Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012399
(1288 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003321.1| dolichyl-diphosphooligosaccharide--protein g... 629 0.0
>ref|NP_001003321.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa
subunit precursor [Canis lupus familiaris].
Length = 445
Score = 629 bits (1623), Expect(2) = 0.0
Identities = 314/326 (96%), Positives = 319/326 (97%)
Frame = +3
Query: 237 RTLVLLDNLNLRETHSLFFRSLKDRGFVLTFKTADDPSLSLIKYGEFLYDNLIVFSPSVE 416
RTLVLLDNLNLRETHSLFFRSLKDR F LTFKTADDPSLSLIKYGEFLYDNLI+FSPSVE
Sbjct: 35 RTLVLLDNLNLRETHSLFFRSLKDRAFELTFKTADDPSLSLIKYGEFLYDNLIIFSPSVE 94
Query: 417 DFGGNINVETISTFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS 596
DFGGNINVETISTFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS
Sbjct: 95 DFGGNINVETISTFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS 154
Query: 597 DLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF 776
DLGQHTLIVAD ENLLKAPTIVG+SSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF
Sbjct: 155 DLGQHTLIVADPENLLKAPTIVGRSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF 214
Query: 777 PDKPITQYPHAVGKNTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKATPGSQRYPQ 956
PDKPITQYPHAVGKNTLLIAGLQARNNARV+FSGSLDFFSDAFFNSAVQKA PGSQRY Q
Sbjct: 215 PDKPITQYPHAVGKNTLLIAGLQARNNARVVFSGSLDFFSDAFFNSAVQKAAPGSQRYSQ 274
Query: 957 TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGEKAPPNAYTVTDLVEYSIVIEQLSEGRW 1136
TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGE APPNAYTVTDLVEYSIVIEQLS GRW
Sbjct: 275 TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGETAPPNAYTVTDLVEYSIVIEQLSNGRW 334
Query: 1137 VPFDGDDIQLEFVRIDPFVRTFLEKE 1214
VPFDGDDIQLEFVRIDPFVRTFL+K+
Sbjct: 335 VPFDGDDIQLEFVRIDPFVRTFLKKK 360
Score = 55.8 bits (133), Expect(2) = 0.0
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = +1
Query: 1204 LKRKGGKYSVQFKLPDVYGVVQFKGDYN 1287
LK+KGGKYSVQFKLPDVYGV QFK DYN
Sbjct: 357 LKKKGGKYSVQFKLPDVYGVFQFKVDYN 384
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,227,756
Number of extensions: 1443010
Number of successful extensions: 5486
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5464
Number of HSP's successfully gapped: 2
Length of query: 429
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 323
Effective length of database: 15,340,888
Effective search space: 4955106824
Effective search space used: 4955106824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012399
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012399
(1288 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094543.1| dolichyl-diphosphooligosaccharide--protein g... 633 0.0
>ref|NP_001094543.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa
subunit precursor [Bos taurus].
Length = 439
Score = 633 bits (1632), Expect(2) = 0.0
Identities = 315/326 (96%), Positives = 321/326 (98%)
Frame = +3
Query: 237 RTLVLLDNLNLRETHSLFFRSLKDRGFVLTFKTADDPSLSLIKYGEFLYDNLIVFSPSVE 416
RTLVLLDNLNLRETHSLFFRSLKDRGFVLTFKTADDPSLSLIKYGEFLYDNLI+FSPSVE
Sbjct: 29 RTLVLLDNLNLRETHSLFFRSLKDRGFVLTFKTADDPSLSLIKYGEFLYDNLIIFSPSVE 88
Query: 417 DFGGNINVETISTFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS 596
DFGGNINVETIS FIDGGGSVLVAA SDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS
Sbjct: 89 DFGGNINVETISAFIDGGGSVLVAAGSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS 148
Query: 597 DLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF 776
DLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF
Sbjct: 149 DLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF 208
Query: 777 PDKPITQYPHAVGKNTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKATPGSQRYPQ 956
PDKPITQYPHAVGKNTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKA PGSQRY Q
Sbjct: 209 PDKPITQYPHAVGKNTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKAAPGSQRYSQ 268
Query: 957 TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGEKAPPNAYTVTDLVEYSIVIEQLSEGRW 1136
TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGE APPNAYTVTDLVEYSIVIEQLS+G+W
Sbjct: 269 TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGETAPPNAYTVTDLVEYSIVIEQLSDGKW 328
Query: 1137 VPFDGDDIQLEFVRIDPFVRTFLEKE 1214
VPFDGDDIQLEFVRIDPFVRTFL+++
Sbjct: 329 VPFDGDDIQLEFVRIDPFVRTFLKRK 354
Score = 57.0 bits (136), Expect(2) = 0.0
Identities = 26/28 (92%), Positives = 26/28 (92%)
Frame = +1
Query: 1204 LKRKGGKYSVQFKLPDVYGVVQFKGDYN 1287
LKRKGGKYSVQFKLPDVYGV QFK DYN
Sbjct: 351 LKRKGGKYSVQFKLPDVYGVFQFKVDYN 378
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,862,292
Number of extensions: 1392472
Number of successful extensions: 5261
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5234
Number of HSP's successfully gapped: 2
Length of query: 429
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 324
Effective length of database: 14,207,134
Effective search space: 4603111416
Effective search space used: 4603111416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012399
(1288 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999353.1| dolichyl-diphosphooligosaccharide--protein glyc... 644 0.0
>ref|NP_999353.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa
subunit precursor [Sus scrofa].
Length = 439
Score = 644 bits (1661), Expect(2) = 0.0
Identities = 322/326 (98%), Positives = 325/326 (99%)
Frame = +3
Query: 237 RTLVLLDNLNLRETHSLFFRSLKDRGFVLTFKTADDPSLSLIKYGEFLYDNLIVFSPSVE 416
RTLVLLDNLNLRETHSLFFRSLKDRGFVLTFKTADDPSLSLIKYGEFLYDNLIVFSPSVE
Sbjct: 29 RTLVLLDNLNLRETHSLFFRSLKDRGFVLTFKTADDPSLSLIKYGEFLYDNLIVFSPSVE 88
Query: 417 DFGGNINVETISTFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS 596
DFGGNINVETISTFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS
Sbjct: 89 DFGGNINVETISTFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS 148
Query: 597 DLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF 776
DL QHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF
Sbjct: 149 DLAQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF 208
Query: 777 PDKPITQYPHAVGKNTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKATPGSQRYPQ 956
PDKPITQYPHAVGKNTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKATPGSQRYPQ
Sbjct: 209 PDKPITQYPHAVGKNTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKATPGSQRYPQ 268
Query: 957 TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGEKAPPNAYTVTDLVEYSIVIEQLSEGRW 1136
TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGEKAPPNAYTVTDLVEYSIVIEQLSEGRW
Sbjct: 269 TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGEKAPPNAYTVTDLVEYSIVIEQLSEGRW 328
Query: 1137 VPFDGDDIQLEFVRIDPFVRTFLEKE 1214
VPFDGDDIQLEFVRIDPFVRTFL+++
Sbjct: 329 VPFDGDDIQLEFVRIDPFVRTFLKRK 354
Score = 55.5 bits (132), Expect(2) = 0.0
Identities = 25/28 (89%), Positives = 25/28 (89%)
Frame = +1
Query: 1204 LKRKGGKYSVQFKLPDVYGVVQFKGDYN 1287
LKRKGGKYSVQFK PDVYGV QFK DYN
Sbjct: 351 LKRKGGKYSVQFKFPDVYGVFQFKVDYN 378
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,554,758
Number of extensions: 901126
Number of successful extensions: 3458
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3446
Number of HSP's successfully gapped: 2
Length of query: 429
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 327
Effective length of database: 8,804,438
Effective search space: 2879051226
Effective search space used: 2879051226
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012399
(1288 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003086447.1| PREDICTED: dolichyl-diphosphooligosaccharide... 629 0.0
Alignment gi|NP_031864.2| dolichyl-diphosphooligosaccharide--protein glyc... 628 0.0
Alignment gi|XP_003086448.1| PREDICTED: dolichyl-diphosphooligosaccharide... 620 0.0
>ref|XP_003086447.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein
glycosyltransferase 48 kDa subunit-like isoform 1 [Mus
musculus].
Length = 441
Score = 629 bits (1621), Expect(2) = 0.0
Identities = 312/326 (95%), Positives = 321/326 (98%)
Frame = +3
Query: 237 RTLVLLDNLNLRETHSLFFRSLKDRGFVLTFKTADDPSLSLIKYGEFLYDNLIVFSPSVE 416
RTLVLLDNLN+R+THSLFFRSLKDRGF LTFKTADDPSLSLIKYGEFLYDNLI+FSPSVE
Sbjct: 31 RTLVLLDNLNVRDTHSLFFRSLKDRGFELTFKTADDPSLSLIKYGEFLYDNLIIFSPSVE 90
Query: 417 DFGGNINVETISTFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS 596
DFGGNINVETIS FIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS
Sbjct: 91 DFGGNINVETISAFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS 150
Query: 597 DLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF 776
DLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF
Sbjct: 151 DLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF 210
Query: 777 PDKPITQYPHAVGKNTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKATPGSQRYPQ 956
PDKPITQYPHAVG+NTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKATPG+QRY Q
Sbjct: 211 PDKPITQYPHAVGRNTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKATPGAQRYSQ 270
Query: 957 TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGEKAPPNAYTVTDLVEYSIVIEQLSEGRW 1136
TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGE APPNAYTVTDLVEYSIVIEQLS G+W
Sbjct: 271 TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGEMAPPNAYTVTDLVEYSIVIEQLSNGKW 330
Query: 1137 VPFDGDDIQLEFVRIDPFVRTFLEKE 1214
VPFDGDDIQLEFVRIDPFVRTFL+++
Sbjct: 331 VPFDGDDIQLEFVRIDPFVRTFLKRK 356
Score = 57.0 bits (136), Expect(2) = 0.0
Identities = 26/28 (92%), Positives = 26/28 (92%)
Frame = +1
Query: 1204 LKRKGGKYSVQFKLPDVYGVVQFKGDYN 1287
LKRKGGKYSVQFKLPDVYGV QFK DYN
Sbjct: 353 LKRKGGKYSVQFKLPDVYGVFQFKVDYN 380
>ref|NP_031864.2| dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa
subunit precursor [Mus musculus].
Length = 441
Score = 628 bits (1620), Expect(2) = 0.0
Identities = 311/326 (95%), Positives = 321/326 (98%)
Frame = +3
Query: 237 RTLVLLDNLNLRETHSLFFRSLKDRGFVLTFKTADDPSLSLIKYGEFLYDNLIVFSPSVE 416
RTLVLLDNLN+R+THSLFFRSLKDRGF LTFKTADDPSLSLIKYGEFLYDNLI+FSPSVE
Sbjct: 31 RTLVLLDNLNVRDTHSLFFRSLKDRGFELTFKTADDPSLSLIKYGEFLYDNLIIFSPSVE 90
Query: 417 DFGGNINVETISTFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS 596
DFGGNINVETIS FIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS
Sbjct: 91 DFGGNINVETISAFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS 150
Query: 597 DLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF 776
DLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF
Sbjct: 151 DLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF 210
Query: 777 PDKPITQYPHAVGKNTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKATPGSQRYPQ 956
PDKPITQYPHAVG+NTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKATPG+QRY Q
Sbjct: 211 PDKPITQYPHAVGRNTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKATPGAQRYSQ 270
Query: 957 TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGEKAPPNAYTVTDLVEYSIVIEQLSEGRW 1136
TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGE APPNAYTVTDLVEYSI+IEQLS G+W
Sbjct: 271 TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGEMAPPNAYTVTDLVEYSIIIEQLSNGKW 330
Query: 1137 VPFDGDDIQLEFVRIDPFVRTFLEKE 1214
VPFDGDDIQLEFVRIDPFVRTFL+++
Sbjct: 331 VPFDGDDIQLEFVRIDPFVRTFLKRK 356
Score = 57.0 bits (136), Expect(2) = 0.0
Identities = 26/28 (92%), Positives = 26/28 (92%)
Frame = +1
Query: 1204 LKRKGGKYSVQFKLPDVYGVVQFKGDYN 1287
LKRKGGKYSVQFKLPDVYGV QFK DYN
Sbjct: 353 LKRKGGKYSVQFKLPDVYGVFQFKVDYN 380
>ref|XP_003086448.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein
glycosyltransferase 48 kDa subunit-like isoform 2 [Mus
musculus].
Length = 441
Score = 620 bits (1598), Expect(2) = 0.0
Identities = 310/326 (95%), Positives = 319/326 (97%)
Frame = +3
Query: 237 RTLVLLDNLNLRETHSLFFRSLKDRGFVLTFKTADDPSLSLIKYGEFLYDNLIVFSPSVE 416
RTLVLLDNLN+R+THSLFFRSLKDRGF LTFKTADDPSLSLIKYGEFLYDNLI+FSPSVE
Sbjct: 31 RTLVLLDNLNVRDTHSLFFRSLKDRGFELTFKTADDPSLSLIKYGEFLYDNLIIFSPSVE 90
Query: 417 DFGGNINVETISTFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS 596
DFGGNINVETIS FIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS
Sbjct: 91 DFGGNINVETISAFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVS 150
Query: 597 DLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF 776
DLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF
Sbjct: 151 DLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF 210
Query: 777 PDKPITQYPHAVGKNTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKATPGSQRYPQ 956
PDKPITQYPHAVG+NTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKATPG+ Y Q
Sbjct: 211 PDKPITQYPHAVGRNTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKATPGA--YSQ 268
Query: 957 TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGEKAPPNAYTVTDLVEYSIVIEQLSEGRW 1136
TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGE APPNAYTVTDLVEYSIVIEQLS G+W
Sbjct: 269 TGNYELAVALSRWVFKEEGVLRVGPVSHHRVGEMAPPNAYTVTDLVEYSIVIEQLSNGKW 328
Query: 1137 VPFDGDDIQLEFVRIDPFVRTFLEKE 1214
VPFDGDDIQLEFVRIDPFVRTFL+++
Sbjct: 329 VPFDGDDIQLEFVRIDPFVRTFLKRK 354
Score = 52.0 bits (123), Expect(2) = 0.0
Identities = 26/30 (86%), Positives = 26/30 (86%), Gaps = 2/30 (6%)
Frame = +1
Query: 1204 LKRKG--GKYSVQFKLPDVYGVVQFKGDYN 1287
LKRKG GKYSVQFKLPDVYGV QFK DYN
Sbjct: 351 LKRKGVCGKYSVQFKLPDVYGVFQFKVDYN 380
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,165,688
Number of extensions: 1170329
Number of successful extensions: 4156
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4135
Number of HSP's successfully gapped: 6
Length of query: 429
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 325
Effective length of database: 12,493,815
Effective search space: 4060489875
Effective search space used: 4060489875
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012399
(1288 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005207.2| dolichyl-diphosphooligosaccharide--protein glyc... 634 0.0
>ref|NP_005207.2| dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa
subunit precursor [Homo sapiens].
Length = 456
Score = 634 bits (1635), Expect(2) = 0.0
Identities = 320/362 (88%), Positives = 328/362 (90%)
Frame = +3
Query: 129 GFFGRSRKMEXXXXXXXXXXXXXXXXXXXXXXXXXXRTLVLLDNLNLRETHSLFFRSLKD 308
G FGR RKME RTLVLLDNLN+RETHSLFFRSLKD
Sbjct: 10 GSFGRRRKMEPSTAARAWALFWLLLPLLGAVCASGPRTLVLLDNLNVRETHSLFFRSLKD 69
Query: 309 RGFVLTFKTADDPSLSLIKYGEFLYDNLIVFSPSVEDFGGNINVETISTFIDGGGSVLVA 488
RGF LTFKTADDPSLSLIKYGEFLYDNLI+FSPSVEDFGGNINVETIS FIDGGGSVLVA
Sbjct: 70 RGFELTFKTADDPSLSLIKYGEFLYDNLIIFSPSVEDFGGNINVETISAFIDGGGSVLVA 129
Query: 489 ASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDVSDLGQHTLIVADTENLLKAPTIVGK 668
ASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYD+SDLGQHTLIVADTENLLKAPTIVGK
Sbjct: 130 ASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDISDLGQHTLIVADTENLLKAPTIVGK 189
Query: 669 SSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFFPDKPITQYPHAVGKNTLLIAGLQA 848
SSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFFPDKPITQYPHAVGKNTLLIAGLQA
Sbjct: 190 SSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFFPDKPITQYPHAVGKNTLLIAGLQA 249
Query: 849 RNNARVIFSGSLDFFSDAFFNSAVQKATPGSQRYPQTGNYELAVALSRWVFKEEGVLRVG 1028
RNNARVIFSGSLDFFSD+FFNSAVQKA PGSQRY QTGNYELAVALSRWVFKEEGVLRVG
Sbjct: 250 RNNARVIFSGSLDFFSDSFFNSAVQKAAPGSQRYSQTGNYELAVALSRWVFKEEGVLRVG 309
Query: 1029 PVSHHRVGEKAPPNAYTVTDLVEYSIVIEQLSEGRWVPFDGDDIQLEFVRIDPFVRTFLE 1208
PVSHHRVGE APPNAYTVTDLVEYSIVI+QLS G+WVPFDGDDIQLEFVRIDPFVRTFL+
Sbjct: 310 PVSHHRVGETAPPNAYTVTDLVEYSIVIQQLSNGKWVPFDGDDIQLEFVRIDPFVRTFLK 369
Query: 1209 KE 1214
K+
Sbjct: 370 KK 371
Score = 55.8 bits (133), Expect(2) = 0.0
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = +1
Query: 1204 LKRKGGKYSVQFKLPDVYGVVQFKGDYN 1287
LK+KGGKYSVQFKLPDVYGV QFK DYN
Sbjct: 368 LKKKGGKYSVQFKLPDVYGVFQFKVDYN 395
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,053,575
Number of extensions: 1405836
Number of successful extensions: 5058
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5046
Number of HSP's successfully gapped: 2
Length of query: 429
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 324
Effective length of database: 14,835,944
Effective search space: 4806845856
Effective search space used: 4806845856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012399
(1288 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 589 e-165
>Sscrofa_Chr06
|| Length = 157765593
Score = 589 bits (297), Expect = e-165
Identities = 303/305 (99%)
Strand = Plus / Minus
Query: 2 ctcgctgtccgagcagcagctccataggcccagccccggcgtacaaggatcacttccggt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73139539 ctcgctgtccgagcagcagctccataggcccagccccggcgtacaaggatcacttccggt 73139480
Query: 62 ggtacttcactaccaagagctgcgattgggcgaccgtggaaggggcatttccggtgtcca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73139479 ggtacttcactaccaagagctgcgattgggcgaccgtggaaggggcatttccggtgtcca 73139420
Query: 122 ggtgcttgggttctttggcagaagtaggaagatggagctcggcgccgcggcccgtgcttg 181
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 73139419 ggtgcttgggttctttggcagaagtaggaagatggagctcggcgccgcgttccgtgcttg 73139360
Query: 182 gtcgctcttgtggctgctgcttcccttgcttggcctggtcggcgccagcggtccccgtac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73139359 gtcgctcttgtggctgctgcttcccttgcttggcctggtcggcgccagcggtccccgtac 73139300
Query: 242 cttagtgcttctggacaacctcaacctgcgggagacgcattcacttttcttccggagcct 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73139299 cttagtgcttctggacaacctcaacctgcgggagacgcattcacttttcttccggagcct 73139240
Query: 302 aaagg 306
|||||
Sbjct: 73139239 aaagg 73139235
Score = 307 bits (155), Expect = 8e-81
Identities = 155/155 (100%)
Strand = Plus / Minus
Query: 795 cagtacccgcacgcggtggggaagaacacgctgctcatcgcggggctgcaggcccggaac 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73130926 cagtacccgcacgcggtggggaagaacacgctgctcatcgcggggctgcaggcccggaac 73130867
Query: 855 aacgcccgtgtcatcttcagcggctccctcgacttcttcagcgatgccttcttcaactcc 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73130866 aacgcccgtgtcatcttcagcggctccctcgacttcttcagcgatgccttcttcaactcc 73130807
Query: 915 gcggtgcagaaggccacgcctggctcccagaggta 949
|||||||||||||||||||||||||||||||||||
Sbjct: 73130806 gcggtgcagaaggccacgcctggctcccagaggta 73130772
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 945 aggtatccccagacaggcaactatgagctcgccgtggccctctcccgctgggtgttcaag 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73130513 aggtatccccagacaggcaactatgagctcgccgtggccctctcccgctgggtgttcaag 73130454
Query: 1005 gaggagggtgtcctccgagtggggcctgtgtcccaccatcgggtgggcgagaaagcccca 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73130453 gaggagggtgtcctccgagtggggcctgtgtcccaccatcgggtgggcgagaaagcccca 73130394
Query: 1065 cccaacgcctacaccgtcactgacctagtcg 1095
|||||||||||||||||||||||||||||||
Sbjct: 73130393 cccaacgcctacaccgtcactgacctagtcg 73130363
Score = 222 bits (112), Expect = 4e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 306 gatcggggcttcgtactcacattcaagaccgcagatgaccccagcctgtccctcattaag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73139002 gatcggggcttcgtactcacattcaagaccgcagatgaccccagcctgtccctcattaag 73138943
Query: 366 tacggagagttcctctatgacaatctcatcgtcttttcaccttcggtagaag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73138942 tacggagagttcctctatgacaatctcatcgtcttttcaccttcggtagaag 73138891
Score = 220 bits (111), Expect = 1e-54
Identities = 121/123 (98%), Gaps = 1/123 (0%)
Strand = Plus / Minus
Query: 1095 gagtacagcatcgtgattgagcagctctcagagggcagatgggtcccctttgatggcgac 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73129743 gagtacagcatcgtgattgagcagctctcagagggcagatgggtcccctttgatggcgac 73129684
Query: 1155 gacattcagctggagtttgtccgcatcgatcctttcgtgaggaccttccttgaaaaggaa 1214
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 73129683 gacattcagctggagtttgtccgcatcgatcctttcgtgaggacctt-cttgaagaggaa 73129625
Query: 1215 agg 1217
|||
Sbjct: 73129624 agg 73129622
Score = 208 bits (105), Expect = 6e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 504 ggtgaccctctccgcgagctgggcagtgagtgtgggattgagtttgacgaggagaaaacg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73131857 ggtgaccctctccgcgagctgggcagtgagtgtgggattgagtttgacgaggagaaaacg 73131798
Query: 564 gccgtcattgaccatcacaactatgatgtctcagacctcggccag 608
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73131797 gccgtcattgaccatcacaactatgatgtctcagacctcggccag 73131753
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 606 cagcacacgctcattgtggccgacactgagaacctgctgaaggccccgaccatcgtcggg 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73131632 cagcacacgctcattgtggccgacactgagaacctgctgaaggccccgaccatcgtcggg 73131573
Query: 666 aagtcatctctgaatcccatcctcttccgaggtgttggg 704
|||||||||||||||||||||||||||||||||||||||
Sbjct: 73131572 aagtcatctctgaatcccatcctcttccgaggtgttggg 73131534
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 703 ggatggtggctgatcctgacaatcctttggtgctggacatcctgaccggctcttctacct 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73131270 ggatggtggctgatcctgacaatcctttggtgctggacatcctgaccggctcttctacct 73131211
Query: 763 cttactccttcttcccagataaacccatcacgcag 797
|||||||||||||||||||||||||||||||||||
Sbjct: 73131210 cttactccttcttcccagataaacccatcacgcag 73131176
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 416 agattttggaggaaatatcaacgtggagaccatcagtacctttatcgacggcggaggcag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73132682 agattttggaggaaatatcaacgtggagaccatcagtacctttatcgacggcggaggcag 73132623
Query: 476 tgtcctggtagctgccagctcagacatcggt 506
|||||||||||||||||||||||||||||||
Sbjct: 73132622 tgtcctggtagctgccagctcagacatcggt 73132592
Score = 123 bits (62), Expect = 3e-25
Identities = 71/74 (95%)
Strand = Plus / Minus
Query: 1215 aggcggcaagtacagcgtccagttcaagttgccggacgtgtacggggtggtccagttcaa 1274
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 73129540 aggcggcaagtacagcgtccagttcaagttgccggacgtgtacggcgtgttccagttcaa 73129481
Query: 1275 aggggactacaacc 1288
|| |||||||||||
Sbjct: 73129480 agtggactacaacc 73129467
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,337,232
Number of extensions: 126
Number of successful extensions: 126
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 10
Length of query: 1288
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1267
Effective length of database: 2,808,413,156
Effective search space: 3558259468652
Effective search space used: 3558259468652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)