Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012395
(1375 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039858.1| hypothetical protein LOC535023 [Bos taurus]. 171 2e-42
Alignment gi|NP_001076957.1| downregulated in renal cell carcinoma [Bos t... 91 2e-18
>ref|NP_001039858.1| hypothetical protein LOC535023 [Bos taurus].
Length = 131
Score = 171 bits (432), Expect = 2e-42
Identities = 91/131 (69%), Positives = 91/131 (69%)
Frame = +1
Query: 241 MAEPDYIDDDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKR 420
MAEPDYIDDDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKR
Sbjct: 1 MAEPDYIDDDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKR 60
Query: 421 KRDQVIXXXXXXXXXXXSDXXXXXXXXXXXXXXXXXXXXXXXXXXXNAPEFVKVKGNLRR 600
KRDQVI SD N PEFVKVKGNLRR
Sbjct: 61 KRDQVIKQKEEEAQKKKSDLEIELLKRQQKLEQLELEKQKLQEEQENPPEFVKVKGNLRR 120
Query: 601 TGQEVAQAQES 633
TGQEVAQ QES
Sbjct: 121 TGQEVAQTQES 131
>ref|NP_001076957.1| downregulated in renal cell carcinoma [Bos taurus].
Length = 144
Score = 90.9 bits (224), Expect = 2e-18
Identities = 51/121 (42%), Positives = 70/121 (57%)
Frame = +1
Query: 238 IMAEPDYIDDDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEK 417
+MA P++ + NPELI+P+KL+NPVK SRNHQ++HRELLMN +RGL +KPELQ+V+E
Sbjct: 15 LMARPEH-REWNPELIKPKKLLNPVKASRNHQEMHRELLMNHRRGLGVDSKPELQRVLEH 73
Query: 418 RKRDQVIXXXXXXXXXXXSDXXXXXXXXXXXXXXXXXXXXXXXXXXXNAPEFVKVKGNLR 597
R+R+Q+I +APEF+KV+ NLR
Sbjct: 74 RRRNQLIKKKKEELEAKRLQ-CPFEQELLRRQQRLNQLEKPPEKEEDHAPEFIKVRENLR 132
Query: 598 R 600
R
Sbjct: 133 R 133
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,641,083
Number of extensions: 1263586
Number of successful extensions: 5667
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5632
Number of HSP's successfully gapped: 3
Length of query: 458
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 352
Effective length of database: 14,174,046
Effective search space: 4989264192
Effective search space used: 4989264192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012395
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012395
(1375 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848993.1| PREDICTED: hypothetical protein XP_843900 [Cani... 194 1e-49
Alignment gi|XP_849112.1| PREDICTED: similar to downregulated in renal ce... 93 5e-19
>ref|XP_848993.1| PREDICTED: hypothetical protein XP_843900 [Canis familiaris].
Length = 307
Score = 194 bits (494), Expect = 1e-49
Identities = 102/150 (68%), Positives = 106/150 (70%)
Frame = +1
Query: 184 DSPLEEPDLQDAYLCPRSIMAEPDYIDDDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQ 363
D P E+ DL+D YL PR+IMAEPDYI+DDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQ
Sbjct: 158 DGPSEDTDLKDTYLIPRNIMAEPDYIEDDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQ 217
Query: 364 KRGLAPQNKPELQKVMEKRKRDQVIXXXXXXXXXXXSDXXXXXXXXXXXXXXXXXXXXXX 543
KRGLAPQNKPELQKVMEKRKRDQVI SD
Sbjct: 218 KRGLAPQNKPELQKVMEKRKRDQVIKQKEEEAQKKKSDLEIELLKRQQKLEQQELEKQKL 277
Query: 544 XXXXXNAPEFVKVKGNLRRTGQEVAQAQES 633
NAPEFVKVKGNLRRTGQEVAQ QES
Sbjct: 278 QEEQENAPEFVKVKGNLRRTGQEVAQVQES 307
>ref|XP_849112.1| PREDICTED: similar to downregulated in renal cell carcinoma [Canis
familiaris].
Length = 172
Score = 93.2 bits (230), Expect = 5e-19
Identities = 53/122 (43%), Positives = 71/122 (58%)
Frame = +1
Query: 235 SIMAEPDYIDDDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVME 414
S+MA P+Y + NPELI+P+KL+NPVK SR+HQ+LHRELLMN +RGL +KPELQ+V+E
Sbjct: 42 SLMARPEY-REWNPELIKPKKLLNPVKASRSHQELHRELLMNHRRGLGVDSKPELQRVLE 100
Query: 415 KRKRDQVIXXXXXXXXXXXSDXXXXXXXXXXXXXXXXXXXXXXXXXXXNAPEFVKVKGNL 594
R+R+Q+I +APEF+KV+ NL
Sbjct: 101 HRRRNQLIKKKKEELEAKRLQ-CPFEQELLRRQQRLNQLENPPEKEEDHAPEFIKVRENL 159
Query: 595 RR 600
RR
Sbjct: 160 RR 161
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,895,202
Number of extensions: 1316239
Number of successful extensions: 6224
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6187
Number of HSP's successfully gapped: 3
Length of query: 458
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 352
Effective length of database: 15,340,888
Effective search space: 5399992576
Effective search space used: 5399992576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012395
(1375 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132327.1| PREDICTED: protein FAM107A-like [Sus scrofa]. 93 4e-19
Alignment gi|XP_003130796.1| PREDICTED: protein FAM107B-like [Sus scrofa]. 90 3e-18
>ref|XP_003132327.1| PREDICTED: protein FAM107A-like [Sus scrofa].
Length = 172
Score = 92.8 bits (229), Expect = 4e-19
Identities = 53/121 (43%), Positives = 70/121 (57%)
Frame = +1
Query: 238 IMAEPDYIDDDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEK 417
+MA P+Y + NPELI+P+KL+NPVK SR+HQ+LHRELLMN KRGL +KPELQ+V+E
Sbjct: 43 LMARPEY-REWNPELIKPKKLLNPVKASRSHQELHRELLMNHKRGLGVDSKPELQRVLEH 101
Query: 418 RKRDQVIXXXXXXXXXXXSDXXXXXXXXXXXXXXXXXXXXXXXXXXXNAPEFVKVKGNLR 597
R+R+Q+I +APEF+KV+ NLR
Sbjct: 102 RRRNQLIKKKKEELEAKRLQ-CPFEQELLRRQQRLNQLEKPPEKEEEHAPEFIKVRENLR 160
Query: 598 R 600
R
Sbjct: 161 R 161
>ref|XP_003130796.1| PREDICTED: protein FAM107B-like [Sus scrofa].
Length = 156
Score = 89.7 bits (221), Expect = 3e-18
Identities = 51/93 (54%), Positives = 54/93 (58%)
Frame = +1
Query: 355 MNQKRGLAPQNKPELQKVMEKRKRDQVIXXXXXXXXXXXSDXXXXXXXXXXXXXXXXXXX 534
++ +RGLAPQNKPELQKVMEKRKRDQVI SD
Sbjct: 64 LSSERGLAPQNKPELQKVMEKRKRDQVIKQKEEEAQKKKSDLEIELLKRQQKLEQLELEK 123
Query: 535 XXXXXXXXNAPEFVKVKGNLRRTGQEVAQAQES 633
NAPEFVKVKGNLRRTGQEVAQAQES
Sbjct: 124 QKLQEEQENAPEFVKVKGNLRRTGQEVAQAQES 156
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,106,459
Number of extensions: 817734
Number of successful extensions: 3856
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3772
Number of HSP's successfully gapped: 3
Length of query: 458
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 356
Effective length of database: 8,804,438
Effective search space: 3134379928
Effective search space used: 3134379928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012395
(1375 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079902.1| hypothetical protein LOC66540 [Mus musculus]. 169 4e-42
Alignment gi|NP_899010.1| downregulated in renal cell carcinoma [Mus musc... 90 4e-18
>ref|NP_079902.1| hypothetical protein LOC66540 [Mus musculus].
Length = 131
Score = 169 bits (429), Expect = 4e-42
Identities = 89/131 (67%), Positives = 93/131 (70%)
Frame = +1
Query: 241 MAEPDYIDDDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKR 420
MAEPDYI+DDNPELIRPQKL+NPVK+SRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKR
Sbjct: 1 MAEPDYIEDDNPELIRPQKLINPVKSSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKR 60
Query: 421 KRDQVIXXXXXXXXXXXSDXXXXXXXXXXXXXXXXXXXXXXXXXXXNAPEFVKVKGNLRR 600
+RDQVI SD NAPEFVKVKGNLRR
Sbjct: 61 RRDQVIKQKEEEAQKKKSDLEIELLKRQQKLEQLELEKQKLQEEQENAPEFVKVKGNLRR 120
Query: 601 TGQEVAQAQES 633
TGQEVAQAQES
Sbjct: 121 TGQEVAQAQES 131
>ref|NP_899010.1| downregulated in renal cell carcinoma [Mus musculus].
Length = 144
Score = 90.1 bits (222), Expect = 4e-18
Identities = 52/121 (42%), Positives = 69/121 (57%)
Frame = +1
Query: 238 IMAEPDYIDDDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEK 417
+MA P+Y + N ELI+P+KL+NPVK SR+HQ+LHRELLMN KRGL +KPELQ+V+E
Sbjct: 15 LMARPEY-REWNSELIKPKKLLNPVKASRSHQELHRELLMNHKRGLGMDSKPELQRVLEH 73
Query: 418 RKRDQVIXXXXXXXXXXXSDXXXXXXXXXXXXXXXXXXXXXXXXXXXNAPEFVKVKGNLR 597
R+R+Q+I +APEF+KV+ NLR
Sbjct: 74 RRRNQLIKKKEEELEAKRMQ-CPFKQELLRRQQRLNQLENPPQRDEDHAPEFIKVRENLR 132
Query: 598 R 600
R
Sbjct: 133 R 133
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,138,599
Number of extensions: 1047138
Number of successful extensions: 4317
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4290
Number of HSP's successfully gapped: 3
Length of query: 458
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 353
Effective length of database: 12,463,779
Effective search space: 4399713987
Effective search space used: 4399713987
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012395
(1375 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_113641.2| hypothetical protein LOC83641 [Homo sapiens]. 194 2e-49
Alignment gi|NP_001070246.1| downregulated in renal cell carcinoma [Homo ... 93 7e-19
Alignment gi|NP_009108.1| downregulated in renal cell carcinoma [Homo sap... 93 7e-19
>ref|NP_113641.2| hypothetical protein LOC83641 [Homo sapiens].
Length = 306
Score = 194 bits (493), Expect = 2e-49
Identities = 108/179 (60%), Positives = 115/179 (64%), Gaps = 6/179 (3%)
Frame = +1
Query: 115 PGASVDARSERREGRRAPLCAR------RDSPLEEPDLQDAYLCPRSIMAEPDYIDDDNP 276
P S+ + E R P C DSP E+ D +D+YL RSIMAEPDYI+DDNP
Sbjct: 128 PRPSIIDTPKEEEFREEPKCLELEQKMTSDSPPEDIDHKDSYLITRSIMAEPDYIEDDNP 187
Query: 277 ELIRPQKLVNPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIXXXXXX 456
ELIRPQKL+NPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVI
Sbjct: 188 ELIRPQKLINPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIKQKEEE 247
Query: 457 XXXXXSDXXXXXXXXXXXXXXXXXXXXXXXXXXXNAPEFVKVKGNLRRTGQEVAQAQES 633
SD NAPEFVKVKGNLRRTGQEVAQAQES
Sbjct: 248 AQKKKSDLEIELLKRQQKLEQLELEKQKLQEEQENAPEFVKVKGNLRRTGQEVAQAQES 306
>ref|NP_001070246.1| downregulated in renal cell carcinoma [Homo sapiens].
Length = 144
Score = 92.8 bits (229), Expect = 7e-19
Identities = 53/131 (40%), Positives = 74/131 (56%)
Frame = +1
Query: 238 IMAEPDYIDDDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEK 417
+MA P+Y + NPELI+P+KL+NPVK SR+HQ+LHRELLMN +RGL +KPELQ+V+E
Sbjct: 15 LMARPEY-REWNPELIKPKKLLNPVKASRSHQELHRELLMNHRRGLGVDSKPELQRVLEH 73
Query: 418 RKRDQVIXXXXXXXXXXXSDXXXXXXXXXXXXXXXXXXXXXXXXXXXNAPEFVKVKGNLR 597
R+R+Q+I +APEF+KV+ NLR
Sbjct: 74 RRRNQLIKKKKEELEAKRLQ-CPFEQELLRRQQRLNQLEKPPEKEEDHAPEFIKVRENLR 132
Query: 598 RTGQEVAQAQE 630
R ++ +E
Sbjct: 133 RIATLTSEERE 143
>ref|NP_009108.1| downregulated in renal cell carcinoma [Homo sapiens].
Length = 144
Score = 92.8 bits (229), Expect = 7e-19
Identities = 53/131 (40%), Positives = 74/131 (56%)
Frame = +1
Query: 238 IMAEPDYIDDDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEK 417
+MA P+Y + NPELI+P+KL+NPVK SR+HQ+LHRELLMN +RGL +KPELQ+V+E
Sbjct: 15 LMARPEY-REWNPELIKPKKLLNPVKASRSHQELHRELLMNHRRGLGVDSKPELQRVLEH 73
Query: 418 RKRDQVIXXXXXXXXXXXSDXXXXXXXXXXXXXXXXXXXXXXXXXXXNAPEFVKVKGNLR 597
R+R+Q+I +APEF+KV+ NLR
Sbjct: 74 RRRNQLIKKKKEELEAKRLQ-CPFEQELLRRQQRLNQLEKPPEKEEDHAPEFIKVRENLR 132
Query: 598 RTGQEVAQAQE 630
R ++ +E
Sbjct: 133 RIATLTSEERE 143
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,642,280
Number of extensions: 1268936
Number of successful extensions: 5585
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5558
Number of HSP's successfully gapped: 5
Length of query: 458
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 352
Effective length of database: 14,802,980
Effective search space: 5210648960
Effective search space used: 5210648960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012395
(1375 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 1522 0.0
>Sscrofa_Chr10
|| Length = 79102373
Score = 1522 bits (768), Expect = 0.0
Identities = 830/858 (96%)
Strand = Plus / Plus
Query: 518 agcttgaacttgagaagcagaaattgcaagaagagcaagaaaacgctcccgagtttgtga 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51941696 agcttgaacttgagaagcagaaattgcaagaagagcaagaaaacgctcccgagtttgtga 51941755
Query: 578 aggttaaaggcaacctcagaagaacaggccaagaagtggcccaagcccaagagtcgtagg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51941756 aggttaaaggcaacctcagaagaacaggccaagaagtggcccaagcccaagagtcgtagg 51941815
Query: 638 ccaggctgcagagaccgcgcccctggcccatcgcacacagaaatcgtgtgcnnnnnnncc 697
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 51941816 ccaggctgcagagaccgcgcccctggcccatcgcacacagaaatcgtgtgcgggggggcc 51941875
Query: 698 tccccagcgcttnnnnnnnggggccagatcccctgagagaatcccagccagcagagaact 757
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 51941876 tccccagcgcttcccccccggggccagatcccctgagagaatcccagccagcagagaact 51941935
Query: 758 gttcctttaaaaaggatttggttttggttttcctaccacctgggtggataaagaacctgt 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51941936 gttcctttaaaaaggatttggttttggttttcctaccacctgggtggataaagaacctgt 51941995
Query: 818 gacagttgcagttcctatgcgccaaacgaaggacgtccaccagcacttaagttgggataa 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51941996 gacagttgcagttcctatgcgccaaacgaaggacgtccaccagcacttaagttgggataa 51942055
Query: 878 tgaacccgtgttcaaagacttnnnnnnnncgacgcccacaagaaggagaagcagaacagg 937
||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 51942056 tgaacccgtgttcaaagacttaaaaaaaacgacgccaacaagaaggagaagcagaacagg 51942115
Query: 938 aagaggatactgggagaaatcctggagcgttgcactgcttggtttttctctcagtccaag 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51942116 aagaggatactgggagaaatcctggagcgttgcactgcttggtttttctctcagtccaag 51942175
Query: 998 tgtagtggggcaccagagccttttctctttgaaaacctaaagaaaatgtatttcgtcctt 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51942176 tgtagtggggcaccagagccttttctctttgaaaacctaaagaaaatgtatttcgtcctt 51942235
Query: 1058 cctttagttgtctgtccagtagtttagattgcatagacaggccttagatctgttacatcc 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51942236 cctttagttgtctgtccagtagtttagattgcatagacaggccttagatctgttacatcc 51942295
Query: 1118 accgtttgtaaagtgtcttcttcctttacgctttcacccaagtgttagacaacatcagaa 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51942296 accgtttgtaaagtgtcttcttcctttacgctttcacccaagtgttagacaacatcagaa 51942355
Query: 1178 aaggttaatacttatggtaaacacagctcttactttgttagccattgagattcagaaata 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51942356 aaggttaatacttatggtaaacacagctcttactttgttagccattgagattcagaaata 51942415
Query: 1238 gggtgagacggttttcaaatatggaaacaaatatgtaaacatctgtctcgatcttatttt 1297
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51942416 gggtgagacggtttcaaaatatggaaacaaatatgtaaacatctgtctcgatcttatttt 51942475
Query: 1298 cattcctgctggtcctctgatgcttcctggtgaacctctgctgagaaagtacgtcatgta 1357
||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct: 51942476 cattcctgctggtcctctgatgcttcctggtgaccttctgctgagaaggtacgtcatgta 51942535
Query: 1358 aatccatgtattgctttg 1375
||||||||||||||||||
Sbjct: 51942536 aatccatgtattgctttg 51942553
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 183 agacagcccgctggaggagcctgacctgcaggacgcttacctctgccccaggagcatcat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51885032 agacagcccgctggaggagcctgacctgcaggacgcttacctctgccccaggagcatcat 51884973
Query: 243 ggccgagcccgactacatagacgatgacaatcccgagctcatcaggccccagaaactagt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51884972 ggccgagcccgactacatagacgatgacaatcccgagctcatcaggccccagaaactagt 51884913
Query: 303 caatcccgtcaaaacctcccggaaccaccaagatctgcacagagaacttctcatgaatca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51884912 caatcccgtcaaaacctcccggaaccaccaagatctgcacagagaacttctcatgaatca 51884853
Query: 363 aaaaagg 369
|||||||
Sbjct: 51884852 aaaaagg 51884846
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 367 aggggtcttgcccctcagaataagcctgaactgcagaaagtgatggaaaagagaaaacga 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51940543 aggggtcttgcccctcagaataagcctgaactgcagaaagtgatggaaaagagaaaacga 51940602
Query: 427 gatcaagtcataaagcagaaggaagaggaagcacaaaagaagaaatctgacctggaaata 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51940603 gatcaagtcataaagcagaaggaagaggaagcacaaaagaagaaatctgacctggaaata 51940662
Query: 487 gaactattaaagcggcagcagaagttggagcag 519
|||||||||||||||||||||||||||||||||
Sbjct: 51940663 gaactattaaagcggcagcagaagttggagcag 51940695
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 138 gagcgagcgccgggaagggcgccgcgcgcctttgtgcgcgcgcagag 184
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51863169 gagcgagcgccgggaagggcgccgcgcgcctttgtgcgcgcgcagag 51863215
Score = 75.8 bits (38), Expect = 6e-11
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 gcttaattcggacgcgcggggccgccgggtgtgaaaga 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 51863032 gcttaattcggacgcgcggggccgccgggtgtgaaaga 51863069
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,291,093
Number of extensions: 313
Number of successful extensions: 313
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 6
Length of query: 1375
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1354
Effective length of database: 2,808,413,156
Effective search space: 3802591413224
Effective search space used: 3802591413224
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)