Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012400
(1226 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531636.2| PREDICTED: similar to apolipoprotein F precurso... 337 1e-92
>ref|XP_531636.2| PREDICTED: similar to apolipoprotein F precursor [Canis
familiaris].
Length = 336
Score = 337 bits (865), Expect = 1e-92
Identities = 172/284 (60%), Positives = 209/284 (73%)
Frame = +2
Query: 131 SILDMCGLRFITXXXXXXXXXXXXHAVDAISYGNKTKFLVHXXXXXXXXXXXXXXXXCET 310
S+ DMCGLRFI H VD IS+GN T C+T
Sbjct: 52 SVSDMCGLRFIMIQVELFFCYLLLHPVDVISHGNWTNI----PSSLRSWTPSSDSLSCQT 107
Query: 311 LLPKSLPGFTHMAPLPKFLIGLSLMIALEKAGCQADVQVLKLQLYRQGGINATEMLIRHL 490
LLPKSLPGFT+MAPLPKFL+GL L+IALEKAGCQADV L+LQLYRQGG+ AT++LIRHL
Sbjct: 108 LLPKSLPGFTYMAPLPKFLVGLPLVIALEKAGCQADVWPLQLQLYRQGGVKATQILIRHL 167
Query: 491 QELEKGRSSGRGVSADALSSALQQWAEEQTSPKRARRSLSIKDCEHEKEQSVHNIVQLLP 670
QEL++ RS+GR VS DAL+SALQ A EQ P+RARRSL I DCE E+E++VHN+V+L P
Sbjct: 168 QELQQRRSTGRAVSMDALASALQLLAREQPGPERARRSLPINDCEQEQEENVHNVVRLFP 227
Query: 671 GVGTFYNLGTALYYAVQNCSDKAKERGRDGVIDLGYDLLTAMAGSSGGPWGILISTSLKP 850
VGT+YNLGTALYYA Q+CSDKAKERG+DG++D+GYDLL +AG SGGP G+LIS++LKP
Sbjct: 228 VVGTYYNLGTALYYAAQSCSDKAKERGQDGLVDMGYDLLMTLAGWSGGPTGVLISSALKP 287
Query: 851 VVKSGIHRVIQYYNEREVKTPPPETSKEVLGSTIAMGDLEETAT 982
VK+GI ++IQYY E+E T P S++ LG +GDLEET T
Sbjct: 288 AVKAGIQQLIQYYYEQEANTALPVISRKALGGISDVGDLEETTT 331
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,438,278
Number of extensions: 1409017
Number of successful extensions: 4786
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4781
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 303
Effective length of database: 15,374,224
Effective search space: 4658389872
Effective search space used: 4658389872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012400
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012400
(1226 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001121974.1| apolipoprotein F [Bos taurus]. 395 e-110
Alignment gi|NP_001003907.1| ovarian and testicular apolipoprotein N [Bos... 60 3e-09
>ref|NP_001121974.1| apolipoprotein F [Bos taurus].
Length = 307
Score = 395 bits (1016), Expect = e-110
Identities = 197/291 (67%), Positives = 225/291 (77%)
Frame = +2
Query: 203 HAVDAISYGNKTKFLVHXXXXXXXXXXXXXXXXCETLLPKSLPGFTHMAPLPKFLIGLSL 382
HA DAIS GN+ L+H C+TLLPKSLPGFT MAPLP+FL+ L+L
Sbjct: 14 HAADAISSGNQMDVLLHLPSPLESSLTSSYPLSCQTLLPKSLPGFTQMAPLPRFLVSLAL 73
Query: 383 MIALEKAGCQADVQVLKLQLYRQGGINATEMLIRHLQELEKGRSSGRGVSADALSSALQQ 562
MIAL+KAGCQ DVQVL+LQLYRQGG+NAT+ LIRHLQELEK RS+GR VS DAL+SALQ
Sbjct: 74 MIALDKAGCQGDVQVLQLQLYRQGGVNATQTLIRHLQELEKSRSTGRRVSVDALASALQL 133
Query: 563 WAEEQTSPKRARRSLSIKDCEHEKEQSVHNIVQLLPGVGTFYNLGTALYYAVQNCSDKAK 742
WA E P+RARRS SIKDCE E+EQSVH I Q+LPGVGTFYNLGTA+YYAVQNCSD AK
Sbjct: 134 WARENPGPQRARRSPSIKDCEQEQEQSVHKIAQMLPGVGTFYNLGTAIYYAVQNCSDVAK 193
Query: 743 ERGRDGVIDLGYDLLTAMAGSSGGPWGILISTSLKPVVKSGIHRVIQYYNEREVKTPPPE 922
ERGRDGVIDLGYDLL AMAG S G G++I T+LKP +K+G+ R+IQYY ERE TPPPE
Sbjct: 194 ERGRDGVIDLGYDLLMAMAGGSRGSTGLIIGTALKPALKAGVQRLIQYYYEREANTPPPE 253
Query: 923 TSKEVLGSTIAMGDLEETATVTPLVSEVVSSPPYWWWTLFKGYNSDPGFGN 1075
TSKEVL ST M ++EET T+ P VS+VVSS P W WTLF DP + N
Sbjct: 254 TSKEVLRSTSDMSEVEETTTMAPFVSKVVSSNPCWGWTLFNNCGLDPRYWN 304
>ref|NP_001003907.1| ovarian and testicular apolipoprotein N [Bos taurus].
Length = 259
Score = 60.5 bits (145), Expect = 3e-09
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
Frame = +2
Query: 317 PKSLPGFTH----MAPLPKFLIGLSLMIALEKAGCQADVQVLKLQLYRQGGINATEMLIR 484
PK+ H +APLP++L L+L + LE+ GC + +L+LQL + GG + TE LIR
Sbjct: 58 PKTCQDLLHVAPSLAPLPEYLSNLALEVVLEEIGCTTEAHILQLQLVKIGGKDTTETLIR 117
Query: 485 HLQELEKGRSSGRGVSADALSSALQQWAEEQTSPKRARRSLSIKD-CE-------HEKEQ 640
++ +G +G+ + L+ +RA+RS+++ + C +E +
Sbjct: 118 ESKKHNEGEGTGQ------VKVILKDLGRSPGELRRAQRSVTLPEACRQEDRWVLYETAK 171
Query: 641 SVHNIVQLLPGVGTFYNLGTALYYAVQNCSDKAKE 745
+ + LP A Q C+D++ E
Sbjct: 172 MIAEFAEKLPNTELVKEFKAAATDVTQKCTDESWE 206
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,358,533
Number of extensions: 1368563
Number of successful extensions: 4698
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4677
Number of HSP's successfully gapped: 2
Length of query: 408
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,207,134
Effective search space: 4304761602
Effective search space used: 4304761602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012400
(1226 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003925.1| ovarian and testicular apolipoprotein N [Sus... 62 9e-10
>ref|NP_001003925.1| ovarian and testicular apolipoprotein N [Sus scrofa].
Length = 254
Score = 61.6 bits (148), Expect = 9e-10
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 8/140 (5%)
Frame = +2
Query: 344 MAPLPKFLIGLSLMIALEKAGCQADVQVLKLQLYRQGGINATEMLIRHLQELEKGRSSGR 523
+APLP++L L+L +ALE+ GC + +L+LQL + GG + TE LIR K R+ +
Sbjct: 66 LAPLPEYLSNLALEVALEEVGCLTEAHMLELQLVKMGGKDTTETLIRE----SKKRNEEK 121
Query: 524 GVSADALSSALQQWAEEQTSPKRARRSLSIKD-CEHEKEQSVHNIVQL-------LPGVG 679
G++ + L+ +R +RS+++ + C+ E ++ + +L LP
Sbjct: 122 GINDGEI--MLRGLEGSPGELRRVQRSVTLPEACQQEGRWVLYELAELIGEFAEKLPSTE 179
Query: 680 TFYNLGTALYYAVQNCSDKA 739
L TA Q C+D++
Sbjct: 180 LVRELKTAAVDVTQKCTDES 199
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,153,200
Number of extensions: 879886
Number of successful extensions: 2941
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2936
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,829,335
Effective search space: 2710605845
Effective search space used: 2710605845
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012400
(1226 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598758.1| apolipoprotein F [Mus musculus]. 298 4e-81
>ref|NP_598758.1| apolipoprotein F [Mus musculus].
Length = 326
Score = 298 bits (764), Expect = 4e-81
Identities = 156/255 (61%), Positives = 194/255 (76%), Gaps = 5/255 (1%)
Frame = +2
Query: 302 CETLLPKSLPGFTHMAPLPKFLIGLSLMIALEKAGCQADVQVLKLQLYRQGGINATEMLI 481
C+ LLPKSLPGFT+M P+ KFL+GL+L ALE AGCQA+V L+LQLYR GG+ AT+ LI
Sbjct: 66 CQMLLPKSLPGFTYMPPVSKFLVGLALRNALEAAGCQAEVWALQLQLYRLGGVEATQALI 125
Query: 482 RHLQELEKGRSSGRGVSADALSSALQQWAEEQTSPKRARRSLSIKDCEHEKEQSVHNIVQ 661
HLQEL+K + R VS DALSSALQ A EQ PKRA+RS+S DC++++EQSVHN+V
Sbjct: 126 HHLQELQKSGHTDREVSVDALSSALQLLAWEQPGPKRAKRSISNTDCDNDQEQSVHNVVD 185
Query: 662 LLPGVGTFYNLGTALYYAVQNCSDKAKERGRDGVIDLGYDLLTAMAGSSGGPWGILISTS 841
LLP VGT+YNLGTALYYA++NCSDKAKERGRDG IDLGYDLL AM G+SGGP G +I+ +
Sbjct: 186 LLPAVGTYYNLGTALYYAIKNCSDKAKERGRDGAIDLGYDLLMAMVGASGGPAGAVITAA 245
Query: 842 LKPVVKSGIHRVIQ-YYNEREVKTPPPE--TSKEVLG--STIAMGDLEETATVTPLVSEV 1006
LKP +K+G+ R+IQ YY+E+EV TP PE T + G +T +G +EE A ++ VSEV
Sbjct: 246 LKPAMKAGVQRLIQYYYDEKEVTTPQPEVTTHQPETGKDATTDIGVVEEIA-MSNFVSEV 304
Query: 1007 VSSPPYWWWTLFKGY 1051
S+ W W L K Y
Sbjct: 305 ESTTSNWEWPLLKNY 319
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,004,780
Number of extensions: 1163720
Number of successful extensions: 3890
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3882
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 304
Effective length of database: 12,493,815
Effective search space: 3798119760
Effective search space used: 3798119760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012400
(1226 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001629.1| apolipoprotein F precursor [Homo sapiens]. 364 e-101
>ref|NP_001629.1| apolipoprotein F precursor [Homo sapiens].
Length = 326
Score = 364 bits (935), Expect = e-101
Identities = 185/323 (57%), Positives = 227/323 (70%), Gaps = 1/323 (0%)
Frame = +2
Query: 110 ITGLCANSILDMCGLRFITXXXXXXXXXXXXHAVDAISYGNKTKFLVHXXXXXXXXXXXX 289
+TGLC S DM GLR I H VDA SYG +T L+H
Sbjct: 1 MTGLCGYSAPDMRGLRLIMIPVELLLCYLLLHPVDATSYGKQTNVLMHFPLSLESQTPSS 60
Query: 290 XXXXCETLLPKSLPGFTHMAPLPKFLIGLSLMIALEKAGCQADVQVLKLQLYRQGGINAT 469
C+ L PKSLPGF+HMAPLPKFL+ L+L ALE+AGCQADV L+LQLYRQGG+NAT
Sbjct: 61 DPLSCQFLHPKSLPGFSHMAPLPKFLVSLALRNALEEAGCQADVWALQLQLYRQGGVNAT 120
Query: 470 EMLIRHLQELEKGRSSGRGVSADALSSALQQWAEEQTSPKRARRSLSIKDCEHEKEQSVH 649
++LI+HL+ L+KGRS+ R VS +AL+SALQ A EQ S R RSL +DCE+EKEQ+VH
Sbjct: 121 QVLIQHLRGLQKGRSTERNVSVEALASALQLLAREQQSTGRVGRSLPTEDCENEKEQAVH 180
Query: 650 NIVQLLPGVGTFYNLGTALYYAVQNCSDKAKERGRDGVIDLGYDLLTAMAGSSGGPWGIL 829
N+VQLLPGVGTFYNLGTALYYA QNC KA+ERGRDG IDLGYDLL MAG SGGP G+
Sbjct: 181 NVVQLLPGVGTFYNLGTALYYATQNCLGKARERGRDGAIDLGYDLLMTMAGMSGGPMGLA 240
Query: 830 ISTSLKPVVKSGIHRVIQYY-NEREVKTPPPETSKEVLGSTIAMGDLEETATVTPLVSEV 1006
IS +LKP ++SG+ ++IQYY ++++ PET+KE L + + DLEET T+ +SEV
Sbjct: 241 ISAALKPALRSGVQQLIQYYQDQKDANISQPETTKEGLRAISDVSDLEETTTLASFISEV 300
Query: 1007 VSSPPYWWWTLFKGYNSDPGFGN 1075
VSS PYW W + K Y+ DPG G+
Sbjct: 301 VSSAPYWGWAIIKSYDLDPGAGS 323
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,484,221
Number of extensions: 1389925
Number of successful extensions: 4516
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4505
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,835,944
Effective search space: 4495291032
Effective search space used: 4495291032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012400
(1226 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 2074 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 2074 bits (1046), Expect = 0.0
Identities = 1094/1105 (99%), Gaps = 4/1105 (0%)
Strand = Plus / Minus
Query: 125 gctaactctattctggacatgtgtggtctcagattcatcaccgtgctagttgagttactt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296430 gctaactctattctggacatgtgtggtctcagattcatcaccgtgctagttgagttactt 23296371
Query: 185 ctttgctgcttcctgctacacgctgtggatgccatttcatatggaaacaagacaaaattc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296370 ctttgctgcttcctgctacacgctgtggatgccatttcatatggaaacaagacaaaattc 23296311
Query: 245 ttggtgcatcttccttcatccttgggatcctggccaccttcctcagaccccttgtcttgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296310 ttggtgcatcttccttcatccttgggatcctggccaccttcctcagaccccttgtcttgc 23296251
Query: 305 gagaccctgctccccaaatccctgcctggcttcacccacatggcccctctacccaagttc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296250 gagaccctgctccccaaatccctgcctggcttcacccacatggcccctctacccaagttc 23296191
Query: 365 ctgataggcctgtcactgatgattgctctggagaaagctggctgtcaagctgatgtacag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296190 ctgataggcctgtcactgatgattgctctggagaaagctggctgtcaagctgatgtacag 23296131
Query: 425 gtcctgaagcttcagctctaccgccaggggggtataaatgctacagagatgcttatcaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296130 gtcctgaagcttcagctctaccgccaggggggtataaatgctacagagatgcttatcaga 23296071
Query: 485 catcttcaagaacttgagaaaggcagaagctcaggtaggggagtatcagcggatgccctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296070 catcttcaagaacttgagaaaggcagaagctcaggtaggggagtatcagcggatgccctg 23296011
Query: 545 tcttctgctctgcagcagtgggccgaggagcagacaagcccaaagagggctcgtcgatcc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296010 tcttctgctctgcagcagtgggccgaggagcagacaagcccaaagagggctcgtcgatcc 23295951
Query: 605 ctctccatcaaggactgcgagcatgagaaggagcagagtgtgcacaatatagtccagcta 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23295950 ctctccatcaaggactgcgagcatgagaaggagcagagtgtgcacaatatagtccagcta 23295891
Query: 665 ttgccgggagtgggaaccttctacaacctgggcacggctttgtattacgctgttcagaac 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23295890 ttgccgggagtgggaaccttctacaacctgggcacggctttgtattacgctgttcagaac 23295831
Query: 725 tgctccgacaaggccaaggaaagaggccgagatggggtcatagatctgggttatgacctc 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23295830 tgctccgacaaggccaaggaaagaggccgagatggggtcatagatctgggttatgacctc 23295771
Query: 785 ctgacagccatggctggatcgtcagg-ggggccctggggaatactgatcagtacttcact 843
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 23295770 ctgacagccatggctggatcgtcagggggggccctggggaatactgatcagtacttcact 23295711
Query: 844 taaacctgtagtgaagtctgggattcatcgtgtgatccagtattacaatgagagagaggt 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23295710 taaacctgtagtgaagtctgggattcatcgtgtgatccagtattacaatgagagagaggt 23295651
Query: 904 gaaaacccctccaccagagaccagcaaggaggtcttggggagcaccatagccatgggtga 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23295650 gaaaacccctccaccagagaccagcaaggaggtcttggggagcaccatagccatgggtga 23295591
Query: 964 cctggaagaaacagctaccgtgacccctttggtgtcagaagtagtaagttcacctcctta 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23295590 cctggaagaaacagctaccgtgacccctttggtgtcagaagtagtaagttcacctcctta 23295531
Query: 1024 ctggtggtggaccttattcaagggctacaactcagatcctggctttgggaatcctgcgat 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23295530 ctggtggtggaccttattcaagggctacaactcagatcctggctttgggaatcctgcgat 23295471
Query: 1084 ataaaagaaggtggtaaacacattggctagatctaatattctgaccagtttgtatgtgcg 1143
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 23295470 ataaaagaaggtggtaaacacattggctagatctaatattctgacaagtttgtatgtgcg 23295411
Query: 1144 tgttc-aaattcatatatctaattttgttatc-aggaggaaggcagtgcccgtaaatgta 1201
||||| |||| ||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct: 23295410 tgttcaaaatccatatatctaa-tttgttatcaaggaggaaggcagtgccgtaaaatgta 23295352
Query: 1202 ngaatttccaattttgttgttcaga 1226
||||||| ||||||||||||||||
Sbjct: 23295351 ggaatttcaaattttgttgttcaga 23295327
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 1 agctcttactgattgtaggggaaagcaaaacctactttcttcatgacggaggagtaggca 60
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Sbjct: 23296788 agctcttactgattgtaggggaaagcaaaacctactttcttcatgacggaggagtaggca 23296729
Query: 61 gaaagggattgaggagctaccaaaactaccaaagtgatcttacttctcaatcactggact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296728 gaaagggattgaggagctaccaaaactaccaaagtgatcttacttctcaatcactggact 23296669
Query: 121 gtg 123
|||
Sbjct: 23296668 gtg 23296666
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,217,058
Number of extensions: 216
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 2
Length of query: 1226
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1205
Effective length of database: 2,808,413,156
Effective search space: 3384137852980
Effective search space used: 3384137852980
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)