Animal-Genome cDNA 20110601C-012400


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012400
         (1226 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_531636.2| PREDICTED: similar to apolipoprotein F precurso...   337   1e-92

>ref|XP_531636.2| PREDICTED: similar to apolipoprotein F precursor [Canis
           familiaris].
          Length = 336

 Score =  337 bits (865), Expect = 1e-92
 Identities = 172/284 (60%), Positives = 209/284 (73%)
 Frame = +2

Query: 131 SILDMCGLRFITXXXXXXXXXXXXHAVDAISYGNKTKFLVHXXXXXXXXXXXXXXXXCET 310
           S+ DMCGLRFI             H VD IS+GN T                     C+T
Sbjct: 52  SVSDMCGLRFIMIQVELFFCYLLLHPVDVISHGNWTNI----PSSLRSWTPSSDSLSCQT 107

Query: 311 LLPKSLPGFTHMAPLPKFLIGLSLMIALEKAGCQADVQVLKLQLYRQGGINATEMLIRHL 490
           LLPKSLPGFT+MAPLPKFL+GL L+IALEKAGCQADV  L+LQLYRQGG+ AT++LIRHL
Sbjct: 108 LLPKSLPGFTYMAPLPKFLVGLPLVIALEKAGCQADVWPLQLQLYRQGGVKATQILIRHL 167

Query: 491 QELEKGRSSGRGVSADALSSALQQWAEEQTSPKRARRSLSIKDCEHEKEQSVHNIVQLLP 670
           QEL++ RS+GR VS DAL+SALQ  A EQ  P+RARRSL I DCE E+E++VHN+V+L P
Sbjct: 168 QELQQRRSTGRAVSMDALASALQLLAREQPGPERARRSLPINDCEQEQEENVHNVVRLFP 227

Query: 671 GVGTFYNLGTALYYAVQNCSDKAKERGRDGVIDLGYDLLTAMAGSSGGPWGILISTSLKP 850
            VGT+YNLGTALYYA Q+CSDKAKERG+DG++D+GYDLL  +AG SGGP G+LIS++LKP
Sbjct: 228 VVGTYYNLGTALYYAAQSCSDKAKERGQDGLVDMGYDLLMTLAGWSGGPTGVLISSALKP 287

Query: 851 VVKSGIHRVIQYYNEREVKTPPPETSKEVLGSTIAMGDLEETAT 982
            VK+GI ++IQYY E+E  T  P  S++ LG    +GDLEET T
Sbjct: 288 AVKAGIQQLIQYYYEQEANTALPVISRKALGGISDVGDLEETTT 331


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,438,278
Number of extensions: 1409017
Number of successful extensions: 4786
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4781
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 303
Effective length of database: 15,374,224
Effective search space: 4658389872
Effective search space used: 4658389872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012400

Animal-Genome cDNA 20110601C-012400


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012400
         (1226 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001121974.1| apolipoprotein F [Bos taurus].                    395   e-110
Alignment   gi|NP_001003907.1| ovarian and testicular apolipoprotein N [Bos...    60   3e-09

>ref|NP_001121974.1| apolipoprotein F [Bos taurus].
          Length = 307

 Score =  395 bits (1016), Expect = e-110
 Identities = 197/291 (67%), Positives = 225/291 (77%)
 Frame = +2

Query: 203  HAVDAISYGNKTKFLVHXXXXXXXXXXXXXXXXCETLLPKSLPGFTHMAPLPKFLIGLSL 382
            HA DAIS GN+   L+H                C+TLLPKSLPGFT MAPLP+FL+ L+L
Sbjct: 14   HAADAISSGNQMDVLLHLPSPLESSLTSSYPLSCQTLLPKSLPGFTQMAPLPRFLVSLAL 73

Query: 383  MIALEKAGCQADVQVLKLQLYRQGGINATEMLIRHLQELEKGRSSGRGVSADALSSALQQ 562
            MIAL+KAGCQ DVQVL+LQLYRQGG+NAT+ LIRHLQELEK RS+GR VS DAL+SALQ 
Sbjct: 74   MIALDKAGCQGDVQVLQLQLYRQGGVNATQTLIRHLQELEKSRSTGRRVSVDALASALQL 133

Query: 563  WAEEQTSPKRARRSLSIKDCEHEKEQSVHNIVQLLPGVGTFYNLGTALYYAVQNCSDKAK 742
            WA E   P+RARRS SIKDCE E+EQSVH I Q+LPGVGTFYNLGTA+YYAVQNCSD AK
Sbjct: 134  WARENPGPQRARRSPSIKDCEQEQEQSVHKIAQMLPGVGTFYNLGTAIYYAVQNCSDVAK 193

Query: 743  ERGRDGVIDLGYDLLTAMAGSSGGPWGILISTSLKPVVKSGIHRVIQYYNEREVKTPPPE 922
            ERGRDGVIDLGYDLL AMAG S G  G++I T+LKP +K+G+ R+IQYY ERE  TPPPE
Sbjct: 194  ERGRDGVIDLGYDLLMAMAGGSRGSTGLIIGTALKPALKAGVQRLIQYYYEREANTPPPE 253

Query: 923  TSKEVLGSTIAMGDLEETATVTPLVSEVVSSPPYWWWTLFKGYNSDPGFGN 1075
            TSKEVL ST  M ++EET T+ P VS+VVSS P W WTLF     DP + N
Sbjct: 254  TSKEVLRSTSDMSEVEETTTMAPFVSKVVSSNPCWGWTLFNNCGLDPRYWN 304


>ref|NP_001003907.1| ovarian and testicular apolipoprotein N [Bos taurus].
          Length = 259

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
 Frame = +2

Query: 317 PKSLPGFTH----MAPLPKFLIGLSLMIALEKAGCQADVQVLKLQLYRQGGINATEMLIR 484
           PK+     H    +APLP++L  L+L + LE+ GC  +  +L+LQL + GG + TE LIR
Sbjct: 58  PKTCQDLLHVAPSLAPLPEYLSNLALEVVLEEIGCTTEAHILQLQLVKIGGKDTTETLIR 117

Query: 485 HLQELEKGRSSGRGVSADALSSALQQWAEEQTSPKRARRSLSIKD-CE-------HEKEQ 640
             ++  +G  +G+      +   L+         +RA+RS+++ + C        +E  +
Sbjct: 118 ESKKHNEGEGTGQ------VKVILKDLGRSPGELRRAQRSVTLPEACRQEDRWVLYETAK 171

Query: 641 SVHNIVQLLPGVGTFYNLGTALYYAVQNCSDKAKE 745
            +    + LP          A     Q C+D++ E
Sbjct: 172 MIAEFAEKLPNTELVKEFKAAATDVTQKCTDESWE 206


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,358,533
Number of extensions: 1368563
Number of successful extensions: 4698
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4677
Number of HSP's successfully gapped: 2
Length of query: 408
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,207,134
Effective search space: 4304761602
Effective search space used: 4304761602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012400
         (1226 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001003925.1| ovarian and testicular apolipoprotein N [Sus...    62   9e-10

>ref|NP_001003925.1| ovarian and testicular apolipoprotein N [Sus scrofa].
          Length = 254

 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 8/140 (5%)
 Frame = +2

Query: 344 MAPLPKFLIGLSLMIALEKAGCQADVQVLKLQLYRQGGINATEMLIRHLQELEKGRSSGR 523
           +APLP++L  L+L +ALE+ GC  +  +L+LQL + GG + TE LIR      K R+  +
Sbjct: 66  LAPLPEYLSNLALEVALEEVGCLTEAHMLELQLVKMGGKDTTETLIRE----SKKRNEEK 121

Query: 524 GVSADALSSALQQWAEEQTSPKRARRSLSIKD-CEHEKEQSVHNIVQL-------LPGVG 679
           G++   +   L+         +R +RS+++ + C+ E    ++ + +L       LP   
Sbjct: 122 GINDGEI--MLRGLEGSPGELRRVQRSVTLPEACQQEGRWVLYELAELIGEFAEKLPSTE 179

Query: 680 TFYNLGTALYYAVQNCSDKA 739
               L TA     Q C+D++
Sbjct: 180 LVRELKTAAVDVTQKCTDES 199


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,153,200
Number of extensions: 879886
Number of successful extensions: 2941
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2936
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,829,335
Effective search space: 2710605845
Effective search space used: 2710605845
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012400
         (1226 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_598758.1| apolipoprotein F [Mus musculus].                     298   4e-81

>ref|NP_598758.1| apolipoprotein F [Mus musculus].
          Length = 326

 Score =  298 bits (764), Expect = 4e-81
 Identities = 156/255 (61%), Positives = 194/255 (76%), Gaps = 5/255 (1%)
 Frame = +2

Query: 302  CETLLPKSLPGFTHMAPLPKFLIGLSLMIALEKAGCQADVQVLKLQLYRQGGINATEMLI 481
            C+ LLPKSLPGFT+M P+ KFL+GL+L  ALE AGCQA+V  L+LQLYR GG+ AT+ LI
Sbjct: 66   CQMLLPKSLPGFTYMPPVSKFLVGLALRNALEAAGCQAEVWALQLQLYRLGGVEATQALI 125

Query: 482  RHLQELEKGRSSGRGVSADALSSALQQWAEEQTSPKRARRSLSIKDCEHEKEQSVHNIVQ 661
             HLQEL+K   + R VS DALSSALQ  A EQ  PKRA+RS+S  DC++++EQSVHN+V 
Sbjct: 126  HHLQELQKSGHTDREVSVDALSSALQLLAWEQPGPKRAKRSISNTDCDNDQEQSVHNVVD 185

Query: 662  LLPGVGTFYNLGTALYYAVQNCSDKAKERGRDGVIDLGYDLLTAMAGSSGGPWGILISTS 841
            LLP VGT+YNLGTALYYA++NCSDKAKERGRDG IDLGYDLL AM G+SGGP G +I+ +
Sbjct: 186  LLPAVGTYYNLGTALYYAIKNCSDKAKERGRDGAIDLGYDLLMAMVGASGGPAGAVITAA 245

Query: 842  LKPVVKSGIHRVIQ-YYNEREVKTPPPE--TSKEVLG--STIAMGDLEETATVTPLVSEV 1006
            LKP +K+G+ R+IQ YY+E+EV TP PE  T +   G  +T  +G +EE A ++  VSEV
Sbjct: 246  LKPAMKAGVQRLIQYYYDEKEVTTPQPEVTTHQPETGKDATTDIGVVEEIA-MSNFVSEV 304

Query: 1007 VSSPPYWWWTLFKGY 1051
             S+   W W L K Y
Sbjct: 305  ESTTSNWEWPLLKNY 319


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,004,780
Number of extensions: 1163720
Number of successful extensions: 3890
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3882
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 304
Effective length of database: 12,493,815
Effective search space: 3798119760
Effective search space used: 3798119760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012400
         (1226 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001629.1| apolipoprotein F precursor [Homo sapiens].           364   e-101

>ref|NP_001629.1| apolipoprotein F precursor [Homo sapiens].
          Length = 326

 Score =  364 bits (935), Expect = e-101
 Identities = 185/323 (57%), Positives = 227/323 (70%), Gaps = 1/323 (0%)
 Frame = +2

Query: 110  ITGLCANSILDMCGLRFITXXXXXXXXXXXXHAVDAISYGNKTKFLVHXXXXXXXXXXXX 289
            +TGLC  S  DM GLR I             H VDA SYG +T  L+H            
Sbjct: 1    MTGLCGYSAPDMRGLRLIMIPVELLLCYLLLHPVDATSYGKQTNVLMHFPLSLESQTPSS 60

Query: 290  XXXXCETLLPKSLPGFTHMAPLPKFLIGLSLMIALEKAGCQADVQVLKLQLYRQGGINAT 469
                C+ L PKSLPGF+HMAPLPKFL+ L+L  ALE+AGCQADV  L+LQLYRQGG+NAT
Sbjct: 61   DPLSCQFLHPKSLPGFSHMAPLPKFLVSLALRNALEEAGCQADVWALQLQLYRQGGVNAT 120

Query: 470  EMLIRHLQELEKGRSSGRGVSADALSSALQQWAEEQTSPKRARRSLSIKDCEHEKEQSVH 649
            ++LI+HL+ L+KGRS+ R VS +AL+SALQ  A EQ S  R  RSL  +DCE+EKEQ+VH
Sbjct: 121  QVLIQHLRGLQKGRSTERNVSVEALASALQLLAREQQSTGRVGRSLPTEDCENEKEQAVH 180

Query: 650  NIVQLLPGVGTFYNLGTALYYAVQNCSDKAKERGRDGVIDLGYDLLTAMAGSSGGPWGIL 829
            N+VQLLPGVGTFYNLGTALYYA QNC  KA+ERGRDG IDLGYDLL  MAG SGGP G+ 
Sbjct: 181  NVVQLLPGVGTFYNLGTALYYATQNCLGKARERGRDGAIDLGYDLLMTMAGMSGGPMGLA 240

Query: 830  ISTSLKPVVKSGIHRVIQYY-NEREVKTPPPETSKEVLGSTIAMGDLEETATVTPLVSEV 1006
            IS +LKP ++SG+ ++IQYY ++++     PET+KE L +   + DLEET T+   +SEV
Sbjct: 241  ISAALKPALRSGVQQLIQYYQDQKDANISQPETTKEGLRAISDVSDLEETTTLASFISEV 300

Query: 1007 VSSPPYWWWTLFKGYNSDPGFGN 1075
            VSS PYW W + K Y+ DPG G+
Sbjct: 301  VSSAPYWGWAIIKSYDLDPGAGS 323


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,484,221
Number of extensions: 1389925
Number of successful extensions: 4516
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4505
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,835,944
Effective search space: 4495291032
Effective search space used: 4495291032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012400
         (1226 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                        2074   0.0  

>Sscrofa_Chr05 
||          Length = 111506441

 Score = 2074 bits (1046), Expect = 0.0
 Identities = 1094/1105 (99%), Gaps = 4/1105 (0%)
 Strand = Plus / Minus

                                                                            
Query: 125      gctaactctattctggacatgtgtggtctcagattcatcaccgtgctagttgagttactt 184
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296430 gctaactctattctggacatgtgtggtctcagattcatcaccgtgctagttgagttactt 23296371

                                                                            
Query: 185      ctttgctgcttcctgctacacgctgtggatgccatttcatatggaaacaagacaaaattc 244
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296370 ctttgctgcttcctgctacacgctgtggatgccatttcatatggaaacaagacaaaattc 23296311

                                                                            
Query: 245      ttggtgcatcttccttcatccttgggatcctggccaccttcctcagaccccttgtcttgc 304
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296310 ttggtgcatcttccttcatccttgggatcctggccaccttcctcagaccccttgtcttgc 23296251

                                                                            
Query: 305      gagaccctgctccccaaatccctgcctggcttcacccacatggcccctctacccaagttc 364
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296250 gagaccctgctccccaaatccctgcctggcttcacccacatggcccctctacccaagttc 23296191

                                                                            
Query: 365      ctgataggcctgtcactgatgattgctctggagaaagctggctgtcaagctgatgtacag 424
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296190 ctgataggcctgtcactgatgattgctctggagaaagctggctgtcaagctgatgtacag 23296131

                                                                            
Query: 425      gtcctgaagcttcagctctaccgccaggggggtataaatgctacagagatgcttatcaga 484
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296130 gtcctgaagcttcagctctaccgccaggggggtataaatgctacagagatgcttatcaga 23296071

                                                                            
Query: 485      catcttcaagaacttgagaaaggcagaagctcaggtaggggagtatcagcggatgccctg 544
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296070 catcttcaagaacttgagaaaggcagaagctcaggtaggggagtatcagcggatgccctg 23296011

                                                                            
Query: 545      tcttctgctctgcagcagtgggccgaggagcagacaagcccaaagagggctcgtcgatcc 604
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296010 tcttctgctctgcagcagtgggccgaggagcagacaagcccaaagagggctcgtcgatcc 23295951

                                                                            
Query: 605      ctctccatcaaggactgcgagcatgagaaggagcagagtgtgcacaatatagtccagcta 664
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23295950 ctctccatcaaggactgcgagcatgagaaggagcagagtgtgcacaatatagtccagcta 23295891

                                                                            
Query: 665      ttgccgggagtgggaaccttctacaacctgggcacggctttgtattacgctgttcagaac 724
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23295890 ttgccgggagtgggaaccttctacaacctgggcacggctttgtattacgctgttcagaac 23295831

                                                                            
Query: 725      tgctccgacaaggccaaggaaagaggccgagatggggtcatagatctgggttatgacctc 784
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23295830 tgctccgacaaggccaaggaaagaggccgagatggggtcatagatctgggttatgacctc 23295771

                                                                            
Query: 785      ctgacagccatggctggatcgtcagg-ggggccctggggaatactgatcagtacttcact 843
                |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 23295770 ctgacagccatggctggatcgtcagggggggccctggggaatactgatcagtacttcact 23295711

                                                                            
Query: 844      taaacctgtagtgaagtctgggattcatcgtgtgatccagtattacaatgagagagaggt 903
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23295710 taaacctgtagtgaagtctgggattcatcgtgtgatccagtattacaatgagagagaggt 23295651

                                                                            
Query: 904      gaaaacccctccaccagagaccagcaaggaggtcttggggagcaccatagccatgggtga 963
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23295650 gaaaacccctccaccagagaccagcaaggaggtcttggggagcaccatagccatgggtga 23295591

                                                                            
Query: 964      cctggaagaaacagctaccgtgacccctttggtgtcagaagtagtaagttcacctcctta 1023
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23295590 cctggaagaaacagctaccgtgacccctttggtgtcagaagtagtaagttcacctcctta 23295531

                                                                            
Query: 1024     ctggtggtggaccttattcaagggctacaactcagatcctggctttgggaatcctgcgat 1083
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23295530 ctggtggtggaccttattcaagggctacaactcagatcctggctttgggaatcctgcgat 23295471

                                                                            
Query: 1084     ataaaagaaggtggtaaacacattggctagatctaatattctgaccagtttgtatgtgcg 1143
                ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 23295470 ataaaagaaggtggtaaacacattggctagatctaatattctgacaagtttgtatgtgcg 23295411

                                                                            
Query: 1144     tgttc-aaattcatatatctaattttgttatc-aggaggaaggcagtgcccgtaaatgta 1201
                ||||| |||| ||||||||||| ||||||||| |||||||||||||||||   |||||||
Sbjct: 23295410 tgttcaaaatccatatatctaa-tttgttatcaaggaggaaggcagtgccgtaaaatgta 23295352

                                         
Query: 1202     ngaatttccaattttgttgttcaga 1226
                 ||||||| ||||||||||||||||
Sbjct: 23295351 ggaatttcaaattttgttgttcaga 23295327



 Score =  244 bits (123), Expect = 1e-61
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        agctcttactgattgtaggggaaagcaaaacctactttcttcatgacggaggagtaggca 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296788 agctcttactgattgtaggggaaagcaaaacctactttcttcatgacggaggagtaggca 23296729

                                                                            
Query: 61       gaaagggattgaggagctaccaaaactaccaaagtgatcttacttctcaatcactggact 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296728 gaaagggattgaggagctaccaaaactaccaaagtgatcttacttctcaatcactggact 23296669

                   
Query: 121      gtg 123
                |||
Sbjct: 23296668 gtg 23296666


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,217,058
Number of extensions: 216
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 2
Length of query: 1226
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1205
Effective length of database: 2,808,413,156
Effective search space: 3384137852980
Effective search space used: 3384137852980
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)