Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012428
(1011 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540234.2| PREDICTED: similar to sepiapterin reductase (7,... 383 e-106
>ref|XP_540234.2| PREDICTED: similar to sepiapterin reductase
(7,8-dihydrobiopterin:NADP+ oxidoreductase) [Canis
familiaris].
Length = 267
Score = 383 bits (984), Expect = e-106
Identities = 193/266 (72%), Positives = 222/266 (83%)
Frame = +1
Query: 64 MEHGVGKVGGLGRALCVVTGASRGFGRTLAQLLAPLLSPGSVLVLTARNDEALRHLEAEL 243
M+ G G+ GGLGRA+CV+TGASRGFGR LA+LLA LL+PGSVLVL+ARN EALR L+AEL
Sbjct: 1 MQGGSGEEGGLGRAVCVLTGASRGFGRALARLLARLLAPGSVLVLSARNIEALRQLQAEL 60
Query: 244 GSERPDLRVVRVPADXXXXXXXXXXXXXXXXXPRPEGLQRVLLFNNAASLGDVSKSFVDL 423
+ RP LRV+ VPAD RPEGLQRVL NN +LGDVSK FVDL
Sbjct: 61 DAGRPGLRVLSVPADLGVEADLQQLLGALRELSRPEGLQRVLFINNGGTLGDVSKGFVDL 120
Query: 424 TDSAEVNSYWALNLTSMLCLTSSFLKAFPDSPGLSRMVVNISSICAVKPFKGWALYCAGK 603
DSAEVN+YWA+NLTSMLCLT++ LKAFPDSPGLSR VVNISS+CA++PFKGW LYCAGK
Sbjct: 121 GDSAEVNNYWAVNLTSMLCLTTTILKAFPDSPGLSRTVVNISSLCALQPFKGWGLYCAGK 180
Query: 604 AARDMIYQVLAAEDPSLRVLSYAPGPLDTDMQQIAREASVDPDLRKRLQELKRKGELVDC 783
AARDM++QVLAAE+PS+RVLSYAPGPLDTDMQQ+ARE S+DPDLR++LQ LK KGELVDC
Sbjct: 181 AARDMMFQVLAAEEPSVRVLSYAPGPLDTDMQQLARETSMDPDLREQLQNLKTKGELVDC 240
Query: 784 KVSAQKLLNLLQKDEFKSGAHVDFYN 861
+SAQKLL+LLQ D FKSGAHVDFY+
Sbjct: 241 NMSAQKLLSLLQMDTFKSGAHVDFYD 266
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,493,465
Number of extensions: 1096225
Number of successful extensions: 3926
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3915
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 234
Effective length of database: 15,440,896
Effective search space: 3613169664
Effective search space used: 3613169664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012428
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012428
(1011 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069471.1| sepiapterin reductase [Bos taurus]. 406 e-113
>ref|NP_001069471.1| sepiapterin reductase [Bos taurus].
Length = 267
Score = 406 bits (1043), Expect = e-113
Identities = 203/266 (76%), Positives = 227/266 (85%)
Frame = +1
Query: 64 MEHGVGKVGGLGRALCVVTGASRGFGRTLAQLLAPLLSPGSVLVLTARNDEALRHLEAEL 243
ME VGKVGGLGR LCV+TGASRGFGRTLAQ+LAPL+SP SVLVL+ARNDEALR LE EL
Sbjct: 1 MEGSVGKVGGLGRTLCVLTGASRGFGRTLAQVLAPLMSPRSVLVLSARNDEALRQLETEL 60
Query: 244 GSERPDLRVVRVPADXXXXXXXXXXXXXXXXXPRPEGLQRVLLFNNAASLGDVSKSFVDL 423
G+E P LR+VRVPAD PRPEGLQRVLL NNA +LGDVSK +VDL
Sbjct: 61 GAEWPGLRIVRVPADLGAETGLQQLVGALCDLPRPEGLQRVLLINNAGTLGDVSKRWVDL 120
Query: 424 TDSAEVNSYWALNLTSMLCLTSSFLKAFPDSPGLSRMVVNISSICAVKPFKGWALYCAGK 603
TD EVN+YW LNLTS LCLTSS L+AFPDSPGLSR VVNISSICA++PFKGW LYCAGK
Sbjct: 121 TDPTEVNNYWTLNLTSTLCLTSSILQAFPDSPGLSRTVVNISSICALQPFKGWGLYCAGK 180
Query: 604 AARDMIYQVLAAEDPSLRVLSYAPGPLDTDMQQIAREASVDPDLRKRLQELKRKGELVDC 783
AAR+M++QVLAAE+PS+RVLSY PGPLDTDMQQ+ARE SVDPDLRK LQELKRKGELVDC
Sbjct: 181 AARNMMFQVLAAEEPSVRVLSYGPGPLDTDMQQLARETSVDPDLRKSLQELKRKGELVDC 240
Query: 784 KVSAQKLLNLLQKDEFKSGAHVDFYN 861
K+SAQKLL+LLQ D+F+SGAH+DFY+
Sbjct: 241 KISAQKLLSLLQNDKFESGAHIDFYD 266
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,061,510
Number of extensions: 1077594
Number of successful extensions: 3848
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3838
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,273,310
Effective search space: 3339954540
Effective search space used: 3339954540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012428
(1011 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125080.1| PREDICTED: sepiapterin reductase-like [Sus s... 484 e-137
>ref|XP_003125080.1| PREDICTED: sepiapterin reductase-like [Sus scrofa].
Length = 266
Score = 484 bits (1246), Expect = e-137
Identities = 249/266 (93%), Positives = 249/266 (93%)
Frame = +1
Query: 64 MEHGVGKVGGLGRALCVVTGASRGFGRTLAQLLAPLLSPGSVLVLTARNDEALRHLEAEL 243
MEHGVGKVGGLGRALCVVTGASRGFGRTLAQLLAPLLSPGSVLVLTARNDEALRHLEAEL
Sbjct: 1 MEHGVGKVGGLGRALCVVTGASRGFGRTLAQLLAPLLSPGSVLVLTARNDEALRHLEAEL 60
Query: 244 GSERPDLRVVRVPADXXXXXXXXXXXXXXXXXPRPEGLQRVLLFNNAASLGDVSKSFVDL 423
GSERPDLRVVRVPAD PRPEGLQRVLLFNNAASLGDVSKSFVDL
Sbjct: 61 GSERPDLRVVRVPADLGAEAGLQQLLGALRELPRPEGLQRVLLFNNAASLGDVSKSFVDL 120
Query: 424 TDSAEVNSYWALNLTSMLCLTSSFLKAFPDSPGLSRMVVNISSICAVKPFKGWALYCAGK 603
TDSAEVNSYWALNLTSMLCLTSSFLKAFPDSPGLSRMVVNISSICAVKPFKGWALYCAGK
Sbjct: 121 TDSAEVNSYWALNLTSMLCLTSSFLKAFPDSPGLSRMVVNISSICAVKPFKGWALYCAGK 180
Query: 604 AARDMIYQVLAAEDPSLRVLSYAPGPLDTDMQQIAREASVDPDLRKRLQELKRKGELVDC 783
AARDMIYQVLAAEDPSLRVLSYAPGPLDTDMQQIAREASVDPDLRKRLQELKRKGELVDC
Sbjct: 181 AARDMIYQVLAAEDPSLRVLSYAPGPLDTDMQQIAREASVDPDLRKRLQELKRKGELVDC 240
Query: 784 KVSAQKLLNLLQKDEFKSGAHVDFYN 861
KVSAQKLLNLLQKDEFKSGAHVDFYN
Sbjct: 241 KVSAQKLLNLLQKDEFKSGAHVDFYN 266
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,199,250
Number of extensions: 692894
Number of successful extensions: 2487
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2478
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 237
Effective length of database: 8,854,232
Effective search space: 2098452984
Effective search space used: 2098452984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012428
(1011 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035597.2| sepiapterin reductase [Mus musculus]. 351 4e-97
>ref|NP_035597.2| sepiapterin reductase [Mus musculus].
Length = 262
Score = 351 bits (901), Expect = 4e-97
Identities = 175/260 (67%), Positives = 209/260 (80%)
Frame = +1
Query: 82 KVGGLGRALCVVTGASRGFGRTLAQLLAPLLSPGSVLVLTARNDEALRHLEAELGSERPD 261
+ GGLG A+CV+TGASRGFGR LA LA LLSPGSV++++AR++ LR L+ ELG+++PD
Sbjct: 2 EAGGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPD 61
Query: 262 LRVVRVPADXXXXXXXXXXXXXXXXXPRPEGLQRVLLFNNAASLGDVSKSFVDLTDSAEV 441
L+VV AD PRPEGLQR+LL NNAA+LGDVSK F+++ D AEV
Sbjct: 62 LKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEV 121
Query: 442 NSYWALNLTSMLCLTSSFLKAFPDSPGLSRMVVNISSICAVKPFKGWALYCAGKAARDMI 621
N+YWALNLTSMLCLTS L AF DSPGLS+ VVNISS+CA++P+KGW LYCAGKAARDM+
Sbjct: 122 NNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDML 181
Query: 622 YQVLAAEDPSLRVLSYAPGPLDTDMQQIAREASVDPDLRKRLQELKRKGELVDCKVSAQK 801
YQVLAAE+PS+RVLSYAPGPLD DMQQ+ARE S DP+LR +LQ+LK G LVDC SAQK
Sbjct: 182 YQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQK 241
Query: 802 LLNLLQKDEFKSGAHVDFYN 861
LL LLQKD F+SGAHVDFY+
Sbjct: 242 LLGLLQKDTFQSGAHVDFYD 261
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,589,586
Number of extensions: 898972
Number of successful extensions: 3035
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3032
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 235
Effective length of database: 12,553,887
Effective search space: 2950163445
Effective search space used: 2950163445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012428
(1011 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003115.1| sepiapterin reductase [Homo sapiens]. 400 e-111
>ref|NP_003115.1| sepiapterin reductase [Homo sapiens].
Length = 261
Score = 400 bits (1028), Expect = e-111
Identities = 200/258 (77%), Positives = 226/258 (87%)
Frame = +1
Query: 88 GGLGRALCVVTGASRGFGRTLAQLLAPLLSPGSVLVLTARNDEALRHLEAELGSERPDLR 267
GGLGRA+C++TGASRGFGRTLA LLA LLSPGSVLVL+ARNDEALR LEAELG+ER LR
Sbjct: 3 GGLGRAVCLLTGASRGFGRTLAPLLASLLSPGSVLVLSARNDEALRQLEAELGAERSGLR 62
Query: 268 VVRVPADXXXXXXXXXXXXXXXXXPRPEGLQRVLLFNNAASLGDVSKSFVDLTDSAEVNS 447
VVRVPAD PRP+GLQR+LL NNA SLGDVSK FVDL+DS +VN+
Sbjct: 63 VVRVPADLGAEAGLQQLLGALRELPRPKGLQRLLLINNAGSLGDVSKGFVDLSDSTQVNN 122
Query: 448 YWALNLTSMLCLTSSFLKAFPDSPGLSRMVVNISSICAVKPFKGWALYCAGKAARDMIYQ 627
YWALNLTSMLCLTSS LKAFPDSPGL+R VVNISS+CA++PFKGWALYCAGKAARDM++Q
Sbjct: 123 YWALNLTSMLCLTSSVLKAFPDSPGLNRTVVNISSLCALQPFKGWALYCAGKAARDMLFQ 182
Query: 628 VLAAEDPSLRVLSYAPGPLDTDMQQIAREASVDPDLRKRLQELKRKGELVDCKVSAQKLL 807
VLA E+P++RVL+YAPGPLDTDMQQ+ARE SVDPD+RK LQELK KG+LVDCKVSAQKLL
Sbjct: 183 VLALEEPNVRVLNYAPGPLDTDMQQLARETSVDPDMRKGLQELKAKGKLVDCKVSAQKLL 242
Query: 808 NLLQKDEFKSGAHVDFYN 861
+LL+KDEFKSGAHVDFY+
Sbjct: 243 SLLEKDEFKSGAHVDFYD 260
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,779,544
Number of extensions: 1078145
Number of successful extensions: 3658
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3651
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,901,872
Effective search space: 3487038048
Effective search space used: 3487038048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012428
(1011 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 763 0.0
Sscrofa_Chr14 557 e-156
>Sscrofa_Chr03
|| Length = 144787322
Score = 763 bits (385), Expect = 0.0
Identities = 385/385 (100%)
Strand = Plus / Minus
Query: 1 ccacggccgcccagacccctgactggtttcgggtcgcagcagttactcgtcgaatttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73095571 ccacggccgcccagacccctgactggtttcgggtcgcagcagttactcgtcgaatttgga 73095512
Query: 61 agcatggagcatggcgtcggtaaggttggcggcctggggcgcgccctgtgcgtggtgacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73095511 agcatggagcatggcgtcggtaaggttggcggcctggggcgcgccctgtgcgtggtgacc 73095452
Query: 121 ggggcctcccgcggtttcggacggacgctggcacagctcctggccccgctgctgtcgcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73095451 ggggcctcccgcggtttcggacggacgctggcacagctcctggccccgctgctgtcgcct 73095392
Query: 181 ggctccgtgttggtcctaaccgcccgcaacgacgaggcgctgcggcacctggaggccgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73095391 ggctccgtgttggtcctaaccgcccgcaacgacgaggcgctgcggcacctggaggccgag 73095332
Query: 241 ttgggctccgagcggcctgacctgcgcgtggtgcgggtgcccgctgatctgggcgccgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73095331 ttgggctccgagcggcctgacctgcgcgtggtgcgggtgcccgctgatctgggcgccgag 73095272
Query: 301 gccggcttgcagcagttgctgggcgcgctgcgcgagctccccagacccgagggcctgcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73095271 gccggcttgcagcagttgctgggcgcgctgcgcgagctccccagacccgagggcctgcag 73095212
Query: 361 cgagtgctgctcttcaacaatgcgg 385
|||||||||||||||||||||||||
Sbjct: 73095211 cgagtgctgctcttcaacaatgcgg 73095187
Score = 668 bits (337), Expect = 0.0
Identities = 337/337 (100%)
Strand = Plus / Minus
Query: 675 aggtcccctggacacagacatgcagcagatagcccgggaggcttccgtggacccagattt 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73091070 aggtcccctggacacagacatgcagcagatagcccgggaggcttccgtggacccagattt 73091011
Query: 735 gcgaaaaaggctgcaggagctgaagagaaagggggaacttgtggattgcaaggtatcagc 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73091010 gcgaaaaaggctgcaggagctgaagagaaagggggaacttgtggattgcaaggtatcagc 73090951
Query: 795 ccagaaactgctgaacttgctgcaaaaggatgaattcaagtctggagcccatgtcgactt 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73090950 ccagaaactgctgaacttgctgcaaaaggatgaattcaagtctggagcccatgtcgactt 73090891
Query: 855 ctataattaataagcccatgtgcttggcttcctggggctttcttcctcccctttcaggca 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73090890 ctataattaataagcccatgtgcttggcttcctggggctttcttcctcccctttcaggca 73090831
Query: 915 cacccaggagccctctagatccccacatcctgccacaagccagccttatgcagataagct 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73090830 cacccaggagccctctagatccccacatcctgccacaagccagccttatgcagataagct 73090771
Query: 975 ttcctgctactgtcctgctctcagatccagccagcag 1011
|||||||||||||||||||||||||||||||||||||
Sbjct: 73090770 ttcctgctactgtcctgctctcagatccagccagcag 73090734
Score = 583 bits (294), Expect = e-164
Identities = 294/294 (100%)
Strand = Plus / Minus
Query: 385 gcctctcttggagatgtgtccaaaagctttgtggacctgactgactcagctgaagtgaac 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73094615 gcctctcttggagatgtgtccaaaagctttgtggacctgactgactcagctgaagtgaac 73094556
Query: 445 agctactgggctctgaacttgacgtccatgctctgcctgacttccagcttcttgaaggct 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73094555 agctactgggctctgaacttgacgtccatgctctgcctgacttccagcttcttgaaggct 73094496
Query: 505 tttcctgacagtcctggcctcagcagaatggtggttaacatctcatcaatctgtgctgtg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73094495 tttcctgacagtcctggcctcagcagaatggtggttaacatctcatcaatctgtgctgtg 73094436
Query: 565 aagcccttcaaaggctgggccctgtactgtgcagggaaggctgcccgtgacatgatatat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73094435 aagcccttcaaaggctgggccctgtactgtgcagggaaggctgcccgtgacatgatatat 73094376
Query: 625 caggttctggctgcagaggaccctagtttgagagtgctgagctatgccccaggt 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73094375 caggttctggctgcagaggaccctagtttgagagtgctgagctatgccccaggt 73094322
>Sscrofa_Chr14
|| Length = 153851969
Score = 557 bits (281), Expect = e-156
Identities = 746/902 (82%), Gaps = 28/902 (3%)
Strand = Plus / Plus
Query: 106 ctgtgcgtggtgaccggggcctcccgcggtttcggacggacgctggcacagctcctggcc 165
||||||||||||||| |||||||| |||||| ||||||| |||||||||||| || |||
Sbjct: 31203413 ctgtgcgtggtgaccagggcctcctacggttttggacggatgctggcacagcttctagcc 31203472
Query: 166 ccgctgctgtcgcctggctccgtgttggtcctaaccgcccgcaacgacgaggcgctgcgg 225
|| | ||||| |||||||||| |||| ||||||| |||| ||| ||| |||| ||| ||
Sbjct: 31203473 ccacagctgttgcctggctccatgtttgtcctaagcgcctgcagtgacaaggcactgtgg 31203532
Query: 226 cacctggaggccgagttgggctccgagcggcctgacctgcgcgtggtgcgggtgcccgct 285
| ||||||||| || |||||||| |||||| || || |
Sbjct: 31203533 aagctggaggcccagctgggctccaggcggcc--------------------tggccacc 31203572
Query: 286 gatctgggcgccgaggccggcttgcagcagttgctgggcgcgctgcgcgagctccccaga 345
|| |||||| | |||||| |||||||||||||||| ||| | |||| | ||||||||||
Sbjct: 31203573 gacctgggccctgaggcccgcttgcagcagttgcttggcaccctgcacaagctccccagg 31203632
Query: 346 cccgagggcctgcagcgagtgctgctcttcaacaatgcggcctctcttggagatgtgtcc 405
||| |||||||||||| |||||||||| |||| | ||| ||| ||||||| |||||||||
Sbjct: 31203633 cccaagggcctgcagcaagtgctgctcatcaaaagtgcagccactcttggggatgtgtcc 31203692
Query: 406 aaaagctttgtggacctgactgactcagctgaagtgaacagctactgggctctgaacttg 465
| | |||| ||||| ||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 31203693 agaggcttcgtggatctggctgacccagctgaagtgaacagctgctgggctctgaacttg 31203752
Query: 466 acgtccatgctctgcctgacttccagcttcttgaaggcttttcctgacagtcctggcctc 525
|| |||||||||| |||||| ||||| ||| |||||||||| || | ||||||||||||
Sbjct: 31203753 acatccatgctcttcctgacctccag-ttcctgaaggctttcccagccagtcctggcctt 31203811
Query: 526 agcagaatggtggttaacatctcatcaatctgtgctgtgaagcccttcaaaggctgggcc 585
|||| | |||||||||||| ||| ||||| || ||||||||| || ||||||
Sbjct: 31203812 ggcagtaatgtggttaacatc-----aat-tgtgccctggagcccttcagagactgggca 31203865
Query: 586 ctgtactgtgcagggaaggctgcccgtgacatgatatatcaggttctggctgcagaggac 645
||||||||| ||| |||||||||| ||||||||| | || ||| ||||||||||||| |
Sbjct: 31203866 ctgtactgtttaggaaaggctgcccatgacatgatgtttccggtcctggctgcagagggc 31203925
Query: 646 cctagtttgagagtgctgagctatgccccaggtcccctggacacagacatgcagcagata 705
|||||| ||| |||||||||||| |||| | | ||| |||||||||| |||||| | ||
Sbjct: 31203926 cctagtgtgatagtgctgagctacaccccggtttccc-ggacacagacctgcagctgtta 31203984
Query: 706 gcccgggaggcttccgtggacccagatttgcgaaaaaggctgcaggagctgaagagaaag 765
|||| |||| | ||| |||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct: 31203985 gcccaggagacgtccatggacccagacttgtgaaaaatgctgcaggagctgaagagaaag 31204044
Query: 766 ggggaacttgtggattgcaaggtatcagcccagaaactgctgaacttgctgcaaaaggat 825
|||||||||||| || |||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 31204045 ggggaacttgtgaatctcaaggtatcagcccagaaactgctaaacttgctgccaaaggac 31204104
Query: 826 gaattcaagtctggagcccatgtcgacttctataattaataagcccatgtgcttggcttc 885
|| || |||| ||||||||| || |||||| ||| ||||| ||||||| |||||||||
Sbjct: 31204105 gagtttgagtcaggagcccatatcaccttctacaatgaataaacccatgtccttggcttc 31204164
Query: 886 ctggggctttcttcctcccctttcaggcacacccaggagccctctagatccccacatcct 945
|||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 31204165 ctggggctttcttcctcctatttcaggcacacccaggagccctgagcctccccgcatcct 31204224
Query: 946 gccacaagccagccttatgcagataagctttcctgctactgtcctgctctcagatccagc 1005
|||| ||||| || ||||||| ||||||| |||||||||||||||||||||| |||||||
Sbjct: 31204225 gccaaaagcctgctttatgcacataagctctcctgctactgtcctgctctcaaatccagc 31204284
Query: 1006 ca 1007
||
Sbjct: 31204285 ca 31204286
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,691,188
Number of extensions: 164
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 6
Length of query: 1011
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 990
Effective length of database: 2,808,413,156
Effective search space: 2780329024440
Effective search space used: 2780329024440
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)