Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012416
(1180 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535385.2| PREDICTED: similar to aldo-keto reductase famil... 608 e-174
Alignment gi|XP_855252.1| PREDICTED: similar to aldo-keto reductase famil... 194 1e-49
Alignment gi|XP_858412.1| PREDICTED: similar to potassium voltage-gated c... 83 6e-16
Alignment gi|XP_546746.2| PREDICTED: similar to potassium voltage-gated c... 83 6e-16
Alignment gi|XP_858333.1| PREDICTED: similar to Voltage-gated potassium c... 83 6e-16
Alignment gi|XP_854823.1| PREDICTED: similar to Voltage-gated potassium c... 82 8e-16
Alignment gi|XP_858294.1| PREDICTED: similar to potassium voltage-gated c... 74 4e-13
Alignment gi|XP_849235.1| PREDICTED: similar to potassium voltage-gated c... 74 4e-13
Alignment gi|XP_858174.1| PREDICTED: similar to potassium voltage-gated c... 72 8e-13
Alignment gi|XP_546601.2| PREDICTED: similar to potassium voltage-gated c... 72 8e-13
>ref|XP_535385.2| PREDICTED: similar to aldo-keto reductase family 7, member A5
(aflatoxin aldehyde reductase) [Canis familiaris].
Length = 371
Score = 608 bits (1568), Expect = e-174
Identities = 295/345 (85%), Positives = 314/345 (91%), Gaps = 3/345 (0%)
Frame = +2
Query: 101 AASAAVMSRPL---RATSGSPARPATVLGTMEMGRRMDAPASAAAVRAFLQRGYTELDTA 271
AA+AA MSRPL RA SG+PARPATVLGTMEMGRRMDA ASAAAVRAFL+RG+TELDTA
Sbjct: 27 AAAAAAMSRPLSPPRAASGTPARPATVLGTMEMGRRMDAAASAAAVRAFLERGHTELDTA 86
Query: 272 FMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEGRSLKPDSLRSQLETSLQRLQCPR 451
FMYSDGQSESI C VKIATKANPWEG+SLKPDSLR+QL+TSL+RLQC R
Sbjct: 87 FMYSDGQSESILGGLGLGLRGGHCTVKIATKANPWEGKSLKPDSLRTQLDTSLKRLQCSR 146
Query: 452 VDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNGWILPT 631
VDLFYLHAPDH TPVEETLRACHQL+QE KFVELGLSNYAAWEVAEICTLCRSNGW+LPT
Sbjct: 147 VDLFYLHAPDHDTPVEETLRACHQLYQEDKFVELGLSNYAAWEVAEICTLCRSNGWVLPT 206
Query: 632 VYQGMYNATTRQVETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYEDKDEKQPLGRFFGN 811
VYQGMYNATTRQVETELFPCL+HFGLRFYAYNPLAGGLLTGKYKYEDKD KQP+GRFFGN
Sbjct: 207 VYQGMYNATTRQVETELFPCLRHFGLRFYAYNPLAGGLLTGKYKYEDKDGKQPVGRFFGN 266
Query: 812 SWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGDHGDAVI 991
+WAE YRNRFWK+HHF+AIALVEKALQAAYG+SAPSMTSAALRW+YHHSQLQG GDAVI
Sbjct: 267 NWAETYRNRFWKEHHFEAIALVEKALQAAYGSSAPSMTSAALRWLYHHSQLQGARGDAVI 326
Query: 992 LGMSSLEQLEQN
Animal-Genome cDNA 20110601C-012416
Animal-Genome cDNA 20110601C-012416
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012416
(1180 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095419.1| aflatoxin B1 aldehyde reductase member 2 [Bo... 626 e-179
Alignment gi|XP_001255495.3| PREDICTED: aldo-keto reductase family 7, mem... 589 e-168
Alignment gi|XP_002685838.1| PREDICTED: aldo-keto reductase family 7, mem... 516 e-146
Alignment gi|NP_001014406.1| voltage-gated potassium channel subunit beta... 83 5e-16
Alignment gi|NP_001014405.1| voltage-gated potassium channel subunit beta... 83 5e-16
Alignment gi|NP_001020507.1| voltage-gated potassium channel subunit beta... 81 2e-15
Alignment gi|NP_001075096.1| voltage-gated potassium channel subunit beta... 75 1e-13
>ref|NP_001095419.1| aflatoxin B1 aldehyde reductase member 2 [Bos taurus].
Length = 369
Score = 626 bits (1615), Expect = e-179
Identities = 302/350 (86%), Positives = 318/350 (90%)
Frame = +2
Query: 77 PRQSEARPAASAAVMSRPLRATSGSPARPATVLGTMEMGRRMDAPASAAAVRAFLQRGYT 256
P+Q AR AA+A MSR RA SGSPARPATVLGTMEMGRRMD+PASAAAVRAFL+RG+
Sbjct: 20 PQQPGARTAAAANAMSRSPRAASGSPARPATVLGTMEMGRRMDSPASAAAVRAFLERGHA 79
Query: 257 ELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEGRSLKPDSLRSQLETSLQR 436
ELDTAFMYSDG+SESI C KIATKANPWEG+SLKPDSLRSQLETSLQR
Sbjct: 80 ELDTAFMYSDGRSESILGGLGLGLGGSGCTAKIATKANPWEGKSLKPDSLRSQLETSLQR 139
Query: 437 LQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNG 616
LQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNG
Sbjct: 140 LQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNG 199
Query: 617 WILPTVYQGMYNATTRQVETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYEDKDEKQPLG 796
WILPTVYQGMYNATTRQVETEL PCL+HFGLRFYAYNPLAGGLLTG+Y+YEDKD KQPLG
Sbjct: 200 WILPTVYQGMYNATTRQVETELLPCLRHFGLRFYAYNPLAGGLLTGRYQYEDKDGKQPLG 259
Query: 797 RFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGDH 976
RFFGNSWAE+YRNR+WK+HHFK IALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQG H
Sbjct: 260 RFFGNSWAEVYRNRYWKEHHFKGIALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGAH 319
Query: 977 GDAVILGMSSLEQLEQNLAATEGGPLEPTVVQAFDQAWHMVCHECPNYFR 1126
GDAVILGMSSLEQLE+NLAATE G LEP VVQAFDQAW +V H+CPNYFR
Sbjct: 320 GDAVILGMSSLEQLEENLAATEEGALEPAVVQAFDQAWRLVAHDCPNYFR 369
>ref|XP_001255495.3| PREDICTED: aldo-keto reductase family 7, member A3 (aflatoxin
aldehyde reductase) [Bos taurus].
Length = 458
Score = 589 bits (1519), Expect = e-168
Identities = 283/341 (82%), Positives = 302/341 (88%)
Frame = +2
Query: 104 ASAAVMSRPLRATSGSPARPATVLGTMEMGRRMDAPASAAAVRAFLQRGYTELDTAFMYS 283
A M++P G P RPATVLG MEMGRRMD P+SAAAVRAFL+RG+TE+DTAF+Y+
Sbjct: 118 AHPLAMAQPQSYPRGVPTRPATVLGAMEMGRRMDVPSSAAAVRAFLERGHTEIDTAFVYA 177
Query: 284 DGQSESIXXXXXXXXXXXDCRVKIATKANPWEGRSLKPDSLRSQLETSLQRLQCPRVDLF 463
DGQSESI C+VKIATKANP E SLKPDSLRSQLETSLQRL+CP VDLF
Sbjct: 178 DGQSESILGGLGLGLGGSGCKVKIATKANPLEENSLKPDSLRSQLETSLQRLRCPCVDLF 237
Query: 464 YLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNGWILPTVYQG 643
YLH PDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNGWILPTVYQG
Sbjct: 238 YLHLPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNGWILPTVYQG 297
Query: 644 MYNATTRQVETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYEDKDEKQPLGRFFGNSWAE 823
MYNATTRQVETEL PCL+HFGLRFYAYNPLAGGLLTG+Y+YEDKD KQPLGRFFGNSWAE
Sbjct: 298 MYNATTRQVETELLPCLRHFGLRFYAYNPLAGGLLTGRYQYEDKDGKQPLGRFFGNSWAE 357
Query: 824 IYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGDHGDAVILGMS 1003
+YRNR+WK+HHFK IALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQG HGDAVILGMS
Sbjct: 358 VYRNRYWKEHHFKGIALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGAHGDAVILGMS 417
Query: 1004 SLEQLEQNLAATEGGPLEPTVVQAFDQAWHMVCHECPNYFR 1126
SLEQLE+NLAATE G LEP VVQAFDQAW +V H+CPNYFR
Sbjct: 418 SLEQLEENLAATEEGALEPAVVQAFDQAWRLVAHDCPNYFR 458
>ref|XP_002685838.1| PREDICTED: aldo-keto reductase family 7, member A3 (aflatoxin
aldehyde reductase) [Bos taurus].
Length = 466
Score = 516 bits (1330), Expect = e-146
Identities = 262/351 (74%), Positives = 281/351 (80%), Gaps = 10/351 (2%)
Frame = +2
Query: 104 ASAAVMSRPLRATSGSPARPATVLGTMEMGRRMDAPASAAAVRAFLQRGYTELDTAFMYS 283
A M++P G P RPATVLG MEMGRRMD P+SAAAVRAFL+RG+TE+DTAF+Y+
Sbjct: 118 AHPLAMAQPQSYPRGVPTRPATVLGAMEMGRRMDVPSSAAAVRAFLERGHTEIDTAFVYA 177
Query: 284 DGQSESIXXXXXXXXXXXDCRVKIATKANPWEGRSLKPDSLRSQLETSLQRLQCPRVDLF 463
DGQSESI C+VKIATKANP E SLKPDSLRSQLETSLQRL+CP VDLF
Sbjct: 178 DGQSESILGGLGLGLGGSGCKVKIATKANPLEENSLKPDSLRSQLETSLQRLRCPCVDLF 237
Query: 464 YLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNGWILPTVYQG 643
YLH PDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNGWILPTVYQG
Sbjct: 238 YLHLPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNGWILPTVYQG 297
Query: 644 MYNATTRQVETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYEDKDEKQPLGRFFGNS--- 814
MYNATTRQVETEL PCL+HFGLRFYAYNPLA LL G + LG G+
Sbjct: 298 MYNATTRQVETELLPCLRHFGLRFYAYNPLADPLLEG--TLAPPCYRGSLGGLLGSGPLC 355
Query: 815 ----WAEIYR---NRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGD 973
YR + +WK+HHFK IALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQG
Sbjct: 356 DPVVLTPCYRPLLSSYWKEHHFKGIALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGA 415
Query: 974 HGDAVILGMSSLEQLEQNLAATEGGPLEPTVVQAFDQAWHMVCHECPNYFR 1126
HGDAVILGMSSLEQLE+NLAATE GPLEP VVQAFDQAW +V H+CPNYFR
Sbjct: 416 HGDAVILGMSSLEQLEENLAATEEGPLEPAVVQAFDQAWRLVAHDCPNYFR 466
>ref|NP_001014406.1| voltage-gated potassium channel subunit beta-2 isoform 2 [Bos
taurus].
Length = 353
Score = 82.8 bits (203), Expect = 5e-16
Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 7/285 (2%)
Frame = +2
Query: 248 GYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSLRS 412
G DTA +Y+ G++E + + I TK W G R L +
Sbjct: 66 GINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF-WGGKAETERGLSRKHIIE 124
Query: 413 QLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEI 592
L+ SL+RLQ VD+ + + PD TP+EET+RA + +G + G S +++ E+ E
Sbjct: 125 GLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEA 184
Query: 593 CTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYE 769
++ R I P Q Y+ R+ VE +L G+ ++PLA G+++G KY+
Sbjct: 185 YSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSG--KYD 242
Query: 770 DKDEKQPLGRFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMY 949
G W +++ + + A + K LQA ++ A+ W
Sbjct: 243 SGIPPYSRASLKGYQW---LKDKILSEEGRRQQAKL-KELQAIAERLGCTLPQLAIAWC- 297
Query: 950 HHSQLQGDHGDAVILGMSSLEQLEQNLAATEGGP-LEPTVVQAFD 1081
L+ + +V+LG SS +QL +N+ A + P L +++ D
Sbjct: 298 ----LRNEGVSSVLLGASSADQLMENIGAIQVLPKLSSSIIHEID 338
>ref|NP_001014405.1| voltage-gated potassium channel subunit beta-2 isoform 1 [Bos
taurus].
Length = 367
Score = 82.8 bits (203), Expect = 5e-16
Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 7/285 (2%)
Frame = +2
Query: 248 GYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSLRS 412
G DTA +Y+ G++E + + I TK W G R L +
Sbjct: 80 GINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF-WGGKAETERGLSRKHIIE 138
Query: 413 QLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEI 592
L+ SL+RLQ VD+ + + PD TP+EET+RA + +G + G S +++ E+ E
Sbjct: 139 GLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEA 198
Query: 593 CTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYE 769
++ R I P Q Y+ R+ VE +L G+ ++PLA G+++G KY+
Sbjct: 199 YSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSG--KYD 256
Query: 770 DKDEKQPLGRFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMY 949
G W +++ + + A + K LQA ++ A+ W
Sbjct: 257 SGIPPYSRASLKGYQW---LKDKILSEEGRRQQAKL-KELQAIAERLGCTLPQLAIAWC- 311
Query: 950 HHSQLQGDHGDAVILGMSSLEQLEQNLAATEGGP-LEPTVVQAFD 1081
L+ + +V+LG SS +QL +N+ A + P L +++ D
Sbjct: 312 ----LRNEGVSSVLLGASSADQLMENIGAIQVLPKLSSSIIHEID 352
>ref|NP_001020507.1| voltage-gated potassium channel subunit beta-1 [Bos taurus].
Length = 401
Score = 80.9 bits (198), Expect = 2e-15
Identities = 74/276 (26%), Positives = 126/276 (45%), Gaps = 9/276 (3%)
Frame = +2
Query: 242 QRGYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSL 406
+ G DTA +Y+ G++E I + I TK W G R L +
Sbjct: 112 ESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLY-WGGKAETERGLSRKHI 170
Query: 407 RSQLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVA 586
L+ SLQRLQ VD+ + + PD TP+EE +RA + +G + G S ++A E+
Sbjct: 171 IEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIM 230
Query: 587 EICTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYK 763
E ++ R I P Q Y+ R+ VE +L G+ ++PLA G+++GKY
Sbjct: 231 EAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYG 290
Query: 764 YEDKDEKQPLGRFFGNSWAE---IYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAA 934
+ + + + W + + +Q+ K ++ + + L G + P + A
Sbjct: 291 NGVPESSRASLKCY--QWLKERIVSEEGRKQQNKLKDLSPIAERL----GCTLPQL---A 341
Query: 935 LRWMYHHSQLQGDHGDAVILGMSSLEQLEQNLAATE 1042
+ W L+ + +V+LG S+ EQL +NL A +
Sbjct: 342 VAWC-----LRNEGVSSVLLGSSTPEQLIENLGAIQ 372
>ref|NP_001075096.1| voltage-gated potassium channel subunit beta-3 [Bos taurus].
Length = 404
Score = 74.7 bits (182), Expect = 1e-13
Identities = 88/341 (25%), Positives = 145/341 (42%), Gaps = 26/341 (7%)
Frame = +2
Query: 98 PAASAAVMSRP------LRATSG------------SPARPATV-LGT-MEMGRRMDAPAS 217
P A AAV+ RP LR ++G S R + + LGT + G ++ +
Sbjct: 51 PKARAAVVPRPPAPAGALRESTGRGTGMKYRNLGKSGLRVSCLGLGTWVTFGSQISDETA 110
Query: 218 AAAVRAFLQRGYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG----- 382
+ + G DTA +Y+ G++E I TK W G
Sbjct: 111 EDVLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIF-WGGQAETE 169
Query: 383 RSLKPDSLRSQLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLS 562
R L + L SL+RLQ VD+ + + D +P+EE +RA + +G + G S
Sbjct: 170 RGLSRKHIIEGLRGSLERLQLGYVDIVFANRSDPNSPMEEIVRAMTYVINQGLALYWGTS 229
Query: 563 NYAAWEVAEICTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAG 739
+ A E+ E ++ R I P Q ++ R+ VE +L G+ ++PLA
Sbjct: 230 RWGAAEIMEAYSMARQFNLIPPVCEQAEHHLFQREKVEMQLPELYHKIGVGSVTWSPLAC 289
Query: 740 GLLTGKYKYEDKDEKQPLGRFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPS 919
GL+T KY D + + G W ++++ + K A V L A+ +
Sbjct: 290 GLITSKYDGRVSDTCRVTIK--GYQW---HKDKVQSEDGKKQQAKVMDLLPIAHQLGC-T 343
Query: 920 MTSAALRWMYHHSQLQGDHGDAVILGMSSLEQLEQNLAATE 1042
+ A+ W L+ + +V+LG+SS EQL ++L A +
Sbjct: 344 VAQLAIAWC-----LRSEGVSSVLLGVSSAEQLVEHLGALQ 379
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,560,681
Number of extensions: 1634399
Number of successful extensions: 8190
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 8127
Number of HSP's successfully gapped: 7
Length of query: 393
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 289
Effective length of database: 14,240,222
Effective search space: 4115424158
Effective search space used: 4115424158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
LAATEGGPLEPTVVQAFDQAWHMVCHECPNYFR 1126
LGMSS+EQL QNLAATE GPL P VVQAFDQAWH+V HECPNYFR
Sbjct: 327 LGMSSVEQLAQNLAATEEGPLAPAVVQAFDQAWHLVAHECPNYFR 371
>ref|XP_855252.1| PREDICTED: similar to aldo-keto reductase family 7, member A5
(aflatoxin aldehyde reductase) [Canis familiaris].
Length = 154
Score = 194 bits (494), Expect = 1e-49
Identities = 92/109 (84%), Positives = 99/109 (90%)
Frame = +2
Query: 347 VKIATKANPWEGRSLKPDSLRSQLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQL 526
VKIATKANP + S KP+SLR+QL+TSL+RLQC RVDLFYLHAPDH TPVEETLRACHQL
Sbjct: 42 VKIATKANPLDENSRKPESLRAQLDTSLKRLQCSRVDLFYLHAPDHDTPVEETLRACHQL 101
Query: 527 HQEGKFVELGLSNYAAWEVAEICTLCRSNGWILPTVYQGMYNATTRQVE 673
HQE KFVELGLSNYAAWEVAEICTLCRSNGW+LPTVYQG YNA TR+ E
Sbjct: 102 HQEDKFVELGLSNYAAWEVAEICTLCRSNGWVLPTVYQGTYNAITRRGE 150
>ref|XP_858412.1| PREDICTED: similar to potassium voltage-gated channel, shaker-related
subfamily, beta member 2 isoform 2 isoform 8 [Canis
familiaris].
Length = 398
Score = 82.8 bits (203), Expect = 6e-16
Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 7/285 (2%)
Frame = +2
Query: 248 GYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSLRS 412
G DTA +Y+ G++E + + I TK W G R L +
Sbjct: 111 GINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF-WGGKAETERGLSRKHIIE 169
Query: 413 QLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEI 592
L+ SL+RLQ VD+ + + PD TP+EET+RA + +G + G S +++ E+ E
Sbjct: 170 GLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEA 229
Query: 593 CTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYE 769
++ R I P Q Y+ R+ VE +L G+ ++PLA G+++G KY+
Sbjct: 230 YSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSG--KYD 287
Query: 770 DKDEKQPLGRFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMY 949
G W +++ + + A + K LQA ++ A+ W
Sbjct: 288 SGIPPYSRASLKGYQW---LKDKILSEEGRRQQAKL-KELQAIAERLGCTLPQLAIAWC- 342
Query: 950 HHSQLQGDHGDAVILGMSSLEQLEQNLAATEGGP-LEPTVVQAFD 1081
L+ + +V+LG SS +QL +N+ A + P L +++ D
Sbjct: 343 ----LRNEGVSSVLLGASSADQLMENIGAIQVLPKLSSSIIHEID 383
>ref|XP_546746.2| PREDICTED: similar to potassium voltage-gated channel, shaker-related
subfamily, beta member 2 isoform 2 isoform 1 [Canis
familiaris].
Length = 353
Score = 82.8 bits (203), Expect = 6e-16
Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 7/285 (2%)
Frame = +2
Query: 248 GYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSLRS 412
G DTA +Y+ G++E + + I TK W G R L +
Sbjct: 66 GINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF-WGGKAETERGLSRKHIIE 124
Query: 413 QLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEI 592
L+ SL+RLQ VD+ + + PD TP+EET+RA + +G + G S +++ E+ E
Sbjct: 125 GLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEA 184
Query: 593 CTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYE 769
++ R I P Q Y+ R+ VE +L G+ ++PLA G+++G KY+
Sbjct: 185 YSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSG--KYD 242
Query: 770 DKDEKQPLGRFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMY 949
G W +++ + + A + K LQA ++ A+ W
Sbjct: 243 SGIPPYSRASLKGYQW---LKDKILSEEGRRQQAKL-KELQAIAERLGCTLPQLAIAWC- 297
Query: 950 HHSQLQGDHGDAVILGMSSLEQLEQNLAATEGGP-LEPTVVQAFD 1081
L+ + +V+LG SS +QL +N+ A + P L +++ D
Sbjct: 298 ----LRNEGVSSVLLGASSADQLMENIGAIQVLPKLSSSIIHEID 338
>ref|XP_858333.1| PREDICTED: similar to Voltage-gated potassium channel beta-2 subunit
(K(+) channel beta-2 subunit) (Kv-beta-2) (HKvbeta2)
isoform 7 [Canis familiaris].
Length = 367
Score = 82.8 bits (203), Expect = 6e-16
Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 7/285 (2%)
Frame = +2
Query: 248 GYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSLRS 412
G DTA +Y+ G++E + + I TK W G R L +
Sbjct: 80 GINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF-WGGKAETERGLSRKHIIE 138
Query: 413 QLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEI 592
L+ SL+RLQ VD+ + + PD TP+EET+RA + +G + G S +++ E+ E
Sbjct: 139 GLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEA 198
Query: 593 CTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYE 769
++ R I P Q Y+ R+ VE +L G+ ++PLA G+++G KY+
Sbjct: 199 YSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSG--KYD 256
Query: 770 DKDEKQPLGRFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMY 949
G W +++ + + A + K LQA ++ A+ W
Sbjct: 257 SGIPPYSRASLKGYQW---LKDKILSEEGRRQQAKL-KELQAIAERLGCTLPQLAIAWC- 311
Query: 950 HHSQLQGDHGDAVILGMSSLEQLEQNLAATEGGP-LEPTVVQAFD 1081
L+ + +V+LG SS +QL +N+ A + P L +++ D
Sbjct: 312 ----LRNEGVSSVLLGASSADQLMENIGAIQVLPKLSSSIIHEID 352
>ref|XP_854823.1| PREDICTED: similar to Voltage-gated potassium channel beta-1 subunit
(K(+) channel beta-1 subunit) (Kv-beta-1) [Canis
familiaris].
Length = 401
Score = 82.4 bits (202), Expect = 8e-16
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 9/276 (3%)
Frame = +2
Query: 242 QRGYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSL 406
+ G DTA +Y+ G++E I + I TK W G R L +
Sbjct: 112 ESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLY-WGGKAETERGLSRKHI 170
Query: 407 RSQLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVA 586
L+ SLQRLQ VD+ + + PD TP+EE +RA + +G + G S ++A E+
Sbjct: 171 IEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIM 230
Query: 587 EICTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYK 763
E ++ R I P Q Y+ R+ VE +L G+ ++PLA G+++GKY
Sbjct: 231 EAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYG 290
Query: 764 YEDKDEKQPLGRFFGNSWAE---IYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAA 934
+ + + + W + + +Q+ K +A + + L G + P + A
Sbjct: 291 NGVPESSRASLKCY--QWLKERIVSEEGRKQQNKLKDLAPIAERL----GCTLPQL---A 341
Query: 935 LRWMYHHSQLQGDHGDAVILGMSSLEQLEQNLAATE 1042
+ W L+ + +V+LG S+ EQL +NL A +
Sbjct: 342 VAWC-----LRNEGVSSVLLGSSTPEQLVENLGAIQ 372
>ref|XP_858294.1| PREDICTED: similar to potassium voltage-gated channel, shaker-related
subfamily, beta member 2 isoform 2 isoform 6 [Canis
familiaris].
Length = 368
Score = 73.6 bits (179), Expect = 4e-13
Identities = 75/300 (25%), Positives = 128/300 (42%), Gaps = 22/300 (7%)
Frame = +2
Query: 248 GYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSLRS 412
G DTA +Y+ G++E + + I TK W G R L +
Sbjct: 66 GINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF-WGGKAETERGLSRKHIIE 124
Query: 413 QLETSLQRLQCPRVDLFYLHAPDHGTP---------------VEETLRACHQLHQEGKFV 547
L+ SL+RLQ VD+ + + PD TP +EET+RA + +G +
Sbjct: 125 GLKASLERLQLEYVDVVFANRPDPNTPMEGDPFSSSKSRTFIIEETVRAMTHVINQGMAM 184
Query: 548 ELGLSNYAAWEVAEICTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAY 724
G S +++ E+ E ++ R I P Q Y+ R+ VE +L G+ +
Sbjct: 185 YWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTW 244
Query: 725 NPLAGGLLTGKYKYEDKDEKQPLGRFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYG 904
+PLA G+++G KY+ G W +++ + + A + K LQA
Sbjct: 245 SPLACGIVSG--KYDSGIPPYSRASLKGYQW---LKDKILSEEGRRQQAKL-KELQAIAE 298
Query: 905 TSAPSMTSAALRWMYHHSQLQGDHGDAVILGMSSLEQLEQNLAATEGGP-LEPTVVQAFD 1081
++ A+ W L+ + +V+LG SS +QL +N+ A + P L +++ D
Sbjct: 299 RLGCTLPQLAIAWC-----LRNEGVSSVLLGASSADQLMENIGAIQVLPKLSSSIIHEID 353
>ref|XP_849235.1| PREDICTED: similar to potassium voltage-gated channel, shaker-related
subfamily, beta member 2 isoform 2 isoform 2 [Canis
familiaris].
Length = 415
Score = 73.6 bits (179), Expect = 4e-13
Identities = 75/300 (25%), Positives = 128/300 (42%), Gaps = 22/300 (7%)
Frame = +2
Query: 248 GYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSLRS 412
G DTA +Y+ G++E + + I TK W G R L +
Sbjct: 113 GINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF-WGGKAETERGLSRKHIIE 171
Query: 413 QLETSLQRLQCPRVDLFYLHAPDHGTP---------------VEETLRACHQLHQEGKFV 547
L+ SL+RLQ VD+ + + PD TP +EET+RA + +G +
Sbjct: 172 GLKASLERLQLEYVDVVFANRPDPNTPMEGDPFSSSKSRTFIIEETVRAMTHVINQGMAM 231
Query: 548 ELGLSNYAAWEVAEICTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAY 724
G S +++ E+ E ++ R I P Q Y+ R+ VE +L G+ +
Sbjct: 232 YWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTW 291
Query: 725 NPLAGGLLTGKYKYEDKDEKQPLGRFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYG 904
+PLA G+++G KY+ G W +++ + + A + K LQA
Sbjct: 292 SPLACGIVSG--KYDSGIPPYSRASLKGYQW---LKDKILSEEGRRQQAKL-KELQAIAE 345
Query: 905 TSAPSMTSAALRWMYHHSQLQGDHGDAVILGMSSLEQLEQNLAATEGGP-LEPTVVQAFD 1081
++ A+ W L+ + +V+LG SS +QL +N+ A + P L +++ D
Sbjct: 346 RLGCTLPQLAIAWC-----LRNEGVSSVLLGASSADQLMENIGAIQVLPKLSSSIIHEID 400
>ref|XP_858174.1| PREDICTED: similar to potassium voltage-gated channel, shaker-related
subfamily, beta member 2 isoform 2 isoform 4 [Canis
familiaris].
Length = 494
Score = 72.4 bits (176), Expect = 8e-13
Identities = 70/258 (27%), Positives = 114/258 (44%), Gaps = 25/258 (9%)
Frame = +2
Query: 383 RSLKPDSLRSQLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLS 562
R L + L+ SL+RLQ VD+ + + PD TP+EET+RA + +G + G S
Sbjct: 229 RGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTS 288
Query: 563 NYAAWEVAEICTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAG 739
+++ E+ E ++ R I P Q Y+ R+ VE +L G+ ++PLA
Sbjct: 289 RWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLAC 348
Query: 740 GLLTGKYKYEDKDEKQPLGRFFGNSW------AEIYRNRFWKQHHFKAIA------LVEK 883
G+++G KY+ G W +E R + K +AIA L +
Sbjct: 349 GIVSG--KYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQL 406
Query: 884 ALQAAYGTSAPS-----------MTSAALRWMYHHSQLQGDHGDAVILGMSSLEQLEQNL 1030
A+ + G A S S A W L+ + +V+LG SS +QL +N+
Sbjct: 407 AIGLSTGPGAMSGGPCPGCVSLTSGSTAPAWC-----LRNEGVSSVLLGASSADQLMENI 461
Query: 1031 AATEGGP-LEPTVVQAFD 1081
A + P L +++ D
Sbjct: 462 GAIQVLPKLSSSIIHEID 479
>ref|XP_546601.2| PREDICTED: similar to potassium voltage-gated channel, shaker-related
subfamily, beta member 3 [Canis familiaris].
Length = 404
Score = 72.4 bits (176), Expect = 8e-13
Identities = 79/312 (25%), Positives = 132/312 (42%), Gaps = 9/312 (2%)
Frame = +2
Query: 173 LGT-MEMGRRMDAPASAAAVRAFLQRGYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRV 349
LGT + G ++ + + + G DTA +Y+ G++E
Sbjct: 95 LGTWVTFGSQISDETAEDVLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSY 154
Query: 350 KIATKANPWEG-----RSLKPDSLRSQLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRA 514
I TK W G R L + L+ SL RLQ VD+ + + D +P+EE +RA
Sbjct: 155 VITTKIF-WGGQAETERGLSRKHIIEGLQGSLDRLQLGYVDIVFANRSDPNSPMEEIVRA 213
Query: 515 CHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNGWILPTVYQGMYNATTRQ-VETELFPC 691
+ +G + G S + A E+ E ++ R I P Q ++ R+ VE +L
Sbjct: 214 MTYVINQGLALYWGTSRWGAAEIMEAYSMARQFNLIPPVCEQAEHHLFQREKVEMQLPEL 273
Query: 692 LKHFGLRFYAYNPLAGGLLTGKYKYEDKDEKQPLGRFFGNSW-AEIYRNRFWKQHHFKAI 868
G+ ++PL+ GL+T KY + D + G W + ++ K+ K +
Sbjct: 274 YHKIGVGSVTWSPLSCGLITSKYDGQVPDTCR--ATIKGYQWLKDKVQSEGSKKQQAKVL 331
Query: 869 ALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGDHGDAVILGMSSLEQLEQNLAATEG- 1045
L+ A Q ++ A+ W L+ + +V+LG+SS EQL ++L A +
Sbjct: 332 DLLPIAHQLGC-----TVAQLAIAWC-----LRSEGVSSVLLGVSSAEQLLEHLGALQVL 381
Query: 1046 GPLEPTVVQAFD 1081
L P V D
Sbjct: 382 SQLTPQTVMEID 393
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,589,801
Number of extensions: 1680067
Number of successful extensions: 8367
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 8309
Number of HSP's successfully gapped: 13
Length of query: 393
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 288
Effective length of database: 15,374,224
Effective search space: 4427776512
Effective search space used: 4427776512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012416
(1180 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230751.1| aldo-keto reductase family 7, member A2 (afl... 693 0.0
Alignment gi|NP_001098764.1| voltage-gated potassium channel subunit beta... 80 2e-15
Alignment gi|XP_003132001.1| PREDICTED: voltage-gated potassium channel s... 77 2e-14
Alignment gi|XP_003356189.1| PREDICTED: voltage-gated potassium channel s... 53 3e-07
>ref|NP_001230751.1| aldo-keto reductase family 7, member A2 (aflatoxin aldehyde
reductase) [Sus scrofa].
Length = 369
Score = 693 bits (1789), Expect = 0.0
Identities = 337/350 (96%), Positives = 338/350 (96%)
Frame = +2
Query: 77 PRQSEARPAASAAVMSRPLRATSGSPARPATVLGTMEMGRRMDAPASAAAVRAFLQRGYT 256
PRQSEARPAASAAVMSRPLRATSGSPARPATVLGTMEMGRRMDAPASAAAVRAFLQRGYT
Sbjct: 20 PRQSEARPAASAAVMSRPLRATSGSPARPATVLGTMEMGRRMDAPASAAAVRAFLQRGYT 79
Query: 257 ELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEGRSLKPDSLRSQLETSLQR 436
ELDTAFMYSDGQSESI DCRVKIATKANPWEGRSLKPDSLRSQLETSLQR
Sbjct: 80 ELDTAFMYSDGQSESILGGLGLGLGGGDCRVKIATKANPWEGRSLKPDSLRSQLETSLQR 139
Query: 437 LQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNG 616
LQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNG
Sbjct: 140 LQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNG 199
Query: 617 WILPTVYQGMYNATTRQVETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYEDKDEKQPLG 796
WILPTVYQGMYNATTRQVETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYEDKDEKQPLG
Sbjct: 200 WILPTVYQGMYNATTRQVETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYEDKDEKQPLG 259
Query: 797 RFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGDH 976
RFFGNSWAEIYRNRFWK+HHFKAIALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGDH
Sbjct: 260 RFFGNSWAEIYRNRFWKEHHFKAIALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGDH 319
Query: 977 GDAVILGMSSLEQLEQNLAATEGGPLEPTVVQAFDQAWHMVCHECPNYFR 1126
GDAVILGMSSLEQLEQNLAATEGGPLEPTVVQAFDQAWHMV HECPNYFR
Sbjct: 320 GDAVILGMSSLEQLEQNLAATEGGPLEPTVVQAFDQAWHMVAHECPNYFR 369
>ref|NP_001098764.1| voltage-gated potassium channel subunit beta-1 [Sus scrofa].
Length = 401
Score = 80.5 bits (197), Expect = 2e-15
Identities = 75/276 (27%), Positives = 125/276 (45%), Gaps = 9/276 (3%)
Frame = +2
Query: 242 QRGYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSL 406
+ G DTA +Y+ G++E I + I TK W G R L +
Sbjct: 112 ESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLY-WGGKAETERGLSRKHI 170
Query: 407 RSQLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVA 586
L+ SLQRLQ VD+ + + PD TP+EE +RA + +G + G S ++A E+
Sbjct: 171 IEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIM 230
Query: 587 EICTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYK 763
E ++ R I P Q Y+ R+ VE +L G+ ++PLA G+++GKY
Sbjct: 231 EAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYG 290
Query: 764 YEDKDEKQPLGRFFGNSWAE---IYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAA 934
+ + + + W + I +Q+ K + + + L G + P + A
Sbjct: 291 NGVPESSRASLKCY--QWLKERIISEEGRKQQNKLKDLLPIAERL----GCTLPQL---A 341
Query: 935 LRWMYHHSQLQGDHGDAVILGMSSLEQLEQNLAATE 1042
+ W L+ + +V+LG S+ EQL +NL A +
Sbjct: 342 VAWC-----LRNEGVSSVLLGSSTPEQLIENLGAIQ 372
>ref|XP_003132001.1| PREDICTED: voltage-gated potassium channel subunit beta-3 [Sus
scrofa].
Length = 405
Score = 77.0 bits (188), Expect = 2e-14
Identities = 82/313 (26%), Positives = 135/313 (43%), Gaps = 10/313 (3%)
Frame = +2
Query: 173 LGT-MEMGRRMDAPASAAAVRAFLQRGYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRV 349
LGT + G ++ + + + G DTA +Y+ G++E
Sbjct: 95 LGTWVTFGSQISDETAEDVLTVAYEHGINLFDTAEVYAAGKAERTLGNILKNKGWRRSSY 154
Query: 350 KIATKANPWEG-----RSLKPDSLRSQLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRA 514
IATK W G R L + L SL+RLQ VD+ + + D +P+EE +RA
Sbjct: 155 VIATKIF-WGGQAETERGLSRKHIIEGLRGSLERLQLGYVDIVFANRSDPNSPMEEIVRA 213
Query: 515 CHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNGWILPTVYQGMYNATTRQ-VETELFPC 691
+ +G + G S + A E+ E ++ R I P Q ++ R+ VET+L
Sbjct: 214 MTYVINQGLALYWGTSRWGAAEIMEAYSMARQFNLIPPVCEQAEHHLFQREKVETQLPEL 273
Query: 692 LKHFGLRFYAYNPLAGGLLTGKYKYEDKDEKQPLGRFFGNSWAE--IYRNRFWKQHHFKA 865
G+ ++PLA GL+T KY + D + + G W + ++ K+ K
Sbjct: 274 YHKIGVGSVTWSPLACGLITSKYDGQVPDTCKVTVK--GYQWLKDRKVQSEDGKKQQAKV 331
Query: 866 IALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGDHGDAVILGMSSLEQLEQNLAATEG 1045
+ L+ A Q ++ A+ W L+ + +V+LG+SS EQL ++L A +
Sbjct: 332 MDLLPIAHQLGC-----TVAQLAIAWC-----LRSEGVSSVLLGVSSAEQLMEHLGALQV 381
Query: 1046 -GPLEPTVVQAFD 1081
L P V D
Sbjct: 382 LSQLTPQTVMEID 394
>ref|XP_003356189.1| PREDICTED: voltage-gated potassium channel subunit beta-2-like [Sus
scrofa].
Length = 296
Score = 53.1 bits (126), Expect = 3e-07
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 1/187 (0%)
Frame = +2
Query: 485 GTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNGWILPTVYQGMYNATTR 664
GT +ET+RA + +G + G S +++ E+ E ++ R I P Q Y+ R
Sbjct: 2 GTTPDETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQR 61
Query: 665 Q-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYEDKDEKQPLGRFFGNSWAEIYRNRF 841
+ VE +L G+ ++PLA G+++G KY+ G W +++
Sbjct: 62 EKVEVQLPELFHKIGVGAMTWSPLACGIVSG--KYDSGIPPYSRASLKGYQW---LKDKI 116
Query: 842 WKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGDHGDAVILGMSSLEQLE 1021
+ + A + K LQA ++ A+ W L+ + +V+LG SS +QL
Sbjct: 117 LSEEGRRQQAKL-KELQAIAERLGCTLPQLAIAWC-----LRNEGVSSVLLGASSADQLM 170
Query: 1022 QNLAATE 1042
+N+ A +
Sbjct: 171 ENIGAIQ 177
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,733,363
Number of extensions: 1063239
Number of successful extensions: 5360
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5314
Number of HSP's successfully gapped: 4
Length of query: 393
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,829,335
Effective search space: 2578165820
Effective search space used: 2578165820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012416
(1180 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079613.3| aflatoxin B1 aldehyde reductase member 2 [Mus m... 599 e-171
Alignment gi|NP_034728.2| voltage-gated potassium channel subunit beta-2 ... 83 4e-16
Alignment gi|NP_034727.3| voltage-gated potassium channel subunit beta-1 ... 81 2e-15
Alignment gi|NP_034729.3| voltage-gated potassium channel subunit beta-3 ... 71 1e-12
>ref|NP_079613.3| aflatoxin B1 aldehyde reductase member 2 [Mus musculus].
Length = 367
Score = 599 bits (1544), Expect = e-171
Identities = 291/349 (83%), Positives = 310/349 (88%), Gaps = 2/349 (0%)
Frame = +2
Query: 86 SEARPAASAAVMSRPL--RATSGSPARPATVLGTMEMGRRMDAPASAAAVRAFLQRGYTE 259
S RP A MSRP RA SG+P RPATVLGTMEMGRRMDA ASAA+VRAFL+RG++E
Sbjct: 23 SVGRPLA----MSRPPPPRAASGAPLRPATVLGTMEMGRRMDASASAASVRAFLERGHSE 78
Query: 260 LDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEGRSLKPDSLRSQLETSLQRL 439
LDTAFMY DGQSE+I DC VKIATKANPWEG+SLKPDS+RSQLETSL+RL
Sbjct: 79 LDTAFMYCDGQSENILGGLGLGLGSGDCTVKIATKANPWEGKSLKPDSIRSQLETSLKRL 138
Query: 440 QCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNGW 619
QCPRVDLFYLHAPDH TPVEETLRACHQLHQEGKFVELGLSNYA+WEVAEICTLC+SNGW
Sbjct: 139 QCPRVDLFYLHAPDHSTPVEETLRACHQLHQEGKFVELGLSNYASWEVAEICTLCKSNGW 198
Query: 620 ILPTVYQGMYNATTRQVETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYEDKDEKQPLGR 799
ILPTVYQGMYNATTRQVE EL PCL+HFGLRFYAYNPLAGGLLTGKYKYEDKD KQP+GR
Sbjct: 199 ILPTVYQGMYNATTRQVEAELLPCLRHFGLRFYAYNPLAGGLLTGKYKYEDKDGKQPVGR 258
Query: 800 FFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGDHG 979
FFGN+WAE YRNRFWK+HHF+AIALVEKALQ YGT+AP MTSAALRWMYHHSQLQG G
Sbjct: 259 FFGNNWAETYRNRFWKEHHFEAIALVEKALQTTYGTNAPRMTSAALRWMYHHSQLQGTRG 318
Query: 980 DAVILGMSSLEQLEQNLAATEGGPLEPTVVQAFDQAWHMVCHECPNYFR 1126
DAVILGMSSLEQLEQNLAATE GPLEP VV+AFDQAW+MV HECPNYFR
Sbjct: 319 DAVILGMSSLEQLEQNLAATEEGPLEPAVVEAFDQAWNMVAHECPNYFR 367
>ref|NP_034728.2| voltage-gated potassium channel subunit beta-2 [Mus musculus].
Length = 367
Score = 83.2 bits (204), Expect = 4e-16
Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 7/285 (2%)
Frame = +2
Query: 248 GYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSLRS 412
G DTA +Y+ G++E + + I TK W G R L +
Sbjct: 80 GINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF-WGGKAETERGLSRKHIIE 138
Query: 413 QLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEI 592
L+ SL+RLQ VD+ + + PD TP+EET+RA + +G + G S +++ E+ E
Sbjct: 139 GLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEA 198
Query: 593 CTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYE 769
++ R I P Q Y+ R+ VE +L G+ ++PLA G+++G KY+
Sbjct: 199 YSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSG--KYD 256
Query: 770 DKDEKQPLGRFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMY 949
G W +++ + + A + K LQA ++ A+ W
Sbjct: 257 SGIPPYSRASLKGYQW---LKDKILSEEGRRQQAKL-KELQAIAERLGCTLPQLAIAWC- 311
Query: 950 HHSQLQGDHGDAVILGMSSLEQLEQNLAATEGGP-LEPTVVQAFD 1081
L+ + +V+LG S+ EQL +N+ A + P L ++V D
Sbjct: 312 ----LRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVHEID 352
>ref|NP_034727.3| voltage-gated potassium channel subunit beta-1 [Mus musculus].
Length = 401
Score = 80.9 bits (198), Expect = 2e-15
Identities = 74/276 (26%), Positives = 126/276 (45%), Gaps = 9/276 (3%)
Frame = +2
Query: 242 QRGYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSL 406
+ G DTA +Y+ G++E I + I TK W G R L +
Sbjct: 112 ESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLY-WGGKAETERGLSRKHI 170
Query: 407 RSQLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVA 586
L+ SLQRLQ VD+ + + PD TP+EE +RA + +G + G S ++A E+
Sbjct: 171 IEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIM 230
Query: 587 EICTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYK 763
E ++ R I P Q Y+ R+ VE +L G+ ++PLA G+++GKY
Sbjct: 231 EAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYG 290
Query: 764 YEDKDEKQPLGRFFGNSWAE---IYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAA 934
+ + + + W + + +Q+ K ++ + + L G + P + A
Sbjct: 291 NGVPESSRASLKCY--QWLKERIVSEEGRKQQNKLKDLSPIAERL----GCTLPQL---A 341
Query: 935 LRWMYHHSQLQGDHGDAVILGMSSLEQLEQNLAATE 1042
+ W L+ + +V+LG S+ EQL +NL A +
Sbjct: 342 VAWC-----LRNEGVSSVLLGSSTPEQLIENLGAIQ 372
>ref|NP_034729.3| voltage-gated potassium channel subunit beta-3 [Mus musculus].
Length = 404
Score = 71.2 bits (173), Expect = 1e-12
Identities = 75/298 (25%), Positives = 128/298 (42%), Gaps = 8/298 (2%)
Frame = +2
Query: 173 LGT-MEMGRRMDAPASAAAVRAFLQRGYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRV 349
LGT + G ++ + + + G DTA +Y+ G++E
Sbjct: 95 LGTWVTFGSQISDETAEDLLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSY 154
Query: 350 KIATKANPWEG-----RSLKPDSLRSQLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRA 514
I TK W G R L + L+ SL RLQ VD+ + + D +P+EE +RA
Sbjct: 155 VITTKIF-WGGQAETERGLSRKHIIEGLQGSLDRLQLEYVDIVFANRSDPNSPMEEIVRA 213
Query: 515 CHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNGWILPTVYQGMYNATTRQ-VETELFPC 691
+ +G + G S ++A E+ E ++ R I P Q + R+ VE +L
Sbjct: 214 MTYVINQGLALYWGTSRWSAAEIMEAYSMARQFNLIPPVCEQAENHFFQREKVEMQLPEL 273
Query: 692 LKHFGLRFYAYNPLAGGLLTGKYKYEDKDEKQPLGRFFGNSW-AEIYRNRFWKQHHFKAI 868
G+ ++PLA GL+T KY D + + G W E ++ K+ + +
Sbjct: 274 YHKIGVGSVTWSPLACGLITSKYDGRVPDTCKATVK--GYQWLKEKVQSEEGKKQQARVM 331
Query: 869 ALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGDHGDAVILGMSSLEQLEQNLAATE 1042
L+ A Q ++ A+ W L+ + +V+LG+SS EQL ++L + +
Sbjct: 332 DLLPTARQLGC-----TVAQLAIAWC-----LRSEGVSSVLLGVSSAEQLMEHLGSLQ 379
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,223,094
Number of extensions: 1334986
Number of successful extensions: 6545
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6420
Number of HSP's successfully gapped: 4
Length of query: 393
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 290
Effective length of database: 12,523,851
Effective search space: 3631916790
Effective search space used: 3631916790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012416
(1180 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003680.2| aflatoxin B1 aldehyde reductase member 2 [Homo ... 602 e-172
Alignment gi|NP_036199.2| aflatoxin B1 aldehyde reductase member 3 [Homo ... 570 e-163
Alignment gi|NP_751891.1| voltage-gated potassium channel subunit beta-1 ... 81 2e-15
Alignment gi|NP_003462.2| voltage-gated potassium channel subunit beta-1 ... 81 2e-15
Alignment gi|NP_751892.1| voltage-gated potassium channel subunit beta-1 ... 81 2e-15
Alignment gi|NP_001186792.1| voltage-gated potassium channel subunit beta... 80 5e-15
Alignment gi|NP_001186790.1| voltage-gated potassium channel subunit beta... 80 5e-15
Alignment gi|NP_001186789.1| voltage-gated potassium channel subunit beta... 80 5e-15
Alignment gi|NP_742128.1| voltage-gated potassium channel subunit beta-2 ... 80 5e-15
Alignment gi|NP_003627.1| voltage-gated potassium channel subunit beta-2 ... 80 5e-15
>ref|NP_003680.2| aflatoxin B1 aldehyde reductase member 2 [Homo sapiens].
Length = 359
Score = 602 bits (1551), Expect = e-172
Identities = 290/343 (84%), Positives = 309/343 (90%)
Frame = +2
Query: 98 PAASAAVMSRPLRATSGSPARPATVLGTMEMGRRMDAPASAAAVRAFLQRGYTELDTAFM 277
P A A MSRP P R A+VLGTMEMGRRMDAPASAAAVRAFL+RG+TELDTAFM
Sbjct: 23 PEARALAMSRP------PPPRVASVLGTMEMGRRMDAPASAAAVRAFLERGHTELDTAFM 76
Query: 278 YSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEGRSLKPDSLRSQLETSLQRLQCPRVD 457
YSDGQSE+I DCRVKIATKANPW+G+SLKPDS+RSQLETSL+RLQCP+VD
Sbjct: 77 YSDGQSETILGGLGLGLGGGDCRVKIATKANPWDGKSLKPDSVRSQLETSLKRLQCPQVD 136
Query: 458 LFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNGWILPTVY 637
LFYLHAPDHGTPVEETL AC +LHQEGKFVELGLSNYA+WEVAEICTLC+SNGWILPTVY
Sbjct: 137 LFYLHAPDHGTPVEETLHACQRLHQEGKFVELGLSNYASWEVAEICTLCKSNGWILPTVY 196
Query: 638 QGMYNATTRQVETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYEDKDEKQPLGRFFGNSW 817
QGMYNATTRQVETELFPCL+HFGLRFYAYNPLAGGLLTGKYKYEDKD KQP+GRFFGNSW
Sbjct: 197 QGMYNATTRQVETELFPCLRHFGLRFYAYNPLAGGLLTGKYKYEDKDGKQPVGRFFGNSW 256
Query: 818 AEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGDHGDAVILG 997
AE YRNRFWK+HHF+AIALVEKALQAAYG SAPS+TSAALRWMYHHSQLQG HGDAVILG
Sbjct: 257 AETYRNRFWKEHHFEAIALVEKALQAAYGASAPSVTSAALRWMYHHSQLQGAHGDAVILG 316
Query: 998 MSSLEQLEQNLAATEGGPLEPTVVQAFDQAWHMVCHECPNYFR 1126
MSSLEQLEQNLAATE GPLEP VV AF+QAWH+V HECPNYFR
Sbjct: 317 MSSLEQLEQNLAATEEGPLEPAVVDAFNQAWHLVAHECPNYFR 359
>ref|NP_036199.2| aflatoxin B1 aldehyde reductase member 3 [Homo sapiens].
Length = 331
Score = 570 bits (1469), Expect = e-163
Identities = 276/336 (82%), Positives = 295/336 (87%)
Frame = +2
Query: 119 MSRPLRATSGSPARPATVLGTMEMGRRMDAPASAAAVRAFLQRGYTELDTAFMYSDGQSE 298
MSR L S ARPATVLG MEMGRRMDAP SAA RAFL+RG+TE+DTAF+YS+GQSE
Sbjct: 1 MSRQL-----SRARPATVLGAMEMGRRMDAPTSAAVTRAFLERGHTEIDTAFVYSEGQSE 55
Query: 299 SIXXXXXXXXXXXDCRVKIATKANPWEGRSLKPDSLRSQLETSLQRLQCPRVDLFYLHAP 478
+I DCRVKI TKA P G SLKPDSLR QLETSL+RLQCPRVDLFYLH P
Sbjct: 56 TILGGLGLRLGGSDCRVKIDTKAIPLFGNSLKPDSLRFQLETSLKRLQCPRVDLFYLHMP 115
Query: 479 DHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCRSNGWILPTVYQGMYNAT 658
DH TPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLC+SNGWILPTVYQGMYNA
Sbjct: 116 DHSTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCKSNGWILPTVYQGMYNAI 175
Query: 659 TRQVETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYEDKDEKQPLGRFFGNSWAEIYRNR 838
TRQVETELFPCL+HFGLRFYA+NPLAGGLLTGKYKYEDK+ KQP+GRFFGN+WAE+YRNR
Sbjct: 176 TRQVETELFPCLRHFGLRFYAFNPLAGGLLTGKYKYEDKNGKQPVGRFFGNTWAEMYRNR 235
Query: 839 FWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMYHHSQLQGDHGDAVILGMSSLEQL 1018
+WK+HHF+ IALVEKALQAAYG SAPSMTSA LRWMYHHSQLQG HGDAVILGMSSLEQL
Sbjct: 236 YWKEHHFEGIALVEKALQAAYGASAPSMTSATLRWMYHHSQLQGAHGDAVILGMSSLEQL 295
Query: 1019 EQNLAATEGGPLEPTVVQAFDQAWHMVCHECPNYFR 1126
EQNLAA E GPLEP VV AF+QAWH+V HECPNYFR
Sbjct: 296 EQNLAAAEEGPLEPAVVDAFNQAWHLVTHECPNYFR 331
>ref|NP_751891.1| voltage-gated potassium channel subunit beta-1 isoform 3 [Homo
sapiens].
Length = 401
Score = 80.9 bits (198), Expect = 2e-15
Identities = 74/276 (26%), Positives = 126/276 (45%), Gaps = 9/276 (3%)
Frame = +2
Query: 242 QRGYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSL 406
+ G DTA +Y+ G++E I + I TK W G R L +
Sbjct: 112 ESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLY-WGGKAETERGLSRKHI 170
Query: 407 RSQLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVA 586
L+ SLQRLQ VD+ + + PD TP+EE +RA + +G + G S ++A E+
Sbjct: 171 IEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIM 230
Query: 587 EICTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYK 763
E ++ R I P Q Y+ R+ VE +L G+ ++PLA G+++GKY
Sbjct: 231 EAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYG 290
Query: 764 YEDKDEKQPLGRFFGNSWAE---IYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAA 934
+ + + + W + + +Q+ K ++ + + L G + P + A
Sbjct: 291 NGVPESSRASLKCY--QWLKERIVSEEGRKQQNKLKDLSPIAERL----GCTLPQL---A 341
Query: 935 LRWMYHHSQLQGDHGDAVILGMSSLEQLEQNLAATE 1042
+ W L+ + +V+LG S+ EQL +NL A +
Sbjct: 342 VAWC-----LRNEGVSSVLLGSSTPEQLIENLGAIQ 372
>ref|NP_003462.2| voltage-gated potassium channel subunit beta-1 isoform 2 [Homo
sapiens].
Length = 408
Score = 80.9 bits (198), Expect = 2e-15
Identities = 74/276 (26%), Positives = 126/276 (45%), Gaps = 9/276 (3%)
Frame = +2
Query: 242 QRGYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSL 406
+ G DTA +Y+ G++E I + I TK W G R L +
Sbjct: 119 ESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLY-WGGKAETERGLSRKHI 177
Query: 407 RSQLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVA 586
L+ SLQRLQ VD+ + + PD TP+EE +RA + +G + G S ++A E+
Sbjct: 178 IEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIM 237
Query: 587 EICTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYK 763
E ++ R I P Q Y+ R+ VE +L G+ ++PLA G+++GKY
Sbjct: 238 EAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYG 297
Query: 764 YEDKDEKQPLGRFFGNSWAE---IYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAA 934
+ + + + W + + +Q+ K ++ + + L G + P + A
Sbjct: 298 NGVPESSRASLKCY--QWLKERIVSEEGRKQQNKLKDLSPIAERL----GCTLPQL---A 348
Query: 935 LRWMYHHSQLQGDHGDAVILGMSSLEQLEQNLAATE 1042
+ W L+ + +V+LG S+ EQL +NL A +
Sbjct: 349 VAWC-----LRNEGVSSVLLGSSTPEQLIENLGAIQ 379
>ref|NP_751892.1| voltage-gated potassium channel subunit beta-1 isoform 1 [Homo
sapiens].
Length = 419
Score = 80.9 bits (198), Expect = 2e-15
Identities = 74/276 (26%), Positives = 126/276 (45%), Gaps = 9/276 (3%)
Frame = +2
Query: 242 QRGYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSL 406
+ G DTA +Y+ G++E I + I TK W G R L +
Sbjct: 130 ESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLY-WGGKAETERGLSRKHI 188
Query: 407 RSQLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVA 586
L+ SLQRLQ VD+ + + PD TP+EE +RA + +G + G S ++A E+
Sbjct: 189 IEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIM 248
Query: 587 EICTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYK 763
E ++ R I P Q Y+ R+ VE +L G+ ++PLA G+++GKY
Sbjct: 249 EAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYG 308
Query: 764 YEDKDEKQPLGRFFGNSWAE---IYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAA 934
+ + + + W + + +Q+ K ++ + + L G + P + A
Sbjct: 309 NGVPESSRASLKCY--QWLKERIVSEEGRKQQNKLKDLSPIAERL----GCTLPQL---A 359
Query: 935 LRWMYHHSQLQGDHGDAVILGMSSLEQLEQNLAATE 1042
+ W L+ + +V+LG S+ EQL +NL A +
Sbjct: 360 VAWC-----LRNEGVSSVLLGSSTPEQLIENLGAIQ 390
>ref|NP_001186792.1| voltage-gated potassium channel subunit beta-2 isoform 4 [Homo
sapiens].
Length = 300
Score = 79.7 bits (195), Expect = 5e-15
Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 7/285 (2%)
Frame = +2
Query: 248 GYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSLRS 412
G DTA +Y+ G++E + + I TK W G R L +
Sbjct: 13 GINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF-WGGKAETERGLSRKHIIE 71
Query: 413 QLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEI 592
L+ SL+RLQ VD+ + + PD TP+EET+RA + +G + G S +++ E+ E
Sbjct: 72 GLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEA 131
Query: 593 CTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYE 769
++ R P Q Y+ R+ VE +L G+ ++PLA G+++G KY+
Sbjct: 132 YSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSG--KYD 189
Query: 770 DKDEKQPLGRFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMY 949
G W +++ + + A + K LQA ++ A+ W
Sbjct: 190 SGIPPYSRASLKGYQW---LKDKILSEEGRRQQAKL-KELQAIAERLGCTLPQLAIAWC- 244
Query: 950 HHSQLQGDHGDAVILGMSSLEQLEQNLAATEGGP-LEPTVVQAFD 1081
L+ + +V+LG S+ +QL +N+ A + P L +++ D
Sbjct: 245 ----LRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEID 285
>ref|NP_001186790.1| voltage-gated potassium channel subunit beta-2 isoform 1 [Homo
sapiens].
Length = 367
Score = 79.7 bits (195), Expect = 5e-15
Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 7/285 (2%)
Frame = +2
Query: 248 GYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSLRS 412
G DTA +Y+ G++E + + I TK W G R L +
Sbjct: 80 GINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF-WGGKAETERGLSRKHIIE 138
Query: 413 QLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEI 592
L+ SL+RLQ VD+ + + PD TP+EET+RA + +G + G S +++ E+ E
Sbjct: 139 GLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEA 198
Query: 593 CTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYE 769
++ R P Q Y+ R+ VE +L G+ ++PLA G+++G KY+
Sbjct: 199 YSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSG--KYD 256
Query: 770 DKDEKQPLGRFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMY 949
G W +++ + + A + K LQA ++ A+ W
Sbjct: 257 SGIPPYSRASLKGYQW---LKDKILSEEGRRQQAKL-KELQAIAERLGCTLPQLAIAWC- 311
Query: 950 HHSQLQGDHGDAVILGMSSLEQLEQNLAATEGGP-LEPTVVQAFD 1081
L+ + +V+LG S+ +QL +N+ A + P L +++ D
Sbjct: 312 ----LRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEID 352
>ref|NP_001186789.1| voltage-gated potassium channel subunit beta-2 isoform 1 [Homo
sapiens].
Length = 367
Score = 79.7 bits (195), Expect = 5e-15
Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 7/285 (2%)
Frame = +2
Query: 248 GYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSLRS 412
G DTA +Y+ G++E + + I TK W G R L +
Sbjct: 80 GINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF-WGGKAETERGLSRKHIIE 138
Query: 413 QLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEI 592
L+ SL+RLQ VD+ + + PD TP+EET+RA + +G + G S +++ E+ E
Sbjct: 139 GLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEA 198
Query: 593 CTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYE 769
++ R P Q Y+ R+ VE +L G+ ++PLA G+++G KY+
Sbjct: 199 YSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSG--KYD 256
Query: 770 DKDEKQPLGRFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMY 949
G W +++ + + A + K LQA ++ A+ W
Sbjct: 257 SGIPPYSRASLKGYQW---LKDKILSEEGRRQQAKL-KELQAIAERLGCTLPQLAIAWC- 311
Query: 950 HHSQLQGDHGDAVILGMSSLEQLEQNLAATEGGP-LEPTVVQAFD 1081
L+ + +V+LG S+ +QL +N+ A + P L +++ D
Sbjct: 312 ----LRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEID 352
>ref|NP_742128.1| voltage-gated potassium channel subunit beta-2 isoform 2 [Homo
sapiens].
Length = 353
Score = 79.7 bits (195), Expect = 5e-15
Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 7/285 (2%)
Frame = +2
Query: 248 GYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSLRS 412
G DTA +Y+ G++E + + I TK W G R L +
Sbjct: 66 GINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF-WGGKAETERGLSRKHIIE 124
Query: 413 QLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEI 592
L+ SL+RLQ VD+ + + PD TP+EET+RA + +G + G S +++ E+ E
Sbjct: 125 GLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEA 184
Query: 593 CTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYE 769
++ R P Q Y+ R+ VE +L G+ ++PLA G+++G KY+
Sbjct: 185 YSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSG--KYD 242
Query: 770 DKDEKQPLGRFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMY 949
G W +++ + + A + K LQA ++ A+ W
Sbjct: 243 SGIPPYSRASLKGYQW---LKDKILSEEGRRQQAKL-KELQAIAERLGCTLPQLAIAWC- 297
Query: 950 HHSQLQGDHGDAVILGMSSLEQLEQNLAATEGGP-LEPTVVQAFD 1081
L+ + +V+LG S+ +QL +N+ A + P L +++ D
Sbjct: 298 ----LRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEID 338
>ref|NP_003627.1| voltage-gated potassium channel subunit beta-2 isoform 1 [Homo
sapiens].
Length = 367
Score = 79.7 bits (195), Expect = 5e-15
Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 7/285 (2%)
Frame = +2
Query: 248 GYTELDTAFMYSDGQSESIXXXXXXXXXXXDCRVKIATKANPWEG-----RSLKPDSLRS 412
G DTA +Y+ G++E + + I TK W G R L +
Sbjct: 80 GINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF-WGGKAETERGLSRKHIIE 138
Query: 413 QLETSLQRLQCPRVDLFYLHAPDHGTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEI 592
L+ SL+RLQ VD+ + + PD TP+EET+RA + +G + G S +++ E+ E
Sbjct: 139 GLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEA 198
Query: 593 CTLCRSNGWILPTVYQGMYNATTRQ-VETELFPCLKHFGLRFYAYNPLAGGLLTGKYKYE 769
++ R P Q Y+ R+ VE +L G+ ++PLA G+++G KY+
Sbjct: 199 YSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSG--KYD 256
Query: 770 DKDEKQPLGRFFGNSWAEIYRNRFWKQHHFKAIALVEKALQAAYGTSAPSMTSAALRWMY 949
G W +++ + + A + K LQA ++ A+ W
Sbjct: 257 SGIPPYSRASLKGYQW---LKDKILSEEGRRQQAKL-KELQAIAERLGCTLPQLAIAWC- 311
Query: 950 HHSQLQGDHGDAVILGMSSLEQLEQNLAATEGGP-LEPTVVQAFD 1081
L+ + +V+LG S+ +QL +N+ A + P L +++ D
Sbjct: 312 ----LRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEID 352
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,460,922
Number of extensions: 1630510
Number of successful extensions: 7957
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 7890
Number of HSP's successfully gapped: 12
Length of query: 393
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 288
Effective length of database: 14,835,944
Effective search space: 4272751872
Effective search space used: 4272751872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012416
(1180 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 688 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 688 bits (347), Expect = 0.0
Identities = 347/347 (100%)
Strand = Plus / Minus
Query: 1 gcgcgcaggcgccgatctcatgctgaacgccgtgtctcgagccgtggctcgtgctgccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71823718 gcgcgcaggcgccgatctcatgctgaacgccgtgtctcgagccgtggctcgtgctgccgt 71823659
Query: 61 ccgcagctcgcgtcgccccagacaatccgaggctcgccccgccgctagcgcagccgtcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71823658 ccgcagctcgcgtcgccccagacaatccgaggctcgccccgccgctagcgcagccgtcat 71823599
Query: 121 gtcccggcccctgcgggccacctcgggctccccagcccgacccgccacagttctgggcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71823598 gtcccggcccctgcgggccacctcgggctccccagcccgacccgccacagttctgggcac 71823539
Query: 181 catggagatggggcgccgcatggacgcgcccgccagcgccgcggccgtgcgtgccttcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71823538 catggagatggggcgccgcatggacgcgcccgccagcgccgcggccgtgcgtgccttcct 71823479
Query: 241 gcagcgcggctacactgagctggacactgccttcatgtacagcgacggccagtccgagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71823478 gcagcgcggctacactgagctggacactgccttcatgtacagcgacggccagtccgagag 71823419
Query: 301 catcctgggcggcctggggctcgggctgggcggcggcgactgcagag 347
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71823418 catcctgggcggcctggggctcgggctgggcggcggcgactgcagag 71823372
Score = 396 bits (200), Expect = e-107
Identities = 212/216 (98%)
Strand = Plus / Minus
Query: 965 cagggtgaccatggggacgctgtcatcctgggcatgtccagcctggagcagctggagcag 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71816714 cagggtgaccatggggacgctgtcatcctgggcatgtccagcctggagcagctggagcag 71816655
Query: 1025 aacttggcggccacagagggtgggcccctggagcccactgtggtgcaagcctttgaccaa 1084
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 71816654 aacttggcggccacagagggtgggcccctggagcccactgtggtgcaggcctttgaccaa 71816595
Query: 1085 gcctggcacatggtttgccatgaatgtcccaactacttccgctaggccccagcatggctc 1144
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71816594 gcctggcacatggttgcccatgaatgtcccaactacttccgctaggccccagcatggctc 71816535
Query: 1145 aggctgccagggtttcttccctttttgtccccttgt 1180
|||||||||||||||||||| |||||||||||||||
Sbjct: 71816534 aggctgccagggtttcttccttttttgtccccttgt 71816499
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Minus
Query: 346 agtgaaaatcgccaccaaagccaatccctgggaaggaaggtctctgaagcccgacagcct 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71820453 agtgaaaatcgccaccaaagccaatccctgggaaggaaggtctctgaagcccgacagcct 71820394
Query: 406 ccggtcccagctggagacgtcactgcagcggctgcagtgcccccgggtcgacctcttcta 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71820393 ccggtcccagctggagacgtcactgcagcggctgcagtgcccccgggtcgacctcttcta 71820334
Query: 466 tctacacgcacctgaccacggcacccccgtggaagagacgctgcgcgcctgccaccagct 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71820333 tctacacgcacctgaccacggcacccccgtggaagagacgctgcgcgcctgccaccagct 71820274
Query: 526 gcaccaggagg 536
|||||||||||
Sbjct: 71820273 gcaccaggagg 71820263
Score = 254 bits (128), Expect = 1e-64
Identities = 131/132 (99%)
Strand = Plus / Minus
Query: 837 ggttttggaagcagcaccatttcaaggctattgccctggtggagaaggccctgcaggctg 896
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71818146 ggttttggaaggagcaccatttcaaggctattgccctggtggagaaggccctgcaggctg 71818087
Query: 897 cctatggcaccagtgcccccagcatgacctcggctgccctgcggtggatgtaccaccact 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71818086 cctatggcaccagtgcccccagcatgacctcggctgccctgcggtggatgtaccaccact 71818027
Query: 957 cgcagctccagg 968
||||||||||||
Sbjct: 71818026 cgcagctccagg 71818015
Score = 214 bits (108), Expect = 8e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 534 agggcaagtttgtggagcttggcctctccaactatgctgcctgggaggtggccgagatct 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71820089 agggcaagtttgtggagcttggcctctccaactatgctgcctgggaggtggccgagatct 71820030
Query: 594 gtaccctgtgcaggagcaacggctggatcctgcctaccgtgtaccagg 641
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71820029 gtaccctgtgcaggagcaacggctggatcctgcctaccgtgtaccagg 71819982
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 737 gggggcctgctgaccggcaagtacaagtatgaggacaaggatgagaaacaacccctgggc 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71818832 gggggcctgctgaccggcaagtacaagtatgaggacaaggatgagaaacaacccctgggc 71818773
Query: 797 cgcttctttgggaacagctgggctgaaatctacaggaatcggt 839
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71818772 cgcttctttgggaacagctgggctgaaatctacaggaatcggt 71818730
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 638 cagggcatgtacaacgccaccacccggcaggtggaaacagagctcttcccctgcctcaaa 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71819179 cagggcatgtacaacgccaccacccggcaggtggaaacagagctcttcccctgcctcaaa 71819120
Query: 698 cactttggactgaggttctacgcctacaaccctctggctgg 738
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 71819119 cactttggactgaggttctacgcctacaaccctctggctgg 71819079
Score = 107 bits (54), Expect = 1e-20
Identities = 57/58 (98%)
Strand = Plus / Minus
Query: 1123 ccgctaggccccagcatggctcaggctgccagggtttcttccctttttgtccccttgt 1180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 71817731 ccgctaggccccagcatggctcaggctgccagggtttcttccttttttgtccccttgt 71817674
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,847,731
Number of extensions: 174
Number of successful extensions: 174
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 8
Length of query: 1180
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1159
Effective length of database: 2,808,413,156
Effective search space: 3254950847804
Effective search space used: 3254950847804
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)