Expect = 2e-31
Identities = 74/125 (59%), Positives = 78/125 (62%)
Frame = +2
Query: 335 FKSRLVELVVTYGNTFFXXXXXXXXXXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMK 514
F+ LVELVVTYGNTFF DA+REIRKYDDVTEKVNLQNNPGAVEHFHMK
Sbjct: 5 FQVCLVELVVTYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAVEHFHMK 64
Query: 515 LFRAQRNLYIAGXXXXXXXXXXXXVTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXND 694
LFRAQRNLY+AG VTLISQQATLL +N ND
Sbjct: 65 LFRAQRNLYVAGFSLLLSFLLRGLVTLISQQATLLVANEAFKKQAESASEAAKKYMEEND 124
Query: 695 QLKKE 709
QLKKE
Sbjct: 125 QLKKE 129
>ref|XP_533092.2| PREDICTED: similar to B-cell receptor-associated protein BAP29
isoform d [Canis familiaris].
Length = 293
Score = 121 bits (303), Expect = 1e-27
Identities = 75/222 (33%), Positives = 103/222 (46%), Gaps = 1/222 (0%)
Frame = +2
Query: 230 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 409
M+LQW AVATFLYAE+ +L+ C+PFI P+RWQKIF + + T+ N F
Sbjct: 51 MTLQWVAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFNVWGKIATFWNKAFLTIIILLI 110
Query: 410 XXXXDALREIRKYDDVTE-KVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 586
DA+RE+RKY + + L PGA EH MKLFR+QRNLYI+G
Sbjct: 111 VLFLDAVREVRKYSSIPAIEKGLTTRPGAYEHAQMKLFRSQRNLYISGFSLFFWLVLRRL 170
Query: 587 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 766
VTLI+Q A L++ N++LK+ E
Sbjct: 171 VTLITQLAKELSNKGVLKTQAENTNEAAKKFMEENERLKQ-----LLKSYVKEEEHILET 225
Query: 767 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLPR 892
EN+ + + L KA+ + + MR QSE L +
Sbjct: 226 ENKKLVEDQEKLKTELKKTSEALSKAQKDVMTMRMQSERLSK 267
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,627,390
Number of extensions: 903613
Number of successful extensions: 4051
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4042
Number of HSP's successfully gapped: 3
Length of query: 356
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 252
Effective length of database: 15,407,560
Effective search space: 3882705120
Effective search space used: 3882705120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012389
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012389
(1069 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014941.1| B-cell receptor-associated protein 31 [Bos t... 247 1e-65
Alignment gi|NP_001033164.1| B-cell receptor-associated protein 29 [Bos t... 117 2e-26
>ref|NP_001014941.1| B-cell receptor-associated protein 31 [Bos taurus].
Length = 245
Score = 247 bits (630), Expect = 1e-65
Identities = 142/228 (62%), Positives = 147/228 (64%)
Frame = +2
Query: 230 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 409
MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFF
Sbjct: 1 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILV 60
Query: 410 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 589
DA+REIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAG V
Sbjct: 61 LLVIDAVREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120
Query: 590 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 769
TLISQQATLLASN ND LKKE +EE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASDAAKKYMEENDLLKKE-AGGVTKLGGRDSEVKVQEE 179
Query: 770 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLPRSTTACLE 913
NRS V+KQKLEKAENEALAMRKQS+GL + LE
Sbjct: 180 NRSLKADLKRLKDELAVNKQKLEKAENEALAMRKQSKGLTKEYDRLLE 227
>ref|NP_001033164.1| B-cell receptor-associated protein 29 [Bos taurus].
Length = 240
Score = 117 bits (293), Expect = 2e-26
Identities = 74/222 (33%), Positives = 103/222 (46%), Gaps = 1/222 (0%)
Frame = +2
Query: 230 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 409
M+LQWTAVATFLYAE+ +L+ C+PFI P+RWQKIF + + ++ N F
Sbjct: 1 MTLQWTAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIASFWNKAFLTIIILLI 60
Query: 410 XXXXDALREIRKYDDV-TEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 586
DA+RE+RKY T + + + P A EH MKLFR+QRNLYI+G
Sbjct: 61 VLFLDAVREVRKYSSTHTIEKSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 587 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 766
VTLI+Q A L+ N++LK+ E
Sbjct: 121 VTLITQLAKELSHKGVLKHQAENINQAAKKFMEENERLKR-----LLKNYGKEEEHILEA 175
Query: 767 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLPR 892
EN+ + L KA+N+ + M+ QSE L +
Sbjct: 176 ENKKLEEDKEKLKTELKKASDALSKAQNDVMIMKMQSERLSK 217
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,108,084
Number of extensions: 877753
Number of successful extensions: 3765
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3736
Number of HSP's successfully gapped: 2
Length of query: 356
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 253
Effective length of database: 14,273,310
Effective search space: 3611147430
Effective search space used: 3611147430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012389
(1069 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135528.2| PREDICTED: b-cell receptor-associated protei... 259 2e-69
Alignment gi|XP_003357558.1| PREDICTED: b-cell receptor-associated protei... 116 2e-26
Alignment gi|XP_003357557.1| PREDICTED: b-cell receptor-associated protei... 116 2e-26
>ref|XP_003135528.2| PREDICTED: b-cell receptor-associated protein 31-like [Sus scrofa].
Length = 246
Score = 259 bits (661), Expect = 2e-69
Identities = 147/228 (64%), Positives = 148/228 (64%)
Frame = +2
Query: 230 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 409
MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFF
Sbjct: 1 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILV 60
Query: 410 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 589
DALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAG V
Sbjct: 61 LLVIDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120
Query: 590 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 769
TLISQQATLLASN NDQLKKE EEE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKEAAVGGVKLDGGDAGGKVEEE 180
Query: 770 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLPRSTTACLE 913
NRS VSKQKLEKAENEALAMRKQSEGL + LE
Sbjct: 181 NRSLKAELKRLKEELAVSKQKLEKAENEALAMRKQSEGLTKEYDRLLE 228
>ref|XP_003357558.1| PREDICTED: b-cell receptor-associated protein 29-like isoform 2
[Sus scrofa].
Length = 241
Score = 116 bits (291), Expect = 2e-26
Identities = 74/222 (33%), Positives = 102/222 (45%), Gaps = 1/222 (0%)
Frame = +2
Query: 230 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 409
M+LQW AVATFLYAE+ +L+ C+PFI P+RWQKIF + + T+ N F
Sbjct: 1 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAFLTIIVLLI 60
Query: 410 XXXXDALREIRKYDDV-TEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 586
DA+RE+RKY + + + P A EH MKLFR+QRNLYI+G
Sbjct: 61 VLFLDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 587 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 766
VTLI+Q A L++ N++LK+ EE
Sbjct: 121 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKR-----LLKNYGKEEDHILEE 175
Query: 767 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLPR 892
EN+ L KA+N+ + M+ QSE L +
Sbjct: 176 ENKKLVEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSK 217
>ref|XP_003357557.1| PREDICTED: b-cell receptor-associated protein 29-like isoform 1
[Sus scrofa].
Length = 241
Score = 116 bits (291), Expect = 2e-26
Identities = 74/222 (33%), Positives = 102/222 (45%), Gaps = 1/222 (0%)
Frame = +2
Query: 230 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 409
M+LQW AVATFLYAE+ +L+ C+PFI P+RWQKIF + + T+ N F
Sbjct: 1 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAFLTIIVLLI 60
Query: 410 XXXXDALREIRKYDDV-TEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 586
DA+RE+RKY + + + P A EH MKLFR+QRNLYI+G
Sbjct: 61 VLFLDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 587 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 766
VTLI+Q A L++ N++LK+ EE
Sbjct: 121 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKR-----LLKNYGKEEDHILEE 175
Query: 767 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLPR 892
EN+ L KA+N+ + M+ QSE L +
Sbjct: 176 ENKKLVEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSK 217
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,028,309
Number of extensions: 567147
Number of successful extensions: 2472
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2461
Number of HSP's successfully gapped: 3
Length of query: 356
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,854,232
Effective search space: 2266683392
Effective search space used: 2266683392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012389
(1069 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036190.2| B-cell receptor-associated protein 31 [Mus musc... 235 5e-62
Alignment gi|NP_001157562.1| B-cell receptor-associated protein 29 [Mus m... 113 3e-25
Alignment gi|NP_031556.1| B-cell receptor-associated protein 29 [Mus musc... 113 3e-25
>ref|NP_036190.2| B-cell receptor-associated protein 31 [Mus musculus].
Length = 245
Score = 235 bits (599), Expect = 5e-62
Identities = 135/228 (59%), Positives = 143/228 (62%)
Frame = +2
Query: 230 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 409
MSLQWT VATFLYAEVFAVLLLCIPFISPKRWQK+FKSRLVELVVTYGNTFF
Sbjct: 1 MSLQWTTVATFLYAEVFAVLLLCIPFISPKRWQKVFKSRLVELVVTYGNTFFVVLIVILV 60
Query: 410 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 589
DA+REI KYDDVTEKVNLQNNPGA+EHFHMKLFRAQRNLYIAG V
Sbjct: 61 LLVIDAVREILKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120
Query: 590 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 769
TLISQQATLLASN NDQLKK EE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAEDGDKLDIGNTEMKL-EE 179
Query: 770 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLPRSTTACLE 913
N+S +K+KLEKAENEALAM+KQSEGL + LE
Sbjct: 180 NKSLKNDLRKLKDELASTKKKLEKAENEALAMQKQSEGLTKEYDRLLE 227
>ref|NP_001157562.1| B-cell receptor-associated protein 29 [Mus musculus].
Length = 240
Score = 113 bits (282), Expect = 3e-25
Identities = 75/223 (33%), Positives = 103/223 (46%), Gaps = 2/223 (0%)
Frame = +2
Query: 230 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 409
M++QW AVA+FLYAE+ +LL C+PFI P+RWQKIF + + ++ N F
Sbjct: 1 MTIQWAAVASFLYAEIGLILLFCLPFIPPQRWQKIFSFSVWGKIASFWNKAFLTIIILLI 60
Query: 410 XXXXDALREIRKYD--DVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXX 583
DA+RE+RKY +V EK N P A EH MKLFR+QRNLYI+G
Sbjct: 61 ILFLDAVREVRKYSSTNVVEK-NSAIRPSAFEHTQMKLFRSQRNLYISGFSLFFWLVLRR 119
Query: 584 XVTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXE 763
VTLI+Q A +A+ N++LK E
Sbjct: 120 LVTLITQLAKEIANKGVLKIQAENTNKAAKKFMEENEKLK------LGLRNDNAEEHLLE 173
Query: 764 EENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLPR 892
EN+ + L KA+N+ + M+ QSE L +
Sbjct: 174 AENKKLIESKENLKTELKKASDALLKAQNDVMTMKIQSERLSK 216
>ref|NP_031556.1| B-cell receptor-associated protein 29 [Mus musculus].
Length = 240
Score = 113 bits (282), Expect = 3e-25
Identities = 75/223 (33%), Positives = 103/223 (46%), Gaps = 2/223 (0%)
Frame = +2
Query: 230 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 409
M++QW AVA+FLYAE+ +LL C+PFI P+RWQKIF + + ++ N F
Sbjct: 1 MTIQWAAVASFLYAEIGLILLFCLPFIPPQRWQKIFSFSVWGKIASFWNKAFLTIIILLI 60
Query: 410 XXXXDALREIRKYD--DVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXX 583
DA+RE+RKY +V EK N P A EH MKLFR+QRNLYI+G
Sbjct: 61 ILFLDAVREVRKYSSTNVVEK-NSAIRPSAFEHTQMKLFRSQRNLYISGFSLFFWLVLRR 119
Query: 584 XVTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXE 763
VTLI+Q A +A+ N++LK E
Sbjct: 120 LVTLITQLAKEIANKGVLKIQAENTNKAAKKFMEENEKLK------LGLRNDNAEEHLLE 173
Query: 764 EENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLPR 892
EN+ + L KA+N+ + M+ QSE L +
Sbjct: 174 AENKKLIESKENLKTELKKASDALLKAQNDVMTMKIQSERLSK 216
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,331,617
Number of extensions: 727524
Number of successful extensions: 3059
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3041
Number of HSP's successfully gapped: 3
Length of query: 356
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 254
Effective length of database: 12,553,887
Effective search space: 3188687298
Effective search space used: 3188687298
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012389
(1069 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001132929.1| B-cell receptor-associated protein 31 isofor... 258 5e-69
Alignment gi|NP_005736.3| B-cell receptor-associated protein 31 isoform b... 243 2e-64
Alignment gi|NP_001132913.1| B-cell receptor-associated protein 31 isofor... 243 2e-64
Alignment gi|NP_001008405.1| B-cell receptor-associated protein 29 isofor... 119 5e-27
Alignment gi|NP_061332.2| B-cell receptor-associated protein 29 isoform b... 119 5e-27
>ref|NP_001132929.1| B-cell receptor-associated protein 31 isoform a [Homo sapiens].
Length = 313
Score = 258 bits (660), Expect = 5e-69
Identities = 145/243 (59%), Positives = 153/243 (62%)
Frame = +2
Query: 185 GNRRASPCWKASSTRMSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVV 364
GN+ S C K SS RMSLQWTAVATFLYAEVF VLLLCIPFISPKRWQKIFKSRLVEL+V
Sbjct: 53 GNKLTSSCGKPSSNRMSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLV 112
Query: 365 TYGNTFFXXXXXXXXXXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYI 544
+YGNTFF DA+REIRKYDDVTEKVNLQNNPGA+EHFHMKLFRAQRNLYI
Sbjct: 113 SYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYI 172
Query: 545 AGXXXXXXXXXXXXVTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXX 724
AG VTLISQQATLLASN NDQLKK
Sbjct: 173 AGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDG 232
Query: 725 XXXXXXXXXXXXEEENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLPRSTTA 904
EEENRS +KQKLEKAEN+ LAMRKQSEGL +
Sbjct: 233 GKLDVGNAEVKLEEENRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDR 292
Query: 905 CLE 913
LE
Sbjct: 293 LLE 295
>ref|NP_005736.3| B-cell receptor-associated protein 31 isoform b [Homo sapiens].
Length = 246
Score = 243 bits (621), Expect = 2e-64
Identities = 137/228 (60%), Positives = 144/228 (63%)
Frame = +2
Query: 230 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 409
MSLQWTAVATFLYAEVF VLLLCIPFISPKRWQKIFKSRLVEL+V+YGNTFF
Sbjct: 1 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV 60
Query: 410 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 589
DA+REIRKYDDVTEKVNLQNNPGA+EHFHMKLFRAQRNLYIAG V
Sbjct: 61 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120
Query: 590 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 769
TLISQQATLLASN NDQLKK EEE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE 180
Query: 770 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLPRSTTACLE 913
NRS +KQKLEKAEN+ LAMRKQSEGL + LE
Sbjct: 181 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLE 228
>ref|NP_001132913.1| B-cell receptor-associated protein 31 isoform b [Homo sapiens].
Length = 246
Score = 243 bits (621), Expect = 2e-64
Identities = 137/228 (60%), Positives = 144/228 (63%)
Frame = +2
Query: 230 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 409
MSLQWTAVATFLYAEVF VLLLCIPFISPKRWQKIFKSRLVEL+V+YGNTFF
Sbjct: 1 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV 60
Query: 410 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 589
DA+REIRKYDDVTEKVNLQNNPGA+EHFHMKLFRAQRNLYIAG V
Sbjct: 61 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120
Query: 590 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 769
TLISQQATLLASN NDQLKK EEE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE 180
Query: 770 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLPRSTTACLE 913
NRS +KQKLEKAEN+ LAMRKQSEGL + LE
Sbjct: 181 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLE 228
>ref|NP_001008405.1| B-cell receptor-associated protein 29 isoform a [Homo sapiens].
Length = 348
Score = 119 bits (298), Expect = 5e-27
Identities = 75/222 (33%), Positives = 104/222 (46%), Gaps = 1/222 (0%)
Frame = +2
Query: 230 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 409
M+LQW AVATFLYAE+ +L+ C+PFI P+RWQKIF + + T+ N F
Sbjct: 1 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFNVWGKIATFWNKAFLTIIILLI 60
Query: 410 XXXXDALREIRKYDDV-TEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 586
DA+RE+RKY V T + + + P A EH MKLFR+QRNLYI+G
Sbjct: 61 VLFLDAVREVRKYSSVHTIEKSSTSRPDAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 587 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 766
VTLI+Q A L++ N++LK+ E
Sbjct: 121 VTLITQLAKELSNKGVLKTQAENTNKAAKKFMEENEKLKR-----ILKSHGKDEECVLEA 175
Query: 767 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLPR 892
EN+ + L KA+N+ + M+ QSE L +
Sbjct: 176 ENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMKMQSERLSK 217
>ref|NP_061332.2| B-cell receptor-associated protein 29 isoform b [Homo sapiens].
Length = 241
Score = 119 bits (298), Expect = 5e-27
Identities = 75/222 (33%), Positives = 104/222 (46%), Gaps = 1/222 (0%)
Frame = +2
Query: 230 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 409
M+LQW AVATFLYAE+ +L+ C+PFI P+RWQKIF + + T+ N F
Sbjct: 1 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFNVWGKIATFWNKAFLTIIILLI 60
Query: 410 XXXXDALREIRKYDDV-TEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 586
DA+RE+RKY V T + + + P A EH MKLFR+QRNLYI+G
Sbjct: 61 VLFLDAVREVRKYSSVHTIEKSSTSRPDAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 587 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 766
VTLI+Q A L++ N++LK+ E
Sbjct: 121 VTLITQLAKELSNKGVLKTQAENTNKAAKKFMEENEKLKR-----ILKSHGKDEECVLEA 175
Query: 767 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLPR 892
EN+ + L KA+N+ + M+ QSE L +
Sbjct: 176 ENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMKMQSERLSK 217
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,855,485
Number of extensions: 878128
Number of successful extensions: 3782
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3760
Number of HSP's successfully gapped: 5
Length of query: 356
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 252
Effective length of database: 14,868,908
Effective search space: 3746964816
Effective search space used: 3746964816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012389
(1069 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 361 5e-97
>Sscrofa_ChrX
|| Length = 144288218
Score = 361 bits (182), Expect = 5e-97
Identities = 185/186 (99%)
Strand = Plus / Minus
Query: 1 ttctgaggagatagtttttcgagaactttctccggcaggggctgtgagatgcttggtgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142048888 ttctgaggagatagtttttcgagaactttctccggcaggggctgtgagatgcttggtgga 142048829
Query: 61 gagctgccctcgcttttggccccagctcgcgtcctctaggagtcgctcttgcggcctttc 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 142048828 gagctgccctcgcttttggccccggctcgcgtcctctaggagtcgctcttgcggcctttc 142048769
Query: 121 tgaggcgcccggagaccttccgcccctcggaggccggcgcggtggtctctctcccgcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142048768 tgaggcgcccggagaccttccgcccctcggaggccggcgcggtggtctctctcccgcccc 142048709
Query: 181 ggaagg 186
||||||
Sbjct: 142048708 ggaagg 142048703
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 422 gatgctcttcgggagattcgcaagtacgacgatgtgaccgagaaggtgaacctgcagaac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142042033 gatgctcttcgggagattcgcaagtacgacgatgtgaccgagaaggtgaacctgcagaac 142041974
Query: 482 aatcccggggctgtggagcatttccacatgaagctcttccgggcccagaggaacctctac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142041973 aatcccggggctgtggagcatttccacatgaagctcttccgggcccagaggaacctctac 142041914
Query: 542 atcgccggcttctccttgctgctgtcctt 570
|||||||||||||||||||||||||||||
Sbjct: 142041913 atcgccggcttctccttgctgctgtcctt 142041885
Score = 274 bits (138), Expect = 9e-71
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 184 aggaaaccggcgcgcctctccctgttggaaggcttctagcaccaggatgagtctgcagtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142048323 aggaaaccggcgcgcctctccctgttggaaggcttctagcaccaggatgagtctgcagtg 142048264
Query: 244 gactgcagttgccaccttcctctatgcggaggtcttcgctgtgctgcttctctgcattcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142048263 gactgcagttgccaccttcctctatgcggaggtcttcgctgtgctgcttctctgcattcc 142048204
Query: 304 cttcatttctcccaaaag 321
||||||||||||||||||
Sbjct: 142048203 cttcatttctcccaaaag 142048186
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 571 cctgcttagacgcctggtaactctcatctcccagcaggccacgctgctggcctccaatga 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142024774 cctgcttagacgcctggtaactctcatctcccagcaggccacgctgctggcctccaatga 142024715
Query: 631 agcctttaaaaagcaggcagagagcgctagtgaagcagccaagaagtacatggaagagaa 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142024714 agcctttaaaaagcaggcagagagcgctagtgaagcagccaagaagtacatggaagagaa 142024655
Query: 691 cgaccagctgaagaagg 707
|||||||||||||||||
Sbjct: 142024654 cgaccagctgaagaagg 142024638
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 320 agatggcagaagattttcaagtcccgccttgtggagttggtagtgacctatggcaacacc 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142046550 agatggcagaagattttcaagtcccgccttgtggagttggtagtgacctatggcaacacc 142046491
Query: 380 ttctttgtggttctcatcgtcatcctcgtgctgctggtcattg 422
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142046490 ttctttgtggttctcatcgtcatcctcgtgctgctggtcattg 142046448
Score = 141 bits (71), Expect = 9e-31
Identities = 78/79 (98%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 831 agctggagaaggctgaaaacgaggctctggccatgcggaagcagtcggagggcctc-cca 889
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 142023025 agctggagaaggctgaaaacgaggctctggccatgcggaagcagtcggagggcctcacca 142022966
Query: 890 aggagtacgaccgcctgtt 908
|||||||||||||||||||
Sbjct: 142022965 aggagtacgaccgcctgtt 142022947
Score = 109 bits (55), Expect = 3e-21
Identities = 94/104 (90%), Gaps = 3/104 (2%)
Strand = Plus / Minus
Query: 969 ggcccctgttccntgccggtgnctggctgcttcgcgagagccaag-ctcccntcgcactt 1027
|||||||||||| |||| ||| |||||||||||||||||||| || ||||| ||||||
Sbjct: 142021849 ggcccctgttccctgcccgtggctggctgcttcgcgagagcccagcctccctcggcactt 142021790
Query: 1028 cggctcgctcccct-cgctgctgttt-cccgcgctgcttgcagt 1069
|||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 142021789 cggctcgctcccctccgctgctgtttccccgcgctgcttgcagt 142021746
Score = 85.7 bits (43), Expect = 5e-14
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 705 aggaagctgctgtgggcggagtcaagttagatggcggcgacgc 747
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142023810 aggaagctgctgtgggcggagtcaagttagatggcggcgacgc 142023768
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,675,205
Number of extensions: 150
Number of successful extensions: 150
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 8
Length of query: 1069
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1048
Effective length of database: 2,808,413,156
Effective search space: 2943216987488
Effective search space used: 2943216987488
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)