BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012420
         (2497 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_856337.1| PREDICTED: similar to neurotrophic tyrosine kin...   920   0.0  
Alignment   gi|XP_848589.1| PREDICTED: similar to neurotrophic tyrosine kin...   900   0.0  
Alignment   gi|XP_856462.1| PREDICTED: similar to neurotrophic tyrosine kin...   900   0.0  
Alignment   gi|XP_856422.1| PREDICTED: similar to neurotrophic tyrosine kin...   900   0.0  
Alignment   gi|XP_541264.2| PREDICTED: similar to neurotrophic tyrosine kin...   900   0.0  
Alignment   gi|XP_851384.1| PREDICTED: similar to neurotrophic tyrosine kin...   241   3e-63
Alignment   gi|XP_851619.1| PREDICTED: similar to neurotrophic tyrosine kin...   197   4e-50
Alignment   gi|XP_547525.2| PREDICTED: similar to neurotrophic tyrosine kin...   197   4e-50
Alignment   gi|NP_001010950.1| neural cell adhesion molecule 1 [Canis lupus...    77   6e-14
Alignment   gi|XP_545681.1| PREDICTED: similar to leucine rich repeat neuro...    75   2e-13

>ref|XP_856337.1| PREDICTED: similar to neurotrophic tyrosine kinase, receptor, type 2
            isoform b precursor isoform 3 [Canis familiaris].
          Length = 477

 Score =  920 bits (2379), Expect = 0.0
 Identities = 440/476 (92%), Positives = 447/476 (93%)
 Frame = +1

Query: 643  MSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 822
            MSSWTRWHGPAMARLWGFCWL+VGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP
Sbjct: 1    MSSWTRWHGPAMARLWGFCWLVVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 60

Query: 823  STADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHI 1002
            ++ADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLK VAHKAFLKNSNLQHI
Sbjct: 61   NSADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKFVAHKAFLKNSNLQHI 120

Query: 1003 NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN 1182
            NFTRNKLT LSRKHFRHLDLSELILVGNPF CSCDIMWIKTLQETK S ETQDLYCL+E+
Sbjct: 121  NFTRNKLTSLSRKHFRHLDLSELILVGNPFTCSCDIMWIKTLQETKSSPETQDLYCLNES 180

Query: 1183 SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 1362
            SKNI LANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM
Sbjct: 181  SKNIPLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 240

Query: 1363 NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 1542
            NETS+ QGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH
Sbjct: 241  NETSHMQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 300

Query: 1543 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 1722
            WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK
Sbjct: 301  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 360

Query: 1723 LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 1902
            LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST
Sbjct: 361  LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 420

Query: 1903 DVADKTGREHLXXXXXXXXXXXXGFCXXXXXXXXXXARHSKFGMKGFVLFHKIPLD 2070
            DVADK+GREHL            GFC          ARHSKFGMKGFVLFHKIPLD
Sbjct: 421  DVADKSGREHLSVYAVVVIASVVGFCLLVMLFLLKLARHSKFGMKGFVLFHKIPLD 476


>ref|XP_848589.1| PREDICTED: similar to neurotrophic tyrosine kinase, receptor, type 2
            isoform a precursor isoform 2 [Canis familiaris].
          Length = 838

 Score =  900 bits (2326), Expect = 0.0
 Identities = 431/470 (91%), Positives = 438/470 (93%)
 Frame = +1

Query: 643  MSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 822
            MSSWTRWHGPAMARLWGFCWL+VGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP
Sbjct: 1    MSSWTRWHGPAMARLWGFCWLVVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 60

Query: 823  STADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHI 1002
            ++ADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLK VAHKAFLKNSNLQHI
Sbjct: 61   NSADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKFVAHKAFLKNSNLQHI 120

Query: 1003 NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN 1182
            NFTRNKLT LSRKHFRHLDLSELILVGNPF CSCDIMWIKTLQETK S ETQDLYCL+E+
Sbjct: 121  NFTRNKLTSLSRKHFRHLDLSELILVGNPFTCSCDIMWIKTLQETKSSPETQDLYCLNES 180

Query: 1183 SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 1362
            SKNI LANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM
Sbjct: 181  SKNIPLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 240

Query: 1363 NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 1542
            NETS+ QGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH
Sbjct: 241  NETSHMQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 300

Query: 1543 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 1722
            WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK
Sbjct: 301  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 360

Query: 1723 LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 1902
            LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST
Sbjct: 361  LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 420

Query: 1903 DVADKTGREHLXXXXXXXXXXXXGFCXXXXXXXXXXARHSKFGMKGFVLF 2052
            DVADK+GREHL            GFC          ARHSKFGMK F  F
Sbjct: 421  DVADKSGREHLSVYAVVVIASVVGFCLLVMLFLLKLARHSKFGMKDFSWF 470


>ref|XP_856462.1| PREDICTED: similar to neurotrophic tyrosine kinase, receptor, type 2
            isoform a precursor isoform 5 [Canis familiaris].
          Length = 897

 Score =  900 bits (2326), Expect = 0.0
 Identities = 431/470 (91%), Positives = 438/470 (93%)
 Frame = +1

Query: 643  MSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 822
            MSSWTRWHGPAMARLWGFCWL+VGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP
Sbjct: 1    MSSWTRWHGPAMARLWGFCWLVVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 60

Query: 823  STADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHI 1002
            ++ADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLK VAHKAFLKNSNLQHI
Sbjct: 61   NSADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKFVAHKAFLKNSNLQHI 120

Query: 1003 NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN 1182
            NFTRNKLT LSRKHFRHLDLSELILVGNPF CSCDIMWIKTLQETK S ETQDLYCL+E+
Sbjct: 121  NFTRNKLTSLSRKHFRHLDLSELILVGNPFTCSCDIMWIKTLQETKSSPETQDLYCLNES 180

Query: 1183 SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 1362
            SKNI LANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM
Sbjct: 181  SKNIPLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 240

Query: 1363 NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 1542
            NETS+ QGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH
Sbjct: 241  NETSHMQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 300

Query: 1543 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 1722
            WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK
Sbjct: 301  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 360

Query: 1723 LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 1902
            LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST
Sbjct: 361  LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 420

Query: 1903 DVADKTGREHLXXXXXXXXXXXXGFCXXXXXXXXXXARHSKFGMKGFVLF 2052
            DVADK+GREHL            GFC          ARHSKFGMK F  F
Sbjct: 421  DVADKSGREHLSVYAVVVIASVVGFCLLVMLFLLKLARHSKFGMKDFSWF 470


>ref|XP_856422.1| PREDICTED: similar to neurotrophic tyrosine kinase, receptor, type 2
            isoform a precursor isoform 4 [Canis familiaris].
          Length = 859

 Score =  900 bits (2326), Expect = 0.0
 Identities = 431/470 (91%), Positives = 438/470 (93%)
 Frame = +1

Query: 643  MSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 822
            MSSWTRWHGPAMARLWGFCWL+VGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP
Sbjct: 1    MSSWTRWHGPAMARLWGFCWLVVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 60

Query: 823  STADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHI 1002
            ++ADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLK VAHKAFLKNSNLQHI
Sbjct: 61   NSADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKFVAHKAFLKNSNLQHI 120

Query: 1003 NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN 1182
            NFTRNKLT LSRKHFRHLDLSELILVGNPF CSCDIMWIKTLQETK S ETQDLYCL+E+
Sbjct: 121  NFTRNKLTSLSRKHFRHLDLSELILVGNPFTCSCDIMWIKTLQETKSSPETQDLYCLNES 180

Query: 1183 SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 1362
            SKNI LANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM
Sbjct: 181  SKNIPLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 240

Query: 1363 NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 1542
            NETS+ QGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH
Sbjct: 241  NETSHMQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 300

Query: 1543 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 1722
            WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK
Sbjct: 301  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 360

Query: 1723 LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 1902
            LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST
Sbjct: 361  LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 420

Query: 1903 DVADKTGREHLXXXXXXXXXXXXGFCXXXXXXXXXXARHSKFGMKGFVLF 2052
            DVADK+GREHL            GFC          ARHSKFGMK F  F
Sbjct: 421  DVADKSGREHLSVYAVVVIASVVGFCLLVMLFLLKLARHSKFGMKDFSWF 470


>ref|XP_541264.2| PREDICTED: similar to neurotrophic tyrosine kinase, receptor, type 2
            isoform 1 [Canis familiaris].
          Length = 537

 Score =  900 bits (2325), Expect = 0.0
 Identities = 430/466 (92%), Positives = 437/466 (93%)
 Frame = +1

Query: 643  MSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 822
            MSSWTRWHGPAMARLWGFCWL+VGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP
Sbjct: 1    MSSWTRWHGPAMARLWGFCWLVVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 60

Query: 823  STADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHI 1002
            ++ADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLK VAHKAFLKNSNLQHI
Sbjct: 61   NSADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKFVAHKAFLKNSNLQHI 120

Query: 1003 NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN 1182
            NFTRNKLT LSRKHFRHLDLSELILVGNPF CSCDIMWIKTLQETK S ETQDLYCL+E+
Sbjct: 121  NFTRNKLTSLSRKHFRHLDLSELILVGNPFTCSCDIMWIKTLQETKSSPETQDLYCLNES 180

Query: 1183 SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 1362
            SKNI LANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM
Sbjct: 181  SKNIPLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 240

Query: 1363 NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 1542
            NETS+ QGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH
Sbjct: 241  NETSHMQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 300

Query: 1543 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 1722
            WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK
Sbjct: 301  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 360

Query: 1723 LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 1902
            LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST
Sbjct: 361  LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 420

Query: 1903 DVADKTGREHLXXXXXXXXXXXXGFCXXXXXXXXXXARHSKFGMKG 2040
            DVADK+GREHL            GFC          ARHSKFGMKG
Sbjct: 421  DVADKSGREHLSVYAVVVIASVVGFCLLVMLFLLKLARHSKFGMKG 466


>ref|XP_851384.1| PREDICTED: similar to neurotrophic tyrosine kinase, receptor, type 3
            isoform b precursor [Canis familiaris].
          Length = 762

 Score =  241 bits (614), Expect = 3e-63
 Identities = 130/326 (39%), Positives = 189/326 (57%), Gaps = 13/326 (3%)
 Frame = +1

Query: 850  EIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHINFTRNKLTI 1029
            E +I N + L  +N  D+E Y GL+ LTI +SGL+S+  +AF KN +L++IN + N+LT 
Sbjct: 20   ERHIENWRGLHTLNAVDMELYTGLQKLTIKNSGLRSIQPRAFAKNPHLRYINLSSNRLTT 79

Query: 1030 LSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQET-KPSLETQDLYCLDENSKNISLAN 1206
            LS + F+ L L EL L  N F CSCDI W++  QE  +  L  Q LYC++ +   + L  
Sbjct: 80   LSWQLFQTLSLRELRLEQNFFNCSCDIRWMQLWQEQGEAKLNNQHLYCINADGSQLPLFR 139

Query: 1207 LQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVS-----KHMNET 1371
            + I  C LP  +++  NLTV EG +  ++C+ +G P+P++ W V  L S      ++N T
Sbjct: 140  MNISQCDLPEISVSHVNLTVREGDNAVITCNGSGSPLPDVDWIVTGLQSINTHQTNLNWT 199

Query: 1372 SYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHHWCI 1551
            +    +L + N++S+D+G  ++C+AEN+VG    SV LTVH+ P +  LE P      CI
Sbjct: 200  NVHAINLTLVNVTSEDNGFTLTCIAENVVGMSNASVALTVHYPPRVVSLEEPELRLEHCI 259

Query: 1552 PFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH-------GCLQLDNPTHMNN 1710
             F V+GNP P L W +NG  L ESK          H EY+       GCL  + PTH NN
Sbjct: 260  EFVVRGNPPPTLHWLHNGQPLRESK--------ITHVEYYQEGEVSEGCLLFNKPTHYNN 311

Query: 1711 GDYKLVAKNEYGKDEKQISAHFMGWP 1788
            G+Y L+AKN  G   + I+ HF+  P
Sbjct: 312  GNYTLIAKNPLGTANQTINGHFLKEP 337


>ref|XP_851619.1| PREDICTED: similar to neurotrophic tyrosine kinase, receptor, type 1
            isoform 2 isoform 3 [Canis familiaris].
          Length = 796

 Score =  197 bits (501), Expect = 4e-50
 Identities = 134/381 (35%), Positives = 192/381 (50%), Gaps = 6/381 (1%)
 Frame = +1

Query: 664  HGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEPSTADPEN 843
            HG A        WL++    AA      C    S + C+     + +  RL       EN
Sbjct: 13   HGRAAGPGSLLAWLVLASAGAAPCPDVCCPHGPSGLRCTRAG-ALQSLHRLP----GVEN 67

Query: 844  ITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHINFTRNKL 1023
            +TE+YI NQ+ L+ ++             TIV SGL+SVA  AF     L+ +N + N L
Sbjct: 68   LTELYIDNQEHLQHLDLPS----------TIVKSGLRSVAPDAFHFTPRLRRLNLSFNAL 117

Query: 1024 TILSRKHFRHLDLSELILVGNPFRCSCDIMWI-KTLQETKPSLETQDLYCLDENSKNISL 1200
              LS K  + L L EL+L GNP  CSC + W+ +  +E    +  Q L C  +      L
Sbjct: 118  ESLSWKTVQGLPLQELVLSGNPLHCSCALHWLLRWEEEGLGGVRGQRLQCPGQGP----L 173

Query: 1201 ANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW---DVGNLVSKHMNET 1371
            A L   +CG+P   +  PN +VE G  + L C V G  +    W   +V  L +   +  
Sbjct: 174  ALLSNASCGVPVLKVQMPNASVEVGDDVLLQCQVEGRGLERAGWILPEVEELATVTPSGD 233

Query: 1372 SYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHHWCI 1551
              + G L + N++SD + K ++C AEN VG  + SV + V F P    L      HHWCI
Sbjct: 234  LPSLG-LILANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF-PASVQLHEAVELHHWCI 291

Query: 1552 PFTVKGNPKPALQWFYNGAILNESKYICTKI--HVTNHTEYHGCLQLDNPTHMNNGDYKL 1725
            PF+V G P P+L+W +NG++LNE+ +I T+    V N T  HGCL+L+ PTH+NNG+Y L
Sbjct: 292  PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPVANETVRHGCLRLNQPTHVNNGNYTL 351

Query: 1726 VAKNEYGKDEKQISAHFMGWP 1788
            +A N  G+    + A FM  P
Sbjct: 352  LAANPSGRAAAFVMAAFMDNP 372


>ref|XP_547525.2| PREDICTED: similar to neurotrophic tyrosine kinase, receptor, type 1
            isoform 2 isoform 1 [Canis familiaris].
          Length = 790

 Score =  197 bits (501), Expect = 4e-50
 Identities = 134/381 (35%), Positives = 192/381 (50%), Gaps = 6/381 (1%)
 Frame = +1

Query: 664  HGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEPSTADPEN 843
            HG A        WL++    AA      C    S + C+     + +  RL       EN
Sbjct: 13   HGRAAGPGSLLAWLVLASAGAAPCPDVCCPHGPSGLRCTRAG-ALQSLHRLP----GVEN 67

Query: 844  ITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHINFTRNKL 1023
            +TE+YI NQ+ L+ ++             TIV SGL+SVA  AF     L+ +N + N L
Sbjct: 68   LTELYIDNQEHLQHLDLPS----------TIVKSGLRSVAPDAFHFTPRLRRLNLSFNAL 117

Query: 1024 TILSRKHFRHLDLSELILVGNPFRCSCDIMWI-KTLQETKPSLETQDLYCLDENSKNISL 1200
              LS K  + L L EL+L GNP  CSC + W+ +  +E    +  Q L C  +      L
Sbjct: 118  ESLSWKTVQGLPLQELVLSGNPLHCSCALHWLLRWEEEGLGGVRGQRLQCPGQGP----L 173

Query: 1201 ANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW---DVGNLVSKHMNET 1371
            A L   +CG+P   +  PN +VE G  + L C V G  +    W   +V  L +   +  
Sbjct: 174  ALLSNASCGVPVLKVQMPNASVEVGDDVLLQCQVEGRGLERAGWILPEVEELATVTPSGD 233

Query: 1372 SYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHHWCI 1551
              + G L + N++SD + K ++C AEN VG  + SV + V F P    L      HHWCI
Sbjct: 234  LPSLG-LILANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF-PASVQLHEAVELHHWCI 291

Query: 1552 PFTVKGNPKPALQWFYNGAILNESKYICTKI--HVTNHTEYHGCLQLDNPTHMNNGDYKL 1725
            PF+V G P P+L+W +NG++LNE+ +I T+    V N T  HGCL+L+ PTH+NNG+Y L
Sbjct: 292  PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPVANETVRHGCLRLNQPTHVNNGNYTL 351

Query: 1726 VAKNEYGKDEKQISAHFMGWP 1788
            +A N  G+    + A FM  P
Sbjct: 352  LAANPSGRAAAFVMAAFMDNP 372


>ref|NP_001010950.1| neural cell adhesion molecule 1 [Canis lupus familiaris].
          Length = 725

 Score = 77.4 bits (189), Expect = 6e-14
 Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 17/227 (7%)
 Frame = +1

Query: 1168 CLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW--DVG 1341
            C+ EN      A++ +     P          +E  + +TL+C  +GDP+P + W     
Sbjct: 286  CIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLTCEASGDPIPTITWRTSTR 345

Query: 1342 NLVSK------HMNETSYTQ-GSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFA 1500
            N+ S+      H+   S+ +  SL + +I   D+G+ I C A N +G+D  S+ L V +A
Sbjct: 346  NISSEEKTLDGHIVVRSHARVSSLTLKSIQYTDAGEYI-CTASNTIGQDSQSMYLEVQYA 404

Query: 1501 PTITFLESPTSDHHW-----CIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 1665
            P    L+ P + + W      I   V   P   + WF +G +L  S Y   KI+ T    
Sbjct: 405  PK---LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 461

Query: 1666 YHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQ---ISAHFMGWPGID 1797
            Y   L++   +  + G+Y   A N  G++  +   + A     P ID
Sbjct: 462  Y---LEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID 505



 Score = 69.3 bits (168), Expect = 2e-11
 Identities = 74/340 (21%), Positives = 137/340 (40%), Gaps = 40/340 (11%)
 Frame = +1

Query: 865  NQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHINFTRNKLTILSRKH 1044
            NQ+R+ ++  DD  +   + N  I D+G+    +K  +   +      T N + I  +  
Sbjct: 65   NQQRISVVWNDDSSSTLTIYNANIDDAGI----YKCVVTGEDGSESEATVN-VKIFQKLM 119

Query: 1045 FRHLDLSELILVGNPFRCSCD--------IMW------------IKTLQETKPSLETQDL 1164
            F++    +    G      CD        I+W            ++ +  +   L+ +D+
Sbjct: 120  FKNAPTPQEFREGEDAVIVCDVVSSLPPTIIWKHKGRDVILTKDVRFIVLSNNYLQIRDI 179

Query: 1165 YCLDENSKN----------ISLANLQIPNCGLPS--ANLAAPNLTVEEGKSITLSCSVAG 1308
               DE +            I+  ++Q+     P+  A  +  N T   G+S+TL C   G
Sbjct: 180  KKTDEGTYRCEGRILARGEINFKDIQVTVNVPPTVQARQSIVNATANLGQSVTLVCDAKG 239

Query: 1309 DPVPNLYWDVGNLVSKHMNETSY----TQGSLRITNISSDDSGKQISCVAENLVGEDQDS 1476
             P P + W       ++  +  Y        L I  +  +D  + + C+AEN  GE   S
Sbjct: 240  FPEPTMSWTKEGEQIENKEDEKYIFSDDSSELTIRKVDKNDEAEYV-CIAENKAGEQDAS 298

Query: 1477 VNLTVHFAPTITFLESPTS---DHHWCIPFTVKGNPKPALQWFYNGA-ILNESKYICTKI 1644
            ++L V   P IT++E+ T+   +    +     G+P P + W  +   I +E K +   I
Sbjct: 299  IHLKVFAKPKITYVENQTAMELEEQVTLTCEASGDPIPTITWRTSTRNISSEEKTLDGHI 358

Query: 1645 HVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQI 1764
             V +H      L L +  + + G+Y   A N  G+D + +
Sbjct: 359  VVRSHARV-SSLTLKSIQYTDAGEYICTASNTIGQDSQSM 397


>ref|XP_545681.1| PREDICTED: similar to leucine rich repeat neuronal 5 precursor [Canis
            familiaris].
          Length = 712

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 13/255 (5%)
 Frame = +1

Query: 841  NITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAH-KAFLKNSNLQHINFTRN 1017
            ++ E+ + N + L  I++  +     L  L I ++   S  H +AF     ++ +    N
Sbjct: 286  HLKELGLNNMEELVSIDKFALVNLPELTKLDITNNPRLSFIHPRAFHHLPQMETLMLNNN 345

Query: 1018 KLTILSRKHFRHL-DLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDENS--- 1185
             L+ L ++    L +L E+ L GNP RC C I W          +E Q   C++      
Sbjct: 346  ALSALHQQTVESLPNLQEVGLHGNPIRCDCVIRWANATGTRVRFIEPQSTLCVEPPDLQR 405

Query: 1186 ---KNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSK 1356
               + +    +      L S     P+L V  G S+ L C    +P P +YW     V  
Sbjct: 406  RPVREVPFREMTDHCLPLISPRSFPPSLQVASGDSLALHCRALAEPEPEIYWVTPAGVRL 465

Query: 1357 HMNETS-----YTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLE 1521
                       Y +G+L +  ++++++G   +CVA+NLVG D  +V++ V  AP      
Sbjct: 466  TAARAGRKYRVYPEGTLELRRVTAEEAG-LYTCVAQNLVGADSKTVSVAVGQAPL----- 519

Query: 1522 SPTSDHHWCIPFTVK 1566
             P  D  W +   V+
Sbjct: 520  QPGRDKGWGLELRVQ 534


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 94,436,865
Number of extensions: 2438693
Number of successful extensions: 9744
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 9369
Number of HSP's successfully gapped: 119
Length of query: 832
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 721
Effective length of database: 15,174,208
Effective search space: 10940603968
Effective search space used: 10940603968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012420
         (2497 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001068693.1| BDNF/NT-3 growth factors receptor [Bos tauru...   904   0.0  
Alignment   gi|NP_001193412.1| NT-3 growth factor receptor [Bos taurus].         268   2e-71
Alignment   gi|XP_002686012.1| PREDICTED: neurotrophic tyrosine kinase, rec...   218   2e-56
Alignment   gi|XP_002686011.1| PREDICTED: neurotrophic tyrosine kinase, rec...   218   2e-56
Alignment   gi|XP_613650.3| PREDICTED: neurotrophic tyrosine kinase, recept...   218   2e-56
Alignment   gi|XP_887488.2| PREDICTED: neurotrophic tyrosine kinase, recept...   218   2e-56
Alignment   gi|XP_002686856.1| PREDICTED: leucine-rich repeat neuronal prot...    75   2e-13
Alignment   gi|XP_588627.2| PREDICTED: leucine-rich repeat neuronal protein...    75   2e-13
Alignment   gi|NP_776824.1| neural cell adhesion molecule 1 precursor [Bos ...    75   3e-13
Alignment   gi|NP_001179466.1| hemicentin-1 [Bos taurus].                         72   2e-12

>ref|NP_001068693.1| BDNF/NT-3 growth factors receptor [Bos taurus].
          Length = 476

 Score =  904 bits (2336), Expect = 0.0
 Identities = 433/476 (90%), Positives = 442/476 (92%)
 Frame = +1

Query: 643  MSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 822
            MSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWC DPSPGIVAFP+LE 
Sbjct: 1    MSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCGDPSPGIVAFPKLEA 60

Query: 823  STADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHI 1002
            ++ADPENITEIYIANQKRLEIINEDD+EAY GLKNLTIVDSGLKSVAHKAFLKNSNLQHI
Sbjct: 61   TSADPENITEIYIANQKRLEIINEDDLEAYVGLKNLTIVDSGLKSVAHKAFLKNSNLQHI 120

Query: 1003 NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN 1182
            NFTRNKLTILSRKHFRHLDLSELILVGNPF CSCD+MWIKTLQETKPS ETQDLYCLDEN
Sbjct: 121  NFTRNKLTILSRKHFRHLDLSELILVGNPFTCSCDVMWIKTLQETKPSPETQDLYCLDEN 180

Query: 1183 SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 1362
            SKNISLANLQIP+CGLPSANLAAPNLTVEEGKSITLSC+VAGDPVPNLYWDVGNLVSKHM
Sbjct: 181  SKNISLANLQIPHCGLPSANLAAPNLTVEEGKSITLSCTVAGDPVPNLYWDVGNLVSKHM 240

Query: 1363 NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 1542
            NETS+TQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH
Sbjct: 241  NETSHTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 300

Query: 1543 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 1722
            WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK
Sbjct: 301  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 360

Query: 1723 LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 1902
            LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTN+SN    T
Sbjct: 361  LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNKSNGTLPT 420

Query: 1903 DVADKTGREHLXXXXXXXXXXXXGFCXXXXXXXXXXARHSKFGMKGFVLFHKIPLD 2070
             V D TGREHL            GFC          ARHSKFGMKGFVLFHKIPLD
Sbjct: 421  GVVD-TGREHLSVYAVVVIASVVGFCLLVMLFLLKLARHSKFGMKGFVLFHKIPLD 475


>ref|NP_001193412.1| NT-3 growth factor receptor [Bos taurus].
          Length = 817

 Score =  268 bits (684), Expect = 2e-71
 Identities = 155/404 (38%), Positives = 221/404 (54%), Gaps = 31/404 (7%)
 Frame = +1

Query: 670  PAMARLW-----GFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEPS--- 825
            PA    W     G  WL   +  + LACP +C CS + I C  P  G + FP LE     
Sbjct: 7    PAKCSFWRIFLLGSVWL--DYVGSVLACPANCVCSKTEINCRRPDDGNL-FPLLEGQDSG 63

Query: 826  ----------TADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAF 975
                      T    NIT I+I N + L  +N  D+E Y GL+ LTI +SGL+++  +AF
Sbjct: 64   NSNGNASINITDISRNITSIHIENWRGLHTLNAVDMELYTGLQKLTIKNSGLRNIQPRAF 123

Query: 976  LKNSNLQHINFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQET-KPSLE 1152
             KN +L++IN + N+LT LS + F+ L L EL L  N F CSCDI W++  QE  +  L 
Sbjct: 124  AKNPHLRYINLSSNRLTTLSWQLFQTLSLRELRLEQNFFNCSCDIRWMQLWQEQGEAKLN 183

Query: 1153 TQDLYCLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW 1332
            +Q+LYC+  +   + L  + I  C LP  +++  NLTV EG +  ++C+ +G P+P++ W
Sbjct: 184  SQNLYCISADGSQLPLFRMNISQCDLPEISVSHANLTVREGDNAVITCNGSGSPLPDVDW 243

Query: 1333 DVGNLVS-----KHMNETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHF 1497
             V  L S      ++N T+    +L + N++S+D+G  ++C+AEN+VG    SV LTVH+
Sbjct: 244  IVTGLQSINTHQTNLNWTNVHAINLTLVNVTSEDNGFTLTCIAENVVGMSNASVALTVHY 303

Query: 1498 APTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH-- 1671
             P +  LE P      CI F V+GNP P L W +NG  L ESK I        H EY+  
Sbjct: 304  PPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKII--------HVEYYQE 355

Query: 1672 -----GCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWP 1788
                 GCL  + PTH NNG+Y L+AKN  G   + I+ HF+  P
Sbjct: 356  GEVSEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP 399


>ref|XP_002686012.1| PREDICTED: neurotrophic tyrosine kinase, receptor, type 1 isoform 2
            [Bos taurus].
          Length = 821

 Score =  218 bits (555), Expect = 2e-56
 Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 7/370 (1%)
 Frame = +1

Query: 700  WLIVGFWRAALACPTSCKCSASRIWCSDPSP--GIVAFPRLEPSTADPENITEIYIANQK 873
            WL++    AA      C    S + C+ P     ++  P         EN+TE+YI NQ+
Sbjct: 51   WLMLASAGAASCPDVCCPHGPSGLRCTRPGALDNLLHLP-------GAENLTELYIENQQ 103

Query: 874  RLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHINFTRNKLTILSRKHFRH 1053
             L+ +   D+     L+ LTIV SGL+SVA  AF     L  +N + N L  LS K  + 
Sbjct: 104  HLQQLKRSDLRGLGELRKLTIVKSGLRSVAPNAFHYTPRLGRLNLSFNALESLSWKTVQG 163

Query: 1054 LDLSELILVGNPFRCSCDIMWIKTLQET-KPSLETQDLYCLDENSKNISLANLQIPNCGL 1230
            L L EL+L GNP  CSC ++W++  +E  +  +  Q L C  +      LA +   +CG 
Sbjct: 164  LSLQELVLSGNPLHCSCALLWLQRWEEEGRGGVREQKLQCPGQG----PLALMSNASCGE 219

Query: 1231 PSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKH--MNETSYTQGSLRITN 1404
            P+  +   N +V+ G  + L C V G  +    W +  L      M   S     L + N
Sbjct: 220  PTLKIQMSNASVDVGADVLLQCQVEGQGLEQAGWILTELEGSATVMESGSLPSLGLTLAN 279

Query: 1405 ISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHHWCIPFTVKGNPKPA 1584
            ++SD + K ++C AEN VG  + S  + V F P    L++    HHWCIPF+V G P P+
Sbjct: 280  VTSDLNRKNVTCWAENDVGRAEVSAQVNVSF-PASVHLQAAVEQHHWCIPFSVDGQPAPS 338

Query: 1585 LQWFYNGAILNESKYICTKI--HVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEK 1758
            L+W +NG++LNE+ +I T+      N T  HGCL+L+ PTH+NNG+Y L+A N  G+   
Sbjct: 339  LRWLFNGSVLNETSFIFTEFLDLAANETMRHGCLRLNQPTHVNNGNYTLLATNPLGQAAA 398

Query: 1759 QISAHFMGWP 1788
             + A FM  P
Sbjct: 399  WVMAAFMDNP 408


>ref|XP_002686011.1| PREDICTED: neurotrophic tyrosine kinase, receptor, type 1 isoform 1
            [Bos taurus].
          Length = 815

 Score =  218 bits (555), Expect = 2e-56
 Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 7/370 (1%)
 Frame = +1

Query: 700  WLIVGFWRAALACPTSCKCSASRIWCSDPSP--GIVAFPRLEPSTADPENITEIYIANQK 873
            WL++    AA      C    S + C+ P     ++  P         EN+TE+YI NQ+
Sbjct: 51   WLMLASAGAASCPDVCCPHGPSGLRCTRPGALDNLLHLP-------GAENLTELYIENQQ 103

Query: 874  RLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHINFTRNKLTILSRKHFRH 1053
             L+ +   D+     L+ LTIV SGL+SVA  AF     L  +N + N L  LS K  + 
Sbjct: 104  HLQQLKRSDLRGLGELRKLTIVKSGLRSVAPNAFHYTPRLGRLNLSFNALESLSWKTVQG 163

Query: 1054 LDLSELILVGNPFRCSCDIMWIKTLQET-KPSLETQDLYCLDENSKNISLANLQIPNCGL 1230
            L L EL+L GNP  CSC ++W++  +E  +  +  Q L C  +      LA +   +CG 
Sbjct: 164  LSLQELVLSGNPLHCSCALLWLQRWEEEGRGGVREQKLQCPGQG----PLALMSNASCGE 219

Query: 1231 PSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKH--MNETSYTQGSLRITN 1404
            P+  +   N +V+ G  + L C V G  +    W +  L      M   S     L + N
Sbjct: 220  PTLKIQMSNASVDVGADVLLQCQVEGQGLEQAGWILTELEGSATVMESGSLPSLGLTLAN 279

Query: 1405 ISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHHWCIPFTVKGNPKPA 1584
            ++SD + K ++C AEN VG  + S  + V F P    L++    HHWCIPF+V G P P+
Sbjct: 280  VTSDLNRKNVTCWAENDVGRAEVSAQVNVSF-PASVHLQAAVEQHHWCIPFSVDGQPAPS 338

Query: 1585 LQWFYNGAILNESKYICTKI--HVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEK 1758
            L+W +NG++LNE+ +I T+      N T  HGCL+L+ PTH+NNG+Y L+A N  G+   
Sbjct: 339  LRWLFNGSVLNETSFIFTEFLDLAANETMRHGCLRLNQPTHVNNGNYTLLATNPLGQAAA 398

Query: 1759 QISAHFMGWP 1788
             + A FM  P
Sbjct: 399  WVMAAFMDNP 408


>ref|XP_613650.3| PREDICTED: neurotrophic tyrosine kinase, receptor, type 1 isoform 1
            [Bos taurus].
          Length = 821

 Score =  218 bits (555), Expect = 2e-56
 Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 7/370 (1%)
 Frame = +1

Query: 700  WLIVGFWRAALACPTSCKCSASRIWCSDPSP--GIVAFPRLEPSTADPENITEIYIANQK 873
            WL++    AA      C    S + C+ P     ++  P         EN+TE+YI NQ+
Sbjct: 51   WLMLASAGAASCPDVCCPHGPSGLRCTRPGALDNLLHLP-------GAENLTELYIENQQ 103

Query: 874  RLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHINFTRNKLTILSRKHFRH 1053
             L+ +   D+     L+ LTIV SGL+SVA  AF     L  +N + N L  LS K  + 
Sbjct: 104  HLQQLKRSDLRGLGELRKLTIVKSGLRSVAPNAFHYTPRLGRLNLSFNALESLSWKTVQG 163

Query: 1054 LDLSELILVGNPFRCSCDIMWIKTLQET-KPSLETQDLYCLDENSKNISLANLQIPNCGL 1230
            L L EL+L GNP  CSC ++W++  +E  +  +  Q L C  +      LA +   +CG 
Sbjct: 164  LSLQELVLSGNPLHCSCALLWLQRWEEEGRGGVREQKLQCPGQG----PLALMSNASCGE 219

Query: 1231 PSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKH--MNETSYTQGSLRITN 1404
            P+  +   N +V+ G  + L C V G  +    W +  L      M   S     L + N
Sbjct: 220  PTLKIQMSNASVDVGADVLLQCQVEGQGLEQAGWILTELEGSATVMESGSLPSLGLTLAN 279

Query: 1405 ISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHHWCIPFTVKGNPKPA 1584
            ++SD + K ++C AEN VG  + S  + V F P    L++    HHWCIPF+V G P P+
Sbjct: 280  VTSDLNRKNVTCWAENDVGRAEVSAQVNVSF-PASVHLQAAVEQHHWCIPFSVDGQPAPS 338

Query: 1585 LQWFYNGAILNESKYICTKI--HVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEK 1758
            L+W +NG++LNE+ +I T+      N T  HGCL+L+ PTH+NNG+Y L+A N  G+   
Sbjct: 339  LRWLFNGSVLNETSFIFTEFLDLAANETMRHGCLRLNQPTHVNNGNYTLLATNPLGQAAA 398

Query: 1759 QISAHFMGWP 1788
             + A FM  P
Sbjct: 399  WVMAAFMDNP 408


>ref|XP_887488.2| PREDICTED: neurotrophic tyrosine kinase, receptor, type 1 isoform 3
            [Bos taurus].
          Length = 815

 Score =  218 bits (555), Expect = 2e-56
 Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 7/370 (1%)
 Frame = +1

Query: 700  WLIVGFWRAALACPTSCKCSASRIWCSDPSP--GIVAFPRLEPSTADPENITEIYIANQK 873
            WL++    AA      C    S + C+ P     ++  P         EN+TE+YI NQ+
Sbjct: 51   WLMLASAGAASCPDVCCPHGPSGLRCTRPGALDNLLHLP-------GAENLTELYIENQQ 103

Query: 874  RLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHINFTRNKLTILSRKHFRH 1053
             L+ +   D+     L+ LTIV SGL+SVA  AF     L  +N + N L  LS K  + 
Sbjct: 104  HLQQLKRSDLRGLGELRKLTIVKSGLRSVAPNAFHYTPRLGRLNLSFNALESLSWKTVQG 163

Query: 1054 LDLSELILVGNPFRCSCDIMWIKTLQET-KPSLETQDLYCLDENSKNISLANLQIPNCGL 1230
            L L EL+L GNP  CSC ++W++  +E  +  +  Q L C  +      LA +   +CG 
Sbjct: 164  LSLQELVLSGNPLHCSCALLWLQRWEEEGRGGVREQKLQCPGQG----PLALMSNASCGE 219

Query: 1231 PSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKH--MNETSYTQGSLRITN 1404
            P+  +   N +V+ G  + L C V G  +    W +  L      M   S     L + N
Sbjct: 220  PTLKIQMSNASVDVGADVLLQCQVEGQGLEQAGWILTELEGSATVMESGSLPSLGLTLAN 279

Query: 1405 ISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHHWCIPFTVKGNPKPA 1584
            ++SD + K ++C AEN VG  + S  + V F P    L++    HHWCIPF+V G P P+
Sbjct: 280  VTSDLNRKNVTCWAENDVGRAEVSAQVNVSF-PASVHLQAAVEQHHWCIPFSVDGQPAPS 338

Query: 1585 LQWFYNGAILNESKYICTKI--HVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEK 1758
            L+W +NG++LNE+ +I T+      N T  HGCL+L+ PTH+NNG+Y L+A N  G+   
Sbjct: 339  LRWLFNGSVLNETSFIFTEFLDLAANETMRHGCLRLNQPTHVNNGNYTLLATNPLGQAAA 398

Query: 1759 QISAHFMGWP 1788
             + A FM  P
Sbjct: 399  WVMAAFMDNP 408


>ref|XP_002686856.1| PREDICTED: leucine-rich repeat neuronal protein 3-like [Bos taurus].
          Length = 708

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 13/230 (5%)
 Frame = +1

Query: 841  NITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAH-KAFLKNSNLQHINFTRN 1017
            ++ E+ I N   L  I+   V+    L+ +   ++   S  H  AF +   L+ +    N
Sbjct: 285  HLKELGINNMPELISIDSLAVDNLPDLRKIEATNNPRLSYIHPNAFFRLPKLESLMLNSN 344

Query: 1018 KLTILSRKHFRHL-DLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLD------ 1176
             L+ L +     L +L E+ +  NP RC C I WI   +     +E + L+C+D      
Sbjct: 345  ALSALYQGTVESLPNLKEISIHSNPIRCDCVIRWINMNKTNIRFMEPESLFCVDPPEFQG 404

Query: 1177 ENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGN---L 1347
            +N + +    +      L +      NL +E G  ++L C    +P P +YW   +   L
Sbjct: 405  QNVRQVHFREMMEICLPLIAPESFPSNLDLEAGSYVSLHCRATAEPQPEIYWITPSGKKL 464

Query: 1348 VSKHMNETSY--TQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTV 1491
            +   +    Y  ++G+L I+ I+  + G   +C+A NLVG D  SV + V
Sbjct: 465  LPNTLTNKFYVHSEGTLDISGITPAEGG-LYTCIATNLVGADLKSVMIKV 513


>ref|XP_588627.2| PREDICTED: leucine-rich repeat neuronal protein 3-like [Bos taurus].
          Length = 708

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 13/230 (5%)
 Frame = +1

Query: 841  NITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAH-KAFLKNSNLQHINFTRN 1017
            ++ E+ I N   L  I+   V+    L+ +   ++   S  H  AF +   L+ +    N
Sbjct: 285  HLKELGINNMPELISIDSLAVDNLPDLRKIEATNNPRLSYIHPNAFFRLPKLESLMLNSN 344

Query: 1018 KLTILSRKHFRHL-DLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLD------ 1176
             L+ L +     L +L E+ +  NP RC C I WI   +     +E + L+C+D      
Sbjct: 345  ALSALYQGTVESLPNLKEISIHSNPIRCDCVIRWINMNKTNIRFMEPESLFCVDPPEFQG 404

Query: 1177 ENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGN---L 1347
            +N + +    +      L +      NL +E G  ++L C    +P P +YW   +   L
Sbjct: 405  QNVRQVHFREMMEICLPLIAPESFPSNLDLEAGSYVSLHCRATAEPQPEIYWITPSGKKL 464

Query: 1348 VSKHMNETSY--TQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTV 1491
            +   +    Y  ++G+L I+ I+  + G   +C+A NLVG D  SV + V
Sbjct: 465  LPNTLTNKFYVHSEGTLDISGITPAEGG-LYTCIATNLVGADLKSVMIKV 513


>ref|NP_776824.1| neural cell adhesion molecule 1 precursor [Bos taurus].
          Length = 853

 Score = 75.1 bits (183), Expect = 3e-13
 Identities = 57/237 (24%), Positives = 97/237 (40%), Gaps = 27/237 (11%)
 Frame = +1

Query: 1168 CLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNL 1347
            C+ EN      A++ +     P          +E  + +TL+C  +GDP+P++ W     
Sbjct: 286  CIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLTCEASGDPIPSITWRTSTR 345

Query: 1348 VSKHMNETSYTQ-------------------GSLRITNISSDDSGKQISCVAENLVGEDQ 1470
                  + S+T+                    SL + +I   D+G+ + C A N +G+D 
Sbjct: 346  NISSEEKASWTRPEKQETLDGHMVVRSHARVSSLTLKSIQYTDAGEYV-CTASNTIGQDS 404

Query: 1471 DSVNLTVHFAPTITFLESPTSDHHW-----CIPFTVKGNPKPALQWFYNGAILNESKYIC 1635
             S+ L V +AP    L+ P + + W      I   V   P   + WF +G +L  S Y  
Sbjct: 405  QSMYLEVQYAPK---LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSN 461

Query: 1636 TKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQ---ISAHFMGWPGID 1797
             KI+ T    Y   L++   +  + G+Y   A N  G++  +   + A     P ID
Sbjct: 462  IKIYNTPSASY---LEVTPDSENDFGNYNCTAVNRIGQESLEFVLVQADTPSSPSID 515



 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 17/187 (9%)
 Frame = +1

Query: 1255 NLTVEEGKSITLSCSVAGDPVPNLYWDV-GNLVSKHMNET---SYTQGSLRITNISSDDS 1422
            N T   G+S+TL C+  G P P + W   G  +    +E    S     L I  +  +D 
Sbjct: 222  NATANLGQSVTLVCNAEGFPEPTVSWTKDGEQIENEEDEKYLFSDDSSELTIRKVDKNDE 281

Query: 1423 GKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTS---DHHWCIPFTVKGNPKPALQW 1593
             + + C+AEN  GE   S++L V   P IT++E+ T+   +    +     G+P P++ W
Sbjct: 282  AEYV-CIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLTCEASGDPIPSITW 340

Query: 1594 FYNGA-ILNESKYICTKIHVTNHTEYH---------GCLQLDNPTHMNNGDYKLVAKNEY 1743
              +   I +E K   T+       + H           L L +  + + G+Y   A N  
Sbjct: 341  RTSTRNISSEEKASWTRPEKQETLDGHMVVRSHARVSSLTLKSIQYTDAGEYVCTASNTI 400

Query: 1744 GKDEKQI 1764
            G+D + +
Sbjct: 401  GQDSQSM 407


>ref|NP_001179466.1| hemicentin-1 [Bos taurus].
          Length = 5635

 Score = 72.0 bits (175), Expect = 2e-12
 Identities = 71/259 (27%), Positives = 115/259 (44%), Gaps = 13/259 (5%)
 Frame = +1

Query: 1066 ELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDENSKNISLANLQIPNCGLPSANL 1245
            +L L  + F  +  ++ +  +QET+  L+  D  C+  N    +   + + + G P   +
Sbjct: 739  DLELKPSTFLITDPLLGLLKIQETQ-DLDAGDYTCVAVNDAGRATGRITL-DVGSPPVFI 796

Query: 1246 AAP-NLTVEEGKSITLSCSVAGDPVPNLYW---DVGNLVSKHMNETSYTQ---GSLRITN 1404
              P +++VE G ++TL C V G P P + W   D   + S+  + +S +Q   G L I+N
Sbjct: 797  QEPTDVSVEIGSNVTLPCYVQGYPEPKIKWRRVDNMPIFSRPFSVSSISQLRTGDLFISN 856

Query: 1405 ISSDDSGKQISCVAENLVG--EDQDSVNLTVHFAPTITFLESPTS---DHHWCIPFT-VK 1566
            + + D G  I C AEN  G  + Q +V +T   AP I      TS        +P   + 
Sbjct: 857  LWASDKGTYI-CEAENQFGKIQSQTTVTVTGLVAPLIGISPPVTSVIEGQQLTLPCALLA 915

Query: 1567 GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYG 1746
            GNP P  +W  N A+L ++ YI  +          G L ++     + G+Y  VA N  G
Sbjct: 916  GNPIPERRWIKNSAMLVQNPYITVR--------SDGSLHIERVRLQDGGEYTCVASNVAG 967

Query: 1747 KDEKQISAHFMGWPGIDDG 1803
               K  +      P I  G
Sbjct: 968  ITNKTTTVDVHVLPTIQHG 986



 Score = 69.3 bits (168), Expect = 2e-11
 Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 5/186 (2%)
 Frame = +1

Query: 1258 LTVEEGKSITLSCSVAGDPVPNLYW-DVGNLVSKHM-NETSYTQGSLRITNISSDDSGKQ 1431
            ++V  G+ +TL C V G P P + W     L+S      T    GS++IT     DSG  
Sbjct: 1089 ISVFAGEEVTLPCEVKGLPPPIITWAKETQLISPFSPRHTFLPSGSMKITETRVSDSGMY 1148

Query: 1432 ISCVAENLVGEDQDSVNLTVHFAPTI---TFLESPTSDHHWCIPFTVKGNPKPALQWFYN 1602
            + CVA N+ G    SV L VH  P I     +          IP + +G P P + WF  
Sbjct: 1149 L-CVATNIAGNVTQSVKLNVHVPPKIQRGPKVMKVQVGQRVDIPCSAQGTPLPVITWFKG 1207

Query: 1603 GAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMG 1782
            G  +     +   +    H +  G L +      + G Y  VA N  G DE +I+ H   
Sbjct: 1208 GGAV-----LVDGLQHIRHPD--GTLSIKQAVLSDAGIYTCVATNIAGSDETEITLHVQE 1260

Query: 1783 WPGIDD 1800
             P ++D
Sbjct: 1261 PPILED 1266



 Score = 68.6 bits (166), Expect = 3e-11
 Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 10/209 (4%)
 Frame = +1

Query: 1204 NLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGN--LVSKHMNETSY 1377
            N+ +P    P        + V+ G+ + + CS  G P+P + W  G   ++   +    +
Sbjct: 1166 NVHVP----PKIQRGPKVMKVQVGQRVDIPCSAQGTPLPVITWFKGGGAVLVDGLQHIRH 1221

Query: 1378 TQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESP--------TS 1533
              G+L I      D+G   +CVA N+ G D+  + L V   P +  LE P         +
Sbjct: 1222 PDGTLSIKQAVLSDAGIY-TCVATNIAGSDETEITLHVQEPPILEDLEPPYNTPFQERVA 1280

Query: 1534 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG 1713
            +     P   KG PKP ++W  NG  L   +   + +      E    L + + T  +NG
Sbjct: 1281 NQRIAFPCPAKGTPKPTIKWLRNGRELTGQEPGISIL------EDGTLLVIASVTPYDNG 1334

Query: 1714 DYKLVAKNEYGKDEKQISAHFMGWPGIDD 1800
            +Y  VA NE G  E++ +      P I D
Sbjct: 1335 EYICVAVNEAGTTERRYNLKVHVPPVIKD 1363



 Score = 67.8 bits (164), Expect = 4e-11
 Identities = 62/212 (29%), Positives = 91/212 (42%), Gaps = 12/212 (5%)
 Frame = +1

Query: 1231 PSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDV-GNLVSKHMNETSY---TQGSLRI 1398
            PS      N++V      TL+C   G P P++ W   G+L++   N+ SY   + GSL I
Sbjct: 3804 PSIAPGPTNISVTVNVQTTLACEATGIPKPSVNWRKNGHLLNVDQNQNSYRLLSSGSLVI 3863

Query: 1399 TNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESP-----TSDHHWCIPFTV 1563
             + S DD+     C   N  GED+ +V+LTV   P+I   + P     T      I  T 
Sbjct: 3864 ISPSVDDTATY-ECTVTNDAGEDKRAVDLTVQVPPSIA--DEPTDFLVTKHTPTVITCTA 3920

Query: 1564 KGNPKPALQWFYNGAIL---NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAK 1734
             G P P++ W  NG  L    E   I +           G +++ +    + G Y  VA+
Sbjct: 3921 SGVPFPSIHWMKNGVRLLPRGEGYRILSS----------GAIEILDTQLSHAGRYTCVAR 3970

Query: 1735 NEYGKDEKQISAHFMGWPGIDDGANPNYPDVI 1830
            N  G   + +S H    P I     P+  DVI
Sbjct: 3971 NSAGSAHRHVSLHVQEPPVIQ--PQPSELDVI 4000



 Score = 67.8 bits (164), Expect = 4e-11
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 8/208 (3%)
 Frame = +1

Query: 1168 CLDENSKNISLANLQIPNCGLPSANLAAPN--LTVEEGKSITLSCSVAGDPVPNLYWDV- 1338
            C+ +N    +L  +++ N  +P      P   +TV + K I L C   G P P++ W   
Sbjct: 4058 CVAQNPAGTALGKIKL-NVQVPPVISPHPKEYITVVD-KPIMLPCKADGLPPPDIMWHKD 4115

Query: 1339 GNLVSKHMNETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFL 1518
            G+++ + + +   + G+L+I      D+G Q +C+A N+ G    S  LTVH  P I   
Sbjct: 4116 GHVIVESVRQRILSSGALQIAFAQPGDAG-QYTCMAANVAGSSSTSTKLTVHVPPRIQST 4174

Query: 1519 E---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNE--SKYICTKIHVTNHTEYHGCLQ 1683
            E   +   +    +P    G P PA+ W  +   L     KY           E +G L 
Sbjct: 4175 EVHYTVNENSQAVLPCVADGIPTPAINWKKDNVPLANLLGKYT---------VEPYGELI 4225

Query: 1684 LDNPTHMNNGDYKLVAKNEYGKDEKQIS 1767
            L+N    ++G Y  +A N  G+D   IS
Sbjct: 4226 LENVVLEDSGTYTCIANNAAGEDTHTIS 4253



 Score = 66.6 bits (161), Expect = 1e-10
 Identities = 52/199 (26%), Positives = 81/199 (40%), Gaps = 9/199 (4%)
 Frame = +1

Query: 1231 PSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW--DVGNLVSKHMNETSYTQGSLRITN 1404
            PS      +L +   KS  L C   G P P + W  D   L   H   +    G LRI +
Sbjct: 3713 PSIKSGPQSLVIHLNKSTLLECFAEGVPAPRITWRKDGAVLSGSHARYSVLENGFLRIQS 3772

Query: 1405 ISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTIT---FLESPTSDHHWCIPFTVKGNP 1575
                D G+ + C+A +  G D+  ++L VH  P+I       S T +    +     G P
Sbjct: 3773 AQVTDGGRYL-CMATSAAGTDRRRIDLQVHVPPSIAPGPTNISVTVNVQTTLACEATGIP 3831

Query: 1576 KPALQWFYNGAILNESKYICTKIHVTNHTEYH----GCLQLDNPTHMNNGDYKLVAKNEY 1743
            KP++ W  NG +LN  +         N   Y     G L + +P+  +   Y+    N+ 
Sbjct: 3832 KPSVNWRKNGHLLNVDQ---------NQNSYRLLSSGSLVIISPSVDDTATYECTVTNDA 3882

Query: 1744 GKDEKQISAHFMGWPGIDD 1800
            G+D++ +       P I D
Sbjct: 3883 GEDKRAVDLTVQVPPSIAD 3901



 Score = 63.9 bits (154), Expect = 6e-10
 Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 11/203 (5%)
 Frame = +1

Query: 1255 NLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHMNETSYTQGS--LRITNISSDDSGK 1428
            N++V E  S++L+C  +G P+P++ W          +      G   LR+    ++D+G 
Sbjct: 2395 NISVVEKSSVSLNCEASGIPLPSITWLKDGWPVNLSSSLRILSGGRILRLMQTRTEDAG- 2453

Query: 1429 QISCVAENLVGEDQDSVNLTVHFAPTI----TFLESPTSD-HHWCIPFTVKGNPKPALQW 1593
            Q +CV  N  GE++    L+V   P I    TF +    +     +   V GNP P + W
Sbjct: 2454 QYTCVVRNAAGEERKIFRLSVLVPPHIMGENTFEDVKVKEKQSVTLTCEVTGNPVPEITW 2513

Query: 1594 FYNGAILNESKYICTKIHVTNHTEYHG-CLQLDNPTHMNNGDYKLVAKNEYGKDEKQISA 1770
              +G +L E          T+H    G  LQ+ N    + G Y  +A N  G   K  S 
Sbjct: 2514 HKDGQLLKEDD--------THHLMSGGRFLQIVNAQVSHTGRYTCLASNTAGDKSKSFSL 2565

Query: 1771 HFMGWP---GIDDGANPNYPDVI 1830
            + +  P   G+D   +P    VI
Sbjct: 2566 NVLVSPIIAGVDGDGSPEDVTVI 2588



 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 9/223 (4%)
 Frame = +1

Query: 1147 LETQDLY-CLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPN 1323
            LE    Y C+  N+       + +    LP+      ++++ +G+ + L+C   G P+P 
Sbjct: 4231 LEDSGTYTCIANNAAGEDTHTISLTVHVLPTFTELPGDVSLNKGEQLRLNCKATGIPLPK 4290

Query: 1324 LYWDVGNLVSKHMNETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAP 1503
            L W   N +     ++      L I  IS +DSG  + C AEN VG  + ++       P
Sbjct: 4291 LTWTFNNNIIPAHFDSVNGHSELVIERISKEDSGTYV-CTAENSVGFVK-AIGFVYVKEP 4348

Query: 1504 TITFLESPTSDHHWCIPF--------TVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 1659
             +   + P+   +W  P          VKG+P P +QW   G  +  S  I         
Sbjct: 4349 PVFKGDYPS---NWIEPLGGNAILNCEVKGDPAPTIQWSRRGIDIEISHRI--------R 4397

Query: 1660 TEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWP 1788
               +G L +    + + GDY  VA NE G  E+ +S      P
Sbjct: 4398 QLGNGSLAIYGTVNEDAGDYTCVATNEAGVVERSMSLTLQSTP 4440



 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 5/183 (2%)
 Frame = +1

Query: 1231 PSANLAAPNLTVEEGKSITLSCSV-AGDPVPNLYWDVGN-LVSKHMNETSYTQGSLRITN 1404
            P   ++ P  +V EG+ +TL C++ AG+P+P   W   + ++ ++   T  + GSL I  
Sbjct: 890  PLIGISPPVTSVIEGQQLTLPCALLAGNPIPERRWIKNSAMLVQNPYITVRSDGSLHIER 949

Query: 1405 ISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHHWC---IPFTVKGNP 1575
            +   D G + +CVA N+ G    +  + VH  PTI   +   S        +P    G P
Sbjct: 950  VRLQDGG-EYTCVASNVAGITNKTTTVDVHVLPTIQHGQQILSTIEGIPVTLPCKASGIP 1008

Query: 1576 KPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDE 1755
            KP++ W   G ++  S                G L + +P    +G+Y   A N  G  +
Sbjct: 1009 KPSIAWSKKGELIFTSS-------AKFSAGADGSLYVVSPGGEESGEYVCTATNAAGYAK 1061

Query: 1756 KQI 1764
            +++
Sbjct: 1062 RKV 1064



 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 15/180 (8%)
 Frame = +1

Query: 1255 NLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHMNETSYTQGS--LRITNISSDDSGK 1428
            ++ V+E +S+TL+C V G+PVP + W     + K  +      G   L+I N     +G+
Sbjct: 2488 DVKVKEKQSVTLTCEVTGNPVPEITWHKDGQLLKEDDTHHLMSGGRFLQIVNAQVSHTGR 2547

Query: 1429 QISCVAENLVGEDQDSVNLTVHFAPTI-------------TFLESPTSDHHWCIPFTVKG 1569
              +C+A N  G+   S +L V  +P I               L SPTS     +      
Sbjct: 2548 -YTCLASNTAGDKSKSFSLNVLVSPIIAGVDGDGSPEDVTVILNSPTS-----LVCEAYS 2601

Query: 1570 NPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGK 1749
             P   + WF NG  L  ++ I  +I     T     LQ+ N    + G Y  VA NE G+
Sbjct: 2602 YPPATITWFKNGTPLESNQNI--RILPGGRT-----LQILNAQEDDAGRYACVATNEAGE 2654



 Score = 58.2 bits (139), Expect = 4e-08
 Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 8/189 (4%)
 Frame = +1

Query: 1258 LTVEEGKSITLSCSVAGDPVPNLYWDV-GNLVSKHMNETSYTQGS-LRITNISSDDSGKQ 1431
            +TV   KS+T+ CS +G P P   W   G  + +    T  + G  L++ N    D G+ 
Sbjct: 2882 VTVLVNKSVTMECSSSGSPTPRSSWQKDGQPLLEDERHTFLSNGRILQVLNSQITDIGRY 2941

Query: 1432 ISCVAENLVGEDQDSVNLTVHFAPTITFLE----SPTSDHHWCIPFTVKGNPKPALQWFY 1599
            + CVAEN  G  +   N  VH  P++        +   ++   +   V G P P L W  
Sbjct: 2942 V-CVAENTAGSAKKYFNFNVHVPPSVIGPNPENLTVVVNNFISLTCEVSGFPPPDLSWLK 3000

Query: 1600 NGAILNESKYICTKIHVTNHTEYHG--CLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAH 1773
            N   +  +         TN     G   LQ+      + G+Y  VA N+ G+ +K++S  
Sbjct: 3001 NEQPIKPN---------TNALIVPGGRTLQIIRAKVSDGGEYTCVAINQAGESKKKVSLT 3051

Query: 1774 FMGWPGIDD 1800
                P I D
Sbjct: 3052 VYVPPSIKD 3060



 Score = 57.0 bits (136), Expect = 8e-08
 Identities = 54/197 (27%), Positives = 80/197 (40%), Gaps = 12/197 (6%)
 Frame = +1

Query: 1255 NLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHMNETSYTQG--SLRITNISSDDSGK 1428
            NLTV     I+L+C V+G P P+L W       K         G  +L+I      D G 
Sbjct: 2973 NLTVVVNNFISLTCEVSGFPPPDLSWLKNEQPIKPNTNALIVPGGRTLQIIRAKVSDGG- 3031

Query: 1429 QISCVAENLVGEDQDSVNLTVHFAPTI----------TFLESPTSDHHWCIPFTVKGNPK 1578
            + +CVA N  GE +  V+LTV+  P+I            +   TS    C    V   P 
Sbjct: 3032 EYTCVAINQAGESKKKVSLTVYVPPSIKDHGSESLSVVNVREGTSVSLECGSNAV---PP 3088

Query: 1579 PALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEK 1758
            P + W+ NG +L ES     ++ +    +    L +      + G Y   A N  G+D+K
Sbjct: 3089 PVITWYKNGRMLTES----ARLEILADGQ---MLHITKAEVSDTGQYVCRAINVAGRDDK 3141

Query: 1759 QISAHFMGWPGIDDGAN 1809
                +    P I+   N
Sbjct: 3142 NFHLNVYVPPSIEGPEN 3158



 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 43/184 (23%), Positives = 77/184 (41%), Gaps = 5/184 (2%)
 Frame = +1

Query: 1231 PSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGN--LVSKHMNETSYTQGSLRITN 1404
            P   +   N +   G  +++ CS  G P P + W + +  ++  H    + ++G+L I N
Sbjct: 612  PKVTVMPKNQSFTAGSEVSIMCSATGYPKPKIAWTMNDVFIMGSHRYRMT-SEGNLFIKN 670

Query: 1405 ISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESP---TSDHHWCIPFTVKGNP 1575
                D+G    C+A N  G D+ +  L    AP +  ++S           +     G P
Sbjct: 671  AVPKDAG-IYGCLASNSAGMDKQTSTLRYIEAPKLIVVQSELLVALGDTTVMECKTSGVP 729

Query: 1576 KPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDE 1755
             P ++WF     L  S ++ T           G L++     ++ GDY  VA N+ G+  
Sbjct: 730  PPQVKWFKGDLELKPSTFLIT-------DPLLGLLKIQETQDLDAGDYTCVAVNDAGRAT 782

Query: 1756 KQIS 1767
             +I+
Sbjct: 783  GRIT 786



 Score = 53.9 bits (128), Expect = 7e-07
 Identities = 55/229 (24%), Positives = 89/229 (38%), Gaps = 8/229 (3%)
 Frame = +1

Query: 1168 CLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNL 1347
            CL  NS  +      +     P   +    L V  G +  + C  +G P P + W  G+L
Sbjct: 681  CLASNSAGMDKQTSTLRYIEAPKLIVVQSELLVALGDTTVMECKTSGVPPPQVKWFKGDL 740

Query: 1348 VSKHMNE--TSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLE 1521
              K      T    G L+I      D+G   +CVA N  G     + L V   P   F++
Sbjct: 741  ELKPSTFLITDPLLGLLKIQETQDLDAG-DYTCVAVNDAGRATGRITLDVGSPPV--FIQ 797

Query: 1522 SPTS-----DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH-GCLQ 1683
             PT        +  +P  V+G P+P ++W      ++          V++ ++   G L 
Sbjct: 798  EPTDVSVEIGSNVTLPCYVQGYPEPKIKW----RRVDNMPIFSRPFSVSSISQLRTGDLF 853

Query: 1684 LDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVI 1830
            + N    + G Y   A+N++GK + Q +    G      G +P    VI
Sbjct: 854  ISNLWASDKGTYICEAENQFGKIQSQTTVTVTGLVAPLIGISPPVTSVI 902



 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 48/179 (26%), Positives = 72/179 (40%), Gaps = 6/179 (3%)
 Frame = +1

Query: 1282 ITLSCSVAGDPVPNLYW-DVGNLVSKHMNETSYTQG-SLRITNISSDDSGKQISCVAENL 1455
            + L C V G P+P + W   G L+ +         G  L I      D+G    CVA N 
Sbjct: 1752 LELDCQVTGSPLPTIMWLKDGQLIDERDGFRILLNGHKLVIAQAQVSDTGLY-RCVATNT 1810

Query: 1456 VGEDQDSVNLTVHFAPTITFLESPTSDHHWCIPFTVK----GNPKPALQWFYNGAILNES 1623
             G+ +    +TVH  PTI              P T++    G P P++ W  +G  +N +
Sbjct: 1811 AGDHRKEFEVTVHVPPTIKSSGLSERAVLKYKPITLQCIANGIPNPSITWLKDGQPVNTA 1870

Query: 1624 KYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWPGIDD 1800
            +    KI  +        LQ+      + G Y  VA N  G+ ++ I  H    P +DD
Sbjct: 1871 QG-NLKIQSSGR-----LLQIAKALMEDAGRYTCVATNAAGETQQHIQLHVHEPPSLDD 1923



 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 12/187 (6%)
 Frame = +1

Query: 1249 APNLTVEEGKSITLSCSVAGDPVPNLYWDV--GNLVSKHMNETSYTQG--SLRITNISSD 1416
            A  LTV EG  I+L C  +G P PNL W      +++          G   L+I+     
Sbjct: 2203 AAQLTVIEGHLISLLCESSGIPPPNLIWKKKGSPVLADSAGRVRILSGGRQLQISVAEKS 2262

Query: 1417 DSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLES------PTSDHHWCIPFTVKGNPK 1578
            D+G   SC+A N+ G  +   +L V+  PTI+   S       T      +   V+G P+
Sbjct: 2263 DAG-LYSCMASNVAGTAKKDYSLQVYIRPTISNSGSHPTEIIVTRGKSVSLECEVEGVPQ 2321

Query: 1579 PALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEK 1758
            PA+ W  +G  L       TK       +    +QL N    + G Y  VA N  G  ++
Sbjct: 2322 PAVTWMKDGRPL-------TKGRGMEIMDEGRVVQLKNVHVSDTGRYVCVAMNIAGMTDR 2374

Query: 1759 Q--ISAH 1773
            +  +S H
Sbjct: 2375 KYDLSVH 2381



 Score = 52.0 bits (123), Expect = 3e-06
 Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 7/190 (3%)
 Frame = +1

Query: 1255 NLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHMNETSYTQGS--LRITNISSDDSGK 1428
            N++V   +  +L C V G P P + W   ++     +          L++   S +D+G 
Sbjct: 1369 NVSVLVNQPTSLFCEVEGTPSPIIMWYKDDVQVTESSSIQIVNNGKILKLFRTSPEDAGG 1428

Query: 1429 QISCVAENLVGEDQDSVNLTVHFAPTITFLESP-----TSDHHWCIPFTVKGNPKPALQW 1593
              SC A N+ G  Q   N+ V   PTI    SP       + +  +   VKG P P ++W
Sbjct: 1429 Y-SCKAVNVAGTSQKHFNIDVLVPPTIIGAGSPGEVSVVLNQNTTLECQVKGTPFPVIRW 1487

Query: 1594 FYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAH 1773
              +G  L         I + +  +    L L N    + G Y+    N  GK  K I   
Sbjct: 1488 LKDGKPLFLGD---PNIEILDRGQ---VLHLKNARRSDKGRYQCSVSNAAGKQAKDIKLT 1541

Query: 1774 FMGWPGIDDG 1803
                P I  G
Sbjct: 1542 IYIPPSIKGG 1551



 Score = 51.2 bits (121), Expect = 4e-06
 Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 8/186 (4%)
 Frame = +1

Query: 1255 NLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHMNETS----YTQGSLRITNISSDDS 1422
            N+TV  G++  L+C V      NL W   N     + +T+        SL + ++   D+
Sbjct: 528  NVTVTPGETAVLTCLVVSAVGYNLTWQ-RNDRDIRLTDTAGMRILANLSLELRSVKFSDA 586

Query: 1423 GKQISCVAENLVGEDQDSVNLTVHFAPTITFL---ESPTSDHHWCIPFTVKGNPKPALQW 1593
            G +  CV  N  G   ++V LTV   P +T +   +S T+     I  +  G PKP + W
Sbjct: 587  G-EYRCVVSNEGGSSTEAVFLTVQEPPKVTVMPKNQSFTAGSEVSIMCSATGYPKPKIAW 645

Query: 1594 FYNGA-ILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISA 1770
              N   I+   +Y  T           G L + N    + G Y  +A N  G D++  + 
Sbjct: 646  TMNDVFIMGSHRYRMTS---------EGNLFIKNAVPKDAGIYGCLASNSAGMDKQTSTL 696

Query: 1771 HFMGWP 1788
             ++  P
Sbjct: 697  RYIEAP 702



 Score = 50.8 bits (120), Expect = 6e-06
 Identities = 59/246 (23%), Positives = 94/246 (38%), Gaps = 20/246 (8%)
 Frame = +1

Query: 1126 LQETKPSLETQDLY-CLDEN-----SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSIT 1287
            LQ  K   E    Y C+  N     SK+  L  L+ P+    + +     ++V     + 
Sbjct: 3491 LQLIKAETEDSGRYTCIASNEAGEVSKHFILKILEPPHI---NGSEEPMEMSVIVNNPLE 3547

Query: 1288 LSCSVAGDPVPNLYWDVGNLVSKHMNETSYTQGS--LRITNISSDDSGKQISCVAENLVG 1461
            L+C  +G P P + W         M++     G   LRI++   +D+G+  +C+A +  G
Sbjct: 3548 LTCMASGIPAPKITWMKDGRPLPQMDQMQTLGGGEVLRISSTQVEDTGRY-TCLASSPAG 3606

Query: 1462 EDQDSVNLTVHFAPTITFLESPTSDHHWCIPFTVKGN------------PKPALQWFYNG 1605
            +D     + VH  P I     P         FTV  N            P P + W  NG
Sbjct: 3607 DDDKEYLVRVHVPPNIAGTGEPQD-------FTVLRNRQVTLECKSDAVPPPVITWLKNG 3659

Query: 1606 AILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGW 1785
              L  +     +I + +   Y   LQ++N    +  +Y  VA N  GK  ++        
Sbjct: 3660 ERLQAT----PRIRILSGGRY---LQINNADLGDTANYTCVASNIAGKTTREFILTVNVP 3712

Query: 1786 PGIDDG 1803
            P I  G
Sbjct: 3713 PSIKSG 3718



 Score = 50.4 bits (119), Expect = 7e-06
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 13/155 (8%)
 Frame = +1

Query: 1168 CLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWD-VGN 1344
            C+  N   I+     +    LP+       L+  EG  +TL C  +G P P++ W   G 
Sbjct: 960  CVASNVAGITNKTTTVDVHVLPTIQHGQQILSTIEGIPVTLPCKASGIPKPSIAWSKKGE 1019

Query: 1345 LV-SKHMNETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTI-TFL 1518
            L+ +     ++   GSL + +   ++SG+ + C A N  G  +  V LTV+  P +    
Sbjct: 1020 LIFTSSAKFSAGADGSLYVVSPGGEESGEYV-CTATNAAGYAKRKVQLTVYVRPRVFGDQ 1078

Query: 1519 ESPTSD----------HHWCIPFTVKGNPKPALQW 1593
              P+ D              +P  VKG P P + W
Sbjct: 1079 RGPSQDKPVEISVFAGEEVTLPCEVKGLPPPIITW 1113


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 90,785,655
Number of extensions: 2392181
Number of successful extensions: 9726
Number of sequences better than 1.0e-05: 98
Number of HSP's gapped: 9243
Number of HSP's successfully gapped: 155
Length of query: 832
Length of database: 17,681,374
Length adjustment: 111
Effective length of query: 721
Effective length of database: 14,008,606
Effective search space: 10100204926
Effective search space used: 10100204926
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012420
         (2497 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003130695.2| PREDICTED: BDNF/NT-3 growth factors receptor...   696   0.0  
Alignment   gi|NP_999436.1| NT-3 growth factor receptor precursor [Sus scro...   258   1e-68
Alignment   gi|XP_001929561.1| PREDICTED: high affinity nerve growth factor...   229   7e-60
Alignment   gi|XP_001929560.2| PREDICTED: high affinity nerve growth factor...   228   2e-59
Alignment   gi|XP_003357754.1| PREDICTED: hypothetical protein LOC100621648...   100   3e-21
Alignment   gi|XP_003134818.1| PREDICTED: leucine-rich repeat neuronal prot...    77   6e-14
Alignment   gi|XP_003129890.1| PREDICTED: neural cell adhesion molecule 1-l...    75   2e-13
Alignment   gi|XP_003358552.1| PREDICTED: leucine-rich repeat neuronal prot...    72   2e-12
Alignment   gi|XP_003130149.2| PREDICTED: leucine-rich repeat neuronal prot...    71   3e-12
Alignment   gi|XP_003130434.2| PREDICTED: hemicentin-1-like [Sus scrofa].         70   6e-12

>ref|XP_003130695.2| PREDICTED: BDNF/NT-3 growth factors receptor, partial [Sus scrofa].
          Length = 390

 Score =  696 bits (1795), Expect = 0.0
 Identities = 334/356 (93%), Positives = 334/356 (93%)
 Frame = +1

Query: 1003 NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN 1182
            NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN
Sbjct: 34   NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN 93

Query: 1183 SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 1362
            SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM
Sbjct: 94   SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 153

Query: 1363 NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 1542
            NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH
Sbjct: 154  NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 213

Query: 1543 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 1722
            WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK
Sbjct: 214  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 273

Query: 1723 LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 1902
            LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST
Sbjct: 274  LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 333

Query: 1903 DVADKTGREHLXXXXXXXXXXXXGFCXXXXXXXXXXARHSKFGMKGFVLFHKIPLD 2070
            DVADKTGREHL            GFC          ARHSKFGMKGFVLFHKIPLD
Sbjct: 334  DVADKTGREHLSVYAVVVIASVVGFCLLVMLFLLKLARHSKFGMKGFVLFHKIPLD 389


>ref|NP_999436.1| NT-3 growth factor receptor precursor [Sus scrofa].
          Length = 825

 Score =  258 bits (659), Expect = 1e-68
 Identities = 152/404 (37%), Positives = 216/404 (53%), Gaps = 31/404 (7%)
 Frame = +1

Query: 670  PAMARLW-----GFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEPS--- 825
            PA    W     G  WL   +  + LACP +C CS + I C  P  G + FP LE     
Sbjct: 7    PAKCSFWRIFLLGSVWL--DYVGSVLACPANCVCSKTEINCRRPDDGNL-FPLLEGQDSG 63

Query: 826  ----------TADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAF 975
                      T    NIT I+I N + L  +N  D+E Y GL+ LTI +SGL+S+  +AF
Sbjct: 64   NSNGNASINITDISRNITSIHIENWRGLHTLNAVDMELYTGLQKLTIKNSGLRSIQPRAF 123

Query: 976  LKNSNLQHINFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQET-KPSLE 1152
             KN +L++IN + N+LT LS + F+ L L EL L  N F CSCDI W++  QE  +  L 
Sbjct: 124  AKNPHLRYINLSSNRLTTLSWQLFQTLSLRELRLEQNFFNCSCDIRWMQLWQEQGEAKLN 183

Query: 1153 TQDLYCLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW 1332
            +Q LYC+  +   + L  + I  C LP  +++  NLTV EG +  ++C+ +G P+P++ W
Sbjct: 184  SQSLYCISADGSQLPLFRMNISQCDLPEISVSHVNLTVREGDNAVVTCNGSGSPLPDVDW 243

Query: 1333 DVGNLVS-----KHMNETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHF 1497
             V  L S      ++N T+    +L + N++S+D+G  ++C+AEN+VG    SV LTVH+
Sbjct: 244  IVTGLQSINTHQTNLNWTNVHAINLTLVNVTSEDNGFTLTCIAENVVGMSNASVALTVHY 303

Query: 1498 APTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH-- 1671
             P +  LE P      CI F V+GNP P L W +NG  L ESK          H EY+  
Sbjct: 304  PPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESK--------ITHVEYYQE 355

Query: 1672 -----GCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWP 1788
                 GCL  + PTH NNG+Y L  +   G   + I+ HF+  P
Sbjct: 356  GEVSEGCLLFNKPTHYNNGNYTLNRQEPLGTANQTINGHFLKEP 399


>ref|XP_001929561.1| PREDICTED: high affinity nerve growth factor receptor isoform 2 [Sus
            scrofa].
          Length = 815

 Score =  229 bits (583), Expect = 7e-60
 Identities = 153/448 (34%), Positives = 218/448 (48%), Gaps = 5/448 (1%)
 Frame = +1

Query: 535  ESGRRSKGRPAPAGEAGRCGSGTRTQSDSSWHWWLGMSSWTRWHGPAMARLWGFCWLIVG 714
            E+ RR  G P  AG A     G R Q                 HG A        WL++ 
Sbjct: 11   EAHRRRPG-PGEAGSAVMPRDGQRGQLGG--------------HGRAKGLGSLLAWLMLA 55

Query: 715  FWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEPSTADPENITEIYIANQKRLEIINE 894
               AA      C    S + C+      VA   +       EN+TE+YI NQ+ L+ +  
Sbjct: 56   SAGAASCPEVCCPHGPSGLRCTK-----VAALDIIRHLPGAENLTELYIENQQHLQHLTL 110

Query: 895  DDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHINFTRNKLTILSRKHFRHLDLSELI 1074
             D+     L+NLTIV SGL+ VA  AF     L H+N + N L  LS K  + L L EL+
Sbjct: 111  SDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSHLNLSFNALESLSWKTVQGLSLQELV 170

Query: 1075 LVGNPFRCSCDIMWIKTL-QETKPSLETQDLYCLDENSKNISLANLQIPNCGLPSANLAA 1251
            L GNP  CSC + W++   QE +  +  Q L C  +      LA +   +CG P   +  
Sbjct: 171  LSGNPLHCSCALFWLQRWEQEGRAGVREQKLQCPGQG----PLALMPNASCGEPELKIQM 226

Query: 1252 PNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKH--MNETSYTQGSLRITNISSDDSG 1425
            PN +V+ G  + L C V G  +    W + +L      M   S     L + +++SD + 
Sbjct: 227  PNGSVDVGDDVLLQCQVEGQGLEQAGWILMDLEESATVMQSGSLPSLGLTLAHVTSDLNR 286

Query: 1426 KQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNG 1605
            K ++C AEN VG  + SV + V F P ++ L +    HHWCIPF+V G P P+L+WF+NG
Sbjct: 287  KNVTCWAENHVGRAEISVQVNVSFPPIVS-LHTAVEQHHWCIPFSVDGQPAPSLRWFFNG 345

Query: 1606 AILNESKYICTKI--HVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFM 1779
            ++LNE+ +I T+      N T  HGCL+L+ PTH+NNG+Y L+A N  G++   I A FM
Sbjct: 346  SVLNETSFIFTEFMEPAANETMRHGCLRLNQPTHVNNGNYTLLATNPLGQNASSIMAAFM 405

Query: 1780 GWPGIDDGANPNYPDVIYEDYGTAANDI 1863
                 D+    N  D I +   T+ N +
Sbjct: 406  -----DNPFEFNPEDPIPDTNSTSGNPV 428


>ref|XP_001929560.2| PREDICTED: high affinity nerve growth factor receptor isoform 1 [Sus
            scrofa].
          Length = 795

 Score =  228 bits (580), Expect = 2e-59
 Identities = 137/380 (36%), Positives = 197/380 (51%), Gaps = 5/380 (1%)
 Frame = +1

Query: 664  HGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEPSTADPEN 843
            HG A        WL++    AA      C    S + C+      VA   +       EN
Sbjct: 13   HGRAKGLGSLLAWLMLASAGAASCPEVCCPHGPSGLRCTK-----VAALDIIRHLPGAEN 67

Query: 844  ITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHINFTRNKL 1023
            +TE+YI NQ+ L+ +   D+     L+NLTIV SGL+ VA  AF     L H+N + N L
Sbjct: 68   LTELYIENQQHLQHLTLSDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSHLNLSFNAL 127

Query: 1024 TILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTL-QETKPSLETQDLYCLDENSKNISL 1200
              LS K  + L L EL+L GNP  CSC + W++   QE +  +  Q L C  +      L
Sbjct: 128  ESLSWKTVQGLSLQELVLSGNPLHCSCALFWLQRWEQEGRAGVREQKLQCPGQG----PL 183

Query: 1201 ANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKH--MNETS 1374
            A +   +CG P   +  PN +V+ G  + L C V G  +    W + +L      M   S
Sbjct: 184  ALMPNASCGEPELKIQMPNGSVDVGDDVLLQCQVEGQGLEQAGWILMDLEESATVMQSGS 243

Query: 1375 YTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHHWCIP 1554
                 L + +++SD + K ++C AEN VG  + SV + V F P ++ L +    HHWCIP
Sbjct: 244  LPSLGLTLAHVTSDLNRKNVTCWAENHVGRAEISVQVNVSFPPIVS-LHTAVEQHHWCIP 302

Query: 1555 FTVKGNPKPALQWFYNGAILNESKYICTKI--HVTNHTEYHGCLQLDNPTHMNNGDYKLV 1728
            F+V G P P+L+WF+NG++LNE+ +I T+      N T  HGCL+L+ PTH+NNG+Y L+
Sbjct: 303  FSVDGQPAPSLRWFFNGSVLNETSFIFTEFMEPAANETMRHGCLRLNQPTHVNNGNYTLL 362

Query: 1729 AKNEYGKDEKQISAHFMGWP 1788
            A N  G++   I A FM  P
Sbjct: 363  ATNPLGQNASSIMAAFMDNP 382


>ref|XP_003357754.1| PREDICTED: hypothetical protein LOC100621648 [Sus scrofa].
          Length = 242

 Score =  100 bits (250), Expect = 3e-21
 Identities = 65/134 (48%), Positives = 66/134 (49%)
 Frame = +1

Query: 61  QTNFLEFLPLLCVSPHVTSPAVAEGXXXXXXXXXPGIGLEQEXXXXXXXXXXXXXXXXXX 240
           +TNFLEFLPLLCVSPHVTSPAVAE          PGIGLEQE                  
Sbjct: 116 KTNFLEFLPLLCVSPHVTSPAVAEAAAAAAAAA-PGIGLEQEPRSLLSSRSPSSVPSGRR 174

Query: 241 XXDXXXXXXXXXXXXXXXXXXXSQCASRKEPASQSVXXXXXXXXXXXXXXXXXXXQLPET 420
             D                   SQCASRKEPASQSV                   QLPET
Sbjct: 175 SLDPGAAGGRPEVRPG------SQCASRKEPASQSVPGARPPGARLPGHAAAAEAQLPET 228

Query: 421 VAPPVRRPEMPLPL 462
           VAPPVRRPEMPLPL
Sbjct: 229 VAPPVRRPEMPLPL 242


>ref|XP_003134818.1| PREDICTED: leucine-rich repeat neuronal protein 3-like [Sus scrofa].
          Length = 708

 Score = 76.6 bits (187), Expect = 6e-14
 Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 13/230 (5%)
 Frame = +1

Query: 841  NITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAH-KAFLKNSNLQHINFTRN 1017
            ++ E+ I N   L  I+   V+    L+ +   ++   S  H  AF +   L+ +    N
Sbjct: 285  HLKELGINNMPELISIDSLAVDNLPDLRKIEATNNPRLSYIHPNAFFRLPKLESLMLNSN 344

Query: 1018 KLTILSRKHFRHL-DLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLD------ 1176
             L+ L       L +L E+ +  NP RC C I WI   +     +E   L+C+D      
Sbjct: 345  ALSALYHGTVESLPNLKEISIHSNPIRCDCVIRWINMNKTNIRFMEPDSLFCVDPPEFQG 404

Query: 1177 ENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGN---L 1347
            +N + +    +      L +      NL +E G  ++L C    +P P +YW   +   L
Sbjct: 405  QNVRQVHFREMMEICLPLIAPESFPSNLDLEAGSYVSLHCRATAEPQPEIYWVTPSGKKL 464

Query: 1348 VSKHMNETSY--TQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTV 1491
            +   + +  Y  ++G+L IT I+  + G   +C+A NLVG D  S+ + V
Sbjct: 465  LPNTLTDKFYVHSEGTLDITGITPTEGG-LYTCIATNLVGADLKSIMIKV 513


>ref|XP_003129890.1| PREDICTED: neural cell adhesion molecule 1-like [Sus scrofa].
          Length = 848

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 57/237 (24%), Positives = 97/237 (40%), Gaps = 27/237 (11%)
 Frame = +1

Query: 1168 CLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNL 1347
            C+ EN      A++ +     P          +E  + +TL+C  +GDP+P++ W     
Sbjct: 277  CIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLTCEASGDPIPSITWRTSTR 336

Query: 1348 VSKHMNETSYTQ-------------------GSLRITNISSDDSGKQISCVAENLVGEDQ 1470
                  + S+T+                    SL + +I   D+G+ + C A N +G+D 
Sbjct: 337  NISSEEKASWTRPEKQETLDGHMVVRSHARVSSLTLKSIQYTDAGEYV-CTASNTIGQDS 395

Query: 1471 DSVNLTVHFAPTITFLESPTSDHHW-----CIPFTVKGNPKPALQWFYNGAILNESKYIC 1635
             S+ L V +AP    L+ P + + W      I   V   P   + WF +G +L  S Y  
Sbjct: 396  QSMYLEVQYAPK---LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSN 452

Query: 1636 TKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQ---ISAHFMGWPGID 1797
             KI+ T    Y   L++   +  + G+Y   A N  G++  +   + A     P ID
Sbjct: 453  IKIYNTPSASY---LEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID 506



 Score = 63.5 bits (153), Expect = 5e-10
 Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 17/187 (9%)
 Frame = +1

Query: 1255 NLTVEEGKSITLSCSVAGDPVPNLYWDV-GNLVSKHMNET---SYTQGSLRITNISSDDS 1422
            N T   G+S+TL C  AG P P + W   G  +    +E    S     L I  +  +D 
Sbjct: 213  NATANLGQSVTLVCDAAGFPEPTMSWTKDGEQIENEEDEKYLFSDDSSELTIRKVDKNDE 272

Query: 1423 GKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTS---DHHWCIPFTVKGNPKPALQW 1593
             + + C+AEN  GE   S++L V   P IT++E+ T+   +    +     G+P P++ W
Sbjct: 273  AEYV-CIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLTCEASGDPIPSITW 331

Query: 1594 FYNGA-ILNESKYICTKIHVTNHTEYH---------GCLQLDNPTHMNNGDYKLVAKNEY 1743
              +   I +E K   T+       + H           L L +  + + G+Y   A N  
Sbjct: 332  RTSTRNISSEEKASWTRPEKQETLDGHMVVRSHARVSSLTLKSIQYTDAGEYVCTASNTI 391

Query: 1744 GKDEKQI 1764
            G+D + +
Sbjct: 392  GQDSQSM 398


>ref|XP_003358552.1| PREDICTED: leucine-rich repeat neuronal protein 1-like [Sus scrofa].
          Length = 716

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 13/230 (5%)
 Frame = +1

Query: 844  ITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHK-AFLKNSNLQHINFTRNK 1020
            + E+ I N   L  ++   ++    L  L   ++   S  H+ AF     L+ +    N 
Sbjct: 289  LKELGINNMGELVSVDRYALDNLPELTKLEATNNPKLSYIHRLAFRSVPALESLMLNNNA 348

Query: 1021 LTILSRKHFRHL-DLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCL------DE 1179
            L  + +K    L +L E+ +  NP RC C I WI + +     +E   ++C        +
Sbjct: 349  LNAVYQKTVESLPNLREISIHSNPLRCDCVIHWINSNKTNIRFMEPLSMFCAMPPEYRGQ 408

Query: 1180 NSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW--DVGNLVS 1353
              K + + +       + S +    +L ++ G ++ L C    +P P +YW   +GN ++
Sbjct: 409  QVKEVLIQDSSEQCLPMISHDTFPNHLNMDIGTAVFLDCRAMAEPEPEIYWVTPLGNKIT 468

Query: 1354 KHMNETSY---TQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVH 1494
                   Y   ++G+L I NI  +DSG+  +CVA+N+ G D   V + V+
Sbjct: 469  VETLSEKYKLSSEGTLEIANIQIEDSGR-YTCVAQNVEGADTRVVTIKVN 517


>ref|XP_003130149.2| PREDICTED: leucine-rich repeat neuronal protein 2 [Sus scrofa].
          Length = 712

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 62/255 (24%), Positives = 106/255 (41%), Gaps = 13/255 (5%)
 Frame = +1

Query: 841  NITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAH-KAFLKNSNLQHINFTRN 1017
            ++ E+ + N + L  I++  +     L  L I ++   S  H +AF     ++ +    N
Sbjct: 286  HLKELGLNNMEELVSIDKFALVNLPELTKLDITNNPRLSFIHPRAFHHLPQMETLMLNNN 345

Query: 1018 KLTILSRKHFRHL-DLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDENS--- 1185
             L+ L ++    L +L E+ L GNP RC C I W          +E Q   C +      
Sbjct: 346  ALSALHQQTVESLPNLQEVGLHGNPIRCDCVIRWANATGTRVRFIEPQSTLCAEPPDLQR 405

Query: 1186 ---KNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSK 1356
               + +    +      L S      +L V  G+S+ L C    +P P +YW     V  
Sbjct: 406  RPVREVPFREMTDHCLPLISPRSFPSSLQVASGESLVLHCRALAEPEPEIYWVTPAGVRL 465

Query: 1357 HMNETS-----YTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLE 1521
                       Y +G+L +  ++ +++G   +CVA+NLVG D  +V++ V  AP      
Sbjct: 466  TAARAGRKYRVYPEGTLELRRVTVEEAG-LYTCVAQNLVGADTKTVSVVVGRAPL----- 519

Query: 1522 SPTSDHHWCIPFTVK 1566
             P  D  W +   V+
Sbjct: 520  QPGRDKGWGLELRVQ 534


>ref|XP_003130434.2| PREDICTED: hemicentin-1-like [Sus scrofa].
          Length = 288

 Score = 70.1 bits (170), Expect = 6e-12
 Identities = 67/225 (29%), Positives = 98/225 (43%), Gaps = 20/225 (8%)
 Frame = +1

Query: 1189 NISLANLQIPNCGLPSANLAAPNLTVEE--------GKSITLSCSVAGDPVPNLYW---D 1335
            +IS+A  Q     L    + AP + ++E        G ++TL C V G P P + W   D
Sbjct: 19   SISIARDQQQTLHLEEMVITAPPVFIQEPADVSMEIGSNVTLPCYVQGYPEPKIKWRRLD 78

Query: 1336 VGNLVSKHMNETSYTQ---GSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVH--FA 1500
               + S+  + +S +Q   G+L I+N+ + D G  I C AEN  G+ Q    LTV    A
Sbjct: 79   NMPIFSRPFSVSSISQLRTGALFISNLWASDKGTYI-CEAENQFGKIQSQTTLTVTGLVA 137

Query: 1501 PTITFLESPTS---DHHWCIPFTV-KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 1668
            P I    S TS        +P  +  GNP P  +W  N AIL ++ YI  +         
Sbjct: 138  PLIGISPSVTSVVEGQQLTLPCALLAGNPIPERRWMKNSAILVQNPYITVR--------R 189

Query: 1669 HGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWPGIDDG 1803
             G L ++    ++ G+Y  VA N  G   K  +      P I  G
Sbjct: 190  DGSLHIERVRLLDGGEYTCVATNVAGTINKTTTVDVHVLPTIQHG 234


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 58,615,542
Number of extensions: 1562883
Number of successful extensions: 6176
Number of sequences better than 1.0e-05: 57
Number of HSP's gapped: 5956
Number of HSP's successfully gapped: 76
Length of query: 832
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 725
Effective length of database: 8,679,953
Effective search space: 6292965925
Effective search space used: 6292965925
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012420
         (2497 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032771.1| BDNF/NT-3 growth factors receptor isoform b [Mu...   835   0.0  
Alignment   gi|NP_001020245.1| BDNF/NT-3 growth factors receptor isoform a ...   815   0.0  
Alignment   gi|NP_877961.1| NT-3 growth factor receptor isoform b [Mus musc...   263   6e-70
Alignment   gi|NP_032772.3| NT-3 growth factor receptor isoform a [Mus musc...   263   6e-70
Alignment   gi|NP_001028296.1| high affinity nerve growth factor receptor p...   214   2e-55
Alignment   gi|NP_035005.2| neural cell adhesion molecule 1 isoform 2 [Mus ...    79   1e-14
Alignment   gi|NP_001074914.1| neural cell adhesion molecule 1 isoform 1 [M...    79   1e-14
Alignment   gi|NP_001106675.1| neural cell adhesion molecule 1 isoform 3 [M...    79   1e-14
Alignment   gi|NP_034863.1| leucine-rich repeat neuronal protein 3 precurso...    75   2e-13
Alignment   gi|NP_001019891.2| hemicentin 1 [Mus musculus].                       72   2e-12

>ref|NP_032771.1| BDNF/NT-3 growth factors receptor isoform b [Mus musculus].
          Length = 476

 Score =  835 bits (2158), Expect = 0.0
 Identities = 394/476 (82%), Positives = 427/476 (89%)
 Frame = +1

Query: 643  MSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 822
            MS W +WHGPAMARLWG C L++GFWRA+LACPTSCKCS++RIWC++PSPGIVAFPRLEP
Sbjct: 1    MSPWLKWHGPAMARLWGLCLLVLGFWRASLACPTSCKCSSARIWCTEPSPGIVAFPRLEP 60

Query: 823  STADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHI 1002
            ++ DPENITEI IANQKRLEIINEDDVEAY GL+NLTIVDSGLK VA+KAFLKNSNL+HI
Sbjct: 61   NSVDPENITEILIANQKRLEIINEDDVEAYVGLRNLTIVDSGLKFVAYKAFLKNSNLRHI 120

Query: 1003 NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN 1182
            NFTRNKLT LSR+HFRHLDLS+LIL GNPF CSCDIMW+KTLQETK S +TQDLYCL+E+
Sbjct: 121  NFTRNKLTSLSRRHFRHLDLSDLILTGNPFTCSCDIMWLKTLQETKSSPDTQDLYCLNES 180

Query: 1183 SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 1362
            SKN+ LANLQIPNCGLPSA LAAPNLTVEEGKS+TLSCSV GDP+P LYWDVGNLVSKHM
Sbjct: 181  SKNMPLANLQIPNCGLPSARLAAPNLTVEEGKSVTLSCSVGGDPLPTLYWDVGNLVSKHM 240

Query: 1363 NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 1542
            NETS+TQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH
Sbjct: 241  NETSHTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 300

Query: 1543 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 1722
            WCIPFTV+GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY 
Sbjct: 301  WCIPFTVRGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 360

Query: 1723 LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 1902
            L+AKNEYGKDE+QISAHFMG PG+D   NPNYP+V+YED+ T   DIGDTTN+SNEIPST
Sbjct: 361  LMAKNEYGKDERQISAHFMGRPGVDYETNPNYPEVLYEDW-TTPTDIGDTTNKSNEIPST 419

Query: 1903 DVADKTGREHLXXXXXXXXXXXXGFCXXXXXXXXXXARHSKFGMKGFVLFHKIPLD 2070
            DVAD++ REHL            GFC          ARHSKFGMKGFVLFHKIPLD
Sbjct: 420  DVADQSNREHLSVYAVVVIASVVGFCLLVMLLLLKLARHSKFGMKGFVLFHKIPLD 475


>ref|NP_001020245.1| BDNF/NT-3 growth factors receptor isoform a [Mus musculus].
          Length = 821

 Score =  815 bits (2104), Expect = 0.0
 Identities = 384/466 (82%), Positives = 417/466 (89%)
 Frame = +1

Query: 643  MSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 822
            MS W +WHGPAMARLWG C L++GFWRA+LACPTSCKCS++RIWC++PSPGIVAFPRLEP
Sbjct: 1    MSPWLKWHGPAMARLWGLCLLVLGFWRASLACPTSCKCSSARIWCTEPSPGIVAFPRLEP 60

Query: 823  STADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHI 1002
            ++ DPENITEI IANQKRLEIINEDDVEAY GL+NLTIVDSGLK VA+KAFLKNSNL+HI
Sbjct: 61   NSVDPENITEILIANQKRLEIINEDDVEAYVGLRNLTIVDSGLKFVAYKAFLKNSNLRHI 120

Query: 1003 NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN 1182
            NFTRNKLT LSR+HFRHLDLS+LIL GNPF CSCDIMW+KTLQETK S +TQDLYCL+E+
Sbjct: 121  NFTRNKLTSLSRRHFRHLDLSDLILTGNPFTCSCDIMWLKTLQETKSSPDTQDLYCLNES 180

Query: 1183 SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 1362
            SKN+ LANLQIPNCGLPSA LAAPNLTVEEGKS+TLSCSV GDP+P LYWDVGNLVSKHM
Sbjct: 181  SKNMPLANLQIPNCGLPSARLAAPNLTVEEGKSVTLSCSVGGDPLPTLYWDVGNLVSKHM 240

Query: 1363 NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 1542
            NETS+TQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH
Sbjct: 241  NETSHTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 300

Query: 1543 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 1722
            WCIPFTV+GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY 
Sbjct: 301  WCIPFTVRGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 360

Query: 1723 LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 1902
            L+AKNEYGKDE+QISAHFMG PG+D   NPNYP+V+YED+ T   DIGDTTN+SNEIPST
Sbjct: 361  LMAKNEYGKDERQISAHFMGRPGVDYETNPNYPEVLYEDW-TTPTDIGDTTNKSNEIPST 419

Query: 1903 DVADKTGREHLXXXXXXXXXXXXGFCXXXXXXXXXXARHSKFGMKG 2040
            DVAD++ REHL            GFC          ARHSKFGMKG
Sbjct: 420  DVADQSNREHLSVYAVVVIASVVGFCLLVMLLLLKLARHSKFGMKG 465


>ref|NP_877961.1| NT-3 growth factor receptor isoform b [Mus musculus].
          Length = 612

 Score =  263 bits (671), Expect = 6e-70
 Identities = 153/400 (38%), Positives = 220/400 (55%), Gaps = 27/400 (6%)
 Frame = +1

Query: 670  PAMARLW-----GFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEPS--- 825
            PA    W     G  WL   +  + LACP +C CS + I C  P  G + FP LE     
Sbjct: 7    PAKCSFWRIFLLGSVWL--DYVGSVLACPANCVCSKTEINCRRPDDGNL-FPLLEGQDSG 63

Query: 826  ----------TADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAF 975
                      T    NIT I+I N + L  +N  D+E Y GL+ LTI +SGL+++  +AF
Sbjct: 64   NSNGNASINITDISRNITSIHIENWRGLHTLNAVDMELYTGLQKLTIKNSGLRNIQPRAF 123

Query: 976  LKNSNLQHINFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQET-KPSLE 1152
             KN +L++IN + N+LT LS + F+ L L EL L  N F CSCDI W++  QE  +  L+
Sbjct: 124  AKNPHLRYINLSSNRLTTLSWQLFQTLSLRELRLEQNFFNCSCDIRWMQLWQEQGEARLD 183

Query: 1153 TQDLYCLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW 1332
            +Q LYC+  +   + L  + I  C LP  +++  NLTV EG +  ++C+ +G P+P++ W
Sbjct: 184  SQSLYCISADGSQLPLFRMNISQCDLPEISVSHVNLTVREGDNAVITCNGSGSPLPDVDW 243

Query: 1333 DVGNLVS-----KHMNETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHF 1497
             V  L S      ++N T+    +L + N++S+D+G  ++C+AEN+VG    SV LTV++
Sbjct: 244  IVTGLQSINTHQTNLNWTNVHAINLTLVNVTSEDNGFTLTCIAENVVGMSNASVALTVYY 303

Query: 1498 APTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE---Y 1668
             P +  L  P      CI F V+GNP P L W YNG  L ESK     IH+  + E    
Sbjct: 304  PPRVVSLVEPEVRLEHCIEFVVRGNPTPTLHWLYNGQPLRESKI----IHMDYYQEGEVS 359

Query: 1669 HGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWP 1788
             GCL  + PTH NNG+Y L+AKN  G   + I+ HF+  P
Sbjct: 360  EGCLLFNKPTHYNNGNYTLIAKNALGTANQTINGHFLKEP 399


>ref|NP_032772.3| NT-3 growth factor receptor isoform a [Mus musculus].
          Length = 825

 Score =  263 bits (671), Expect = 6e-70
 Identities = 153/400 (38%), Positives = 220/400 (55%), Gaps = 27/400 (6%)
 Frame = +1

Query: 670  PAMARLW-----GFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEPS--- 825
            PA    W     G  WL   +  + LACP +C CS + I C  P  G + FP LE     
Sbjct: 7    PAKCSFWRIFLLGSVWL--DYVGSVLACPANCVCSKTEINCRRPDDGNL-FPLLEGQDSG 63

Query: 826  ----------TADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAF 975
                      T    NIT I+I N + L  +N  D+E Y GL+ LTI +SGL+++  +AF
Sbjct: 64   NSNGNASINITDISRNITSIHIENWRGLHTLNAVDMELYTGLQKLTIKNSGLRNIQPRAF 123

Query: 976  LKNSNLQHINFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQET-KPSLE 1152
             KN +L++IN + N+LT LS + F+ L L EL L  N F CSCDI W++  QE  +  L+
Sbjct: 124  AKNPHLRYINLSSNRLTTLSWQLFQTLSLRELRLEQNFFNCSCDIRWMQLWQEQGEARLD 183

Query: 1153 TQDLYCLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW 1332
            +Q LYC+  +   + L  + I  C LP  +++  NLTV EG +  ++C+ +G P+P++ W
Sbjct: 184  SQSLYCISADGSQLPLFRMNISQCDLPEISVSHVNLTVREGDNAVITCNGSGSPLPDVDW 243

Query: 1333 DVGNLVS-----KHMNETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHF 1497
             V  L S      ++N T+    +L + N++S+D+G  ++C+AEN+VG    SV LTV++
Sbjct: 244  IVTGLQSINTHQTNLNWTNVHAINLTLVNVTSEDNGFTLTCIAENVVGMSNASVALTVYY 303

Query: 1498 APTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE---Y 1668
             P +  L  P      CI F V+GNP P L W YNG  L ESK     IH+  + E    
Sbjct: 304  PPRVVSLVEPEVRLEHCIEFVVRGNPTPTLHWLYNGQPLRESKI----IHMDYYQEGEVS 359

Query: 1669 HGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWP 1788
             GCL  + PTH NNG+Y L+AKN  G   + I+ HF+  P
Sbjct: 360  EGCLLFNKPTHYNNGNYTLIAKNALGTANQTINGHFLKEP 399


>ref|NP_001028296.1| high affinity nerve growth factor receptor precursor [Mus musculus].
          Length = 799

 Score =  214 bits (546), Expect = 2e-55
 Identities = 123/325 (37%), Positives = 182/325 (56%), Gaps = 9/325 (2%)
 Frame = +1

Query: 841  NITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHINFTRNK 1020
            N+TE+Y+ NQ+ L+ +  +D++    L++LTIV SGL+ VA  AF     L H+N + N 
Sbjct: 67   NLTELYVENQQHLQRLEFEDLQGLGELRSLTIVKSGLRFVAPDAFRFTPRLSHLNLSSNA 126

Query: 1021 LTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTL-QETKPSLETQDLYCLDENSKNIS 1197
            L  LS K  + L L +L L GNP  CSC + W++   QE    + TQ L+      + + 
Sbjct: 127  LESLSWKTVQGLSLQDLTLSGNPLHCSCALFWLQRWEQEGLCGVHTQTLHDSGPGDQFLP 186

Query: 1198 LANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNL-----VSKHM 1362
            L +    +CG+P+  +  PN +VE G  + L C V G  +    W +  L     V K  
Sbjct: 187  LGH--NTSCGVPTVKIQMPNDSVEVGDDVFLQCQVEGLALQQADWILTELEGAATVKKFG 244

Query: 1363 NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 1542
            +  S     L + N++SD + K ++C AEN VG  + SV ++V F P    L      HH
Sbjct: 245  DLPSL---GLILVNVTSDLNKKNVTCWAENDVGRAEVSVQVSVSF-PASVHLGLAVEQHH 300

Query: 1543 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKI---HVTNHTEYHGCLQLDNPTHMNNG 1713
            WCIPF+V G P P+L+W +NG++LNE+ +I T+     +TN T  HGCL+L+ PTH+NNG
Sbjct: 301  WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTQFLESALTNETMRHGCLRLNQPTHVNNG 360

Query: 1714 DYKLVAKNEYGKDEKQISAHFMGWP 1788
            +Y L+A N YG+    + A FM  P
Sbjct: 361  NYTLLAANPYGQAAASVMAAFMDNP 385


>ref|NP_035005.2| neural cell adhesion molecule 1 isoform 2 [Mus musculus].
          Length = 725

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 17/227 (7%)
 Frame = +1

Query: 1168 CLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW--DVG 1341
            C+ EN      A++ +     P          +E  + +TL+C  +GDP+P++ W     
Sbjct: 288  CIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLTCEASGDPIPSITWRTSTR 347

Query: 1342 NLVSK------HMNETSYTQ-GSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFA 1500
            N+ S+      HM   S+ +  SL + +I   D+G+ I C A N +G+D  S+ L V +A
Sbjct: 348  NISSEEKTLDGHMVVRSHARVSSLTLKSIQYTDAGEYI-CTASNTIGQDSQSMYLEVQYA 406

Query: 1501 PTITFLESPTSDHHW-----CIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 1665
            P    L+ P + + W      I   V   P   + WF +G +L  S Y   KI+ T    
Sbjct: 407  PK---LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 463

Query: 1666 YHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQ---ISAHFMGWPGID 1797
            Y   L++   +  + G+Y   A N  G++  +   + A     P ID
Sbjct: 464  Y---LEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID 507



 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 10/180 (5%)
 Frame = +1

Query: 1255 NLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHMNET------SYTQGSLRITNISSD 1416
            N T   G+S+TL C   G P P + W       ++  E       S     L I N+  +
Sbjct: 222  NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN 281

Query: 1417 DSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTS---DHHWCIPFTVKGNPKPAL 1587
            D  + + C+AEN  GE   S++L V   P IT++E+ T+   +    +     G+P P++
Sbjct: 282  DEAEYV-CIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLTCEASGDPIPSI 340

Query: 1588 QWFYNGA-ILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQI 1764
             W  +   I +E K +   + V +H      L L +  + + G+Y   A N  G+D + +
Sbjct: 341  TWRTSTRNISSEEKTLDGHMVVRSHARV-SSLTLKSIQYTDAGEYICTASNTIGQDSQSM 399


>ref|NP_001074914.1| neural cell adhesion molecule 1 isoform 1 [Mus musculus].
          Length = 848

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 17/227 (7%)
 Frame = +1

Query: 1168 CLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW--DVG 1341
            C+ EN      A++ +     P          +E  + +TL+C  +GDP+P++ W     
Sbjct: 288  CIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLTCEASGDPIPSITWRTSTR 347

Query: 1342 NLVSK------HMNETSYTQ-GSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFA 1500
            N+ S+      HM   S+ +  SL + +I   D+G+ I C A N +G+D  S+ L V +A
Sbjct: 348  NISSEEKTLDGHMVVRSHARVSSLTLKSIQYTDAGEYI-CTASNTIGQDSQSMYLEVQYA 406

Query: 1501 PTITFLESPTSDHHW-----CIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 1665
            P    L+ P + + W      I   V   P   + WF +G +L  S Y   KI+ T    
Sbjct: 407  PK---LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 463

Query: 1666 YHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQ---ISAHFMGWPGID 1797
            Y   L++   +  + G+Y   A N  G++  +   + A     P ID
Sbjct: 464  Y---LEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID 507



 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 10/180 (5%)
 Frame = +1

Query: 1255 NLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHMNET------SYTQGSLRITNISSD 1416
            N T   G+S+TL C   G P P + W       ++  E       S     L I N+  +
Sbjct: 222  NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN 281

Query: 1417 DSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTS---DHHWCIPFTVKGNPKPAL 1587
            D  + + C+AEN  GE   S++L V   P IT++E+ T+   +    +     G+P P++
Sbjct: 282  DEAEYV-CIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLTCEASGDPIPSI 340

Query: 1588 QWFYNGA-ILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQI 1764
             W  +   I +E K +   + V +H      L L +  + + G+Y   A N  G+D + +
Sbjct: 341  TWRTSTRNISSEEKTLDGHMVVRSHARV-SSLTLKSIQYTDAGEYICTASNTIGQDSQSM 399


>ref|NP_001106675.1| neural cell adhesion molecule 1 isoform 3 [Mus musculus].
          Length = 1115

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 17/227 (7%)
 Frame = +1

Query: 1168 CLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW--DVG 1341
            C+ EN      A++ +     P          +E  + +TL+C  +GDP+P++ W     
Sbjct: 288  CIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLTCEASGDPIPSITWRTSTR 347

Query: 1342 NLVSK------HMNETSYTQ-GSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFA 1500
            N+ S+      HM   S+ +  SL + +I   D+G+ I C A N +G+D  S+ L V +A
Sbjct: 348  NISSEEKTLDGHMVVRSHARVSSLTLKSIQYTDAGEYI-CTASNTIGQDSQSMYLEVQYA 406

Query: 1501 PTITFLESPTSDHHW-----CIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 1665
            P    L+ P + + W      I   V   P   + WF +G +L  S Y   KI+ T    
Sbjct: 407  PK---LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 463

Query: 1666 YHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQ---ISAHFMGWPGID 1797
            Y   L++   +  + G+Y   A N  G++  +   + A     P ID
Sbjct: 464  Y---LEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID 507



 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 10/180 (5%)
 Frame = +1

Query: 1255 NLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHMNET------SYTQGSLRITNISSD 1416
            N T   G+S+TL C   G P P + W       ++  E       S     L I N+  +
Sbjct: 222  NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN 281

Query: 1417 DSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTS---DHHWCIPFTVKGNPKPAL 1587
            D  + + C+AEN  GE   S++L V   P IT++E+ T+   +    +     G+P P++
Sbjct: 282  DEAEYV-CIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLTCEASGDPIPSI 340

Query: 1588 QWFYNGA-ILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQI 1764
             W  +   I +E K +   + V +H      L L +  + + G+Y   A N  G+D + +
Sbjct: 341  TWRTSTRNISSEEKTLDGHMVVRSHARV-SSLTLKSIQYTDAGEYICTASNTIGQDSQSM 399


>ref|NP_034863.1| leucine-rich repeat neuronal protein 3 precursor [Mus musculus].
          Length = 707

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 13/230 (5%)
 Frame = +1

Query: 841  NITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAH-KAFLKNSNLQHINFTRN 1017
            ++ E+ I N   L  I+   V+    L+ +   ++   S  H  AF +   L+ +    N
Sbjct: 285  HLKELGINNMPELVSIDSLAVDNLPDLRKIEATNNPRLSYIHPNAFFRLPKLESLMLNTN 344

Query: 1018 KLTILSRKHFRHL-DLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLD------ 1176
             L+ L       L +L E+ +  NP RC C I WI   +     +E   L+C+D      
Sbjct: 345  ALSALYHGTIESLPNLKEISIHSNPIRCDCVIRWINMNKTNIRFMEPDSLFCVDPPEFQG 404

Query: 1177 ENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGN---L 1347
            +N + +   ++      L +      +L VE    ++L C    +P P +YW   +   L
Sbjct: 405  QNVRQVHFRDMMEICLPLIAPESFPSDLDVEADSYVSLHCRATAEPQPEIYWITPSGKKL 464

Query: 1348 VSKHMNETSY--TQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTV 1491
            +   M E  Y  ++G+L I  I+  + G   +C+A NLVG D  S+ + V
Sbjct: 465  LPNTMREKFYVHSEGTLEIRGITPKEGG-LYTCIATNLVGADLKSIMIKV 513


>ref|NP_001019891.2| hemicentin 1 [Mus musculus].
          Length = 5634

 Score = 72.4 bits (176), Expect = 2e-12
 Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 10/210 (4%)
 Frame = +1

Query: 1168 CLDENSKNISLA----NLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWD 1335
            C+ +N    +L     N+Q+P    P  +       V   K ++L C   G P P++ W 
Sbjct: 4057 CVAQNPAGTALGKVKLNVQVP----PVISSHQKEYVVTMDKPVSLLCETEGSPPPDITWH 4112

Query: 1336 V-GNLVSKHMNETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTIT 1512
              G+ +++ + +     G+L+I     DD+G Q +C+A N+ G    S  LTVH  P I 
Sbjct: 4113 KDGHALTESIRQRILNSGALQIAFAQPDDAG-QYTCMAANMAGSSSVSSTLTVHVPPRIQ 4171

Query: 1513 FLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNE--SKYICTKIHVTNHTEYHGC 1677
              E   +   +    +P    G P PA+ W  +G ++     KY           + +G 
Sbjct: 4172 STEVHFTVNENSQAVLPCVADGIPTPAIHWEKDGVLIANLLGKYT---------AQPYGE 4222

Query: 1678 LQLDNPTHMNNGDYKLVAKNEYGKDEKQIS 1767
            L L+N    ++G Y  VA N  G+D + ++
Sbjct: 4223 LILENVVLEDSGTYTCVANNAAGEDTRIVT 4252



 Score = 71.2 bits (173), Expect = 4e-12
 Identities = 70/239 (29%), Positives = 106/239 (44%), Gaps = 13/239 (5%)
 Frame = +1

Query: 1126 LQETKPSLETQDLYCLDENSKNISLANLQIPNCGLPSANLAAPN-LTVEEGKSITLSCSV 1302
            +QET+  L+  D  C+  N    +   L + + G P   +  P+ + VE G ++TL C V
Sbjct: 759  IQETQ-DLDAGDYTCVAINEAGRATGRLTL-DVGSPPVFIQEPSDVAVEIGSNVTLPCYV 816

Query: 1303 AGDPVPNLYW---DVGNLVSKHMNETSYTQ---GSLRITNISSDDSGKQISCVAENLVG- 1461
             G P P + W   D   + S+  + +  +Q   G+L I+N+ + D G  I C AEN  G 
Sbjct: 817  QGYPEPKIKWRRLDNMPVFSRPFSVSFISQLRTGALFISNLWASDKGTYI-CEAENQFGK 875

Query: 1462 -EDQDSVNLTVHFAPTITFLESPTS---DHHWCIPFT-VKGNPKPALQWFYNGAILNESK 1626
             + Q +V +T   AP I    S  S        +P T + GNP P  +W  N A+L ++ 
Sbjct: 876  IQSQTTVTVTGLVAPLIGISPSMASVIEGQPLTLPCTLLAGNPIPERRWMKNSAMLVQNP 935

Query: 1627 YICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWPGIDDG 1803
            YI  +          G L ++     + G Y  VA N  G + K  S      P I  G
Sbjct: 936  YITVR--------SDGSLHIERVRLQDGGKYTCVASNVAGTNNKTTSVAVHVLPSIQHG 986



 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 7/198 (3%)
 Frame = +1

Query: 1228 LPSANLAAPN-LTVEEGKSITLSCSVAGDPVPNLYWDV-GNLVSKHMNETSYTQG-SLRI 1398
            +  AN   P  +TV   KS  + CS +G+P P  YW   G ++ +  +    + G SL+I
Sbjct: 2870 IKGANSDLPEEVTVLVNKSTQMECSSSGNPAPRNYWQKDGQILLEDEHHKFQSDGRSLQI 2929

Query: 1399 TNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLE----SPTSDHHWCIPFTVK 1566
             N    D+G+ + CVAEN  G  +   NL VH  P++        S   +H   +   V 
Sbjct: 2930 LNAQITDTGRYV-CVAENTAGSAKKYFNLNVHVPPSVIGPNHEHLSVVVNHFISLNCEVS 2988

Query: 1567 GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYG 1746
            G P P L W  N   +  +  + T             LQ+      + GDY  +A N+ G
Sbjct: 2989 GFPPPDLSWLKNEEPIKPNTNVLT-------VPGGRTLQIIRAKISDGGDYTCIAINQAG 3041

Query: 1747 KDEKQISAHFMGWPGIDD 1800
            + +K++S      P I D
Sbjct: 3042 ESKKKVSLTVHVPPSIKD 3059



 Score = 65.1 bits (157), Expect = 3e-10
 Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 8/195 (4%)
 Frame = +1

Query: 1228 LPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHMNETSYTQGSLRITNI 1407
            LP+      +L++ +G+ + LSC   G P+P L W   N +     ++      L I  +
Sbjct: 4258 LPTFTELPGDLSLNKGEQLRLSCKAVGIPLPKLTWTFNNNIIPAHFDSINGHSELVIEKV 4317

Query: 1408 SSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHHWCIPF--------TV 1563
            S +DSG  + C AEN VG  + ++       P +   + P+   +W  P          V
Sbjct: 4318 SKEDSGTYV-CTAENSVGFVK-AIGFVYVKEPPVFKGDYPS---NWIEPLGGNAILNCEV 4372

Query: 1564 KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEY 1743
            KG+P P +QW   GA +  S  I            +G L +    + + GDY  VA NE 
Sbjct: 4373 KGDPAPTIQWSRKGADIEISHRI--------RQLGNGSLAIYGTVNEDAGDYTCVAANEA 4424

Query: 1744 GKDEKQISAHFMGWP 1788
            G  E+ +S      P
Sbjct: 4425 GMVERSMSLTLQSSP 4439



 Score = 64.3 bits (155), Expect = 4e-10
 Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 8/172 (4%)
 Frame = +1

Query: 1255 NLTVEEGKSITLSCSVAGDPVPNLYWD-----VGNLVSKHMNETSYTQGSLRITNISSDD 1419
            + TV E     L C   G P P ++W+     + NL+ K+   T+   G L + N+  +D
Sbjct: 4176 HFTVNENSQAVLPCVADGIPTPAIHWEKDGVLIANLLGKY---TAQPYGELILENVVLED 4232

Query: 1420 SGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTS---DHHWCIPFTVKGNPKPALQ 1590
            SG   +CVA N  GED   V L VH  PT T L    S        +     G P P L 
Sbjct: 4233 SGTY-TCVANNAAGEDTRIVTLAVHTLPTFTELPGDLSLNKGEQLRLSCKAVGIPLPKLT 4291

Query: 1591 WFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYG 1746
            W +N  I+           +  H+E    L ++  +  ++G Y   A+N  G
Sbjct: 4292 WTFNNNIIP-----AHFDSINGHSE----LVIEKVSKEDSGTYVCTAENSVG 4334



 Score = 63.5 bits (153), Expect = 7e-10
 Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 15/183 (8%)
 Frame = +1

Query: 1255 NLTVEEGKSITLSCSVAGDPVPNLYWDV-GNLVSKHMNETSYTQGS-LRITNISSDDSGK 1428
            ++ ++E +S+TL+C V G+PVP + W   G L+ +       + G  L+ITN     +G+
Sbjct: 2487 DVKIKEKQSVTLTCEVRGNPVPQITWHKDGQLLQEDEAHHMMSGGRFLQITNAQVSHTGR 2546

Query: 1429 QISCVAENLVGEDQDSVNLTVHFAPT-------------ITFLESPTSDHHWCIPFTVKG 1569
              +C+A N+ G+   S  L V  +PT             I  L SPTS     +      
Sbjct: 2547 -YTCLASNIAGDKSKSFRLNVFVSPTIAGVDSDGSPEDVIVILNSPTS-----LVCEAYS 2600

Query: 1570 NPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGK 1749
             P   + WF +G  L  ++ I  +I     T     LQ+ N    N G Y  VA NE G+
Sbjct: 2601 YPPATITWFKDGTPLESNRNI--RILPGGRT-----LQILNAQEDNAGRYSCVATNEAGE 2653

Query: 1750 DEK 1758
              K
Sbjct: 2654 KIK 2656



 Score = 62.4 bits (150), Expect = 2e-09
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 9/178 (5%)
 Frame = +1

Query: 1255 NLTVEEGKSITLSCSVAGDPVPNLYW-DVGNLVSKHMNETSYTQGSLRITNISSDDSGKQ 1431
            ++ V+ G+ + + C+  G P P + W   G              G+L I      D+G  
Sbjct: 1179 HIKVQVGQRVDILCNAHGSPPPVITWFKSGRPFLDGAQHPGSPDGTLSIEQAVISDAGVY 1238

Query: 1432 ISCVAENLVGEDQDSVNLTVHFAPTITFLESP--------TSDHHWCIPFTVKGNPKPAL 1587
             +C A N+ G D+  V L V   P++  L+ P         ++     P   KG PKP +
Sbjct: 1239 -TCAATNIAGSDEAEVTLHVQEPPSVEDLQPPFNTPFQERLANQRIEFPCPAKGTPKPTI 1297

Query: 1588 QWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQ 1761
            +W +NG      + +  +    +  E    L + + T  NNG+Y  VA NE G  E++
Sbjct: 1298 KWLHNG------REVTGQEPGVSILEDGALLVIASVTPHNNGEYICVAVNEAGTTERK 1349



 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 12/212 (5%)
 Frame = +1

Query: 1231 PSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW-DVGNLVSKHMNETSY---TQGSLRI 1398
            PS  +   N+TV      TL+C   G P P++ W   G+L++   N+ SY   + GSL I
Sbjct: 3803 PSIAMGPTNVTVTVNVQTTLACEATGIPKPSVTWRKNGHLLNVDQNQNSYRLLSSGSLVI 3862

Query: 1399 TNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESP-----TSDHHWCIPFTV 1563
             + S DD+     C   +  GED+ +V+LTV   PTI   + P     T      +  + 
Sbjct: 3863 ISPSVDDTA-SYECTVTSDAGEDKRAVDLTVQVPPTIA--DEPMDFLVTRQAPAVMTCSA 3919

Query: 1564 KGNPKPALQWFYNGAIL---NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAK 1734
             G P P++ W  NG  L    +   I +           G +++      + G Y  VA+
Sbjct: 3920 SGVPVPSIHWTKNGLRLLPRGDGYRILSS----------GAIEIPTTQLNHAGRYTCVAR 3969

Query: 1735 NEYGKDEKQISAHFMGWPGIDDGANPNYPDVI 1830
            N  G   + ++      P I     P+  DVI
Sbjct: 3970 NAAGSAHRHVTLRVQEPPVIQ--PQPSELDVI 3999



 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 60/276 (21%), Positives = 101/276 (36%), Gaps = 45/276 (16%)
 Frame = +1

Query: 1228 LPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWD-VGNLVSKHMNETSY-TQGSLRIT 1401
            LPS       L+  EG  +TL C  +G P P++ W   G L+S    + S    GSL + 
Sbjct: 980  LPSIQHGQQILSTIEGVPVTLPCRASGIPKPSITWSKKGELISTSSAKFSAGADGSLYVV 1039

Query: 1402 NISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLE-----------SPTSDHHWC 1548
            +  S++SG+ I C A N  G  +  V LTV+  P +   +           S  +     
Sbjct: 1040 SPGSEESGEYI-CTATNAAGYAKRKVQLTVYVRPRVFGDQRGLSQDKPVEISVLAGEEAI 1098

Query: 1549 IPFTVKGNPKPALQWFYNGAIL-----------------------NESKYICTKIHVTNH 1659
            +P   K  P P + W  +  ++                       +   Y+C   ++  +
Sbjct: 1099 LPCEAKSLPPPIITWAKDSQLISPFSPRHTFLPSGSMKITETRVSDSGMYLCVATNIAGN 1158

Query: 1660 TEYHGCLQLDNPTHMNNGDYKL---------VAKNEYGKDEKQISAHFMGWPGIDDGANP 1812
                  L +  P  + +G+  +         +  N +G     I+    G P +D   +P
Sbjct: 1159 VTQSVKLSVHVPPKIQHGNRHIKVQVGQRVDILCNAHGSPPPVITWFKSGRPFLDGAQHP 1218

Query: 1813 NYPDVIYEDYGTAANDIGDTTNRSNEIPSTDVADKT 1920
              PD          +D G  T  +  I  +D A+ T
Sbjct: 1219 GSPDGTLSIEQAVISDAGVYTCAATNIAGSDEAEVT 1254



 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 4/177 (2%)
 Frame = +1

Query: 1231 PSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHMNETSYT-QGSLRITNI 1407
            P   +   N +   G  I++ CS  G P P + W +  +     +    T +G+L I N 
Sbjct: 612  PKVTVMPKNQSFTGGSEISIMCSATGYPKPKIVWTMNEMFIMGSHRYRMTSEGTLFIKNA 671

Query: 1408 SSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESP---TSDHHWCIPFTVKGNPK 1578
               D+G   +C+A N  G D+ +  L    AP +   +S           +     G P 
Sbjct: 672  VPKDAG-TYACLASNAAGTDKQTSTLRYIEAPKLVVEQSELLVALGDTTVMECKTSGIPP 730

Query: 1579 PALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGK 1749
            P ++WF     L  S ++     V       G L++     ++ GDY  VA NE G+
Sbjct: 731  PQVKWFKGDLELRPSTFLSIDPLV-------GLLKIQETQDLDAGDYTCVAINEAGR 780



 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 14/197 (7%)
 Frame = +1

Query: 1252 PNLTVEEGKSITLSCSVAGDPVPNLYW-DVGNLVSKHMNETSYTQGS-LRITNISSDDSG 1425
            P +TV  GKSI+L C V G P P + W   G  ++K        +G  L++ N+   D+G
Sbjct: 2299 PEITVIRGKSISLECEVQGIPQPTVTWMKDGRPLTKGKGVEILDEGRILQLKNVHVSDTG 2358

Query: 1426 KQISCVAENLVGEDQDSVNLTVHFAPTITFLE------SPTSDHHWCIPFTVKGNPKPAL 1587
            + + CVA N+ G      +L+VH  P+I          S        +     G P P++
Sbjct: 2359 RYV-CVAVNVAGMTDKRYDLSVHAPPSIIGNHGVPENVSVVEKSSVSLTCEASGIPLPSI 2417

Query: 1588 QWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQ-- 1761
             W  +G  +N    + + + + +       L+L      + G Y  + +N  G+D K   
Sbjct: 2418 TWLKDGWPVN----LGSSVKILSGGR---MLRLMQTRPEDAGQYTCIVRNAAGEDRKMFG 2470

Query: 1762 ----ISAHFMGWPGIDD 1800
                +  H +G   ++D
Sbjct: 2471 LSVLVPPHIVGENTLED 2487



 Score = 55.1 bits (131), Expect = 3e-07
 Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 7/190 (3%)
 Frame = +1

Query: 1255 NLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHMNETSYTQGS--LRITNISSDDSGK 1428
            N++V   +  +L C V G P P + W   ++     +          L++  +S++D+G+
Sbjct: 1368 NVSVLTSQLASLYCEVEGTPSPVITWYKDDIQVTESSTVQIVNNGKILKLFKVSAEDAGR 1427

Query: 1429 QISCVAENLVGEDQDSVNLTVHFAPTITFLESPTS-----DHHWCIPFTVKGNPKPALQW 1593
              SC A N+ G  Q   ++ V   P+I    SP+      +H+  +     G P PA+ W
Sbjct: 1428 Y-SCKAINIAGTSQKDFSVNVLVPPSILGASSPSEVSVVLNHNVTLQCPGTGVPFPAIHW 1486

Query: 1594 FYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAH 1773
            F +G  L         I +++  +    L L N    + G Y+    N  GK  K I   
Sbjct: 1487 FKDGKPLFLGD---PNIELSDRGQ---SLHLRNARRSDKGRYQCTVSNAAGKQAKDIKLT 1540

Query: 1774 FMGWPGIDDG 1803
                P I  G
Sbjct: 1541 VYVPPSIKGG 1550



 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 63/284 (22%), Positives = 106/284 (37%), Gaps = 40/284 (14%)
 Frame = +1

Query: 1072 ILVGNPFRCSC--------DIMWIKTLQETKPSLETQDLYCLDENSKNISLANLQIPNCG 1227
            ++V NP   SC         I W+K   + +P L+T+ +  L E    + +++ Q+ + G
Sbjct: 3539 VIVNNPLELSCIASGIPAPKISWMK---DGRPFLQTEQVQTL-EGGAILRVSSAQVEDTG 3594

Query: 1228 LPSANLAAP-------------------------NLTVEEGKSITLSCSVAGDPVPNLYW 1332
              +   ++P                         + TV   + +TL C     P P + W
Sbjct: 3595 RYTCLASSPAGDDDKEYLVRVHVPPNIAGMDEAQDFTVLRNRQVTLECKSDAVPPPVIMW 3654

Query: 1333 DVGNLVSKHMNETSYTQGS--LRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPT 1506
                   +         G   L+I N    D+    +CVA N+ G+     NLTV+  P+
Sbjct: 3655 LKNREQLQATPRVRILSGGRYLQINNADLGDTANY-TCVASNIAGKTTREFNLTVNVPPS 3713

Query: 1507 ITFLESPTS-----DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 1671
            I     P S     +    +    +G P P + W  +G +L ES       H       +
Sbjct: 3714 IG--GGPQSLVTLLNKSIALECRAEGVPAPRITWRKDGVVLAES-------HARYSILEN 3764

Query: 1672 GCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWPGIDDG 1803
            G L +++    + G Y  +A N  G D ++I       P I  G
Sbjct: 3765 GFLHIESAHVTDTGRYLCMATNVAGTDRRRIDLQVHVPPSIAMG 3808



 Score = 53.1 bits (126), Expect = 1e-06
 Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 7/190 (3%)
 Frame = +1

Query: 1282 ITLSCSVAGDPVPNLYW-DVGNLVSKHMNETSYTQG-SLRITNISSDDSGKQISCVAENL 1455
            + L C V+G P P + W   G L+ +         G  L I      D+G    CVA N+
Sbjct: 1751 LELDCQVSGSPPPTIMWLKGGQLIDERDGFKILLNGRKLVIAQAQVSDTGLY-QCVATNI 1809

Query: 1456 VGEDQDSVNLTVHFAPTITFLESPTSDHHWCIPFTVK----GNPKPALQWFYNGAILNES 1623
             G+ +    +TVH  PTI   + P        P T++    G P P++ W  +   +N +
Sbjct: 1810 AGDHRKEFEVTVHVPPTIKSSDLPEKTVVRYKPVTLQCIANGIPNPSITWLKDDQPVNTA 1869

Query: 1624 KYICTKIHVTNHTEYHG-CLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWPGIDD 1800
                   H     +  G  LQ+      + G Y  VA N  G+  +    H    P +DD
Sbjct: 1870 -------HGNLKIQSSGRVLQIAKALLEDAGRYTCVATNAAGEAHQHTQLHVHEPPSLDD 1922

Query: 1801 GANPNYPDVI 1830
                    V+
Sbjct: 1923 AGKMRNETVV 1932



 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 11/183 (6%)
 Frame = +1

Query: 1258 LTVEEGKSITLSCSVAGDPVPNLYW-DVGNLV-SKHMNETSYTQGSLRI-TNISSDDSGK 1428
            LT  EG  ITL C  +G P P+L W   G+LV +          G  R+  +I+      
Sbjct: 2205 LTAIEGNLITLLCESSGIPPPDLTWKKKGSLVLADSAGRVHILSGGRRLQISIAEKADAG 2264

Query: 1429 QISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSD------HHWCIPFTVKGNPKPALQ 1590
              +CVA N+ G  +   NL V+  P+IT       +          +   V+G P+P + 
Sbjct: 2265 LYTCVASNVAGVAKKEYNLQVYIRPSITNSGGHRPEITVIRGKSISLECEVQGIPQPTVT 2324

Query: 1591 WFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQ--I 1764
            W  +G  L + K +          +    LQL N    + G Y  VA N  G  +K+  +
Sbjct: 2325 WMKDGRPLTKGKGV-------EILDEGRILQLKNVHVSDTGRYVCVAVNVAGMTDKRYDL 2377

Query: 1765 SAH 1773
            S H
Sbjct: 2378 SVH 2380



 Score = 51.2 bits (121), Expect = 4e-06
 Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 7/201 (3%)
 Frame = +1

Query: 1180 NSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW-DVGNLVSK 1356
            +SK+ SL     PN       +    +T+ +G S +++C   G P P++ W   G  ++ 
Sbjct: 3421 DSKHYSLQVFVPPNM---DNAMGTEEITIVKGSSTSMTCFTDGTPAPSMSWLRDGQPLAP 3477

Query: 1357 HMNETSYTQGS-LRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTS 1533
              + T  TQG  L++    ++D+GK  +CVA N  GE      L V   P I   E P  
Sbjct: 3478 DAHLTVSTQGMVLQLIKAETEDTGK-YTCVATNEAGEVSKHFVLKVLEPPHINGSEGPGE 3536

Query: 1534 -----DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPT 1698
                 ++   +     G P P + W  +G    +++ + T        E    L++ +  
Sbjct: 3537 VSVIVNNPLELSCIASGIPAPKISWMKDGRPFLQTEQVQT-------LEGGAILRVSSAQ 3589

Query: 1699 HMNNGDYKLVAKNEYGKDEKQ 1761
              + G Y  +A +  G D+K+
Sbjct: 3590 VEDTGRYTCLASSPAGDDDKE 3610



 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 15/211 (7%)
 Frame = +1

Query: 1243 LAAPNLTVEE-------GKSITLSCSVAGDPVPNLYWDVGNLVSKHMNETSYTQ--GSLR 1395
            + AP L VE+       G +  + C  +G P P + W  G+L  +     S     G L+
Sbjct: 699  IEAPKLVVEQSELLVALGDTTVMECKTSGIPPPQVKWFKGDLELRPSTFLSIDPLVGLLK 758

Query: 1396 ITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTS-----DHHWCIPFT 1560
            I      D+G   +CVA N  G     + L V   P   F++ P+        +  +P  
Sbjct: 759  IQETQDLDAG-DYTCVAINEAGRATGRLTLDVGSPPV--FIQEPSDVAVEIGSNVTLPCY 815

Query: 1561 VKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH-GCLQLDNPTHMNNGDYKLVAKN 1737
            V+G P+P ++W      L+          V+  ++   G L + N    + G Y   A+N
Sbjct: 816  VQGYPEPKIKW----RRLDNMPVFSRPFSVSFISQLRTGALFISNLWASDKGTYICEAEN 871

Query: 1738 EYGKDEKQISAHFMGWPGIDDGANPNYPDVI 1830
            ++GK + Q +    G      G +P+   VI
Sbjct: 872  QFGKIQSQTTVTVTGLVAPLIGISPSMASVI 902



 Score = 50.4 bits (119), Expect = 6e-06
 Identities = 54/228 (23%), Positives = 86/228 (37%), Gaps = 27/228 (11%)
 Frame = +1

Query: 1228 LPSANLAAPNLTVEEGK-----SITLSCSVAGDPVPNLYW--DVGNLVSKHMNETSYTQG 1386
            +   +L  P L+ +E K     S+TL C     P  +L W  D   L S      + +  
Sbjct: 2668 IKKGDLLGPGLSPKEVKIRVNSSLTLECEAYAIPSASLRWYKDGQPLKSDDHVTIAASGH 2727

Query: 1387 SLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTI------------------- 1509
            +L+I      D+G+  +CVA NL GED+   ++ +   P+                    
Sbjct: 2728 TLQIKEAQISDTGRY-TCVASNLAGEDELDFDVNIQVPPSFQKLWEIGNMLDTGRSGEAK 2786

Query: 1510 -TFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQL 1686
               + +P S H           P P L W+ +G  L  S  +               LQ+
Sbjct: 2787 DVIINNPLSLH-----CETNAAPPPTLTWYKDGRPLTSSDRVLI-------LPGGRVLQI 2834

Query: 1687 DNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVI 1830
                  + G Y  VA NE G+D  +   H +  P +  GAN + P+ +
Sbjct: 2835 PRAKVEDAGRYTCVAVNEAGEDSLRYDVHVL-LPPVIKGANSDLPEEV 2881



 Score = 50.1 bits (118), Expect = 8e-06
 Identities = 59/235 (25%), Positives = 92/235 (39%), Gaps = 19/235 (8%)
 Frame = +1

Query: 1150 ETQDLYCLDENS----KNISLANLQIPNCGLPSANLAAPN---LTVEEGKSITLSCSVAG 1308
            +T    C+ EN+    K     N+ +P       ++  PN   L+V     I+L+C V+G
Sbjct: 2936 DTGRYVCVAENTAGSAKKYFNLNVHVP------PSVIGPNHEHLSVVVNHFISLNCEVSG 2989

Query: 1309 DPVPNLYWDVGNLVSKHMNETSYTQG--SLRITNISSDDSGKQISCVAENLVGEDQDSVN 1482
             P P+L W       K         G  +L+I      D G   +C+A N  GE +  V+
Sbjct: 2990 FPPPDLSWLKNEEPIKPNTNVLTVPGGRTLQIIRAKISDGG-DYTCIAINQAGESKKKVS 3048

Query: 1483 LTVHFAP----------TITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYI 1632
            LTVH  P          +I  +   TS    C    V   P P + W  NG ++ +S   
Sbjct: 3049 LTVHVPPSIKDHGSQSLSIVNVREGTSVSLECESNAV---PPPVITWSKNGRMIPDS--- 3102

Query: 1633 CTKIHVTNHTEYHGCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWPGID 1797
             T + +    +    L +      + G Y   A N  G+D+K    +    P I+
Sbjct: 3103 -TNVEILTGGQ---TLHIRRAEVSDTGQYVCRAINVAGRDDKNFHLNVYVPPTIE 3153


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 79,027,512
Number of extensions: 2030179
Number of successful extensions: 8041
Number of sequences better than 1.0e-05: 88
Number of HSP's gapped: 7591
Number of HSP's successfully gapped: 141
Length of query: 832
Length of database: 15,617,559
Length adjustment: 110
Effective length of query: 722
Effective length of database: 12,313,599
Effective search space: 8890418478
Effective search space used: 8890418478
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012420
         (2497 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001007098.1| BDNF/NT-3 growth factors receptor isoform b ...   907   0.0  
Alignment   gi|NP_001018075.1| BDNF/NT-3 growth factors receptor isoform d ...   886   0.0  
Alignment   gi|NP_006171.2| BDNF/NT-3 growth factors receptor isoform a pre...   886   0.0  
Alignment   gi|NP_001018076.1| BDNF/NT-3 growth factors receptor isoform e ...   886   0.0  
Alignment   gi|NP_001018074.1| BDNF/NT-3 growth factors receptor isoform c ...   886   0.0  
Alignment   gi|NP_001230030.1| NT-3 growth factor receptor isoform d precur...   270   6e-72
Alignment   gi|NP_001007157.1| NT-3 growth factor receptor isoform c precur...   267   4e-71
Alignment   gi|NP_002521.2| NT-3 growth factor receptor isoform b precursor...   267   4e-71
Alignment   gi|NP_001012338.1| NT-3 growth factor receptor isoform a precur...   267   4e-71
Alignment   gi|NP_001012331.1| high affinity nerve growth factor receptor i...   222   1e-57

>ref|NP_001007098.1| BDNF/NT-3 growth factors receptor isoform b precursor [Homo sapiens].
          Length = 477

 Score =  907 bits (2343), Expect = 0.0
 Identities = 430/476 (90%), Positives = 441/476 (92%)
 Frame = +1

Query: 643  MSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 822
            MSSW RWHGPAMARLWGFCWL+VGFWRAA ACPTSCKCSASRIWCSDPSPGIVAFPRLEP
Sbjct: 1    MSSWIRWHGPAMARLWGFCWLVVGFWRAAFACPTSCKCSASRIWCSDPSPGIVAFPRLEP 60

Query: 823  STADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHI 1002
            ++ DPENITEI+IANQKRLEIINEDDVEAY GL+NLTIVDSGLK VAHKAFLKNSNLQHI
Sbjct: 61   NSVDPENITEIFIANQKRLEIINEDDVEAYVGLRNLTIVDSGLKFVAHKAFLKNSNLQHI 120

Query: 1003 NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN 1182
            NFTRNKLT LSRKHFRHLDLSELILVGNPF CSCDIMWIKTLQE K S +TQDLYCL+E+
Sbjct: 121  NFTRNKLTSLSRKHFRHLDLSELILVGNPFTCSCDIMWIKTLQEAKSSPDTQDLYCLNES 180

Query: 1183 SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 1362
            SKNI LANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPN+YWDVGNLVSKHM
Sbjct: 181  SKNIPLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNMYWDVGNLVSKHM 240

Query: 1363 NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 1542
            NETS+TQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH
Sbjct: 241  NETSHTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 300

Query: 1543 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 1722
            WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY 
Sbjct: 301  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 360

Query: 1723 LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 1902
            L+AKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST
Sbjct: 361  LIAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 420

Query: 1903 DVADKTGREHLXXXXXXXXXXXXGFCXXXXXXXXXXARHSKFGMKGFVLFHKIPLD 2070
            DV DKTGREHL            GFC          ARHSKFGMKGFVLFHKIPLD
Sbjct: 421  DVTDKTGREHLSVYAVVVIASVVGFCLLVMLFLLKLARHSKFGMKGFVLFHKIPLD 476


>ref|NP_001018075.1| BDNF/NT-3 growth factors receptor isoform d precursor [Homo sapiens].
          Length = 553

 Score =  886 bits (2290), Expect = 0.0
 Identities = 421/470 (89%), Positives = 432/470 (91%)
 Frame = +1

Query: 643  MSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 822
            MSSW RWHGPAMARLWGFCWL+VGFWRAA ACPTSCKCSASRIWCSDPSPGIVAFPRLEP
Sbjct: 1    MSSWIRWHGPAMARLWGFCWLVVGFWRAAFACPTSCKCSASRIWCSDPSPGIVAFPRLEP 60

Query: 823  STADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHI 1002
            ++ DPENITEI+IANQKRLEIINEDDVEAY GL+NLTIVDSGLK VAHKAFLKNSNLQHI
Sbjct: 61   NSVDPENITEIFIANQKRLEIINEDDVEAYVGLRNLTIVDSGLKFVAHKAFLKNSNLQHI 120

Query: 1003 NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN 1182
            NFTRNKLT LSRKHFRHLDLSELILVGNPF CSCDIMWIKTLQE K S +TQDLYCL+E+
Sbjct: 121  NFTRNKLTSLSRKHFRHLDLSELILVGNPFTCSCDIMWIKTLQEAKSSPDTQDLYCLNES 180

Query: 1183 SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 1362
            SKNI LANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPN+YWDVGNLVSKHM
Sbjct: 181  SKNIPLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNMYWDVGNLVSKHM 240

Query: 1363 NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 1542
            NETS+TQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH
Sbjct: 241  NETSHTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 300

Query: 1543 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 1722
            WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY 
Sbjct: 301  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 360

Query: 1723 LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 1902
            L+AKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST
Sbjct: 361  LIAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 420

Query: 1903 DVADKTGREHLXXXXXXXXXXXXGFCXXXXXXXXXXARHSKFGMKGFVLF 2052
            DV DKTGREHL            GFC          ARHSKFGMK F  F
Sbjct: 421  DVTDKTGREHLSVYAVVVIASVVGFCLLVMLFLLKLARHSKFGMKDFSWF 470


>ref|NP_006171.2| BDNF/NT-3 growth factors receptor isoform a precursor [Homo sapiens].
          Length = 838

 Score =  886 bits (2290), Expect = 0.0
 Identities = 421/470 (89%), Positives = 432/470 (91%)
 Frame = +1

Query: 643  MSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 822
            MSSW RWHGPAMARLWGFCWL+VGFWRAA ACPTSCKCSASRIWCSDPSPGIVAFPRLEP
Sbjct: 1    MSSWIRWHGPAMARLWGFCWLVVGFWRAAFACPTSCKCSASRIWCSDPSPGIVAFPRLEP 60

Query: 823  STADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHI 1002
            ++ DPENITEI+IANQKRLEIINEDDVEAY GL+NLTIVDSGLK VAHKAFLKNSNLQHI
Sbjct: 61   NSVDPENITEIFIANQKRLEIINEDDVEAYVGLRNLTIVDSGLKFVAHKAFLKNSNLQHI 120

Query: 1003 NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN 1182
            NFTRNKLT LSRKHFRHLDLSELILVGNPF CSCDIMWIKTLQE K S +TQDLYCL+E+
Sbjct: 121  NFTRNKLTSLSRKHFRHLDLSELILVGNPFTCSCDIMWIKTLQEAKSSPDTQDLYCLNES 180

Query: 1183 SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 1362
            SKNI LANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPN+YWDVGNLVSKHM
Sbjct: 181  SKNIPLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNMYWDVGNLVSKHM 240

Query: 1363 NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 1542
            NETS+TQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH
Sbjct: 241  NETSHTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 300

Query: 1543 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 1722
            WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY 
Sbjct: 301  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 360

Query: 1723 LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 1902
            L+AKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST
Sbjct: 361  LIAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 420

Query: 1903 DVADKTGREHLXXXXXXXXXXXXGFCXXXXXXXXXXARHSKFGMKGFVLF 2052
            DV DKTGREHL            GFC          ARHSKFGMK F  F
Sbjct: 421  DVTDKTGREHLSVYAVVVIASVVGFCLLVMLFLLKLARHSKFGMKDFSWF 470


>ref|NP_001018076.1| BDNF/NT-3 growth factors receptor isoform e precursor [Homo sapiens].
          Length = 537

 Score =  886 bits (2289), Expect = 0.0
 Identities = 420/466 (90%), Positives = 431/466 (92%)
 Frame = +1

Query: 643  MSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 822
            MSSW RWHGPAMARLWGFCWL+VGFWRAA ACPTSCKCSASRIWCSDPSPGIVAFPRLEP
Sbjct: 1    MSSWIRWHGPAMARLWGFCWLVVGFWRAAFACPTSCKCSASRIWCSDPSPGIVAFPRLEP 60

Query: 823  STADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHI 1002
            ++ DPENITEI+IANQKRLEIINEDDVEAY GL+NLTIVDSGLK VAHKAFLKNSNLQHI
Sbjct: 61   NSVDPENITEIFIANQKRLEIINEDDVEAYVGLRNLTIVDSGLKFVAHKAFLKNSNLQHI 120

Query: 1003 NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN 1182
            NFTRNKLT LSRKHFRHLDLSELILVGNPF CSCDIMWIKTLQE K S +TQDLYCL+E+
Sbjct: 121  NFTRNKLTSLSRKHFRHLDLSELILVGNPFTCSCDIMWIKTLQEAKSSPDTQDLYCLNES 180

Query: 1183 SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 1362
            SKNI LANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPN+YWDVGNLVSKHM
Sbjct: 181  SKNIPLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNMYWDVGNLVSKHM 240

Query: 1363 NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 1542
            NETS+TQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH
Sbjct: 241  NETSHTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 300

Query: 1543 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 1722
            WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY 
Sbjct: 301  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 360

Query: 1723 LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 1902
            L+AKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST
Sbjct: 361  LIAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 420

Query: 1903 DVADKTGREHLXXXXXXXXXXXXGFCXXXXXXXXXXARHSKFGMKG 2040
            DV DKTGREHL            GFC          ARHSKFGMKG
Sbjct: 421  DVTDKTGREHLSVYAVVVIASVVGFCLLVMLFLLKLARHSKFGMKG 466


>ref|NP_001018074.1| BDNF/NT-3 growth factors receptor isoform c precursor [Homo sapiens].
          Length = 822

 Score =  886 bits (2289), Expect = 0.0
 Identities = 420/466 (90%), Positives = 431/466 (92%)
 Frame = +1

Query: 643  MSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEP 822
            MSSW RWHGPAMARLWGFCWL+VGFWRAA ACPTSCKCSASRIWCSDPSPGIVAFPRLEP
Sbjct: 1    MSSWIRWHGPAMARLWGFCWLVVGFWRAAFACPTSCKCSASRIWCSDPSPGIVAFPRLEP 60

Query: 823  STADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQHI 1002
            ++ DPENITEI+IANQKRLEIINEDDVEAY GL+NLTIVDSGLK VAHKAFLKNSNLQHI
Sbjct: 61   NSVDPENITEIFIANQKRLEIINEDDVEAYVGLRNLTIVDSGLKFVAHKAFLKNSNLQHI 120

Query: 1003 NFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQETKPSLETQDLYCLDEN 1182
            NFTRNKLT LSRKHFRHLDLSELILVGNPF CSCDIMWIKTLQE K S +TQDLYCL+E+
Sbjct: 121  NFTRNKLTSLSRKHFRHLDLSELILVGNPFTCSCDIMWIKTLQEAKSSPDTQDLYCLNES 180

Query: 1183 SKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVSKHM 1362
            SKNI LANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPN+YWDVGNLVSKHM
Sbjct: 181  SKNIPLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNMYWDVGNLVSKHM 240

Query: 1363 NETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 1542
            NETS+TQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH
Sbjct: 241  NETSHTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHH 300

Query: 1543 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYK 1722
            WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY 
Sbjct: 301  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 360

Query: 1723 LVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 1902
            L+AKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST
Sbjct: 361  LIAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST 420

Query: 1903 DVADKTGREHLXXXXXXXXXXXXGFCXXXXXXXXXXARHSKFGMKG 2040
            DV DKTGREHL            GFC          ARHSKFGMKG
Sbjct: 421  DVTDKTGREHLSVYAVVVIASVVGFCLLVMLFLLKLARHSKFGMKG 466


>ref|NP_001230030.1| NT-3 growth factor receptor isoform d precursor [Homo sapiens].
          Length = 817

 Score =  270 bits (689), Expect = 6e-72
 Identities = 158/415 (38%), Positives = 226/415 (54%), Gaps = 31/415 (7%)
 Frame = +1

Query: 670  PAMARLW-----GFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEPS--- 825
            PA    W     G  WL   +  + LACP +C CS + I C  P  G + FP LE     
Sbjct: 7    PAKCSFWRIFLLGSVWL--DYVGSVLACPANCVCSKTEINCRRPDDGNL-FPLLEGQDSG 63

Query: 826  ----------TADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAF 975
                      T    NIT I+I N + L  +N  D+E Y GL+ LTI +SGL+S+  +AF
Sbjct: 64   NSNGNASINITDISRNITSIHIENWRSLHTLNAVDMELYTGLQKLTIKNSGLRSIQPRAF 123

Query: 976  LKNSNLQHINFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQET-KPSLE 1152
             KN +L++IN + N+LT LS + F+ L L EL L  N F CSCDI W++  QE  +  L 
Sbjct: 124  AKNPHLRYINLSSNRLTTLSWQLFQTLSLRELQLEQNFFNCSCDIRWMQLWQEQGEAKLN 183

Query: 1153 TQDLYCLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW 1332
            +Q+LYC++ +   + L  + I  C LP  +++  NLTV EG +  ++C+ +G P+P++ W
Sbjct: 184  SQNLYCINADGSQLPLFRMNISQCDLPEISVSHVNLTVREGDNAVITCNGSGSPLPDVDW 243

Query: 1333 DVGNLVS-----KHMNETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHF 1497
             V  L S      ++N T+    +L + N++S+D+G  ++C+AEN+VG    SV LTV++
Sbjct: 244  IVTGLQSINTHQTNLNWTNVHAINLTLVNVTSEDNGFTLTCIAENVVGMSNASVALTVYY 303

Query: 1498 APTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH-- 1671
             P +  LE P      CI F V+GNP P L W +NG  L ESK I        H EY+  
Sbjct: 304  PPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKII--------HVEYYQE 355

Query: 1672 -----GCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWPGIDDGANPNYP 1821
                 GCL  + PTH NNG+Y L+AKN  G   + I+ HF+  P   D  +P  P
Sbjct: 356  GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPP 410


>ref|NP_001007157.1| NT-3 growth factor receptor isoform c precursor [Homo sapiens].
          Length = 612

 Score =  267 bits (682), Expect = 4e-71
 Identities = 155/404 (38%), Positives = 222/404 (54%), Gaps = 31/404 (7%)
 Frame = +1

Query: 670  PAMARLW-----GFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEPS--- 825
            PA    W     G  WL   +  + LACP +C CS + I C  P  G + FP LE     
Sbjct: 7    PAKCSFWRIFLLGSVWL--DYVGSVLACPANCVCSKTEINCRRPDDGNL-FPLLEGQDSG 63

Query: 826  ----------TADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAF 975
                      T    NIT I+I N + L  +N  D+E Y GL+ LTI +SGL+S+  +AF
Sbjct: 64   NSNGNASINITDISRNITSIHIENWRSLHTLNAVDMELYTGLQKLTIKNSGLRSIQPRAF 123

Query: 976  LKNSNLQHINFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQET-KPSLE 1152
             KN +L++IN + N+LT LS + F+ L L EL L  N F CSCDI W++  QE  +  L 
Sbjct: 124  AKNPHLRYINLSSNRLTTLSWQLFQTLSLRELQLEQNFFNCSCDIRWMQLWQEQGEAKLN 183

Query: 1153 TQDLYCLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW 1332
            +Q+LYC++ +   + L  + I  C LP  +++  NLTV EG +  ++C+ +G P+P++ W
Sbjct: 184  SQNLYCINADGSQLPLFRMNISQCDLPEISVSHVNLTVREGDNAVITCNGSGSPLPDVDW 243

Query: 1333 DVGNLVS-----KHMNETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHF 1497
             V  L S      ++N T+    +L + N++S+D+G  ++C+AEN+VG    SV LTV++
Sbjct: 244  IVTGLQSINTHQTNLNWTNVHAINLTLVNVTSEDNGFTLTCIAENVVGMSNASVALTVYY 303

Query: 1498 APTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH-- 1671
             P +  LE P      CI F V+GNP P L W +NG  L ESK I        H EY+  
Sbjct: 304  PPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKII--------HVEYYQE 355

Query: 1672 -----GCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWP 1788
                 GCL  + PTH NNG+Y L+AKN  G   + I+ HF+  P
Sbjct: 356  GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP 399


>ref|NP_002521.2| NT-3 growth factor receptor isoform b precursor [Homo sapiens].
          Length = 825

 Score =  267 bits (682), Expect = 4e-71
 Identities = 155/404 (38%), Positives = 222/404 (54%), Gaps = 31/404 (7%)
 Frame = +1

Query: 670  PAMARLW-----GFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEPS--- 825
            PA    W     G  WL   +  + LACP +C CS + I C  P  G + FP LE     
Sbjct: 7    PAKCSFWRIFLLGSVWL--DYVGSVLACPANCVCSKTEINCRRPDDGNL-FPLLEGQDSG 63

Query: 826  ----------TADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAF 975
                      T    NIT I+I N + L  +N  D+E Y GL+ LTI +SGL+S+  +AF
Sbjct: 64   NSNGNASINITDISRNITSIHIENWRSLHTLNAVDMELYTGLQKLTIKNSGLRSIQPRAF 123

Query: 976  LKNSNLQHINFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQET-KPSLE 1152
             KN +L++IN + N+LT LS + F+ L L EL L  N F CSCDI W++  QE  +  L 
Sbjct: 124  AKNPHLRYINLSSNRLTTLSWQLFQTLSLRELQLEQNFFNCSCDIRWMQLWQEQGEAKLN 183

Query: 1153 TQDLYCLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW 1332
            +Q+LYC++ +   + L  + I  C LP  +++  NLTV EG +  ++C+ +G P+P++ W
Sbjct: 184  SQNLYCINADGSQLPLFRMNISQCDLPEISVSHVNLTVREGDNAVITCNGSGSPLPDVDW 243

Query: 1333 DVGNLVS-----KHMNETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHF 1497
             V  L S      ++N T+    +L + N++S+D+G  ++C+AEN+VG    SV LTV++
Sbjct: 244  IVTGLQSINTHQTNLNWTNVHAINLTLVNVTSEDNGFTLTCIAENVVGMSNASVALTVYY 303

Query: 1498 APTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH-- 1671
             P +  LE P      CI F V+GNP P L W +NG  L ESK I        H EY+  
Sbjct: 304  PPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKII--------HVEYYQE 355

Query: 1672 -----GCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWP 1788
                 GCL  + PTH NNG+Y L+AKN  G   + I+ HF+  P
Sbjct: 356  GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP 399


>ref|NP_001012338.1| NT-3 growth factor receptor isoform a precursor [Homo sapiens].
          Length = 839

 Score =  267 bits (682), Expect = 4e-71
 Identities = 155/404 (38%), Positives = 222/404 (54%), Gaps = 31/404 (7%)
 Frame = +1

Query: 670  PAMARLW-----GFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRLEPS--- 825
            PA    W     G  WL   +  + LACP +C CS + I C  P  G + FP LE     
Sbjct: 7    PAKCSFWRIFLLGSVWL--DYVGSVLACPANCVCSKTEINCRRPDDGNL-FPLLEGQDSG 63

Query: 826  ----------TADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAF 975
                      T    NIT I+I N + L  +N  D+E Y GL+ LTI +SGL+S+  +AF
Sbjct: 64   NSNGNASINITDISRNITSIHIENWRSLHTLNAVDMELYTGLQKLTIKNSGLRSIQPRAF 123

Query: 976  LKNSNLQHINFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQET-KPSLE 1152
             KN +L++IN + N+LT LS + F+ L L EL L  N F CSCDI W++  QE  +  L 
Sbjct: 124  AKNPHLRYINLSSNRLTTLSWQLFQTLSLRELQLEQNFFNCSCDIRWMQLWQEQGEAKLN 183

Query: 1153 TQDLYCLDENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYW 1332
            +Q+LYC++ +   + L  + I  C LP  +++  NLTV EG +  ++C+ +G P+P++ W
Sbjct: 184  SQNLYCINADGSQLPLFRMNISQCDLPEISVSHVNLTVREGDNAVITCNGSGSPLPDVDW 243

Query: 1333 DVGNLVS-----KHMNETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHF 1497
             V  L S      ++N T+    +L + N++S+D+G  ++C+AEN+VG    SV LTV++
Sbjct: 244  IVTGLQSINTHQTNLNWTNVHAINLTLVNVTSEDNGFTLTCIAENVVGMSNASVALTVYY 303

Query: 1498 APTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH-- 1671
             P +  LE P      CI F V+GNP P L W +NG  L ESK I        H EY+  
Sbjct: 304  PPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKII--------HVEYYQE 355

Query: 1672 -----GCLQLDNPTHMNNGDYKLVAKNEYGKDEKQISAHFMGWP 1788
                 GCL  + PTH NNG+Y L+AKN  G   + I+ HF+  P
Sbjct: 356  GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP 399


>ref|NP_001012331.1| high affinity nerve growth factor receptor isoform 1 [Homo sapiens].
          Length = 790

 Score =  222 bits (566), Expect = 1e-57
 Identities = 146/425 (34%), Positives = 210/425 (49%), Gaps = 5/425 (1%)
 Frame = +1

Query: 637  LGMSSWTRWHGPAMARLWGFCWLIVGFWRAALACPTSCKCSASRIWCSDPSPGIVAFPRL 816
            LG  SW    G  +A      WLI+    AA      C   +S + C+       A   L
Sbjct: 10   LGWHSWAAGPGSLLA------WLILASAGAAPCPDACCPHGSSGLRCTRDG----ALDSL 59

Query: 817  EPSTADPENITEIYIANQKRLEIINEDDVEAYAGLKNLTIVDSGLKSVAHKAFLKNSNLQ 996
                   EN+TE+YI NQ+ L+ +   D+     L+NLTIV SGL+ VA  AF     L 
Sbjct: 60   H-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 118

Query: 997  HINFTRNKLTILSRKHFRHLDLSELILVGNPFRCSCDIMWIKTLQET-KPSLETQDLYCL 1173
             +N + N L  LS K  + L L EL+L GNP  CSC + W++  +E     +  Q L C 
Sbjct: 119  RLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCH 178

Query: 1174 DENSKNISLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNLYWDVGNLVS 1353
             +      LA++   +CG+P+  +  PN +V+ G  + L C V G  +    W +  L  
Sbjct: 179  GQG----PLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQ 234

Query: 1354 KH--MNETSYTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESP 1527
                M         L + N++SD + K ++C AEN VG  + SV + V F P    L + 
Sbjct: 235  SATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF-PASVQLHTA 293

Query: 1528 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKI--HVTNHTEYHGCLQLDNPTH 1701
               HHWCIPF+V G P P+L+W +NG++LNE+ +I T+      N T  HGCL+L+ PTH
Sbjct: 294  VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH 353

Query: 1702 MNNGDYKLVAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNR 1881
            +NNG+Y L+A N +G+    I A FM     D+    N  D I +   T+    GD   +
Sbjct: 354  VNNGNYTLLAANPFGQASASIMAAFM-----DNPFEFNPEDPIPDTNSTS----GDPVEK 404

Query: 1882 SNEIP 1896
             +E P
Sbjct: 405  KDETP 409


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 92,953,040
Number of extensions: 2411193
Number of successful extensions: 10068
Number of sequences better than 1.0e-05: 113
Number of HSP's gapped: 9489
Number of HSP's successfully gapped: 181
Length of query: 832
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 721
Effective length of database: 14,638,160
Effective search space: 10554113360
Effective search space used: 10554113360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012420
         (2497 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr10                                                        1126   0.0  

>Sscrofa_Chr10 
||          Length = 79102373

 Score = 1126 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Minus

                                                                            
Query: 287      gccccgaggtgcgtcccggatcccagtgcgcgtctaggaaggagcctgcgtcccagagcg 346
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34558768 gccccgaggtgcgtcccggatcccagtgcgcgtctaggaaggagcctgcgtcccagagcg 34558709

                                                                            
Query: 347      tcccaggagcgcggccgcccggtgctcggctccccggccatgcagcggcggccgaggcgc 406
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34558708 tcccaggagcgcggccgcccggtgctcggctccccggccatgcagcggcggccgaggcgc 34558649

                                                                            
Query: 407      agctcccagagacggtagcgccccctgtgaggaggcccgaaatgcccctgccactgtgaa 466
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34558648 agctcccagagacggtagcgccccctgtgaggaggcccgaaatgcccctgccactgtgaa 34558589

                                                                            
Query: 467      cccgccaggacgcgctcagctccggacacgctcggctctgcgcgcctgcgaggagcaccg 526
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34558588 cccgccaggacgcgctcagctccggacacgctcggctctgcgcgcctgcgaggagcaccg 34558529

                                                                            
Query: 527      agtggagagagagcggcaggcgcagcaaaggccgcccagcaccggcaggggaggccggcc 586
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34558528 agtggagagagagcggcaggcgcagcaaaggccgcccagcaccggcaggggaggccggcc 34558469

                                                                            
Query: 587      ggtgcggttcagggacacgtactcagtctgactcgagctggcactggtggctaggaatgt 646
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34558468 ggtgcggttcagggacacgtactcagtctgactcgagctggcactggtggctaggaatgt 34558409

                                                                            
Query: 647      cgtcctggacgaggtggcatgggcctgccatggcgcggctctggggcttctgctggctga 706
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34558408 cgtcctggacgaggtggcatgggcctgccatggcgcggctctggggcttctgctggctga 34558349

                                                                            
Query: 707      ttgtgggcttctggagggccgctcttgcctgtcccacatcctgcaaatgcagcgcctctc 766
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34558348 ttgtgggcttctggagggccgctcttgcctgtcccacatcctgcaaatgcagcgcctctc 34558289

                                                                            
Query: 767      ggatctggtgcagcgacccttctcctggcatcgtggcattcccgaggttggagccttcca 826
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34558288 ggatctggtgcagcgacccttctcctggcatcgtggcattcccgaggttggagccttcca 34558229

                                            
Query: 827      ctgcagaccctgagaacatcaccgaaat 854
                ||||||||||||||||||||||||||||
Sbjct: 34558228 ctgcagaccctgagaacatcaccgaaat 34558201



 Score =  775 bits (391), Expect = 0.0
 Identities = 433/448 (96%)
 Strand = Plus / Plus

                                                                            
Query: 2037     aggttttgttttgtttcataagatcccactggatgggtaactgaaataaaggaaaagaca 2096
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34185289 aggttttgttttgtttcataagatcccactggatgggtaactgaaataaaggaaaagaca 34185348

                                                                            
Query: 2097     gagaagggggctgtggtgcttgttggttgatgctgccttgtaagctggactcttggggct 2156
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34185349 gagaagggggctgtggtgcttgttggttgatgctgccttgtaagctggactcttggggct 34185408

                                                                            
Query: 2157     ggcgtggtttctcccgcccgggacaggccatttctctggggttttctgctagaggtgggt 2216
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34185409 ggcgtggtttctcccgcccgggacaggccatttctctggggttttctgctagaggtgggt 34185468

                                                                            
Query: 2217     ggtgtttgcaggaggtactgctcgaagcctgcaggtgctgtgagctgtgaacaggggcca 2276
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34185469 ggtgtttgcaggaggtactgctcgaagcctgcaggtgctgtgagctgtgaacaggggcca 34185528

                                                                            
Query: 2277     ccaaggcagactcagctcacaggcagctaagcagaaactcaagaaaacattttaatactt 2336
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34185529 ccaaggcagactcagctcacaggcagctaagcagaaactcaagaaaacattttaatactt 34185588

                                                                            
Query: 2337     ctcttttgatcttacaatcgttcacatgcaaagttgaaatgaaatgcccccgggatttgt 2396
                |||||||||||||||||||||||||||||||||||||||||||||||| ||||  | |||
Sbjct: 34185589 ctcttttgatcttacaatcgttcacatgcaaagttgaaatgaaatgccaccggattgtgt 34185648

                                                                            
Query: 2397     ttctcttccgaaaagtgtacagtttgaccatcctggaaatnatgtgcttttcanntgttt 2456
                ||||||||||||||||||||||||||||||||||||||||    |||||||||    |||
Sbjct: 34185649 ttctcttccgaaaagtgtacagtttgaccatcctggaaatatgttgcttttcattgtttt 34185708

                                            
Query: 2457     ctggggattaaaggggaactgcaaagtt 2484
                ||| | |||||||| |||||||||||||
Sbjct: 34185709 ctgtgtattaaaggtgaactgcaaagtt 34185736



 Score =  613 bits (309), Expect = e-172
 Identities = 309/309 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1496     ttgctccaactatcacatttctcgaatctccaacctcagaccaccactggtgcattccat 1555
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34284642 ttgctccaactatcacatttctcgaatctccaacctcagaccaccactggtgcattccat 34284701

                                                                            
Query: 1556     tcactgtgaaaggcaaccccaaaccagcgcttcagtggttctataacggggcaattttga 1615
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34284702 tcactgtgaaaggcaaccccaaaccagcgcttcagtggttctataacggggcaattttga 34284761

                                                                            
Query: 1616     atgagtccaaatacatctgtactaaaatccatgttaccaatcacacggagtaccacggct 1675
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34284762 atgagtccaaatacatctgtactaaaatccatgttaccaatcacacggagtaccacggct 34284821

                                                                            
Query: 1676     gcctccagctggataatcctactcacatgaacaatggggactacaagttagtggccaaga 1735
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34284822 gcctccagctggataatcctactcacatgaacaatggggactacaagttagtggccaaga 34284881

                                                                            
Query: 1736     atgagtatgggaaggatgagaaacagatttctgctcacttcatgggctggcctggaatcg 1795
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34284882 atgagtatgggaaggatgagaaacagatttctgctcacttcatgggctggcctggaatcg 34284941

                         
Query: 1796     atgacggtg 1804
                |||||||||
Sbjct: 34284942 atgacggtg 34284950



 Score =  311 bits (157), Expect = 1e-81
 Identities = 157/157 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1071     gatcctggtgggcaatccatttagatgctcctgtgacattatgtggatcaagactcttca 1130
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34263244 gatcctggtgggcaatccatttagatgctcctgtgacattatgtggatcaagactcttca 34263303

                                                                            
Query: 1131     ggaaactaagcccagtctagaaactcaggatttgtactgcctggatgaaaacagcaagaa 1190
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34263304 ggaaactaagcccagtctagaaactcaggatttgtactgcctggatgaaaacagcaagaa 34263363

                                                     
Query: 1191     tatttccctggcaaacctgcagatacccaattgtggt 1227
                |||||||||||||||||||||||||||||||||||||
Sbjct: 34263364 tatttccctggcaaacctgcagatacccaattgtggt 34263400



 Score =  266 bits (134), Expect = 5e-68
 Identities = 137/138 (99%)
 Strand = Plus / Plus

                                                                            
Query: 1225     ggtttgccgtcagcaaatttggctgccccaaacctcaccgtggaggagggaaagtctatc 1284
                ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 34280931 ggtttgccgtcagcaaatttggccgccccaaacctcaccgtggaggagggaaagtctatc 34280990

                                                                            
Query: 1285     acgctatcttgtagtgttgcaggtgatccagttccgaatttgtactgggatgtcggtaat 1344
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34280991 acgctatcttgtagtgttgcaggtgatccagttccgaatttgtactgggatgtcggtaat 34281050

                                  
Query: 1345     ctggtttccaagcacatg 1362
                ||||||||||||||||||
Sbjct: 34281051 ctggtttccaagcacatg 34281068



 Score =  266 bits (134), Expect = 5e-68
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1362     gaatgaaacaagctacacacagggctccttaaggataactaacatttcatctgatgacag 1421
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34281817 gaatgaaacaagctacacacagggctccttaaggataactaacatttcatctgatgacag 34281876

                                                                            
Query: 1422     tggaaagcaaatctcttgtgtggcagaaaatctcgtaggagaagatcaagattctgtcaa 1481
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34281877 tggaaagcaaatctcttgtgtggcagaaaatctcgtaggagaagatcaagattctgtcaa 34281936

                              
Query: 1482     cctcactgtacatt 1495
                ||||||||||||||
Sbjct: 34281937 cctcactgtacatt 34281950



 Score =  260 bits (131), Expect = 3e-66
 Identities = 131/131 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        gcttttgtctggagggtgttatgggtttgtgtgtgtatgagcgtgtgtgtttttggattt 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34559536 gcttttgtctggagggtgttatgggtttgtgtgtgtatgagcgtgtgtgtttttggattt 34559477

                                                                            
Query: 61       cagactaattttctggagtttctgcccctgctctgcgtcagccctcacgtcacttcgcca 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34559476 cagactaattttctggagtttctgcccctgctctgcgtcagccctcacgtcacttcgcca 34559417

                           
Query: 121      gcagtagcaga 131
                |||||||||||
Sbjct: 34559416 gcagtagcaga 34559406



 Score =  250 bits (126), Expect = 3e-63
 Identities = 126/126 (100%)
 Strand = Plus / Minus

                                                                            
Query: 162      tcccggaattgggttggagcaggagcctcgctcgctccttagctcgcgctctccgagctc 221
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34559378 tcccggaattgggttggagcaggagcctcgctcgctccttagctcgcgctctccgagctc 34559319

                                                                            
Query: 222      cgtgcccagcggcaggaggagcctggacccaggcgccgctggcgggcggtaggcgccgga 281
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34559318 cgtgcccagcggcaggaggagcctggacccaggcgccgctggcgggcggtaggcgccgga 34559259

                      
Query: 282      gcccgg 287
                ||||||
Sbjct: 34559258 gcccgg 34559253



 Score =  210 bits (106), Expect = 3e-51
 Identities = 106/106 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1835     aagattatgggactgcagcgaatgatattggggacaccaccaacagaagcaatgaaatcc 1894
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34303156 aagattatgggactgcagcgaatgatattggggacaccaccaacagaagcaatgaaatcc 34303215

                                                              
Query: 1895     cttccacagatgttgctgacaaaactggtcgagaacatctctcggt 1940
                ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34303216 cttccacagatgttgctgacaaaactggtcgagaacatctctcggt 34303261



 Score =  204 bits (103), Expect = 2e-49
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1938     ggtctacgctgtggtagtaattgcatcggtagtggggttttgtctgctggtaatgctgtt 1997
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34313440 ggtctacgctgtggtagtaattgcatcggtagtggggttttgtctgctggtaatgctgtt 34313499

                                                           
Query: 1998     tctgctgaagttggcaagacactccaagtttggcatgaaaggt 2040
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34313500 tctgctgaagttggcaagacactccaagtttggcatgaaaggt 34313542



 Score =  151 bits (76), Expect = 2e-33
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                            
Query: 855      ttatattgcaaatcagaaaagattagaaatcatcaatgaagatgatgttgaagcttatgc 914
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34254474 ttatattgcaaatcagaaaagattagaaatcatcaatgaagatgatgttgaagcttatgc 34254533

                                
Query: 915      aggactgaaaaatctg 930
                ||||||||||||||||
Sbjct: 34254534 aggactgaaaaatctg 34254549



 Score =  151 bits (76), Expect = 2e-33
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                            
Query: 855      ttatattgcaaatcagaaaagattagaaatcatcaatgaagatgatgttgaagcttatgc 914
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56844070 ttatattgcaaatcagaaaagattagaaatcatcaatgaagatgatgttgaagcttatgc 56844129

                                
Query: 915      aggactgaaaaatctg 930
                ||||||||||||||||
Sbjct: 56844130 aggactgaaaaatctg 56844145



 Score =  143 bits (72), Expect = 5e-31
 Identities = 72/72 (100%)
 Strand = Plus / Plus

                                                                            
Query: 930      gaccattgtggattccggattaaaatctgtggctcataaagcatttctgaaaaatagcaa 989
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34254664 gaccattgtggattccggattaaaatctgtggctcataaagcatttctgaaaaatagcaa 34254723

                            
Query: 990      cttacagcacat 1001
                ||||||||||||
Sbjct: 34254724 cttacagcacat 34254735



 Score =  143 bits (72), Expect = 5e-31
 Identities = 72/72 (100%)
 Strand = Plus / Plus

                                                                            
Query: 930      gaccattgtggattccggattaaaatctgtggctcataaagcatttctgaaaaatagcaa 989
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56844260 gaccattgtggattccggattaaaatctgtggctcataaagcatttctgaaaaatagcaa 56844319

                            
Query: 990      cttacagcacat 1001
                ||||||||||||
Sbjct: 56844320 cttacagcacat 56844331



 Score =  139 bits (70), Expect = 8e-30
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1002     caattttacccgaaataaactgacgattttgtctaggaaacattttcgtcaccttgattt 1061
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34260254 caattttacccgaaataaactgacgattttgtctaggaaacattttcgtcaccttgattt 34260313

                          
Query: 1062     gtctgagctg 1071
                ||||||||||
Sbjct: 34260314 gtctgagctg 34260323



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                     
Query: 1801     ggtgcaaacccaaattatcctgatgtaatttatgaag 1837
                |||||||||||||||||||||||||||||||||||||
Sbjct: 34300294 ggtgcaaacccaaattatcctgatgtaatttatgaag 34300330


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 73,930,826
Number of extensions: 886
Number of successful extensions: 886
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 885
Number of HSP's successfully gapped: 16
Length of query: 2497
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2475
Effective length of database: 2,808,408,574
Effective search space: 6950811220650
Effective search space used: 6950811220650
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)