Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012410
(549 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533197.2| PREDICTED: similar to 60S acidic ribosomal prot... 120 8e-28
Alignment gi|XP_542648.1| PREDICTED: similar to 60S acidic ribosomal prot... 119 2e-27
>ref|XP_533197.2| PREDICTED: similar to 60S acidic ribosomal protein P2 [Canis
familiaris].
Length = 115
Score = 120 bits (301), Expect = 8e-28
Identities = 70/115 (60%), Positives = 70/115 (60%)
Frame = +2
Query: 92 MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 271
MRYVASYLLAAL GNTSPSAKDIKKI DSVGIEADDDRLNKVISELNGKNIEDVIAQGIG
Sbjct: 1 MRYVASYLLAALRGNTSPSAKDIKKIGDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 272 KLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 436
KL DDDMGFGLFD
Sbjct: 61 KLASVPAGGAVAVSAAPGSAAPAAGAAPAAAEEKKDEKKEESEESDDDMGFGLFD 115
>ref|XP_542648.1| PREDICTED: similar to 60S acidic ribosomal protein P2 [Canis
familiaris].
Length = 115
Score = 119 bits (298), Expect = 2e-27
Identities = 67/115 (58%), Positives = 70/115 (60%)
Frame = +2
Query: 92 MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 271
MRYVASYLLA LGGNTSPSAKD+KKI DSVGI+ADDDRLNKVISELNGKNIEDV+AQGIG
Sbjct: 1 MRYVASYLLATLGGNTSPSAKDVKKIPDSVGIKADDDRLNKVISELNGKNIEDVMAQGIG 60
Query: 272 KLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 436
KL DDDMGFGLFD
Sbjct: 61 KLAGVPAGGAAAVSAAPGSAAPAAGAAPAAVEEKKDEKKEESEESDDDMGFGLFD 115
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 13,150,224
Number of extensions: 259033
Number of successful extensions: 1359
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1349
Number of HSP's successfully gapped: 2
Length of query: 183
Length of database: 18,874,504
Length adjustment: 96
Effective length of query: 87
Effective length of database: 15,674,248
Effective search space: 1363659576
Effective search space used: 1363659576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Animal-Genome cDNA 20110601C-012410
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012410
(549 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002689037.1| PREDICTED: ribosomal protein P2-like [Bos ta... 138 3e-33
Alignment gi|XP_600173.1| PREDICTED: ribosomal protein P2-like [Bos tauru... 138 3e-33
Alignment gi|NP_777213.1| 60S acidic ribosomal protein P2 [Bos taurus]. 123 1e-28
>ref|XP_002689037.1| PREDICTED: ribosomal protein P2-like [Bos taurus].
Length = 130
Score = 138 bits (347), Expect = 3e-33
Identities = 77/129 (59%), Positives = 81/129 (62%)
Frame = +2
Query: 50 PPRSHARGLSAAAEMRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLNKVISEL 229
PPRSH RG SA AE+RYVASYLLA LGG++SPSAKDIKKILDSVGIEADD+RLNKVISEL
Sbjct: 2 PPRSHVRGCSATAEIRYVASYLLATLGGSSSPSAKDIKKILDSVGIEADDNRLNKVISEL 61
Query: 230 NGKNIEDVIAQGIGKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD 409
NGKNIEDVIAQGIGKL D
Sbjct: 62 NGKNIEDVIAQGIGKLASVTAGGAVVISTAPGSAAPAAGSAPAAAEEKKEEKKEELEESD 121
Query: 410 DDMGFGLFD 436
DDMGF LFD
Sbjct: 122 DDMGFSLFD 130
>ref|XP_600173.1| PREDICTED: ribosomal protein P2-like [Bos taurus].
Length = 130
Score = 138 bits (347), Expect = 3e-33
Identities = 77/129 (59%), Positives = 81/129 (62%)
Frame = +2
Query: 50 PPRSHARGLSAAAEMRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLNKVISEL 229
PPRSH RG SA AE+RYVASYLLA LGG++SPSAKDIKKILDSVGIEADD+RLNKVISEL
Sbjct: 2 PPRSHVRGCSATAEIRYVASYLLATLGGSSSPSAKDIKKILDSVGIEADDNRLNKVISEL 61
Query: 230 NGKNIEDVIAQGIGKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD 409
NGKNIEDVIAQGIGKL D
Sbjct: 62 NGKNIEDVIAQGIGKLASVTAGGAVVISTAPGSAAPAAGSAPAAAEEKKEEKKEELEESD 121
Query: 410 DDMGFGLFD 436
DDMGF LFD
Sbjct: 122 DDMGFSLFD 130
>ref|NP_777213.1| 60S acidic ribosomal protein P2 [Bos taurus].
Length = 115
Score = 123 bits (308), Expect = 1e-28
Identities = 70/115 (60%), Positives = 72/115 (62%)
Frame = +2
Query: 92 MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 271
MRYVASYLLAALGGN+SPSAKDIKKILDSVGIEADDDRLNKVISEL+GKNIEDVIAQGIG
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELHGKNIEDVIAQGIG 60
Query: 272 KLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 436
KL DDDMGFGLFD
Sbjct: 61 KLASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKEEKKEESEESDDDMGFGLFD 115
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 12,952,936
Number of extensions: 331394
Number of successful extensions: 1175
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1171
Number of HSP's successfully gapped: 3
Length of query: 183
Length of database: 17,681,374
Length adjustment: 96
Effective length of query: 87
Effective length of database: 14,504,926
Effective search space: 1261928562
Effective search space used: 1261928562
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012410
(549 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122445.2| PREDICTED: 60S acidic ribosomal protein P2-l... 126 6e-30
Alignment gi|XP_003127048.1| PREDICTED: 60S acidic ribosomal protein P2-l... 107 3e-24
>ref|XP_003122445.2| PREDICTED: 60S acidic ribosomal protein P2-like [Sus scrofa].
Length = 115
Score = 126 bits (317), Expect = 6e-30
Identities = 72/115 (62%), Positives = 72/115 (62%)
Frame = +2
Query: 92 MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 271
MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG
Sbjct: 1 MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 272 KLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 436
KL DDDMGFGLFD
Sbjct: 61 KLASVPSGGAVAVAAAPGSAAPAAGSAPAAAEEKKEEKKEESEESDDDMGFGLFD 115
>ref|XP_003127048.1| PREDICTED: 60S acidic ribosomal protein P2-like [Sus scrofa].
Length = 115
Score = 107 bits (268), Expect = 3e-24
Identities = 62/115 (53%), Positives = 65/115 (56%)
Frame = +2
Query: 92 MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 271
M Y+ SYLLAAL GNTSPS KDIKKILDSVGI+A DDRLNK ISELN KNIEDVIAQGIG
Sbjct: 1 MHYITSYLLAALEGNTSPSTKDIKKILDSVGIKAGDDRLNKFISELNEKNIEDVIAQGIG 60
Query: 272 KLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 436
K+ DDDMGFGLFD
Sbjct: 61 KVASRPAGRVVSITAAPGSAAPAAGSAPAAAEEKKEEKKEESEESDDDMGFGLFD 115
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 9,151,890
Number of extensions: 334324
Number of successful extensions: 806
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 804
Number of HSP's successfully gapped: 2
Length of query: 183
Length of database: 11,343,932
Length adjustment: 93
Effective length of query: 90
Effective length of database: 9,028,511
Effective search space: 812565990
Effective search space used: 812565990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012410
(549 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080296.3| 60S acidic ribosomal protein P2 [Mus musculus]. 124 3e-29
>ref|NP_080296.3| 60S acidic ribosomal protein P2 [Mus musculus].
Length = 115
Score = 124 bits (312), Expect = 3e-29
Identities = 70/115 (60%), Positives = 72/115 (62%)
Frame = +2
Query: 92 MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 271
MRYVASYLLAALGGN+SPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQG+G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVG 60
Query: 272 KLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 436
KL DDDMGFGLFD
Sbjct: 61 KLASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 10,785,867
Number of extensions: 206319
Number of successful extensions: 975
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 973
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 15,617,559
Length adjustment: 95
Effective length of query: 88
Effective length of database: 12,764,139
Effective search space: 1123244232
Effective search space used: 1123244232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012410
(549 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000995.1| 60S acidic ribosomal protein P2 [Homo sapiens]. 125 3e-29
>ref|NP_000995.1| 60S acidic ribosomal protein P2 [Homo sapiens].
Length = 115
Score = 125 bits (313), Expect = 3e-29
Identities = 71/115 (61%), Positives = 72/115 (62%)
Frame = +2
Query: 92 MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 271
MRYVASYLLAALGGN+SPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 272 KLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 436
KL DDDMGFGLFD
Sbjct: 61 KLASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 12,733,800
Number of extensions: 240955
Number of successful extensions: 1093
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1089
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 18,297,164
Length adjustment: 96
Effective length of query: 87
Effective length of database: 15,132,620
Effective search space: 1316537940
Effective search space used: 1316537940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012410
(549 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 351 3e-94
Sscrofa_Chr02 250 7e-64
>Sscrofa_Chr06
|| Length = 157765593
Score = 351 bits (177), Expect = 3e-94
Identities = 252/277 (90%)
Strand = Plus / Minus
Query: 87 ccgagatgcgttacgtcgcttcctacctgctggccgccctcgggggcaatacttctccta 146
||||||||| |||| || |||||||||||||||||||||| | ||||||||| |||||||
Sbjct: 33613355 ccgagatgcattacatcacttcctacctgctggccgcccttgagggcaatacctctccta 33613296
Query: 147 gcgccaaggacatcaagaagatcctggacagcgtgggcatcgaggcggacgacgatcggc 206
|| |||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||
Sbjct: 33613295 gcaccaaggacatcaagaagatcctggacagtgtgggcatcaaggcgggcgatgatcggc 33613236
Query: 207 tcaacaaggtcatcagtgagttgaacgggaagaacatcgaggacgtcattgcccagggca 266
|||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 33613235 tcaacaagttcatcagtgagttgaacgagaagaacattgaggacgtcattgcccagggca 33613176
Query: 267 ttggcaagctggccagcgtaccttctggcggggctgtggctgtcgccgctgccccagggt 326
|||||||| |||||||| |||| ||||| ||| |||| | || | |||||||||||||
Sbjct: 33613175 ttggcaaggtggccagcagacctgctggcagggttgtgtccatcactgctgccccagggt 33613116
Query: 327 ctgcagctcctgctgcaggttctgccccagctgcagc 363
|||||||||||||||||||||||||||||||||||||
Sbjct: 33613115 ctgcagctcctgctgcaggttctgccccagctgcagc 33613079
Score = 125 bits (63), Expect = 3e-26
Identities = 70/71 (98%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 404 tcagacgacgacatgggcttcggcttgtttgactagagtcctgct-ccctgcaaataaaa 462
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 33613038 tcagacgacgacatgggcttcggcttgtttgactagagtcctgctgccctgcaaataaaa 33612979
Query: 463 accctttgtac 473
|||||||||||
Sbjct: 33612978 accctttgtac 33612968
>Sscrofa_Chr02
|| Length = 162569375
Score = 250 bits (126), Expect = 7e-64
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 91 gatgcgttacgtcgcttcctacctgctggccgccctcgggggcaatacttctcctagcgc 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166204 gatgcgttacgtcgcttcctacctgctggccgccctcgggggcaatacttctcctagcgc 166145
Query: 151 caaggacatcaagaagatcctggacagcgtgggcatcgaggcggacgacgatcggctcaa 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166144 caaggacatcaagaagatcctggacagcgtgggcatcgaggcggacgacgatcggctcaa 166085
Query: 211 caaggt 216
||||||
Sbjct: 166084 caaggt 166079
Score = 198 bits (100), Expect = 2e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 263 ggcattggcaagctggccagcgtaccttctggcggggctgtggctgtcgccgctgcccca 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164852 ggcattggcaagctggccagcgtaccttctggcggggctgtggctgtcgccgctgcccca 164793
Query: 323 gggtctgcagctcctgctgcaggttctgccccagctgcag 362
||||||||||||||||||||||||||||||||||||||||
Sbjct: 164792 gggtctgcagctcctgctgcaggttctgccccagctgcag 164753
Score = 143 bits (72), Expect = 1e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 404 tcagacgacgacatgggcttcggcttgtttgactagagtcctgctccctgcaaataaaaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164602 tcagacgacgacatgggcttcggcttgtttgactagagtcctgctccctgcaaataaaaa 164543
Query: 464 ccctttgtacgt 475
||||||||||||
Sbjct: 164542 ccctttgtacgt 164531
Score = 117 bits (59), Expect = 7e-24
Identities = 62/63 (98%)
Strand = Plus / Minus
Query: 29 tcttgctttctgtccctgacgccgccgaggtcgcacgcgcgaggcctttctgccgccgcc 88
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166459 tcttcctttctgtccctgacgccgccgaggtcgcacgcgcgaggcctttctgccgccgcc 166400
Query: 89 gag 91
|||
Sbjct: 166399 gag 166397
Score = 103 bits (52), Expect = 1e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 213 aggtcatcagtgagttgaacgggaagaacatcgaggacgtcattgcccaggg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165427 aggtcatcagtgagttgaacgggaagaacatcgaggacgtcattgcccaggg 165376
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 10,098,137
Number of extensions: 336
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 7
Length of query: 549
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 528
Effective length of database: 2,808,413,156
Effective search space: 1482842146368
Effective search space used: 1482842146368
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)