Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012439
(2041 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069438.1| keratin, type II cytoskeletal 71 [Bos taurus]. 795 0.0
Alignment gi|NP_001104574.1| keratin, type II cytoskeletal 73 [Bos taurus]. 642 0.0
Alignment gi|NP_001069412.1| keratin, type II cytoskeletal 72 [Bos taurus]. 588 e-168
Alignment gi|NP_001076916.1| keratin, type II cytoskeletal 74 [Bos taurus]. 585 e-167
Alignment gi|XP_002687306.1| PREDICTED: keratin 6A-like [Bos taurus]. 494 e-139
Alignment gi|NP_001091855.1| keratin, type II cytoskeletal 4 [Bos taurus]. 491 e-138
Alignment gi|NP_001008663.1| keratin, type II cytoskeletal 5 [Bos taurus]. 487 e-137
Alignment gi|NP_001076979.1| keratin 6A [Bos taurus]. 486 e-137
Alignment gi|NP_001070385.1| keratin, type II cytoskeletal 75 [Bos taurus]. 485 e-137
Alignment gi|XP_002687295.1| PREDICTED: cytokeratin type II, component IV... 485 e-137
>ref|NP_001069438.1| keratin, type II cytoskeletal 71 [Bos taurus].
Length = 525
Score = 795 bits (2052), Expect = 0.0
Identities = 419/475 (88%), Positives = 428/475 (90%)
Frame = +2
Query: 215 LYNLGGIRSISFNMANSTXXXXXXXXXXXXXXXXXXSMFGSVALXXXXXXXXXXXXIHQV 394
LYNLGG+RSISFN+A+ + SMFGSVAL IHQV
Sbjct: 48 LYNLGGVRSISFNVASGSGKSGGYGFGRGRASGFAGSMFGSVALGPMCPTVCPPGGIHQV 107
Query: 395 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 574
TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL
Sbjct: 108 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 167
Query: 575 QQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYEEEIN 754
QQLDLNNCKNNLEPILEGYIS LRKQLE LSGDRVRLDSELRSVRDVVEDYKKRYEEEIN
Sbjct: 168 QQLDLNNCKNNLEPILEGYISNLRKQLETLSGDRVRLDSELRSVRDVVEDYKKRYEEEIN 227
Query: 755 RRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHISDMSV 934
RRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFF+CLYEAEIAQIQSHISDMSV
Sbjct: 228 RRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFKCLYEAEIAQIQSHISDMSV 287
Query: 935 ILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK 1114
ILSMDNNRDLNLDSIIDEVRAQYE+IALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK
Sbjct: 288 ILSMDNNRDLNLDSIIDEVRAQYEDIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK 347
Query: 1115 NEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQAK 1294
NEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELE ALHQ+K
Sbjct: 348 NEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEAALHQSK 407
Query: 1295 EELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXXXXXY 1474
EELARM+REYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPV Y
Sbjct: 408 EELARMMREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVSISIISSTSGSGGY 467
Query: 1475 GFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGSSLSAPSKK 1639
GFRPSSVSGGYVANSGSCISGVCSVRGGE+RSRSSTTDYKDALGKGSSLSAPSKK
Sbjct: 468 GFRPSSVSGGYVANSGSCISGVCSVRGGESRSRSSTTDYKDALGKGSSLSAPSKK 522
>ref|NP_001104574.1| keratin, type II cytoskeletal 73 [Bos taurus].
Length = 540
Score = 642 bits (1655), Expect = 0.0
Identities = 351/490 (71%), Positives = 386/490 (78%), Gaps = 15/490 (3%)
Frame = +2
Query: 215 LYNLGGIRSISFNMANSTXXXXXXXXXXXXXXXXXXSMFGSVALXXXXXXXXXXXXIHQV 394
LY+LG RS+SFNMA+ + SMFGSVAL IHQV
Sbjct: 48 LYSLGCARSVSFNMASGSGRAGGYGFSRGRASGFAGSMFGSVALGPMCPSLCPPGGIHQV 107
Query: 395 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 574
VN+SLLAPLNVELDPEIQKV AQEREQIKALNNKFASFIDKVRFLEQQNQVL TKWELL
Sbjct: 108 IVNKSLLAPLNVELDPEIQKVCAQEREQIKALNNKFASFIDKVRFLEQQNQVLGTKWELL 167
Query: 575 QQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYEEEIN 754
QQ DL+NCKNNLEPILEGYIS LRKQLE LSGDRVRLDSELRS+RDVVEDYKKRYEEEIN
Sbjct: 168 QQQDLDNCKNNLEPILEGYISNLRKQLEMLSGDRVRLDSELRSMRDVVEDYKKRYEEEIN 227
Query: 755 RRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHISDMSV 934
+RT AENEFV+LKKDVDAAY +KVELQAKVD++++EIKFF CLYE EIAQ+QSHISD SV
Sbjct: 228 KRTTAENEFVVLKKDVDAAYMSKVELQAKVDALEREIKFFTCLYEGEIAQMQSHISDTSV 287
Query: 935 ILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK 1114
ILSMDNNR+L+L+SII EVRAQYE+IALKSKAEAEALYQTKFQELQLAAGRHGDDLK+TK
Sbjct: 288 ILSMDNNRNLDLNSIIAEVRAQYEDIALKSKAEAEALYQTKFQELQLAAGRHGDDLKHTK 347
Query: 1115 NEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQAK 1294
NEI+ELTRLIQR+RSE E+VKKQ SNLETAI DAEQRG ALKDA+AKLDELE AL QAK
Sbjct: 348 NEIAELTRLIQRLRSETESVKKQCSNLETAITDAEQRGHCALKDAQAKLDELEAALLQAK 407
Query: 1295 EELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPV-------------X 1435
EELARM+ EYQELMS KLALD+EIATYRKLLE EECRMSGE+ + V
Sbjct: 408 EELARMMCEYQELMSTKLALDIEIATYRKLLEGEECRMSGEYTNSVSISVISSSMAGTAG 467
Query: 1436 XXXXXXXXXXXXYGFRPSSVSGGYVANSGSCI--SGVCSVRGGETRSRSSTTDYKDALGK 1609
YG+RPSSV GGY G C+ SG CS RG ST++ KD LGK
Sbjct: 468 TGAGFGYSGSGTYGYRPSSVGGGYGFLLGGCVTGSGNCSPRGEAKTRLGSTSEIKDLLGK 527
Query: 1610 GSSLSAPSKK 1639
+LS+P+KK
Sbjct: 528 TPALSSPTKK 537
>ref|NP_001069412.1| keratin, type II cytoskeletal 72 [Bos taurus].
Length = 524
Score = 588 bits (1516), Expect = e-168
Identities = 326/440 (74%), Positives = 353/440 (80%), Gaps = 1/440 (0%)
Frame = +2
Query: 323 SMFGSVALXXXXXXXXXXXXIHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKF 502
++FGS L I QVTVN+SLL+PLNVELDPEIQKVRAQEREQIKALNNKF
Sbjct: 89 TVFGSAGLGPACPSVCPPGGIPQVTVNKSLLSPLNVELDPEIQKVRAQEREQIKALNNKF 148
Query: 503 ASFIDKVRFLEQQNQVLETKWELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVR 682
ASFIDKVRFLEQQNQVL TKWELLQQLDLNNCKNNLEPILEGY S LRKQLE LSGDRVR
Sbjct: 149 ASFIDKVRFLEQQNQVLGTKWELLQQLDLNNCKNNLEPILEGYTSNLRKQLEMLSGDRVR 208
Query: 683 LDSELRSVRDVVEDYKKRYEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQE 862
LDSELRS+RDVVE+YKKRYE EINRRTAAENEFV+LKKDVDAAY NKVELQAKVDS+ E
Sbjct: 209 LDSELRSMRDVVEEYKKRYEVEINRRTAAENEFVMLKKDVDAAYMNKVELQAKVDSLTDE 268
Query: 863 IKFFQCLYEAEIAQIQSHISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEA 1042
IKF +CLYE EIAQ+QSHISD SVILSMDNNRDL+LDSII +VRAQYEEIALKSKAEAEA
Sbjct: 269 IKFLKCLYEGEIAQLQSHISDTSVILSMDNNRDLDLDSIIAQVRAQYEEIALKSKAEAEA 328
Query: 1043 LYQTKFQELQLAAGRHGDDLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQ 1222
LYQTK QELQ AG+HGDDLK TK EIS+L R+IQRIRSEI NVKKQ SNLE AIADAEQ
Sbjct: 329 LYQTKIQELQATAGQHGDDLKLTKAEISDLNRMIQRIRSEIGNVKKQCSNLEMAIADAEQ 388
Query: 1223 RGDNALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEEC 1402
RGD ALKDARAKLDEL+ AL QAKEELARM+REYQELMS KLALDMEIATYRKLLE EEC
Sbjct: 389 RGDCALKDARAKLDELDAALLQAKEELARMMREYQELMSTKLALDMEIATYRKLLEGEEC 448
Query: 1403 RMSGEFPSPVXXXXXXXXXXXXXYGFRPSSVSGGYVA-NSGSCISGVCSVRGGETRSRSS 1579
RMSGE+P+ V G + S G+ A +S S S V+ T+
Sbjct: 449 RMSGEYPNSVSISVISNTST----GAGGTGFSMGFGALSSYSYKSSAVDVK---TKGSCG 501
Query: 1580 TTDYKDALGKGSSLSAPSKK 1639
++ KDA K S S +KK
Sbjct: 502 GSELKDAPAKTSGSSCATKK 521
>ref|NP_001076916.1| keratin, type II cytoskeletal 74 [Bos taurus].
Length = 550
Score = 585 bits (1509), Expect = e-167
Identities = 321/459 (69%), Positives = 365/459 (79%), Gaps = 20/459 (4%)
Frame = +2
Query: 323 SMFGSVALXXXXXXXXXXXXIHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKF 502
SMFGSV L IHQVTVN+SLLAPLNVELDPEIQKVRAQEREQI ALNNKF
Sbjct: 93 SMFGSVVLGPVCPSMCPPGGIHQVTVNKSLLAPLNVELDPEIQKVRAQEREQIMALNNKF 152
Query: 503 ASFIDKVRFLEQQNQVLETKWELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVR 682
ASFIDKVRFLEQQNQVL TKWELLQQ+DLNNC+ NLEPILEGYI LRKQLE LSGDR+R
Sbjct: 153 ASFIDKVRFLEQQNQVLGTKWELLQQMDLNNCRKNLEPILEGYIGNLRKQLEMLSGDRLR 212
Query: 683 LDSELRSVRDVVEDYKKRYEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQE 862
LDSEL+ +RD+VEDYKKRYE EIN+RTAAEN+FV+LKKD DAAY KVELQAKVDS+D++
Sbjct: 213 LDSELKGMRDLVEDYKKRYEVEINQRTAAENDFVVLKKDADAAYTVKVELQAKVDSLDKD 272
Query: 863 IKFFQCLYEAEIAQIQSHISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEA 1042
IKF +CLY+AE+AQIQ+H S+ SVILSMDNNR L+LDSII EVRAQYE+IALKSKAEAEA
Sbjct: 273 IKFLKCLYDAEVAQIQTHTSETSVILSMDNNRYLDLDSIIAEVRAQYEDIALKSKAEAEA 332
Query: 1043 LYQTKFQELQLAAGRHGDDLKNTKNEISELTRLIQRIRSEIENVKKQA------------ 1186
LYQ+K QELQLAAGRHGDDLK+TKNE+SEL RLIQRIR EI NVKKQA
Sbjct: 333 LYQSKIQELQLAAGRHGDDLKHTKNEMSELNRLIQRIRCEIANVKKQAFSVCSKPAPCPL 392
Query: 1187 --SNLETAIADAEQRGDNALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDM 1360
+NLETAIADAEQRGD+ALKDARAKLDELE A+HQAKEELARMLREYQELMSLKLALDM
Sbjct: 393 QCANLETAIADAEQRGDSALKDARAKLDELEAAMHQAKEELARMLREYQELMSLKLALDM 452
Query: 1361 EIATYRKLLESEECRMSGEFPSPVXXXXXXXXXXXXXYGFRPSS-----VSGGYVANSGS 1525
EIATY KLLE EEC MSGE PS V +G+ P S + +A++G+
Sbjct: 453 EIATYSKLLEGEECWMSGENPSSV--SISVISSSASSFGYHPGSSASTDLGASTMASTGT 510
Query: 1526 CISGVCSVRGGETRSRSSTT-DYKDALGKGSSLSAPSKK 1639
S S + G+TR++ + D KD+ K + +S+ ++K
Sbjct: 511 --SSSSSTQSGQTRAKGARVGDPKDSQDKSTPVSSRARK 547
>ref|XP_002687306.1| PREDICTED: keratin 6A-like [Bos taurus].
Length = 635
Score = 494 bits (1271), Expect = e-139
Identities = 252/352 (71%), Positives = 304/352 (86%), Gaps = 2/352 (0%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN+SLL PLNVE+DP+I +V+ QEREQIK LNNKFASFIDKVRFLEQQN+VLETK
Sbjct: 155 IQEVTVNQSLLQPLNVEIDPQIGQVKTQEREQIKTLNNKFASFIDKVRFLEQQNKVLETK 214
Query: 563 WELLQQLDLNNCK--NNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKR 736
W LLQQ + NNLEP+ E YI++LR L+++ G+R RLDSELR+++D+VED+KK+
Sbjct: 215 WSLLQQQGTHPITGTNNLEPLFENYINSLRSYLDSILGERGRLDSELRNMQDLVEDFKKK 274
Query: 737 YEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSH 916
YE+EIN+RTAAENEFV LKKDVDAAY NKVELQAKVD++ EI F LY+ E++Q+QSH
Sbjct: 275 YEDEINKRTAAENEFVTLKKDVDAAYMNKVELQAKVDALTDEINFLTTLYDMELSQMQSH 334
Query: 917 ISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGD 1096
+SD SV+LSMDNNR L+LDSII EV+AQYEEIA +SKAEAEALYQTK ELQ AGRHGD
Sbjct: 335 VSDTSVVLSMDNNRSLDLDSIIAEVKAQYEEIAQRSKAEAEALYQTKLGELQTTAGRHGD 394
Query: 1097 DLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEG 1276
DLK+TK+EISEL R+IQR+R+EIENVKKQ + L++AIA+AEQRG+ ALKDA AKL EL+
Sbjct: 395 DLKSTKSEISELNRVIQRLRAEIENVKKQIAKLQSAIAEAEQRGELALKDANAKLQELQA 454
Query: 1277 ALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPV 1432
AL QAK++LAR+LR+YQELM++KLALD+EIATYRKLLE EECRMSGE PS V
Sbjct: 455 ALQQAKDDLARLLRDYQELMNVKLALDVEIATYRKLLEGEECRMSGECPSAV 506
>ref|NP_001091855.1| keratin, type II cytoskeletal 4 [Bos taurus].
Length = 549
Score = 491 bits (1264), Expect = e-138
Identities = 269/461 (58%), Positives = 326/461 (70%), Gaps = 11/461 (2%)
Frame = +2
Query: 215 LYNLGGIRSISFNMANSTXXXXXXXXXXXXXXXXXXSMFGSVALXXXXXXXXXXXX---- 382
LYNLGG +SIS +MA S FG+
Sbjct: 52 LYNLGGNKSISISMAGCRQGAGFGAAGGFGAAGGFGSGFGAGGFGSGFGGSFGGRGGAGF 111
Query: 383 -------IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQ 541
I +VT+N+SLL PL+VE+DPEIQKVR +EREQIK LNNKFASFIDKVRFLEQQ
Sbjct: 112 PVCPAGGIQEVTINQSLLTPLHVEIDPEIQKVRTEEREQIKLLNNKFASFIDKVRFLEQQ 171
Query: 542 NQVLETKWELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVE 721
N+VLETKW+LLQQ NLEP E YI+ LRKQ+++L+ D+ RL SEL+ ++D VE
Sbjct: 172 NKVLETKWKLLQQQTTTTSVKNLEPFFEAYINALRKQVDSLANDKGRLQSELKIMQDSVE 231
Query: 722 DYKKRYEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIA 901
DYK +YE+EIN+R AAEN+FV+LKKDVDAAY NKVEL+AKVD+++ EI F + LY AE++
Sbjct: 232 DYKTKYEDEINKRAAAENDFVVLKKDVDAAYMNKVELEAKVDALNDEINFLRVLYAAELS 291
Query: 902 QIQSHISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAA 1081
Q+Q+ +SD SV+LSMDNNR+L+LDSII EVRAQYEEIA +SKAEAEALYQ K Q+LQ +
Sbjct: 292 QMQTQVSDTSVVLSMDNNRNLDLDSIIAEVRAQYEEIAQRSKAEAEALYQIKVQQLQTSV 351
Query: 1082 GRHGDDLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKL 1261
+HGD L+NTKNEISEL RLIQR+R+EIENVKKQ L+ ++ADAEQRG+ ALKDA +K
Sbjct: 352 DQHGDSLRNTKNEISELNRLIQRLRAEIENVKKQCQTLQGSVADAEQRGEVALKDAYSKR 411
Query: 1262 DELEGALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXX 1441
ELE AL +AKEELAR+LREYQELMS+KLALD+EIATYRKLLE EECRMSGE S V
Sbjct: 412 TELEAALQKAKEELARVLREYQELMSVKLALDIEIATYRKLLEGEECRMSGECQSAVSIS 471
Query: 1442 XXXXXXXXXXYGFRPSSVSGGYVANSGSCISGVCSVRGGET 1564
G S G+ SGSC G+ GG +
Sbjct: 472 VVGGAASAGGLGGALGG-SSGFGLGSGSCAVGLGGGLGGSS 511
>ref|NP_001008663.1| keratin, type II cytoskeletal 5 [Bos taurus].
Length = 601
Score = 487 bits (1254), Expect = e-137
Identities = 245/380 (64%), Positives = 311/380 (81%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN+SLL PLN+++DP IQ+VR +EREQIK LNNKFASFIDKVRFLEQQN+VL+TK
Sbjct: 141 IQEVTVNQSLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTK 200
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ + NLEP+LE YI+ LR+QL+ + G+R RLDSELR+++D+VED+K +YE
Sbjct: 201 WALLQEQGTKTVRQNLEPLLEQYINNLRRQLDGIVGERGRLDSELRNMQDLVEDFKNKYE 260
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
+EIN+RT AENEFV+LKKDVDAAY NKVEL+AKVD++ EI F + ++AE++Q+Q+H+S
Sbjct: 261 DEINKRTTAENEFVMLKKDVDAAYMNKVELEAKVDALMDEINFMKMFFDAELSQMQTHVS 320
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR L+LDSII EV+AQYE+IA +S+ EAE+ YQTK++ELQ AGRHGDDL
Sbjct: 321 DTSVVLSMDNNRSLDLDSIIAEVKAQYEDIANRSRTEAESWYQTKYEELQQTAGRHGDDL 380
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+NTK+EISE+ R+IQR+RSEI+NVKKQ +NL+ AIADAEQRG+ ALKDAR+KL ELE AL
Sbjct: 381 RNTKHEISEMNRMIQRLRSEIDNVKKQCANLQNAIADAEQRGELALKDARSKLAELEDAL 440
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AK+++AR+LREYQELM+ KLALD+EIATYRKLLE EECR+SGE PV
Sbjct: 441 QKAKQDMARLLREYQELMNTKLALDVEIATYRKLLEGEECRLSGEGVGPVNISVV----- 495
Query: 1463 XXXYGFRPSSVSGGYVANSG 1522
++VS GY SG
Sbjct: 496 -------TNTVSSGYGGGSG 508
>ref|NP_001076979.1| keratin 6A [Bos taurus].
Length = 571
Score = 486 bits (1252), Expect = e-137
Identities = 254/415 (61%), Positives = 321/415 (77%), Gaps = 4/415 (0%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN+SLL PLN+++DP IQ+VR +EREQIK LNNKFASFIDKVRFLEQQN+VL+TK
Sbjct: 135 IQEVTVNQSLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTK 194
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ + NLEP+ E YI+ LR+QL+++ G+R RLDSELR ++D VED+K +YE
Sbjct: 195 WTLLQEQGTKTVRQNLEPLFEQYINNLRRQLDSILGERGRLDSELRGMQDTVEDFKNKYE 254
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
+EIN+RT AENEFV LKKDVDAAY NKVELQAKVD++ EI F + Y+AE+AQ+Q+HIS
Sbjct: 255 DEINKRTVAENEFVNLKKDVDAAYMNKVELQAKVDALTDEINFLRTFYDAELAQMQTHIS 314
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR+L+LDSII EV+AQYEEIA +S+AEAE+ YQ+K++ELQ+ AGRHGDDL
Sbjct: 315 DTSVVLSMDNNRNLDLDSIIAEVKAQYEEIAQRSRAEAESWYQSKYEELQVTAGRHGDDL 374
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+NTK EISE+ R+IQR+RSEI++VKKQ ++L++AIADAEQRG+ ALKDAR+KL +LE AL
Sbjct: 375 RNTKQEISEINRVIQRLRSEIDHVKKQCASLQSAIADAEQRGELALKDARSKLADLEDAL 434
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AK+++AR+L+EYQELM++KLALD+EIATYRKLLE EECR+SGE V
Sbjct: 435 QKAKQDMARLLKEYQELMNVKLALDVEIATYRKLLEGEECRLSGEGVGQVNISVV----- 489
Query: 1463 XXXYGFRPSSVSGGYVANSG----SCISGVCSVRGGETRSRSSTTDYKDALGKGS 1615
S+VSGGY G S + V GG S SS GS
Sbjct: 490 -------QSTVSGGYGGAGGYGGASGLGSGLGVSGGSGYSYSSGHSLGGGFSSGS 537
>ref|NP_001070385.1| keratin, type II cytoskeletal 75 [Bos taurus].
Length = 543
Score = 485 bits (1249), Expect = e-137
Identities = 259/419 (61%), Positives = 327/419 (78%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN+SLL PLN+++DP IQ+VR +EREQIK LNNKFASFIDKVRFLEQQN+VLETK
Sbjct: 117 IQEVTVNQSLLTPLNLQIDPNIQRVRKEEREQIKTLNNKFASFIDKVRFLEQQNKVLETK 176
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ + +LEP E YI+ LR+QL++++ +R RLD+ELR+++DVVED+K RYE
Sbjct: 177 WSLLQEQGTRTVRQSLEPFFEAYITDLRRQLDSITTERGRLDAELRTMQDVVEDFKVRYE 236
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
+EIN+RTAAENEFV LKKDVDAAY NKV+L+AK +S+ EI F Q L+EAE+ Q+Q+ +S
Sbjct: 237 DEINKRTAAENEFVALKKDVDAAYLNKVDLEAKANSLTDEINFLQMLFEAELCQMQTRVS 296
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR L+LDSII EV+AQYEEIA +S+AEAE+ YQTK++ELQ+ AG+HGDDL
Sbjct: 297 DTSVVLSMDNNRSLDLDSIIAEVKAQYEEIANRSRAEAESWYQTKYEELQVTAGQHGDDL 356
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+NTK EISE R+IQR+R+EI+NVKKQ ++L+TAIADAEQRG+ ALKDARAKL +LE AL
Sbjct: 357 RNTKQEISETNRMIQRLRAEIDNVKKQCASLQTAIADAEQRGELALKDARAKLVDLEEAL 416
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
++K+++AR+LREYQELM++KLALD+EIATYRKLLE EECR+SGE SPV
Sbjct: 417 QKSKQDMARLLREYQELMNIKLALDVEIATYRKLLEGEECRLSGEGVSPVNISVV----- 471
Query: 1463 XXXYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGSSLSAPSKK 1639
S+VS GY S S SG + GG S T +LG GSS S S +
Sbjct: 472 -------TSTVSSGYGGGS-SIGSGSLGLSGGS--GCSFMTSGGHSLG-GSSFSNSSSR 519
>ref|XP_002687295.1| PREDICTED: cytokeratin type II, component IV isoform 2 [Bos taurus].
Length = 549
Score = 485 bits (1248), Expect = e-137
Identities = 253/415 (60%), Positives = 321/415 (77%), Gaps = 4/415 (0%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN+SLL PLN+++DP IQ+VR +EREQIK LNNKFASFIDKVRFLEQQN+VL+TK
Sbjct: 113 IQEVTVNQSLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTK 172
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ + NLEP+ E YI+ LR+QL+++ G+R RLDSELR ++D VED+K +YE
Sbjct: 173 WTLLQEQGTRTVRQNLEPLFEQYINNLRRQLDSILGERGRLDSELRGMQDTVEDFKNKYE 232
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
+EIN+RTAAENEFV LKKDVD AY NKVELQAKVD++ EI F + Y+AE+AQ+Q+HIS
Sbjct: 233 DEINKRTAAENEFVKLKKDVDIAYMNKVELQAKVDALTDEINFLRTFYDAELAQMQTHIS 292
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR+L+LDSII EV+AQYEEIA +S+AEAE+ YQ+K++EL++ AGRHGDDL
Sbjct: 293 DTSVVLSMDNNRNLDLDSIIAEVKAQYEEIAQRSRAEAESWYQSKYEELRVTAGRHGDDL 352
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+NTK EISE+ R+IQR+RSEI++VKKQ ++L++AIADAEQRG+ ALKDAR+KL +LE AL
Sbjct: 353 RNTKQEISEINRVIQRLRSEIDHVKKQCASLQSAIADAEQRGELALKDARSKLADLEDAL 412
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AK+++AR+L+EYQELM++KLALD+EIATYRKLLE EECR+SGE V
Sbjct: 413 QKAKQDMARLLKEYQELMNVKLALDVEIATYRKLLEGEECRLSGEGVGQVNISVV----- 467
Query: 1463 XXXYGFRPSSVSGGYVANSG----SCISGVCSVRGGETRSRSSTTDYKDALGKGS 1615
S+VSGGY G S + V GG S SS GS
Sbjct: 468 -------QSTVSGGYGGAGGYGGASGLGSGLGVSGGSGYSYSSGHSLGGGFSSGS 515
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,447,481
Number of extensions: 1887339
Number of successful extensions: 13703
Number of sequences better than 1.0e-05: 157
Number of HSP's gapped: 12769
Number of HSP's successfully gapped: 181
Length of query: 680
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 571
Effective length of database: 14,074,782
Effective search space: 8036700522
Effective search space used: 8036700522
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012439
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012439
(2041 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001183958.1| keratin 71 [Canis lupus familiaris]. 771 0.0
Alignment gi|XP_850012.1| PREDICTED: similar to keratin 6 irs3 [Canis fam... 681 0.0
Alignment gi|XP_543647.2| PREDICTED: similar to keratin 6 irs4 [Canis fam... 614 e-175
Alignment gi|XP_543646.2| PREDICTED: similar to keratin protein K6irs [Ca... 595 e-170
Alignment gi|XP_860457.1| PREDICTED: similar to Keratin, type II cytoskel... 489 e-138
Alignment gi|XP_850008.1| PREDICTED: similar to Keratin, type II cytoskel... 489 e-138
Alignment gi|XP_543650.2| PREDICTED: similar to cytokeratin type II [Cani... 484 e-136
Alignment gi|XP_543641.2| PREDICTED: similar to keratin 6L [Canis familia... 482 e-136
Alignment gi|NP_001003392.1| keratin, type II cytoskeletal 1 [Canis lupus... 480 e-135
Alignment gi|NP_001014299.1| keratin, type II cytoskeletal 2 oral [Canis ... 463 e-130
>ref|NP_001183958.1| keratin 71 [Canis lupus familiaris].
Length = 525
Score = 771 bits (1992), Expect = 0.0
Identities = 408/475 (85%), Positives = 421/475 (88%)
Frame = +2
Query: 215 LYNLGGIRSISFNMANSTXXXXXXXXXXXXXXXXXXSMFGSVALXXXXXXXXXXXXIHQV 394
LY+LGGIR+ISFN+A+S+ SMFGSVAL IHQV
Sbjct: 48 LYSLGGIRNISFNVASSSGKSGGYGFGRGRASGFAGSMFGSVALGPVCPSVCPPGGIHQV 107
Query: 395 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 574
TVN++LLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL
Sbjct: 108 TVNKNLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 167
Query: 575 QQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYEEEIN 754
QQLDLNNCKNNLEPILEGYIS LRKQLE LSGDRVRLDSELRSVRDVVEDYKKRYEEEIN
Sbjct: 168 QQLDLNNCKNNLEPILEGYISNLRKQLETLSGDRVRLDSELRSVRDVVEDYKKRYEEEIN 227
Query: 755 RRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHISDMSV 934
RRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFF+CLYEAEIAQIQSHISDMSV
Sbjct: 228 RRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFKCLYEAEIAQIQSHISDMSV 287
Query: 935 ILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK 1114
ILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK
Sbjct: 288 ILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK 347
Query: 1115 NEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQAK 1294
NEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELE ALHQAK
Sbjct: 348 NEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEAALHQAK 407
Query: 1295 EELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXXXXXY 1474
EELARMLREYQEL+SLKLALDMEIATYRKLLESEECRMSGEFPSPV Y
Sbjct: 408 EELARMLREYQELLSLKLALDMEIATYRKLLESEECRMSGEFPSPVSISIISSSSGSGGY 467
Query: 1475 GFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGSSLSAPSKK 1639
GFRPSSVSGGYVA+SGSCISGVCSVRGG+ R R S +DY+D LGKGSS S SKK
Sbjct: 468 GFRPSSVSGGYVASSGSCISGVCSVRGGDGRGRGSGSDYRDTLGKGSSQSTSSKK 522
>ref|XP_850012.1| PREDICTED: similar to keratin 6 irs3 [Canis familiaris].
Length = 599
Score = 681 bits (1758), Expect = 0.0
Identities = 368/490 (75%), Positives = 396/490 (80%), Gaps = 15/490 (3%)
Frame = +2
Query: 215 LYNLGGIRSISFNMANSTXXXXXXXXXXXXXXXXXXSMFGSVALXXXXXXXXXXXXIHQV 394
LY+LGG RSIS NMA+ + SMFGSVAL IHQV
Sbjct: 48 LYSLGGTRSISLNMASGSGRVGGYGLGRGRASGFAGSMFGSVALGPVCPSVCPPGGIHQV 107
Query: 395 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 574
TVN++LLAPLNVELDPEIQKVR QEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL
Sbjct: 108 TVNKNLLAPLNVELDPEIQKVRTQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 167
Query: 575 QQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYEEEIN 754
QQLD+NNCKNNLEPILEGYIS LRKQLE LSGDRVRLDSELRS+RDVVEDYKKRYEEEIN
Sbjct: 168 QQLDVNNCKNNLEPILEGYISNLRKQLETLSGDRVRLDSELRSMRDVVEDYKKRYEEEIN 227
Query: 755 RRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHISDMSV 934
+RT AENEFV+LKKDVDAAY +KVELQAKVD++D EIKFF+CLYE EIAQIQSHISD SV
Sbjct: 228 KRTTAENEFVVLKKDVDAAYMSKVELQAKVDALDGEIKFFKCLYEGEIAQIQSHISDTSV 287
Query: 935 ILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK 1114
ILSMDNNRDLNLDSII EVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLK+TK
Sbjct: 288 ILSMDNNRDLNLDSIIAEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKHTK 347
Query: 1115 NEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQAK 1294
NEISELTRLIQR+RSEIE+VKKQ SNLETAIADAEQRGD ALKDARAKLDELE ALHQAK
Sbjct: 348 NEISELTRLIQRLRSEIESVKKQCSNLETAIADAEQRGDCALKDARAKLDELEAALHQAK 407
Query: 1295 EELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPV-------------X 1435
EELARMLREYQELMS KL+LD+EIATYRKLLE EECRMSGE+ + V
Sbjct: 408 EELARMLREYQELMSTKLSLDIEIATYRKLLEGEECRMSGEYTNAVSISVISSTPAGTAG 467
Query: 1436 XXXXXXXXXXXXYGFRPSSVSGGYVANSGSCI--SGVCSVRGGETRSRSSTTDYKDALGK 1609
YG+RPSSVSGGY SG C+ SG CS RG S +++KD GK
Sbjct: 468 TGAGFGFGGAGSYGYRPSSVSGGYGVLSGGCVTGSGNCSPRGESKTRLGSASEFKDPQGK 527
Query: 1610 GSSLSAPSKK 1639
S+LS+P+KK
Sbjct: 528 TSALSSPAKK 537
>ref|XP_543647.2| PREDICTED: similar to keratin 6 irs4 [Canis familiaris].
Length = 619
Score = 614 bits (1583), Expect = e-175
Identities = 333/443 (75%), Positives = 363/443 (81%), Gaps = 4/443 (0%)
Frame = +2
Query: 323 SMFGSVALXXXXXXXXXXXXIHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKF 502
SMFGS+AL IHQVTVN SLLAPLNVELDPEIQ+VR QEREQIKALNNKF
Sbjct: 178 SMFGSMALGPVCPSACPPGGIHQVTVNRSLLAPLNVELDPEIQRVRTQEREQIKALNNKF 237
Query: 503 ASFIDKVRFLEQQNQVLETKWELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVR 682
ASFIDKVRFLEQQNQVLETKWELLQQLDLNNC+ NLEPILEGYI LRKQLE LSGDRVR
Sbjct: 238 ASFIDKVRFLEQQNQVLETKWELLQQLDLNNCRKNLEPILEGYIGNLRKQLETLSGDRVR 297
Query: 683 LDSELRSVRDVVEDYKKRYEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQE 862
LDSELRSVRDVVEDYKKRYE EINRRTAAENEFV+LKKD DAAY KVELQAKVDS+D++
Sbjct: 298 LDSELRSVRDVVEDYKKRYEVEINRRTAAENEFVVLKKDADAAYTVKVELQAKVDSLDKD 357
Query: 863 IKFFQCLYEAEIAQIQSHISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEA 1042
+KF +CLY+AEIAQIQ+H S+ SVILSMDNNRDL+LDSII ++RAQYEEIALKSKAEAEA
Sbjct: 358 LKFLKCLYDAEIAQIQTHASETSVILSMDNNRDLDLDSIITKIRAQYEEIALKSKAEAEA 417
Query: 1043 LYQTKFQELQLAAGRHGDDLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQ 1222
LYQ+K QELQLAAGRHGDDLK+TKNE+SEL RLIQRIR EI NVKKQ +NLETAIADAEQ
Sbjct: 418 LYQSKIQELQLAAGRHGDDLKHTKNEMSELNRLIQRIRCEIANVKKQCANLETAIADAEQ 477
Query: 1223 RGDNALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEEC 1402
RGD ALKDARAKLDELE ALHQAKEELARMLREYQEL+SLKLALDMEIATYRKLLE EEC
Sbjct: 478 RGDCALKDARAKLDELEAALHQAKEELARMLREYQELLSLKLALDMEIATYRKLLEGEEC 537
Query: 1403 RMSGEFPSPVXXXXXXXXXXXXXYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSST 1582
RMSGE PS V +RP S G A +GS G S +TR++ +
Sbjct: 538 RMSGENPSSVSISVISSGGSSY---YRPDP-STGADAGAGSVAGGSGSAWARQTRAKGAR 593
Query: 1583 T----DYKDALGKGSSLSAPSKK 1639
D +D GK + SAP++K
Sbjct: 594 VGDLKDPQDLKGKSAPASAPARK 616
>ref|XP_543646.2| PREDICTED: similar to keratin protein K6irs [Canis familiaris].
Length = 523
Score = 595 bits (1535), Expect = e-170
Identities = 329/443 (74%), Positives = 352/443 (79%), Gaps = 4/443 (0%)
Frame = +2
Query: 323 SMFGSVALXXXXXXXXXXXXIHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKF 502
++FGS L I QVTVN SLLAPLNVELDPEIQKVRAQEREQIKALNNKF
Sbjct: 89 TVFGSAGLGPVCPSVCPPGGIPQVTVNRSLLAPLNVELDPEIQKVRAQEREQIKALNNKF 148
Query: 503 ASFIDKVRFLEQQNQVLETKWELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVR 682
ASFIDKVRFLEQQNQVLETKW LLQQLDLNNC+ NLEPI EGYIS LRKQLE +GDRVR
Sbjct: 149 ASFIDKVRFLEQQNQVLETKWNLLQQLDLNNCRKNLEPIYEGYISNLRKQLETQTGDRVR 208
Query: 683 LDSELRSVRDVVEDYKKRYEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQE 862
LDSELRS++D+VEDYKKRYE EINRRTAAENEFV+LKKDVDAAY NKVELQAKVDS+ E
Sbjct: 209 LDSELRSMQDLVEDYKKRYEVEINRRTAAENEFVVLKKDVDAAYMNKVELQAKVDSLTDE 268
Query: 863 IKFFQCLYEAEIAQIQSHISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEA 1042
IKFF+CLYE EIAQ+QSHISDMSVILSMDN RDL+LDSIIDEVRAQYEEIALKSKAEAEA
Sbjct: 269 IKFFKCLYEGEIAQMQSHISDMSVILSMDNYRDLDLDSIIDEVRAQYEEIALKSKAEAEA 328
Query: 1043 LYQTKFQELQLAAGRHGDDLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQ 1222
LYQTK QELQ+ AGRHGDDLK TK EISEL RLIQRIRSEI NVKKQ +NLETAIADAEQ
Sbjct: 329 LYQTKIQELQVTAGRHGDDLKLTKAEISELNRLIQRIRSEIGNVKKQCANLETAIADAEQ 388
Query: 1223 RGDNALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEEC 1402
RGD ALKDARAKLDELE ALHQAKEELAR+LREYQEL+S KLALDMEIATYRKLLE EEC
Sbjct: 389 RGDCALKDARAKLDELEAALHQAKEELARLLREYQELLSTKLALDMEIATYRKLLEGEEC 448
Query: 1403 RMSGEFPSPVXXXXXXXXXXXXXYGFRPSSVSGGYVANSGSCISGV-CSVRGGETRS--- 1570
RMSGE PSSVS ++N+G+ G SV G + S
Sbjct: 449 RMSGE---------------------HPSSVSISVISNTGAGAGGAGFSVGFGASSSFSF 487
Query: 1571 RSSTTDYKDALGKGSSLSAPSKK 1639
+ + D K G GS P K
Sbjct: 488 KPAAVDVKTKGGCGSEFKDPGPK 510
>ref|XP_860457.1| PREDICTED: similar to Keratin, type II cytoskeletal 6A (Cytokeratin
6A) (CK 6A) (K6a keratin) isoform 3 [Canis familiaris].
Length = 559
Score = 489 bits (1260), Expect = e-138
Identities = 254/417 (60%), Positives = 323/417 (77%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN++LL PLN+++DP IQ+VR +EREQIK LNNKFASFIDKVRFLEQQN+VL+TK
Sbjct: 124 IQEVTVNQNLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTK 183
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ + NLEP+ E YI+ LR+QL+++ G+R RLDSELRS++D VED+K +YE
Sbjct: 184 WTLLQEQGTKTVRQNLEPLFEQYINNLRRQLDSILGERGRLDSELRSMQDTVEDFKNKYE 243
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
EEIN+RTAAENEFV LKKDVDAAY NKVELQAKVD++ EI F + LY+AE++Q+Q+HIS
Sbjct: 244 EEINKRTAAENEFVTLKKDVDAAYMNKVELQAKVDALTDEINFTRALYDAELSQMQTHIS 303
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR+L+LDSII EV+AQYEEIA +S+AEAE+ YQ+K++ELQ++AGRHGDDL
Sbjct: 304 DTSVVLSMDNNRNLDLDSIIAEVKAQYEEIAQRSRAEAESWYQSKYEELQVSAGRHGDDL 363
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+NTK EI+E+ R+IQR+RSEI++VKKQ +NL++AIADAEQRG+ ALKDA+ KL LE AL
Sbjct: 364 RNTKQEIAEINRMIQRLRSEIDHVKKQCTNLQSAIADAEQRGEMALKDAKNKLAGLEDAL 423
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AK+++AR+L+EYQELM+ KLALD+EIATYRKLLE EECR+SGE V
Sbjct: 424 QKAKQDMARLLKEYQELMNTKLALDVEIATYRKLLEGEECRLSGEGVGQVNISVV----- 478
Query: 1463 XXXYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGSSLSAPS 1633
S+VSGGY G G + G S Y G G+ S+ S
Sbjct: 479 -------QSTVSGGYGGAGG--FGGASGMGSGSGLGGGSGYSYGSGHGLGAGFSSSS 526
>ref|XP_850008.1| PREDICTED: similar to Keratin, type II cytoskeletal 6A (Cytokeratin
6A) (CK 6A) (K6a keratin) isoform 2 [Canis familiaris].
Length = 570
Score = 489 bits (1260), Expect = e-138
Identities = 254/417 (60%), Positives = 323/417 (77%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN++LL PLN+++DP IQ+VR +EREQIK LNNKFASFIDKVRFLEQQN+VL+TK
Sbjct: 135 IQEVTVNQNLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTK 194
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ + NLEP+ E YI+ LR+QL+++ G+R RLDSELRS++D VED+K +YE
Sbjct: 195 WTLLQEQGTKTVRQNLEPLFEQYINNLRRQLDSILGERGRLDSELRSMQDTVEDFKNKYE 254
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
EEIN+RTAAENEFV LKKDVDAAY NKVELQAKVD++ EI F + LY+AE++Q+Q+HIS
Sbjct: 255 EEINKRTAAENEFVTLKKDVDAAYMNKVELQAKVDALTDEINFTRALYDAELSQMQTHIS 314
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR+L+LDSII EV+AQYEEIA +S+AEAE+ YQ+K++ELQ++AGRHGDDL
Sbjct: 315 DTSVVLSMDNNRNLDLDSIIAEVKAQYEEIAQRSRAEAESWYQSKYEELQVSAGRHGDDL 374
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+NTK EI+E+ R+IQR+RSEI++VKKQ +NL++AIADAEQRG+ ALKDA+ KL LE AL
Sbjct: 375 RNTKQEIAEINRMIQRLRSEIDHVKKQCTNLQSAIADAEQRGEMALKDAKNKLAGLEDAL 434
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AK+++AR+L+EYQELM+ KLALD+EIATYRKLLE EECR+SGE V
Sbjct: 435 QKAKQDMARLLKEYQELMNTKLALDVEIATYRKLLEGEECRLSGEGVGQVNISVV----- 489
Query: 1463 XXXYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGSSLSAPS 1633
S+VSGGY G G + G S Y G G+ S+ S
Sbjct: 490 -------QSTVSGGYGGAGG--FGGASGMGSGSGLGGGSGYSYGSGHGLGAGFSSSS 537
>ref|XP_543650.2| PREDICTED: similar to cytokeratin type II [Canis familiaris].
Length = 975
Score = 484 bits (1246), Expect = e-136
Identities = 240/350 (68%), Positives = 307/350 (87%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN+SLL PLN+++DP IQ+VR +EREQIK LNNKFASFIDKVRFLEQQN+VLETK
Sbjct: 121 IQEVTVNQSLLTPLNLQIDPAIQRVRKEEREQIKTLNNKFASFIDKVRFLEQQNKVLETK 180
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
WELLQ+ + NLEP + YI+ LR+QL++++ +R RLD+ELR+++DVVED+K RYE
Sbjct: 181 WELLQEQGSKTVRQNLEPFFDTYINDLRRQLDSVTTERGRLDAELRNMQDVVEDFKVRYE 240
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
+EIN+RTAAENEFV LKKDVD+AY NKVEL+AKV+S+ EI F + L+EAE++Q+Q+ +S
Sbjct: 241 DEINKRTAAENEFVALKKDVDSAYMNKVELEAKVNSLTDEINFLRMLFEAELSQMQTQVS 300
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR L+LDSII EV+AQYE+IA +S+AEAE+ YQTK++ELQ+ AGRHGDDL
Sbjct: 301 DTSVVLSMDNNRSLDLDSIIAEVKAQYEDIANRSRAEAESWYQTKYEELQVTAGRHGDDL 360
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+NTK EISE+ R+IQR+R+EI+++KKQ S+L+TAIADAEQRG+ ALKDARAKL +LE AL
Sbjct: 361 RNTKQEISEMNRVIQRLRAEIDSIKKQCSSLQTAIADAEQRGELALKDARAKLVDLEEAL 420
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPV 1432
+AK+++AR+LREYQELM++KLALD+EIATYRKLLE EECR+SGE SPV
Sbjct: 421 QKAKQDMARLLREYQELMNVKLALDVEIATYRKLLEGEECRLSGEGVSPV 470
Score = 478 bits (1230), Expect = e-135
Identities = 253/421 (60%), Positives = 325/421 (77%), Gaps = 3/421 (0%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN+SLL PL++E+DP +Q+VR +E+EQIK LNNKFASFIDKVRFLEQQN+VLETK
Sbjct: 559 IQEVTVNQSLLTPLHLEIDPSLQRVRKEEKEQIKTLNNKFASFIDKVRFLEQQNKVLETK 618
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ + N+EP+ E YIS LR+QLE L G+R RL+SEL++++DVVED+K +YE
Sbjct: 619 WSLLQEH--KTTRANIEPMFEAYISNLRRQLECLGGERTRLESELKNMQDVVEDFKNKYE 676
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
EEINRRT AENEFV+LKKDVDAAY NKVEL+AKVD++ EI F + Y+AE+AQ+Q+ IS
Sbjct: 677 EEINRRTVAENEFVVLKKDVDAAYMNKVELEAKVDALMDEINFLRAFYDAELAQLQAQIS 736
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
+ SV+LSMDNNR L+LDSII EV+AQYE+IA +S+AEAE+ YQTK++ELQ +AGRHGDDL
Sbjct: 737 ETSVVLSMDNNRKLDLDSIISEVKAQYEDIANRSRAEAESWYQTKYEELQRSAGRHGDDL 796
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+ TK EISEL R++QR+RSEI+N+KKQ + +++AIADAEQRG+ ALKDA+ KL ELE AL
Sbjct: 797 RTTKMEISELNRVMQRLRSEIDNLKKQCATMQSAIADAEQRGELALKDAKHKLAELEDAL 856
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AK+++AR LREYQELM++KLALD+EIATYRKLLE EECR++GE PV
Sbjct: 857 QKAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEECRLTGEGVGPVNISVV----- 911
Query: 1463 XXXYGFRPSSVSGGYVANSGS-CIS--GVCSVRGGETRSRSSTTDYKDALGKGSSLSAPS 1633
SS GY + GS C++ G S G + S+T ++ G SS+ S
Sbjct: 912 -------SSSGGTGYSSGGGSLCMTGGGYSSSLGYSSGGGFSSTSGRNMSGSSSSMRIIS 964
Query: 1634 K 1636
K
Sbjct: 965 K 965
>ref|XP_543641.2| PREDICTED: similar to keratin 6L [Canis familiaris].
Length = 535
Score = 482 bits (1241), Expect = e-136
Identities = 251/408 (61%), Positives = 317/408 (77%), Gaps = 2/408 (0%)
Frame = +2
Query: 215 LYNLGGIRSISFNMANSTXXXXXXXXXXXXXXXXXXSMFGSVALXXXXXXXXXXXXIHQV 394
LYNLGG +SIS ++A + G A I +V
Sbjct: 62 LYNLGGSKSISVSVAGGASSGRALGGFSFGSG----AFAGLGAGRQVFGPACPPGGIQEV 117
Query: 395 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 574
TVN+SLL PLNVE+DPEIQ+VR QEREQIK LNNKFASFIDKVRFLEQQN+VLETKW LL
Sbjct: 118 TVNQSLLTPLNVEIDPEIQRVRTQEREQIKTLNNKFASFIDKVRFLEQQNKVLETKWALL 177
Query: 575 QQLDLNN--CKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYEEE 748
Q+ N+ +NNLEP+ E Y+ LR+QL+ L DR RLDSELR+V+DV+ED+K +YE+E
Sbjct: 178 QEQGQNSGVTRNNLEPLFENYLGNLRRQLDNLQSDRGRLDSELRNVQDVLEDFKSKYEDE 237
Query: 749 INRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHISDM 928
IN+RTAAENEFVLLKKDVDAAY ++++LQ K ++ +E+ F LYE E++Q+Q+H+SD
Sbjct: 238 INKRTAAENEFVLLKKDVDAAYMSRMDLQGKASTLTEELDFLNHLYEMELSQVQTHVSDT 297
Query: 929 SVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKN 1108
+V+LSMDNNR L+LDSII EV+AQYE IA +S+AEAEA YQTK++ELQ+ AG+HGD+L++
Sbjct: 298 NVVLSMDNNRSLDLDSIIAEVKAQYELIAQRSRAEAEAWYQTKYEELQVTAGKHGDNLRD 357
Query: 1109 TKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQ 1288
TKNEI+ELTR +QR++ E++ VKKQ L+TAIA+AEQRGD ALKDA+ KL +L+ ALHQ
Sbjct: 358 TKNEIAELTRTVQRLQGEVDAVKKQCQQLQTAIAEAEQRGDMALKDAQKKLGDLDMALHQ 417
Query: 1289 AKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPV 1432
AKE+LAR+LR+YQ LM++KLALD+EIATYRKLLESEE RMSGE PS V
Sbjct: 418 AKEDLARLLRDYQALMNVKLALDVEIATYRKLLESEESRMSGECPSAV 465
>ref|NP_001003392.1| keratin, type II cytoskeletal 1 [Canis lupus familiaris].
Length = 619
Score = 480 bits (1235), Expect = e-135
Identities = 257/419 (61%), Positives = 323/419 (77%), Gaps = 4/419 (0%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VT+N+SLL PLNVE+DPEIQKV+ +EREQIK+LNN+FASFIDKVRFLEQQNQVL+TK
Sbjct: 153 IQEVTINQSLLQPLNVEIDPEIQKVKTREREQIKSLNNQFASFIDKVRFLEQQNQVLQTK 212
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
WELLQQ+D + ++LEP E YIS LR++++ L D+ R+DSEL++++D+VEDY+ +YE
Sbjct: 213 WELLQQVDTSTRTHSLEPYFENYISNLRRRVDQLKSDQSRMDSELKNMQDLVEDYRNKYE 272
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
+EIN+RT AENEFV +KKDVDAA+ NKV+LQAKVD++ QEI F LY+AE++Q+Q+ IS
Sbjct: 273 DEINKRTNAENEFVTIKKDVDAAFMNKVDLQAKVDNLQQEIDFLTTLYQAELSQMQTQIS 332
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
+ +VILSMDNNR L+LDSII EV+AQYEEIA KSKAEAEALYQTK++ELQ+ AG+HGD+L
Sbjct: 333 ETNVILSMDNNRSLDLDSIISEVKAQYEEIAQKSKAEAEALYQTKYEELQITAGKHGDNL 392
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
K+TK EISEL R+ QR+RSEI++VKKQ S L+ +I+DAEQRG+NALKDA++KL ELE AL
Sbjct: 393 KSTKMEISELNRVAQRLRSEIDSVKKQISALQQSISDAEQRGENALKDAQSKLAELEDAL 452
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AKE++AR+LR+YQELM+ KLALDMEIATYR LLE EE RMSGE V
Sbjct: 453 QKAKEDMARLLRDYQELMNTKLALDMEIATYRTLLEGEESRMSGECAPNVSVSVNTSHTT 512
Query: 1463 XXXYGFRP----SSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGSSLSA 1627
G R SV GG GS SG S G S + G GSS S+
Sbjct: 513 ISGGGGRGGGGFGSVGGGGGYGGGSYGSGGGSYGSGGGGGGSYGSGGGGGGGYGSSSSS 571
>ref|NP_001014299.1| keratin, type II cytoskeletal 2 oral [Canis lupus familiaris].
Length = 653
Score = 463 bits (1191), Expect = e-130
Identities = 258/415 (62%), Positives = 305/415 (73%), Gaps = 4/415 (0%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN+SLL PLNVE+DP+I +V+ QEREQIK LNNKFASFIDKVRFLEQQN+VLETK
Sbjct: 172 IQEVTVNQSLLQPLNVEIDPQIGQVKTQEREQIKTLNNKFASFIDKVRFLEQQNKVLETK 231
Query: 563 WELLQQ--LDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKR 736
WELLQQ + NNLEP E YIS LR+QL+ G+R L+ EL++++D+VED+KK+
Sbjct: 232 WELLQQQTTGAGSGPNNLEPFFESYISFLRRQLDLALGERGNLEGELKNMQDLVEDFKKK 291
Query: 737 YEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSH 916
YE+EIN+R AAENEFV LKKDVD AY K ELQAKVDS+ E+ F + LYE SH
Sbjct: 292 YEDEINKRNAAENEFVGLKKDVDVAYMTKTELQAKVDSLTDELNFLRTLYE------MSH 345
Query: 917 ISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGD 1096
+SD SV+LSMDNNR L+LDSII EV+AQYEEIA +SKAEAEALYQTK ELQ AGRHGD
Sbjct: 346 VSDTSVVLSMDNNRCLDLDSIIAEVKAQYEEIAQRSKAEAEALYQTKLGELQTTAGRHGD 405
Query: 1097 DLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEG 1276
DLKNTK+EI EL R+IQR+R+EIENVKKQ +NL+ AIA+AEQRG+ ALKDA AKL L+
Sbjct: 406 DLKNTKSEIMELNRMIQRLRAEIENVKKQNANLQAAIAEAEQRGEMALKDANAKLQGLQT 465
Query: 1277 ALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFP--SPVXXXXXX 1450
AL +AK++LAR+L+EYQELM++KLALD+EIATYRKLLE EECRMSGE S V
Sbjct: 466 ALQKAKDDLARLLKEYQELMNVKLALDVEIATYRKLLEGEECRMSGECHECSVVSNVTST 525
Query: 1451 XXXXXXXYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGS 1615
G SGGY RGG T SR S+ Y G S
Sbjct: 526 SSGSGGSRGGFSGGSSGGY--------------RGGST-SRGSSGGYGGVRGSSS 565
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,407,186
Number of extensions: 1941659
Number of successful extensions: 14968
Number of sequences better than 1.0e-05: 200
Number of HSP's gapped: 13928
Number of HSP's successfully gapped: 254
Length of query: 680
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 570
Effective length of database: 15,207,544
Effective search space: 8668300080
Effective search space used: 8668300080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012439
(2041 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929315.3| PREDICTED: keratin, type II cytoskeletal 71-... 702 0.0
Alignment gi|XP_003126223.2| PREDICTED: keratin, type II cytoskeletal 73 ... 624 e-179
Alignment gi|NP_001230743.1| keratin 74 [Sus scrofa]. 617 e-176
Alignment gi|XP_001927253.2| PREDICTED: LOW QUALITY PROTEIN: keratin, typ... 491 e-139
Alignment gi|XP_003126221.1| PREDICTED: keratin, type II cytoskeletal 5 [... 484 e-137
Alignment gi|XP_003355441.1| PREDICTED: keratin, type II cytoskeletal 75-... 477 e-135
Alignment gi|XP_001929338.1| PREDICTED: keratin, type II cytoskeletal 1b ... 475 e-134
Alignment gi|XP_001927240.2| PREDICTED: keratin, type II cytoskeletal 79 ... 468 e-132
Alignment gi|XP_001927280.1| PREDICTED: keratin, type II cytoskeletal 3-l... 466 e-131
Alignment gi|NP_001092053.1| keratin, type II cytoskeletal 2 epidermal [S... 460 e-129
>ref|XP_001929315.3| PREDICTED: keratin, type II cytoskeletal 71-like [Sus scrofa].
Length = 519
Score = 702 bits (1812), Expect = 0.0
Identities = 374/477 (78%), Positives = 403/477 (84%), Gaps = 2/477 (0%)
Frame = +2
Query: 215 LYNLGGIRSISFNMANSTXXXXXXXXXXXXXXXXXXSMFGSVALXXXXXXXXXXXXIHQV 394
LYNLGG +SIS ++A + G I +V
Sbjct: 47 LYNLGGNKSISISVAGGSRAGGFGGGRSSCISGFGGGYGGGFG-------GGFPGGIQEV 99
Query: 395 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 574
TVN+SLL PLNVE+DP+I +V+AQEREQIK LNNKFASFIDKVRFLEQQN+VLETKW LL
Sbjct: 100 TVNQSLLQPLNVEIDPQIGQVKAQEREQIKTLNNKFASFIDKVRFLEQQNKVLETKWNLL 159
Query: 575 QQLDLNNCK--NNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYEEE 748
QQ N+ NNLEP+ E YI++ R L+++ G++ RLDSELR+++D+VED+KK+YE+E
Sbjct: 160 QQQGTNSITGTNNLEPLFENYINSQRSYLDSILGEKGRLDSELRNMQDLVEDFKKKYEDE 219
Query: 749 INRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHISDM 928
IN+RTAAENEFV LKKDVDAAYANKVELQAKVDSMDQEIKFF+CLYEAEIAQIQSHISDM
Sbjct: 220 INKRTAAENEFVTLKKDVDAAYANKVELQAKVDSMDQEIKFFKCLYEAEIAQIQSHISDM 279
Query: 929 SVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKN 1108
SVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKN
Sbjct: 280 SVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKN 339
Query: 1109 TKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQ 1288
TKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQ
Sbjct: 340 TKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQ 399
Query: 1289 AKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXXXX 1468
AKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPV
Sbjct: 400 AKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVSISIISTTSGSS 459
Query: 1469 XYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGSSLSAPSKK 1639
YGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGSSLSAPSKK
Sbjct: 460 GYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGSSLSAPSKK 516
>ref|XP_003126223.2| PREDICTED: keratin, type II cytoskeletal 73 [Sus scrofa].
Length = 518
Score = 624 bits (1608), Expect = e-179
Identities = 345/469 (73%), Positives = 369/469 (78%), Gaps = 13/469 (2%)
Frame = +2
Query: 215 LYNLGGIRSISFNMANSTXXXXXXXXXXXXXXXXXXSMFGSVALXXXXXXXXXXXXIHQV 394
LYNLGGIRSISFNMANST SMFGSVAL IHQV
Sbjct: 48 LYNLGGIRSISFNMANSTGKSGGYGFGRGRASGFAGSMFGSVALGPVCPTVCPPGGIHQV 107
Query: 395 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 574
TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL
Sbjct: 108 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 167
Query: 575 QQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYEEEIN 754
QQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE EIN
Sbjct: 168 QQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYEVEIN 227
Query: 755 RRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHISDMSV 934
RRTAAENEFV LKKDVD AY NKVELQAKVDS+ EIKFF+ LYE EIAQIQSHISD SV
Sbjct: 228 RRTAAENEFVELKKDVDTAYMNKVELQAKVDSLTDEIKFFKYLYEGEIAQIQSHISDTSV 287
Query: 935 ILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK 1114
ILSMDNNRDL+LDSII EVRAQYE+I+LKSKAEAEALYQ+K QELQ+ AG+HGDDLK TK
Sbjct: 288 ILSMDNNRDLDLDSIIAEVRAQYEDISLKSKAEAEALYQSKIQELQVTAGQHGDDLKLTK 347
Query: 1115 NEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQAK 1294
EIS+L RLIQRI +EI +VKKQ SNLETAI DAEQRGD LKDA+AKLDELEGAL+QAK
Sbjct: 348 AEISDLNRLIQRICAEIGSVKKQCSNLETAITDAEQRGDCTLKDAQAKLDELEGALYQAK 407
Query: 1295 EELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPV-------------X 1435
EELARMLREYQELMS KLALD+EIATYRKLLE EECRM G++P+ +
Sbjct: 408 EELARMLREYQELMSTKLALDVEIATYRKLLEGEECRMYGDYPNSMSISVISNTIARAGG 467
Query: 1436 XXXXXXXXXXXXYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSST 1582
Y ++PS+V V GSC S + + SR +T
Sbjct: 468 AGFSVGFGASSTYSYKPSAVD---VKTKGSCGSEFKDLPAKTSGSRRAT 513
>ref|NP_001230743.1| keratin 74 [Sus scrofa].
Length = 531
Score = 617 bits (1590), Expect = e-176
Identities = 329/440 (74%), Positives = 369/440 (83%), Gaps = 1/440 (0%)
Frame = +2
Query: 323 SMFGSVALXXXXXXXXXXXXIHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKF 502
SMFGS+AL IHQVTVN+SLLAPLNVELDPEIQKVR QEREQIKALNNKF
Sbjct: 92 SMFGSMALGPMYPSMCPPGGIHQVTVNKSLLAPLNVELDPEIQKVRTQEREQIKALNNKF 151
Query: 503 ASFIDKVRFLEQQNQVLETKWELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVR 682
ASFIDKVRFLEQQNQVLETKW+LLQQLDL+NCK NLEPILEGYISTL+KQLEALSGDR+R
Sbjct: 152 ASFIDKVRFLEQQNQVLETKWQLLQQLDLDNCKKNLEPILEGYISTLQKQLEALSGDRMR 211
Query: 683 LDSELRSVRDVVEDYKKRYEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQE 862
LDSEL+ ++D+VEDYKKRYE EINRRTAAENEFV+LKKD DAAY KVELQAKVDS+D++
Sbjct: 212 LDSELKIMQDLVEDYKKRYEVEINRRTAAENEFVVLKKDADAAYTVKVELQAKVDSLDKD 271
Query: 863 IKFFQCLYEAEIAQIQSHISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEA 1042
IKF +CLY+AEIAQ+Q+H S+ SVILSMDNNRDL+LDSII EVRAQYE+IALKSKAEAEA
Sbjct: 272 IKFLKCLYDAEIAQVQTHASETSVILSMDNNRDLDLDSIIAEVRAQYEDIALKSKAEAEA 331
Query: 1043 LYQTKFQELQLAAGRHGDDLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQ 1222
LYQ+K QELQLAAG+HGDDLK+T+N+ISEL RLIQRIR EI NVKKQ SNLETAIADAEQ
Sbjct: 332 LYQSKIQELQLAAGQHGDDLKHTRNDISELNRLIQRIRCEIANVKKQCSNLETAIADAEQ 391
Query: 1223 RGDNALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEEC 1402
RG+NALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLE EEC
Sbjct: 392 RGENALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLEGEEC 451
Query: 1403 RMSGEFPSPVXXXXXXXXXXXXXYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSR-SS 1579
RMSGE PS V YG+ P S++ + + S S R G+TR++ +
Sbjct: 452 RMSGENPSSV--SISVISSSASGYGYHPGSLASS-DPGASTVASSSGSTRSGQTRAKVTQ 508
Query: 1580 TTDYKDALGKGSSLSAPSKK 1639
D KD K + +S P++K
Sbjct: 509 AGDPKDPQSKSAPVSGPARK 528
>ref|XP_001927253.2| PREDICTED: LOW QUALITY PROTEIN: keratin, type II cytoskeletal 4 [Sus
scrofa].
Length = 611
Score = 491 bits (1264), Expect = e-139
Identities = 263/410 (64%), Positives = 315/410 (76%), Gaps = 9/410 (2%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I QVT+N+SLL PL+VE+DPEIQKVR QEREQIK LN+KFASFIDKVRFLEQQN+VLETK
Sbjct: 194 IQQVTINQSLLTPLHVEIDPEIQKVRTQEREQIKILNDKFASFIDKVRFLEQQNKVLETK 253
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQQ NL+P E YIS LRKQL+ L+ D+ L SEL+ ++D VED+K +YE
Sbjct: 254 WNLLQQQKTTTSSKNLDPFFEAYISALRKQLDTLTNDKGYLQSELKIMQDSVEDFKAKYE 313
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
EEIN+RTAAEN+FV+LKKDVDAAY NKVEL+AKVD ++ EI F + LY AE++Q+Q+H+S
Sbjct: 314 EEINKRTAAENDFVVLKKDVDAAYMNKVELEAKVDGLNDEINFLRILYAAELSQMQTHVS 373
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNRDL+LDSII EVRAQYEEI +SKAEAEALYQ K Q+LQ++ +HGD L
Sbjct: 374 DTSVVLSMDNNRDLDLDSIIAEVRAQYEEITQRSKAEAEALYQIKIQQLQISVDQHGDSL 433
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
KNTKNEISEL R+IQR+R+EIEN+KKQ L+ ++ADAEQRG+ ALKDA +K ELE AL
Sbjct: 434 KNTKNEISELNRMIQRLRAEIENIKKQCQTLQGSVADAEQRGEAALKDAYSKRAELEAAL 493
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AKEELARMLREYQELMS+KLALD+EIATYRKLLE EECRMSGE S V
Sbjct: 494 KKAKEELARMLREYQELMSVKLALDIEIATYRKLLEGEECRMSGECQSAVSISVVGGAAS 553
Query: 1463 XXXYGF-RPSSVSG-----GYVANSGSCI---SGVCSVRGGETRSRSSTT 1585
G S SG G+ + SGS SGVC G + S ++T+
Sbjct: 554 AGGIGSGGVGSCSGFGLGAGFGSGSGSGFGFGSGVCGSAGSKIISTTTTS 603
>ref|XP_003126221.1| PREDICTED: keratin, type II cytoskeletal 5 [Sus scrofa].
Length = 602
Score = 484 bits (1246), Expect = e-137
Identities = 238/350 (68%), Positives = 303/350 (86%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN+SLL PLN+++DP IQ+VR +EREQIK LNNKFASFIDKVRFLEQQN+VL+TK
Sbjct: 145 IQEVTVNQSLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTK 204
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ + NLEP+ E YI+ LR+QL+++ G+R RLDSELR+++D+VED+K +YE
Sbjct: 205 WTLLQEQGTKTVRQNLEPLFEQYINNLRRQLDSILGERGRLDSELRNMQDLVEDFKNKYE 264
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
+EIN+RT AENEFV+LKKDVDAAY NKVEL+AKVD++ EI F + +EAE++Q+Q+H+S
Sbjct: 265 DEINKRTTAENEFVMLKKDVDAAYMNKVELEAKVDALMDEINFTKMFFEAELSQMQTHVS 324
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR+L+LDSII EV+AQYE+IA +S+ EAE+ YQTK++ELQ AGRHGDDL
Sbjct: 325 DTSVVLSMDNNRNLDLDSIIAEVKAQYEDIANRSRTEAESWYQTKYEELQQTAGRHGDDL 384
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+NTK+EISE+ R+IQR+R+EI+NVKKQ +NL+ AIADAEQRG+ ALKDAR KL ELE AL
Sbjct: 385 RNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEDAL 444
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPV 1432
+AK+++AR+LREYQELM+ KLALD+EIATYRKLLE EECR+SGE PV
Sbjct: 445 QKAKQDMARLLREYQELMNTKLALDVEIATYRKLLEGEECRLSGEGVGPV 494
>ref|XP_003355441.1| PREDICTED: keratin, type II cytoskeletal 75-like [Sus scrofa].
Length = 526
Score = 477 bits (1228), Expect = e-135
Identities = 253/418 (60%), Positives = 324/418 (77%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN+SLL PL++E+DP +Q+VR +EREQIK LNNKFASFIDKVRFLEQQN+VLETK
Sbjct: 115 IQEVTVNQSLLTPLHLEIDPSLQRVRKEEREQIKTLNNKFASFIDKVRFLEQQNKVLETK 174
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ + N+EP+ E YIS LR+QL++L G+R RL+ EL+S++DVVED+K +YE
Sbjct: 175 WSLLQEH--KTTRANIEPMFEAYISNLRRQLDSLGGERSRLEVELKSMQDVVEDFKNKYE 232
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
EEINRRT AENEFV+LKKDVDAAY +KVEL+AKV+++ EI F + Y+AE+AQ+Q+ IS
Sbjct: 233 EEINRRTVAENEFVVLKKDVDAAYMSKVELEAKVEALMDEINFLRAFYDAELAQLQAQIS 292
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
+ SVILSMDNNR L+LDSII EV+AQYE+IA +S+AEAE+ YQ K++ELQ +AGRHGDDL
Sbjct: 293 ETSVILSMDNNRKLDLDSIISEVKAQYEDIANRSRAEAESWYQIKYEELQRSAGRHGDDL 352
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
++TK EISEL R+IQR+RSEI+N+KKQ + L++AIADAEQRG+ ALKDA+ KL ELE AL
Sbjct: 353 RSTKMEISELNRVIQRLRSEIDNLKKQCATLQSAIADAEQRGELALKDAKHKLAELEDAL 412
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AK+++AR LREYQELM++KLALD+EIATYRKLLE EECR++GE PV
Sbjct: 413 QKAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEECRLTGEGVGPVNISVV----- 467
Query: 1463 XXXYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGSSLSAPSK 1636
SS GY + G C++G G S SST+ ++ G SS+ SK
Sbjct: 468 -------SSSGGSGYSSGGGLCMTGGGLSYGSSGGSFSSTSG-RNMSGSSSSMRIISK 517
>ref|XP_001929338.1| PREDICTED: keratin, type II cytoskeletal 1b [Sus scrofa].
Length = 595
Score = 475 bits (1223), Expect = e-134
Identities = 240/385 (62%), Positives = 306/385 (79%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VT+N+SLL PL +E+DPEIQ+++ QEREQI LNNKFASFIDKVRFLEQQNQVL+TK
Sbjct: 138 IQEVTINQSLLEPLCLEVDPEIQRIKTQEREQIMVLNNKFASFIDKVRFLEQQNQVLQTK 197
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
WELLQQ++ + NNLEPILE YIS L+KQ++ L+ +++R SE+RS++DVVEDYK +YE
Sbjct: 198 WELLQQINTSTWTNNLEPILESYISKLQKQVDFLNAEQMRQSSEIRSMQDVVEDYKNKYE 257
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
EEINRRT+ EN+FV+LKKDVDA+Y +KV+LQ+K D + +E++F +CL++ E++Q+Q++I+
Sbjct: 258 EEINRRTSCENDFVILKKDVDASYMSKVDLQSKADILFEEVEFLKCLFQLELSQMQTNIT 317
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D +VILSMDNNR L+LDSIID VR QYE IA KSK EAEALYQTK+QELQ+ AGRHGD+L
Sbjct: 318 DTNVILSMDNNRSLDLDSIIDAVRTQYELIAQKSKEEAEALYQTKYQELQITAGRHGDEL 377
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
K +K EISEL IQR+++EI NV+KQ + TAI+DAE+RGD ALKDA+ KL ++E AL
Sbjct: 378 KTSKMEISELNITIQRLQAEISNVRKQIDQMYTAISDAEERGDRALKDAQQKLQDMEDAL 437
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
QAKE++AR+LR+YQEL+ KL+LD+EIATYRKLLE EECRMSGE S V
Sbjct: 438 QQAKEDMARLLRDYQELLGTKLSLDVEIATYRKLLEGEECRMSGELQSHVSISVQSSQVT 497
Query: 1463 XXXYGFRPSSVSGGYVANSGSCISG 1537
G SGGY SG SG
Sbjct: 498 VSGAGGGGGPGSGGYGGGSGDYSSG 522
>ref|XP_001927240.2| PREDICTED: keratin, type II cytoskeletal 79 [Sus scrofa].
Length = 535
Score = 468 bits (1204), Expect = e-132
Identities = 245/408 (60%), Positives = 315/408 (77%), Gaps = 2/408 (0%)
Frame = +2
Query: 215 LYNLGGIRSISFNMANSTXXXXXXXXXXXXXXXXXXSMFGSVALXXXXXXXXXXXXIHQV 394
LYNLGG +SIS ++A + G A I QV
Sbjct: 62 LYNLGGSKSISVSVAGGASSGRNLGGFGLGRG----AYVGLGAGRQMFGLACPPGGIQQV 117
Query: 395 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 574
TVN+SLL PLNVE+DPEI++VR QEREQIK LN+KFASFIDKVRFLEQQN+VLETKW LL
Sbjct: 118 TVNQSLLTPLNVEIDPEIRQVRTQEREQIKTLNDKFASFIDKVRFLEQQNKVLETKWVLL 177
Query: 575 QQLDLNN--CKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYEEE 748
Q+ + + NLEP+ E YIS LR QL++L +R RLDSELR+++D+VED+K +YE+E
Sbjct: 178 QEQGQKSGVTRKNLEPLFENYISNLRMQLDSLQSERGRLDSELRNMQDLVEDFKNKYEDE 237
Query: 749 INRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHISDM 928
IN+R AAENEFV+LKKDVDAA+ +++L KVD + EI F + LYE E++Q+Q+H+SD
Sbjct: 238 INKRNAAENEFVVLKKDVDAAFMGRMDLHGKVDGLTDEINFLRHLYEEELSQMQTHVSDT 297
Query: 929 SVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKN 1108
+VILSMDNNR+L+LDSII EV+AQYE+IA +S+AEAEA YQ+K++ELQ+ AG+HGD+L++
Sbjct: 298 NVILSMDNNRNLDLDSIIAEVKAQYEQIAQRSRAEAEAWYQSKYEELQVTAGKHGDNLRD 357
Query: 1109 TKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQ 1288
TKNEISELTR +QR++ E++ KKQ +L++AI +AEQRGD ALKDA+ KL +L+ ALHQ
Sbjct: 358 TKNEISELTRTVQRLQGEVDAAKKQCQHLQSAIEEAEQRGDLALKDAQKKLGDLDMALHQ 417
Query: 1289 AKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPV 1432
AKE+LAR+LR+YQ LM++KLALD+EIATYRKLLESEE RMSGE PS V
Sbjct: 418 AKEDLARLLRDYQALMNVKLALDVEIATYRKLLESEESRMSGECPSAV 465
>ref|XP_001927280.1| PREDICTED: keratin, type II cytoskeletal 3-like [Sus scrofa].
Length = 655
Score = 466 bits (1200), Expect = e-131
Identities = 256/412 (62%), Positives = 315/412 (76%), Gaps = 2/412 (0%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN+SLL PLNVE+DP+I +V+AQEREQIK LN+KFASFIDKVRFLEQQN+VLETK
Sbjct: 170 IQEVTVNQSLLQPLNVEIDPQIGQVKAQEREQIKTLNDKFASFIDKVRFLEQQNKVLETK 229
Query: 563 WELLQQLDLNNCKNN--LEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKR 736
W LLQ+ + NN LE E YIS+L+ L+ L ++ +L ELRS+ ++VED+KK+
Sbjct: 230 WSLLQEQGSGSNTNNRNLESFFENYISSLKAFLDGLHIEKDKLQEELRSMEEMVEDFKKK 289
Query: 737 YEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSH 916
YEEEIN+RTAAEN+FV+LKKD+DAAY KVEL+AKVDS+ EI F + LY+AE++Q+QS
Sbjct: 290 YEEEINKRTAAENDFVVLKKDIDAAYMTKVELEAKVDSVTDEINFLKALYDAELSQLQSD 349
Query: 917 ISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGD 1096
SD SV+LSMDNNRDL+LDSII EVRAQYE IA +SKAEAEALYQTK EL+ AGRHGD
Sbjct: 350 TSDTSVVLSMDNNRDLDLDSIIAEVRAQYEAIAQRSKAEAEALYQTKLGELETTAGRHGD 409
Query: 1097 DLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEG 1276
DLK+T++EISEL RLIQR+++EIE++KKQ +NL+TA+ADAEQRG+ ALKDA KL EL+
Sbjct: 410 DLKSTRSEISELNRLIQRLQAEIESIKKQNTNLQTAVADAEQRGEVALKDADTKLQELKV 469
Query: 1277 ALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXX 1456
AL QAKE+LAR+L+EYQELM++KLALD+EIATYR LLE EECRMSGE S V
Sbjct: 470 ALQQAKEDLARLLKEYQELMNVKLALDVEIATYRTLLEGEECRMSGECQSAV-------- 521
Query: 1457 XXXXXYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKG 1612
+ SS SGG SG+ VRG RS ++ LG G
Sbjct: 522 SIEMVHNTSSSSSSGG---GSGAPGKXELGVRG---RSWGPRRPWQRGLGNG 567
>ref|NP_001092053.1| keratin, type II cytoskeletal 2 epidermal [Sus scrofa].
Length = 642
Score = 460 bits (1183), Expect = e-129
Identities = 241/427 (56%), Positives = 316/427 (74%), Gaps = 12/427 (2%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
IH+V+VN+SLL PLN+++DPEIQ V++QEREQIK LNNKFA FIDKVRFLEQQNQVL+TK
Sbjct: 161 IHEVSVNQSLLQPLNLKIDPEIQNVKSQEREQIKTLNNKFACFIDKVRFLEQQNQVLKTK 220
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
WELLQQ+D+ C NLEP+ + YIS L+ Q+ L ++ D+EL + +D+VE+++K+YE
Sbjct: 221 WELLQQIDVRTCTINLEPLFQEYISRLQNQVNMLCAEKTSQDTELNNQQDLVEEFRKKYE 280
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
+EIN+RTAAEN+FV LKKDVD AY NK +LQAKVD + QE+ F + L++AE++Q+Q +++
Sbjct: 281 DEINKRTAAENDFVTLKKDVDNAYINKADLQAKVDVLSQELAFLKILFDAELSQMQQNVT 340
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
+ +VILSMDN+R+L+L+ II EV++QYEEIA +SKAEAEALY +K++ELQ+ AG+HGD L
Sbjct: 341 ETNVILSMDNSRNLDLNDIISEVQSQYEEIAHRSKAEAEALYHSKYEELQITAGKHGDSL 400
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
K K EI EL R+IQR+++EI V+KQ N++ +IADAEQRG+NALKDA+ KL ELE AL
Sbjct: 401 KEVKMEICELNRMIQRLQAEISQVRKQCKNVQDSIADAEQRGENALKDAQNKLKELEEAL 460
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPV---------- 1432
+AKE LA +LR+YQELM++KLALD+EIATYRKLLE EECRMSG+ S V
Sbjct: 461 QKAKENLACLLRDYQELMNVKLALDVEIATYRKLLEGEECRMSGDLSSNVTMSVTSSTIS 520
Query: 1433 XXXXXXXXXXXXXYGFRPSSVSGGYVANSGSCISG--VCSVRGGETRSRSSTTDYKDALG 1606
G + SS GGY + S S SG S RGG S S +K G
Sbjct: 521 SNVASRAGFGGHGSGGKWSSSGGGYSSGSSSYSSGGRGSSSRGGGGGSYGSGGSFKGGSG 580
Query: 1607 KGSSLSA 1627
G S+
Sbjct: 581 SGGGYSS 587
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,637,017
Number of extensions: 1224509
Number of successful extensions: 9076
Number of sequences better than 1.0e-05: 96
Number of HSP's gapped: 8443
Number of HSP's successfully gapped: 116
Length of query: 680
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 574
Effective length of database: 8,704,850
Effective search space: 4996583900
Effective search space used: 4996583900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012439
(2041 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064340.1| keratin, type II cytoskeletal 71 [Mus musculus]. 750 0.0
Alignment gi|NP_997650.1| keratin, type II cytoskeletal 73 [Mus musculus]. 635 0.0
Alignment gi|NP_998893.1| keratin, type II cytoskeletal 72 [Mus musculus]. 555 e-158
Alignment gi|NP_032502.3| keratin, type II cytoskeletal 6A [Mus musculus]. 494 e-139
Alignment gi|NP_001028349.1| keratin, type II cytoskeletal 2 oral [Mus mu... 490 e-138
Alignment gi|NP_034799.2| keratin, type II cytoskeletal 6B [Mus musculus]. 488 e-138
Alignment gi|NP_579935.1| keratin, type II cytoskeletal 75 [Mus musculus]. 487 e-137
Alignment gi|NP_081287.1| keratin, type II cytoskeletal 5 [Mus musculus]. 484 e-136
Alignment gi|NP_808385.2| hypothetical protein LOC239673 [Mus musculus]. 479 e-135
Alignment gi|NP_032501.2| keratin, type II cytoskeletal 4 [Mus musculus]. 468 e-131
>ref|NP_064340.1| keratin, type II cytoskeletal 71 [Mus musculus].
Length = 524
Score = 750 bits (1936), Expect = 0.0
Identities = 394/475 (82%), Positives = 417/475 (87%)
Frame = +2
Query: 215 LYNLGGIRSISFNMANSTXXXXXXXXXXXXXXXXXXSMFGSVALXXXXXXXXXXXXIHQV 394
LY+LGG RSI+ NMA+ + S+FGSVAL IHQV
Sbjct: 47 LYSLGGGRSITLNMASGSGKNGGFGFGRNRASGFAGSIFGSVALGPVCPAVCPPGGIHQV 106
Query: 395 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 574
TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVL+TKWELL
Sbjct: 107 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLQTKWELL 166
Query: 575 QQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYEEEIN 754
QQLDLNNCKNNLEPILEG+IS +RKQLE LSGDRVRLDSELR+VRDVVEDYKK+YEEEIN
Sbjct: 167 QQLDLNNCKNNLEPILEGHISNMRKQLETLSGDRVRLDSELRNVRDVVEDYKKKYEEEIN 226
Query: 755 RRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHISDMSV 934
RRTAAENEFVLLKKDVDAAYANKVELQAKVD+MDQ+IKFF+CL+EAE+AQIQSHISDMSV
Sbjct: 227 RRTAAENEFVLLKKDVDAAYANKVELQAKVDTMDQDIKFFKCLFEAEMAQIQSHISDMSV 286
Query: 935 ILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK 1114
ILSMDNNR+L+LDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK
Sbjct: 287 ILSMDNNRNLDLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK 346
Query: 1115 NEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQAK 1294
NEI+ELTR IQR+RSEIEN KKQASNLETAIADAEQRGD+ALKDARAKLDELEGALHQAK
Sbjct: 347 NEITELTRFIQRLRSEIENAKKQASNLETAIADAEQRGDSALKDARAKLDELEGALHQAK 406
Query: 1295 EELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXXXXXY 1474
EELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGE+ SPV Y
Sbjct: 407 EELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEYSSPVSISIISSTSGSGGY 466
Query: 1475 GFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGSSLSAPSKK 1639
GFRPS+VSGGYVANS SCISGVCSVRGGE RSR S +DYKD L KGSSLS PSKK
Sbjct: 467 GFRPSTVSGGYVANSTSCISGVCSVRGGENRSRGSASDYKDTLTKGSSLSTPSKK 521
>ref|NP_997650.1| keratin, type II cytoskeletal 73 [Mus musculus].
Length = 539
Score = 635 bits (1638), Expect = 0.0
Identities = 343/490 (70%), Positives = 386/490 (78%), Gaps = 15/490 (3%)
Frame = +2
Query: 215 LYNLGGIRSISFNMANSTXXXXXXXXXXXXXXXXXXSMFGSVALXXXXXXXXXXXXIHQV 394
LY+L RSISFN+A+S+ SMFGS AL IHQV
Sbjct: 47 LYSLRSPRSISFNVASSSGRTGGYGFGRNRASGFAGSMFGSGALGPSNPSLCLPGGIHQV 106
Query: 395 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 574
TVN+SLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVL+TKWELL
Sbjct: 107 TVNKSLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLQTKWELL 166
Query: 575 QQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYEEEIN 754
QQLDL+NC+ NLEP+ E +IS+L+KQL++LSGDRVRLDSELR +RD VED KKRYEEEIN
Sbjct: 167 QQLDLSNCRRNLEPVYEAHISSLQKQLDSLSGDRVRLDSELRGMRDAVEDCKKRYEEEIN 226
Query: 755 RRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHISDMSV 934
+RT AENEFV+LKKDVDAAY +KVELQAKVD++D EIKF +CLYE EI Q+QSHISD SV
Sbjct: 227 KRTTAENEFVVLKKDVDAAYMSKVELQAKVDALDGEIKFLKCLYEGEITQMQSHISDTSV 286
Query: 935 ILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK 1114
+LSMDNNR+L+LDSII EVRAQYE+IALKSKAEAE +YQTKFQELQLAAGRHGDDLK+T+
Sbjct: 287 VLSMDNNRNLDLDSIIAEVRAQYEDIALKSKAEAEMVYQTKFQELQLAAGRHGDDLKHTR 346
Query: 1115 NEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQAK 1294
NEISELTRLIQR+RSEIE+VKKQ SNLETAIADAEQRGD ALKDARAKLDELE ALHQAK
Sbjct: 347 NEISELTRLIQRLRSEIESVKKQCSNLETAIADAEQRGDCALKDARAKLDELERALHQAK 406
Query: 1295 EELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEF-------------PSPVX 1435
EELARMLRE+QELMS+KLALD+EIATYRKLLE EECRMSGE P V
Sbjct: 407 EELARMLREHQELMSMKLALDIEIATYRKLLEGEECRMSGEHTSAVSISVISSSAPGTVG 466
Query: 1436 XXXXXXXXXXXXYGFRPSSVSGGYVANSGSCI--SGVCSVRGGETRSRSSTTDYKDALGK 1609
YG+R SSV+GGY SG C+ SG CS RG S +++K+ GK
Sbjct: 467 AGTSFGFSSAGTYGYRQSSVAGGYGILSGGCVTGSGNCSPRGDTKNRLGSASEFKEVSGK 526
Query: 1610 GSSLSAPSKK 1639
+L +PSKK
Sbjct: 527 TLALGSPSKK 536
>ref|NP_998893.1| keratin, type II cytoskeletal 72 [Mus musculus].
Length = 520
Score = 555 bits (1431), Expect = e-158
Identities = 292/370 (78%), Positives = 324/370 (87%)
Frame = +2
Query: 323 SMFGSVALXXXXXXXXXXXXIHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKF 502
++FGS L I QV VN+SLLAPLNVELDPEIQKVRAQEREQIKALNNKF
Sbjct: 86 TVFGSAGLGPTCPSVCPPGGIPQVVVNKSLLAPLNVELDPEIQKVRAQEREQIKALNNKF 145
Query: 503 ASFIDKVRFLEQQNQVLETKWELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVR 682
ASFIDKVRFLEQQNQVLETKWELLQQLDLNN K +LEP+ E YIS L+KQLE LSGDRVR
Sbjct: 146 ASFIDKVRFLEQQNQVLETKWELLQQLDLNNSKRSLEPVHESYISNLQKQLEILSGDRVR 205
Query: 683 LDSELRSVRDVVEDYKKRYEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQE 862
LDSELR++R+VVED KKRYE EINRRTAAENEFV+LKKDVDAAY NKVELQAKVDS+ +
Sbjct: 206 LDSELRNMREVVEDCKKRYEVEINRRTAAENEFVVLKKDVDAAYMNKVELQAKVDSLTDD 265
Query: 863 IKFFQCLYEAEIAQIQSHISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEA 1042
IKFF+ L+E EIAQ+QSHISD SVILSMDNNR L+LDSI+ EVRAQYEEIA+KSKAE E
Sbjct: 266 IKFFKVLFEGEIAQMQSHISDTSVILSMDNNRQLDLDSILAEVRAQYEEIAVKSKAETEN 325
Query: 1043 LYQTKFQELQLAAGRHGDDLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQ 1222
+YQ K QELQ AG+HGDDLK+TK+EI+E+ RLIQRI SEI N+KKQ SNLETAIADAEQ
Sbjct: 326 MYQCKIQELQATAGQHGDDLKHTKSEITEINRLIQRIHSEIGNMKKQCSNLETAIADAEQ 385
Query: 1223 RGDNALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEEC 1402
RGD ALKDARAKLD+LEGAL QAKEELARMLRE+QELM++KLALDMEIATYRKLLESEE
Sbjct: 386 RGDCALKDARAKLDQLEGALQQAKEELARMLREHQELMNVKLALDMEIATYRKLLESEES 445
Query: 1403 RMSGEFPSPV 1432
RM+GE+P+ V
Sbjct: 446 RMAGEYPNSV 455
>ref|NP_032502.3| keratin, type II cytoskeletal 6A [Mus musculus].
Length = 553
Score = 494 bits (1272), Expect = e-139
Identities = 254/411 (61%), Positives = 323/411 (78%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VT+N+SLL PLN+++DP IQ+VR +EREQIK LNNKFASFIDKVRFLEQQN+VL+TK
Sbjct: 124 IQEVTINQSLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTK 183
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ + NLEP+ E YIS LR+QL+++ G+R RLDSELR+++D VEDYK +YE
Sbjct: 184 WALLQEQGTKTVRQNLEPMFEQYISNLRRQLDSIIGERGRLDSELRNMQDTVEDYKSKYE 243
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
+EIN+RTAAENEFV LKKDVDAAY NKVELQAK DS+ +I F + LYEAE++Q+Q+HIS
Sbjct: 244 DEINKRTAAENEFVTLKKDVDAAYMNKVELQAKADSLTDDINFLRALYEAELSQMQTHIS 303
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR L+LDSII EV+AQYE+IA +S+AEAE+ YQTK++ELQ+ AGRHGDDL
Sbjct: 304 DTSVVLSMDNNRSLDLDSIIAEVKAQYEDIAQRSRAEAESWYQTKYEELQVTAGRHGDDL 363
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+NTK EI+E+ R+IQR+RSEI++VKKQ +NL+ AIADAEQRG+ ALKDAR KL+ LE AL
Sbjct: 364 RNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQRGEMALKDARGKLEGLEDAL 423
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AK+++AR+L+EYQELM++KLALD+EIATYRKLLE EECR++GE PV
Sbjct: 424 QKAKQDMARLLKEYQELMNVKLALDVEIATYRKLLEGEECRLNGEGVGPVNISVV----- 478
Query: 1463 XXXYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGS 1615
S+VS GY + G+ S + GG + S SS+ GS
Sbjct: 479 -------QSTVSSGYGSAGGA--SSSLGLGGGSSYSYSSSHGLGGGFSAGS 520
>ref|NP_001028349.1| keratin, type II cytoskeletal 2 oral [Mus musculus].
Length = 594
Score = 490 bits (1262), Expect = e-138
Identities = 262/426 (61%), Positives = 324/426 (76%), Gaps = 7/426 (1%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VT+N+SLL PLNVE+DP+I +V+AQEREQIK LNNKFASFIDKVRFLEQQN+VLETK
Sbjct: 137 IQEVTINQSLLQPLNVEIDPQIGQVKAQEREQIKTLNNKFASFIDKVRFLEQQNKVLETK 196
Query: 563 WELLQQLDLNNCKN--NLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKR 736
WELLQQ + + NLEP E YIS LRKQL++L G + L+ EL+S++D+VED+KK+
Sbjct: 197 WELLQQQTIRSGSGPQNLEPFFESYISCLRKQLDSLLGAKGSLEGELKSMQDLVEDFKKK 256
Query: 737 YEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSH 916
YEEEINRRTAAENEFV LKKDVD A+ NKVELQAKVDS+ EI F + LY+ E++QIQSH
Sbjct: 257 YEEEINRRTAAENEFVGLKKDVDGAFMNKVELQAKVDSLTDEINFLRTLYDMELSQIQSH 316
Query: 917 ISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGD 1096
+SD SV+LSMDNNR L+LDSII EV+AQYE+IA KSKAEAEALYQTK ELQ AGRHGD
Sbjct: 317 VSDTSVVLSMDNNRCLDLDSIIAEVKAQYEDIAQKSKAEAEALYQTKLGELQTTAGRHGD 376
Query: 1097 DLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEG 1276
DL++TK+EI +L R+IQR+R+EIENVKKQ +N++T+IA+AEQRG+ ALKDA K +L+
Sbjct: 377 DLRSTKSEIMDLNRMIQRLRAEIENVKKQNTNMQTSIAEAEQRGERALKDADTKFQDLQV 436
Query: 1277 ALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXX 1456
AL +AKE++AR+L+EYQELM++KLALD+EIATYRKLLE EECR+SGEF + V
Sbjct: 437 ALQKAKEDMARLLKEYQELMNVKLALDVEIATYRKLLEGEECRLSGEFQNAVSISVVS-- 494
Query: 1457 XXXXXYGFRPSSVSGGYVANSGSCISGVCSVRGG-----ETRSRSSTTDYKDALGKGSSL 1621
+S SG + GS G S R G +R SS LG G S+
Sbjct: 495 ------NVTSTSSSGSFRGTGGSNYGGDSSGRSGGSSSSSSRGSSSRGSSGSRLGSGGSI 548
Query: 1622 SAPSKK 1639
S ++
Sbjct: 549 SVSQQR 554
>ref|NP_034799.2| keratin, type II cytoskeletal 6B [Mus musculus].
Length = 554
Score = 488 bits (1256), Expect = e-138
Identities = 256/418 (61%), Positives = 325/418 (77%), Gaps = 1/418 (0%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VT+N++LL PLNV++DP IQ+VR +EREQIK LNNKFASFIDKVRFLEQQN+VL+TK
Sbjct: 124 IQEVTINQNLLTPLNVQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTK 183
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ + NLEP+ E YIS LR+QL+++ G+R RLDSELR+++D VEDYK +YE
Sbjct: 184 WALLQEQGTKTVRQNLEPMFEQYISNLRRQLDSIIGERGRLDSELRNMQDTVEDYKSKYE 243
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
+EIN+RT AENEFV +KKDVDAAY KVELQAK DS+ EI F + +YEAE++Q+Q+HIS
Sbjct: 244 DEINKRTKAENEFVTVKKDVDAAYMTKVELQAKADSLADEINFLRVIYEAELSQMQTHIS 303
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR L+LDSII EV+AQYE+IA +S+AEAE+ YQTK++ELQ+ AGRHGDDL
Sbjct: 304 DTSVVLSMDNNRSLDLDSIIAEVKAQYEDIAQRSRAEAESWYQTKYEELQVTAGRHGDDL 363
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+NTK EI+E+ R+IQR+RSEI++VKKQ +NL+ AIADAEQRG+ ALKDAR KL+ LE AL
Sbjct: 364 RNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQRGEMALKDARGKLEGLEDAL 423
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AK+E+AR+L+EYQELM++KLALD+EIATYRKLLE EECR++GE PV
Sbjct: 424 QKAKQEMARLLKEYQELMNVKLALDVEIATYRKLLEGEECRLNGEGVGPVNISVV----- 478
Query: 1463 XXXYGFRPSSVSGGYVANSGSCIS-GVCSVRGGETRSRSSTTDYKDALGKGSSLSAPS 1633
S+VS GY + G+ S G+ GG SS+ Y + G G SA S
Sbjct: 479 -------QSTVSSGYGSAGGASSSLGL----GG-----SSSYSYGSSHGLGGGFSAGS 520
>ref|NP_579935.1| keratin, type II cytoskeletal 75 [Mus musculus].
Length = 551
Score = 487 bits (1253), Expect = e-137
Identities = 253/418 (60%), Positives = 329/418 (78%), Gaps = 5/418 (1%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN+SLL PLN+++DP IQ+VR +EREQIK LNNKFASFIDKVRFLEQQN+VLETK
Sbjct: 122 IQEVTVNQSLLTPLNLQIDPTIQRVRKEEREQIKTLNNKFASFIDKVRFLEQQNKVLETK 181
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ + NLEP + Y++ LR+QL+ ++ +R RLD+ELR++++VVED+K RYE
Sbjct: 182 WNLLQEQGSRTVRQNLEPFFDTYVNDLRRQLDGITAERGRLDAELRNMQEVVEDFKVRYE 241
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
+EIN+R AAENEFV LKKDVD+AY NKVEL+AKVDS+ +I F++ +YEAE++Q+Q+ +S
Sbjct: 242 DEINKRAAAENEFVGLKKDVDSAYMNKVELEAKVDSLTDQINFYRMIYEAELSQMQNQVS 301
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR L+LDSII EV+AQYE+IA +S+AEAE+ YQTK++ELQ+ AGRHGDDL
Sbjct: 302 DTSVVLSMDNNRSLDLDSIIAEVKAQYEDIANRSRAEAESWYQTKYEELQVTAGRHGDDL 361
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+NTK EISE+ R+IQR+RSEI+ VKKQ S+L+TAI+DAEQRG+ ALKDARAKL ELE AL
Sbjct: 362 RNTKQEISEMNRMIQRLRSEIDAVKKQCSSLQTAISDAEQRGELALKDARAKLMELEDAL 421
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AK+++AR+LREYQELM++KLALD+EIATYRKLLE EECR+SGE SPV
Sbjct: 422 QKAKQDMARLLREYQELMNVKLALDVEIATYRKLLEGEECRLSGEGVSPVNISVVTSTVS 481
Query: 1463 XXXYGFRPSSVSGGYVANSGS-----CISGVCSVRGGETRSRSSTTDYKDALGKGSSL 1621
G +++ GG + G+ SG S+ G S +TT + +G GSS+
Sbjct: 482 SGYGG--GANIGGGSLGLGGNSGYSFTTSGGHSLGTGLGGSGFTTTSSRGPVGSGSSI 537
>ref|NP_081287.1| keratin, type II cytoskeletal 5 [Mus musculus].
Length = 580
Score = 484 bits (1245), Expect = e-136
Identities = 251/417 (60%), Positives = 318/417 (76%), Gaps = 3/417 (0%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN++LL PLN+++DP IQ+VR +EREQIK LNNKFASFIDKVRFLEQQN+VL+TK
Sbjct: 134 IQEVTVNQNLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTK 193
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ K NL+P+ E YI+ LR+QL+ + G+R RLDSELR+++D+VEDYK +YE
Sbjct: 194 WALLQEQGTKTIKQNLDPLFEQYINNLRRQLDGVLGERGRLDSELRNMQDLVEDYKNKYE 253
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
+EIN+RT AENEFV+LKKDVDAAY NKVEL+A+VD++ EI F + ++AE++Q+Q+H+S
Sbjct: 254 DEINKRTTAENEFVMLKKDVDAAYMNKVELEARVDALMDEINFMKMFFDAELSQMQTHVS 313
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR L+LDSII EV+AQYE+IA +S+ EAE+ YQTK++ELQ AGRHGDDL
Sbjct: 314 DTSVVLSMDNNRSLDLDSIIAEVKAQYEDIANRSRTEAESWYQTKYEELQQTAGRHGDDL 373
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+NTK+EISE+ R+IQR+RSEI+NVKKQ +NL+ AIA+AEQRG+ ALKDAR KL ELE AL
Sbjct: 374 RNTKHEISEMNRMIQRLRSEIDNVKKQCANLQNAIAEAEQRGELALKDARNKLTELEEAL 433
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AK+++AR+LREYQELM+ KLALD+EIATYRKLLE EECR+SGE PV
Sbjct: 434 QKAKQDMARLLREYQELMNTKLALDVEIATYRKLLEGEECRLSGEGVGPVNISVVTNSVS 493
Query: 1463 XXXYGFRPSSVSGGYVANSGSCISGVCS---VRGGETRSRSSTTDYKDALGKGSSLS 1624
G V G+ GS +G RGG LG GS LS
Sbjct: 494 SGYGGGSSIGVGSGFGGGLGSGFAGGLGPRFTRGG------------GGLGLGSGLS 538
>ref|NP_808385.2| hypothetical protein LOC239673 [Mus musculus].
Length = 538
Score = 479 bits (1233), Expect = e-135
Identities = 252/418 (60%), Positives = 321/418 (76%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
IH+VTVN+SLL PL++E+DP +Q+VR +E+EQIK LNNKFASFIDKVRFLEQQN+VLETK
Sbjct: 115 IHEVTVNQSLLTPLHLEIDPSLQRVRKEEKEQIKTLNNKFASFIDKVRFLEQQNKVLETK 174
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ + NLEP+ E YI+ LR+QLE L G+R RL++EL+S++DVVED+K +YE
Sbjct: 175 WSLLQEH--KTTRTNLEPMFEAYITNLRRQLECLGGERSRLETELKSMQDVVEDFKNKYE 232
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
EEI+RRTAAENEFV+LKKDVDAAY NKVEL+AKV+++ EI F + +EAE+AQ+Q+ IS
Sbjct: 233 EEIHRRTAAENEFVVLKKDVDAAYMNKVELEAKVEALMDEINFLRAFFEAELAQLQAQIS 292
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
+ SV+LSMDNNR LNLDSII EV+AQYE+IA +S+AEAE+ YQTK++ELQ +AG+ GDDL
Sbjct: 293 ETSVVLSMDNNRSLNLDSIIAEVKAQYEDIANRSRAEAESWYQTKYEELQRSAGQRGDDL 352
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+ TK EISEL R +QR+RSEI+N+KKQ + L+ +IADAEQRG+ ALKDA+ KL ELE AL
Sbjct: 353 RTTKMEISELNRAMQRLRSEIDNLKKQCATLQASIADAEQRGELALKDAKNKLAELEDAL 412
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AK+++AR LREYQELM++KLALD+EIATYRKLLE EECR++GE V
Sbjct: 413 QKAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEECRLTGEGVGAVNISVVSSSGG 472
Query: 1463 XXXYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGSSLSAPSK 1636
G VSGG + G SG+C GG S+T + G SS+ SK
Sbjct: 473 TGYSGGGGLCVSGGGYSGGGYSGSGLC--YGGGGSGGFSSTSGRSVSGSSSSMRIVSK 528
>ref|NP_032501.2| keratin, type II cytoskeletal 4 [Mus musculus].
Length = 525
Score = 468 bits (1203), Expect = e-131
Identities = 247/394 (62%), Positives = 303/394 (76%), Gaps = 3/394 (0%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VT+N+SLL PL VE+DPEIQK+R EREQIK LNNKFASFIDKVRFLEQQN+VLETK
Sbjct: 118 IQEVTINQSLLTPLQVEIDPEIQKIRTAEREQIKTLNNKFASFIDKVRFLEQQNKVLETK 177
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQQ +L+P E YI+ LRK L+ LS D+ RL SEL+ ++D VED+K +YE
Sbjct: 178 WNLLQQQTTTTSPKSLDPFFETYINALRKNLDTLSNDKGRLQSELKMMQDSVEDFKTKYE 237
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
EEIN+RTAAEN+FV+LKKDVDAAY KVEL+AK++S+ EI F + LYEAE+AQ+Q+H+S
Sbjct: 238 EEINKRTAAENDFVVLKKDVDAAYMIKVELEAKMESLKDEINFTRVLYEAELAQMQTHVS 297
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR+L+LD II EVRAQYE+IA KSKAE E+ YQ K Q+LQ++A +HGD L
Sbjct: 298 DTSVVLSMDNNRNLDLDGIIAEVRAQYEDIARKSKAEVESWYQIKVQQLQMSADQHGDSL 357
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
K TKNEISEL R+IQR+R+EIEN+KKQ+ L+ ++ADAEQRG+ ALKDA +K ELE AL
Sbjct: 358 KTTKNEISELNRMIQRLRAEIENIKKQSQTLQASVADAEQRGELALKDAYSKRAELETAL 417
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AKE+LAR+LR+YQ LM++KLALD+EIATYRKLLE EECRMSGE S V
Sbjct: 418 QKAKEDLARLLRDYQALMNVKLALDVEIATYRKLLEGEECRMSGECKSAVSI-------- 469
Query: 1463 XXXYGFRPSSVSGGYVANSGSCI---SGVCSVRG 1555
SV GG + GS + SG CS G
Sbjct: 470 ---------SVVGGSASIGGSGLGLGSGFCSGSG 494
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,008,839
Number of extensions: 1553901
Number of successful extensions: 10452
Number of sequences better than 1.0e-05: 122
Number of HSP's gapped: 9685
Number of HSP's successfully gapped: 138
Length of query: 680
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 572
Effective length of database: 12,373,671
Effective search space: 7077739812
Effective search space used: 7077739812
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012439
(2041 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_258259.1| keratin, type II cytoskeletal 71 [Homo sapiens]. 763 0.0
Alignment gi|NP_778238.1| keratin, type II cytoskeletal 73 [Homo sapiens]. 665 0.0
Alignment gi|NP_778223.2| keratin, type II cytoskeletal 74 [Homo sapiens]. 615 e-176
Alignment gi|NP_001139697.1| keratin, type II cytoskeletal 72 isoform 1 [... 590 e-168
Alignment gi|NP_542785.1| keratin, type II cytoskeletal 72 isoform 1 [Hom... 590 e-168
Alignment gi|NP_002263.3| keratin, type II cytoskeletal 4 [Homo sapiens]. 498 e-140
Alignment gi|NP_005545.1| keratin, type II cytoskeletal 6A [Homo sapiens]. 491 e-139
Alignment gi|NP_476429.2| keratin, type II cytoskeletal 3 [Homo sapiens]. 489 e-138
Alignment gi|NP_000415.2| keratin, type II cytoskeletal 5 [Homo sapiens]. 489 e-138
Alignment gi|NP_056932.2| keratin, type II cytoskeletal 2 oral [Homo sapi... 488 e-138
>ref|NP_258259.1| keratin, type II cytoskeletal 71 [Homo sapiens].
Length = 523
Score = 763 bits (1969), Expect = 0.0
Identities = 404/475 (85%), Positives = 418/475 (88%)
Frame = +2
Query: 215 LYNLGGIRSISFNMANSTXXXXXXXXXXXXXXXXXXSMFGSVALXXXXXXXXXXXXIHQV 394
LY+LGG+RS+ N+A+ + SMFGSVAL IHQV
Sbjct: 48 LYSLGGVRSL--NVASGSGKSGGYGFGRGRASGFAGSMFGSVALGPVCPTVCPPGGIHQV 105
Query: 395 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 574
TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL
Sbjct: 106 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 165
Query: 575 QQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYEEEIN 754
QQLDLNNCKNNLEPILEGYIS LRKQLE LSGDRVRLDSELR+VRDVVEDYKKRYEEEIN
Sbjct: 166 QQLDLNNCKNNLEPILEGYISNLRKQLETLSGDRVRLDSELRNVRDVVEDYKKRYEEEIN 225
Query: 755 RRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHISDMSV 934
+RTAAENEFVLLKKDVDAAYANKVELQAKV+SMDQEIKFF+CL+EAEI QIQSHISDMSV
Sbjct: 226 KRTAAENEFVLLKKDVDAAYANKVELQAKVESMDQEIKFFRCLFEAEITQIQSHISDMSV 285
Query: 935 ILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK 1114
ILSMDNNR+L+LDSIIDEVR QYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK
Sbjct: 286 ILSMDNNRNLDLDSIIDEVRTQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK 345
Query: 1115 NEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQAK 1294
NEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQAK
Sbjct: 346 NEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQAK 405
Query: 1295 EELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXXXXXY 1474
EELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPV Y
Sbjct: 406 EELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVSISIISSTSGGSVY 465
Query: 1475 GFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGSSLSAPSKK 1639
GFRPS VSGGYVANS +CISGVCSVRGGE RSR S DYKD LGKGSSLSAPSKK
Sbjct: 466 GFRPSMVSGGYVANSSNCISGVCSVRGGEGRSRGSANDYKDTLGKGSSLSAPSKK 520
>ref|NP_778238.1| keratin, type II cytoskeletal 73 [Homo sapiens].
Length = 540
Score = 665 bits (1716), Expect = 0.0
Identities = 358/490 (73%), Positives = 394/490 (80%), Gaps = 15/490 (3%)
Frame = +2
Query: 215 LYNLGGIRSISFNMANSTXXXXXXXXXXXXXXXXXXSMFGSVALXXXXXXXXXXXXIHQV 394
LY+LGG RSISFN+A+ + SMFGSVAL IHQV
Sbjct: 48 LYSLGGARSISFNVASGSGWAGGYGFGRGRASGFAGSMFGSVALGSVCPSLCPPGGIHQV 107
Query: 395 TVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELL 574
T+N+SLLAPLNVELDPEIQKVRAQEREQIK LNNKFASFIDKVRFLEQQNQVLETKWELL
Sbjct: 108 TINKSLLAPLNVELDPEIQKVRAQEREQIKVLNNKFASFIDKVRFLEQQNQVLETKWELL 167
Query: 575 QQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYEEEIN 754
QQLDLNNCKNNLEPILEGYIS LRKQLE LSGDRVRLDSELRSVR+VVEDYKKRYEEEIN
Sbjct: 168 QQLDLNNCKNNLEPILEGYISNLRKQLETLSGDRVRLDSELRSVREVVEDYKKRYEEEIN 227
Query: 755 RRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHISDMSV 934
+RT AENEFV+LKKDVDAAY +KVELQAKVD++D EIKFF+CLYE E AQIQSHISD S+
Sbjct: 228 KRTTAENEFVVLKKDVDAAYTSKVELQAKVDALDGEIKFFKCLYEGETAQIQSHISDTSI 287
Query: 935 ILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTK 1114
ILSMDNNR+L+LDSII EVRAQYEEIA KSKAEAEALYQTKFQELQLAAGRHGDDLK+TK
Sbjct: 288 ILSMDNNRNLDLDSIIAEVRAQYEEIARKSKAEAEALYQTKFQELQLAAGRHGDDLKHTK 347
Query: 1115 NEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQAK 1294
NEISELTRLIQR+RSEIE+VKKQ +NLETAIADAEQRGD ALKDARAKLDELEGAL QAK
Sbjct: 348 NEISELTRLIQRLRSEIESVKKQCANLETAIADAEQRGDCALKDARAKLDELEGALQQAK 407
Query: 1295 EELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPV-------------X 1435
EELARMLREYQEL+S+KL+LD+EIATYRKLLE EECRMSGE+ + V
Sbjct: 408 EELARMLREYQELLSVKLSLDIEIATYRKLLEGEECRMSGEYTNSVSISVINSSMAGMAG 467
Query: 1436 XXXXXXXXXXXXYGFRPSSVSGGYVANSGSCI--SGVCSVRGGETRSRSSTTDYKDALGK 1609
YG+ PSSVSGGY G C+ SG CS RG S ++++D+ GK
Sbjct: 468 TGAGFGFSNAGTYGYWPSSVSGGYSMLPGGCVTGSGNCSPRGEARTRLGSASEFRDSQGK 527
Query: 1610 GSSLSAPSKK 1639
+LS+P+KK
Sbjct: 528 TLALSSPTKK 537
>ref|NP_778223.2| keratin, type II cytoskeletal 74 [Homo sapiens].
Length = 529
Score = 615 bits (1587), Expect = e-176
Identities = 343/482 (71%), Positives = 376/482 (78%), Gaps = 7/482 (1%)
Frame = +2
Query: 215 LYNLGGIRSISFNMANSTXXXXXXXXXXXXXXXXXX------SMFGSVALXXXXXXXXXX 376
LY+LGG R ISFN+A SMFGSVAL
Sbjct: 50 LYSLGGNRRISFNVAGGGVRAGGYGFRPGSGYGGGRASGFAGSMFGSVALGPACLSVCPP 109
Query: 377 XXIHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLE 556
IHQVTVN+SLLAPLNVELDPEIQKVRAQEREQIK LN+KFASFIDKVRFLEQQNQVLE
Sbjct: 110 GGIHQVTVNKSLLAPLNVELDPEIQKVRAQEREQIKVLNDKFASFIDKVRFLEQQNQVLE 169
Query: 557 TKWELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKR 736
TKWELLQQLDLNNCK NLEPILEGYIS LRKQLE LSGDRVRLDSELRS+RD+VEDYKKR
Sbjct: 170 TKWELLQQLDLNNCKKNLEPILEGYISNLRKQLETLSGDRVRLDSELRSMRDLVEDYKKR 229
Query: 737 YEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSH 916
YE EINRRT AENEFV+LKKD DAAYA KVELQAKVDS+D+EIKF +CLY+AEIAQIQ+H
Sbjct: 230 YEVEINRRTTAENEFVVLKKDADAAYAVKVELQAKVDSLDKEIKFLKCLYDAEIAQIQTH 289
Query: 917 ISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGD 1096
S+ SVILSMDNNRDL+LDSII EVR YEEIALKSKAEAEALYQTK QELQLAA RHGD
Sbjct: 290 ASETSVILSMDNNRDLDLDSIIAEVRMHYEEIALKSKAEAEALYQTKIQELQLAASRHGD 349
Query: 1097 DLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEG 1276
DLK+T++E+ EL RLIQRIR EI NVKKQ ++LETAIADAEQRGDNALKDA+AKLDELEG
Sbjct: 350 DLKHTRSEMVELNRLIQRIRCEIGNVKKQRASLETAIADAEQRGDNALKDAQAKLDELEG 409
Query: 1277 ALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXX 1456
ALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLE EECRMSGE PS V
Sbjct: 410 ALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLEGEECRMSGENPSSVSISVISSS 469
Query: 1457 XXXXXYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSST-TDYKDALGKGSSLSAPS 1633
+ PSS A++ + SG S + G+T++ + D KD GK + S P+
Sbjct: 470 SYSYHH---PSSAGVDLGASAVAGSSG--STQSGQTKTTEARGGDLKDTQGKSTPASIPA 524
Query: 1634 KK 1639
+K
Sbjct: 525 RK 526
>ref|NP_001139697.1| keratin, type II cytoskeletal 72 isoform 1 [Homo sapiens].
Length = 511
Score = 590 bits (1521), Expect = e-168
Identities = 319/438 (72%), Positives = 351/438 (80%), Gaps = 1/438 (0%)
Frame = +2
Query: 329 FGSVALXXXXXXXXXXXXIHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFAS 508
FGS L I QVTVN+SLLAPLNVE+DPEIQ+VRAQEREQIKALNNKFAS
Sbjct: 79 FGSAGLGPKCPSVCPPGGIPQVTVNKSLLAPLNVEMDPEIQRVRAQEREQIKALNNKFAS 138
Query: 509 FIDKVRFLEQQNQVLETKWELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLD 688
FIDKVRFLEQQNQVLETKW LLQQLDLNNC+ NLEPI EGYIS L+KQLE LSGD VRLD
Sbjct: 139 FIDKVRFLEQQNQVLETKWNLLQQLDLNNCRKNLEPIYEGYISNLQKQLEMLSGDGVRLD 198
Query: 689 SELRSVRDVVEDYKKRYEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIK 868
SELR+++D+VEDYKKRYE EINRRTAAENEFV+LKKDVDAAY NKVELQAKVDS+ EIK
Sbjct: 199 SELRNMQDLVEDYKKRYEVEINRRTAAENEFVVLKKDVDAAYMNKVELQAKVDSLTDEIK 258
Query: 869 FFQCLYEAEIAQIQSHISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALY 1048
FF+CLYE EI QIQSHISD S++LSMDNNRDL+LDSII EVRAQYEEIALKSKAEAE LY
Sbjct: 259 FFKCLYEGEITQIQSHISDTSIVLSMDNNRDLDLDSIIAEVRAQYEEIALKSKAEAETLY 318
Query: 1049 QTKFQELQLAAGRHGDDLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRG 1228
QTK QELQ+ AG+HGDDLK TK EISEL RLIQRIRSEI NVKKQ ++LETAIADAEQRG
Sbjct: 319 QTKIQELQVTAGQHGDDLKLTKAEISELNRLIQRIRSEIGNVKKQCADLETAIADAEQRG 378
Query: 1229 DNALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRM 1408
D ALKDARAKLDELEGALHQAKEELARMLREYQEL+SLKLALDMEIATYRKLLESEECRM
Sbjct: 379 DCALKDARAKLDELEGALHQAKEELARMLREYQELVSLKLALDMEIATYRKLLESEECRM 438
Query: 1409 SGEFPSPVXXXXXXXXXXXXXYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSST-T 1585
SGE+P+ V + G+ G+ S + +++ S +
Sbjct: 439 SGEYPNSVSISVIS--------STNAGAGGAGFSMGFGASSSYSYKTAAADVKTKGSCGS 490
Query: 1586 DYKDALGKGSSLSAPSKK 1639
+ KD L K S S +KK
Sbjct: 491 ELKDPLAKTSGSSCATKK 508
>ref|NP_542785.1| keratin, type II cytoskeletal 72 isoform 1 [Homo sapiens].
Length = 511
Score = 590 bits (1521), Expect = e-168
Identities = 319/438 (72%), Positives = 351/438 (80%), Gaps = 1/438 (0%)
Frame = +2
Query: 329 FGSVALXXXXXXXXXXXXIHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFAS 508
FGS L I QVTVN+SLLAPLNVE+DPEIQ+VRAQEREQIKALNNKFAS
Sbjct: 79 FGSAGLGPKCPSVCPPGGIPQVTVNKSLLAPLNVEMDPEIQRVRAQEREQIKALNNKFAS 138
Query: 509 FIDKVRFLEQQNQVLETKWELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLD 688
FIDKVRFLEQQNQVLETKW LLQQLDLNNC+ NLEPI EGYIS L+KQLE LSGD VRLD
Sbjct: 139 FIDKVRFLEQQNQVLETKWNLLQQLDLNNCRKNLEPIYEGYISNLQKQLEMLSGDGVRLD 198
Query: 689 SELRSVRDVVEDYKKRYEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIK 868
SELR+++D+VEDYKKRYE EINRRTAAENEFV+LKKDVDAAY NKVELQAKVDS+ EIK
Sbjct: 199 SELRNMQDLVEDYKKRYEVEINRRTAAENEFVVLKKDVDAAYMNKVELQAKVDSLTDEIK 258
Query: 869 FFQCLYEAEIAQIQSHISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALY 1048
FF+CLYE EI QIQSHISD S++LSMDNNRDL+LDSII EVRAQYEEIALKSKAEAE LY
Sbjct: 259 FFKCLYEGEITQIQSHISDTSIVLSMDNNRDLDLDSIIAEVRAQYEEIALKSKAEAETLY 318
Query: 1049 QTKFQELQLAAGRHGDDLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRG 1228
QTK QELQ+ AG+HGDDLK TK EISEL RLIQRIRSEI NVKKQ ++LETAIADAEQRG
Sbjct: 319 QTKIQELQVTAGQHGDDLKLTKAEISELNRLIQRIRSEIGNVKKQCADLETAIADAEQRG 378
Query: 1229 DNALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRM 1408
D ALKDARAKLDELEGALHQAKEELARMLREYQEL+SLKLALDMEIATYRKLLESEECRM
Sbjct: 379 DCALKDARAKLDELEGALHQAKEELARMLREYQELVSLKLALDMEIATYRKLLESEECRM 438
Query: 1409 SGEFPSPVXXXXXXXXXXXXXYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSST-T 1585
SGE+P+ V + G+ G+ S + +++ S +
Sbjct: 439 SGEYPNSVSISVIS--------STNAGAGGAGFSMGFGASSSYSYKTAAADVKTKGSCGS 490
Query: 1586 DYKDALGKGSSLSAPSKK 1639
+ KD L K S S +KK
Sbjct: 491 ELKDPLAKTSGSSCATKK 508
>ref|NP_002263.3| keratin, type II cytoskeletal 4 [Homo sapiens].
Length = 520
Score = 498 bits (1281), Expect = e-140
Identities = 273/463 (58%), Positives = 333/463 (71%), Gaps = 6/463 (1%)
Frame = +2
Query: 215 LYNLGGIRSISFNMANSTXXXXXXXXXXXXXXXXXXSMFGSVA-LXXXXXXXXXXXXIHQ 391
LYNL G +SIS ++A S GS + I +
Sbjct: 52 LYNLRGNKSISMSVAGSRQGACFGGAGGFGTGGFGGGFGGSFSGKGGPGFPVCPAGGIQE 111
Query: 392 VTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWEL 571
VT+N+SLL PL+VE+DPEIQKVR +EREQIK LNNKFASFIDKV+FLEQQN+VLETKW L
Sbjct: 112 VTINQSLLTPLHVEIDPEIQKVRTEEREQIKLLNNKFASFIDKVQFLEQQNKVLETKWNL 171
Query: 572 LQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYEEEI 751
LQQ NLEP+ E Y+S LRKQL+ L D+ RL SEL++++D VED+K +YEEEI
Sbjct: 172 LQQQTTTTSSKNLEPLFETYLSVLRKQLDTLGNDKGRLQSELKTMQDSVEDFKTKYEEEI 231
Query: 752 NRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHISDMS 931
N+RTAAEN+FV+LKKDVDAAY NKVEL+AKVDS++ EI F + LY+AE++Q+Q+H+SD S
Sbjct: 232 NKRTAAENDFVVLKKDVDAAYLNKVELEAKVDSLNDEINFLKVLYDAELSQMQTHVSDTS 291
Query: 932 VILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNT 1111
V+LSMDNNR+L+LDSII EVRAQYEEIA +SKAEAEALYQTK Q+LQ++ +HGD+LKNT
Sbjct: 292 VVLSMDNNRNLDLDSIIAEVRAQYEEIAQRSKAEAEALYQTKVQQLQISVDQHGDNLKNT 351
Query: 1112 KNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQA 1291
K+EI+EL R+IQR+R+EIEN+KKQ L+ ++ADAEQRG+NALKDA +K ELE AL QA
Sbjct: 352 KSEIAELNRMIQRLRAEIENIKKQCQTLQVSVADAEQRGENALKDAHSKRVELEAALQQA 411
Query: 1292 KEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXXXXX 1471
KEELARMLREYQELMS+KLALD+EIATYRKLLE EE RMSGE S V
Sbjct: 412 KEELARMLREYQELMSVKLALDIEIATYRKLLEGEEYRMSGECQSAVSISVVSGSTSTGG 471
Query: 1472 YGFRPSSVSG-----GYVANSGSCISGVCSVRGGETRSRSSTT 1585
S SG G+ + SGS SV G + STT
Sbjct: 472 ISGGLGSGSGFGLSSGFGSGSGSGFGFGGSVSGSSSSKIISTT 514
>ref|NP_005545.1| keratin, type II cytoskeletal 6A [Homo sapiens].
Length = 564
Score = 491 bits (1265), Expect = e-139
Identities = 256/420 (60%), Positives = 327/420 (77%), Gaps = 19/420 (4%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN+SLL PLN+++DP IQ+VRA+EREQIK LNNKFASFIDKVRFLEQQN+VLETK
Sbjct: 135 IQEVTVNQSLLTPLNLQIDPTIQRVRAEEREQIKTLNNKFASFIDKVRFLEQQNKVLETK 194
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ + NLEP+ E YI+ LR+QL+++ G+R RLDSELR ++D+VED+K +YE
Sbjct: 195 WTLLQEQGTKTVRQNLEPLFEQYINNLRRQLDSIVGERGRLDSELRGMQDLVEDFKNKYE 254
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
+EIN+RTAAENEFV LKKDVDAAY NKVELQAK D++ EI F + LY+AE++Q+Q+HIS
Sbjct: 255 DEINKRTAAENEFVTLKKDVDAAYMNKVELQAKADTLTDEINFLRALYDAELSQMQTHIS 314
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR+L+LDSII EV+AQYEEIA +S+AEAE+ YQTK++ELQ+ AGRHGDDL
Sbjct: 315 DTSVVLSMDNNRNLDLDSIIAEVKAQYEEIAQRSRAEAESWYQTKYEELQVTAGRHGDDL 374
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+NTK EI+E+ R+IQR+RSEI++VKKQ +NL+ AIADAEQRG+ ALKDA+ KL+ LE AL
Sbjct: 375 RNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQRGEMALKDAKNKLEGLEDAL 434
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGE---------FPSPVX 1435
+AK++LAR+L+EYQELM++KLALD+EIATYRKLLE EECR++GE S V
Sbjct: 435 QKAKQDLARLLKEYQELMNVKLALDVEIATYRKLLEGEECRLNGEGVGQVNISVVQSTVS 494
Query: 1436 XXXXXXXXXXXXYGFRPSS---------VSGGYVANSGSCI-SGVCSVRGGETRSRSSTT 1585
G S V GG+ ++SG I G+ SV GG + + +TT
Sbjct: 495 SGYGGASGVGSGLGLGGGSSYSYGSGLGVGGGFSSSSGRAIGGGLSSVGGGSSTIKYTTT 554
>ref|NP_476429.2| keratin, type II cytoskeletal 3 [Homo sapiens].
Length = 628
Score = 489 bits (1260), Expect = e-138
Identities = 258/394 (65%), Positives = 312/394 (79%), Gaps = 2/394 (0%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VT+N+SLL PLNVE+DP+I +V+AQEREQIK LNNKFASFIDKVRFLEQQN+VLETK
Sbjct: 170 IQEVTINQSLLQPLNVEIDPQIGQVKAQEREQIKTLNNKFASFIDKVRFLEQQNKVLETK 229
Query: 563 WELLQQLDLNNCK--NNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKR 736
W LLQQ ++ NNLEP+ E +I+ LR L+ + G+R RLDSEL+++ D+VED+KK+
Sbjct: 230 WNLLQQQGTSSISGTNNLEPLFENHINYLRSYLDNILGERGRLDSELKNMEDLVEDFKKK 289
Query: 737 YEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSH 916
YE+EIN+RTAAENEFV LKKDVD+AY NKVELQAKVD++ EI F + LY+AE++Q+QSH
Sbjct: 290 YEDEINKRTAAENEFVTLKKDVDSAYMNKVELQAKVDALIDEIDFLRTLYDAELSQMQSH 349
Query: 917 ISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGD 1096
ISD SV+LSMDNNR L+LDSII EVRAQYE+IA +SKAEAEALYQTK ELQ AGRHGD
Sbjct: 350 ISDTSVVLSMDNNRSLDLDSIIAEVRAQYEDIAQRSKAEAEALYQTKLGELQTTAGRHGD 409
Query: 1097 DLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEG 1276
DL+NTK+EI EL R+IQR+R+EIE VKKQ +NL+TAIA+AEQ G+ ALKDA AKL EL+
Sbjct: 410 DLRNTKSEIIELNRMIQRLRAEIEGVKKQNANLQTAIAEAEQHGEMALKDANAKLQELQA 469
Query: 1277 ALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXX 1456
AL QAK++LAR+LR+YQELM++KLALD+EIATYRKLLE EE RMSGE PS V
Sbjct: 470 ALQQAKDDLARLLRDYQELMNVKLALDVEIATYRKLLEGEEYRMSGECPSAVSISVVSSS 529
Query: 1457 XXXXXYGFRPSSVSGGYVANSGSCISGVCSVRGG 1558
G GGY G + G S GG
Sbjct: 530 TTSASAG----GYGGGYGGGMGGGLGGGFSAGGG 559
>ref|NP_000415.2| keratin, type II cytoskeletal 5 [Homo sapiens].
Length = 590
Score = 489 bits (1259), Expect = e-138
Identities = 256/420 (60%), Positives = 326/420 (77%), Gaps = 6/420 (1%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +VTVN+SLL PLN+++DP IQ+VR +EREQIK LNNKFASFIDKVRFLEQQN+VL+TK
Sbjct: 140 IQEVTVNQSLLTPLNLQIDPSIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTK 199
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
W LLQ+ + NLEP+ E YI+ LR+QL+++ G+R RLDSELR+++D+VED+K +YE
Sbjct: 200 WTLLQEQGTKTVRQNLEPLFEQYINNLRRQLDSIVGERGRLDSELRNMQDLVEDFKNKYE 259
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
+EIN+RT AENEFV+LKKDVDAAY NKVEL+AKVD++ EI F + ++AE++Q+Q+H+S
Sbjct: 260 DEINKRTTAENEFVMLKKDVDAAYMNKVELEAKVDALMDEINFMKMFFDAELSQMQTHVS 319
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR+L+LDSII EV+AQYEEIA +S+ EAE+ YQTK++ELQ AGRHGDDL
Sbjct: 320 DTSVVLSMDNNRNLDLDSIIAEVKAQYEEIANRSRTEAESWYQTKYEELQQTAGRHGDDL 379
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+NTK+EISE+ R+IQR+R+EI+NVKKQ +NL+ AIADAEQRG+ ALKDAR KL ELE AL
Sbjct: 380 RNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEAL 439
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSPVXXXXXXXXXX 1462
+AK+++AR+LREYQELM+ KLALD+EIATYRKLLE EECR+SGE PV
Sbjct: 440 QKAKQDMARLLREYQELMNTKLALDVEIATYRKLLEGEECRLSGEGVGPVNISVV----- 494
Query: 1463 XXXYGFRPSSVSGGYVANS---GSCISGVCSVRGGETRSRSSTTDYKDA---LGKGSSLS 1624
SSVS GY + S G G+ GG SS + Y + +G G LS
Sbjct: 495 -------TSSVSSGYGSGSGYGGGLGGGLGGGLGGGLAGGSSGSYYSSSSGGVGLGGGLS 547
>ref|NP_056932.2| keratin, type II cytoskeletal 2 oral [Homo sapiens].
Length = 638
Score = 488 bits (1257), Expect = e-138
Identities = 266/425 (62%), Positives = 321/425 (75%), Gaps = 8/425 (1%)
Frame = +2
Query: 383 IHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETK 562
I +V VN+SLL PLNVE+DP+I +V+AQEREQIK LNNKFASFIDKVRFLEQQN+VLETK
Sbjct: 155 IQEVIVNQSLLQPLNVEIDPQIGQVKAQEREQIKTLNNKFASFIDKVRFLEQQNKVLETK 214
Query: 563 WELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRYE 742
WELLQQ + ++LEP E YIS L KQL++L G+R L+ EL+S++D+VED+KK+YE
Sbjct: 215 WELLQQQTTGSGPSSLEPCFESYISFLCKQLDSLLGERGNLEGELKSMQDLVEDFKKKYE 274
Query: 743 EEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFQCLYEAEIAQIQSHIS 922
+EIN+RTAAENEFV LKKDVDAA+ NKVELQAKVDS+ E+ F + LYE E++Q+QSH S
Sbjct: 275 DEINKRTAAENEFVGLKKDVDAAFMNKVELQAKVDSLTDEVSFLRTLYEMELSQMQSHAS 334
Query: 923 DMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDL 1102
D SV+LSMDNNR L+L SII EVRAQYEEIA +SK+EAEALYQTK ELQ AGRHGDDL
Sbjct: 335 DTSVVLSMDNNRCLDLGSIIAEVRAQYEEIAQRSKSEAEALYQTKLGELQTTAGRHGDDL 394
Query: 1103 KNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGAL 1282
+NTK+EI EL R+IQR+R+EIENVKKQ +NL+TAIA+AEQRG+ ALKDA AKL +L+ AL
Sbjct: 395 RNTKSEIMELNRMIQRLRAEIENVKKQNANLQTAIAEAEQRGEMALKDANAKLQDLQTAL 454
Query: 1283 HQAKEELARMLREYQELMSLKLALDMEIATYRKLLESEECRMSGEFPSP--------VXX 1438
+AK++LAR+LR+YQELM++KLALD+EIATYRKLLE EECRMSGE S V
Sbjct: 455 QKAKDDLARLLRDYQELMNVKLALDVEIATYRKLLEGEECRMSGECQSAVCISVVSNVTS 514
Query: 1439 XXXXXXXXXXXYGFRPSSVSGGYVANSGSCISGVCSVRGGETRSRSSTTDYKDALGKGSS 1618
+G S SGGY S S S V GG + G+GSS
Sbjct: 515 TSGSSGSSRGVFGGVSGSGSGGYKGGSSSSSSSGYGVSGGSGSGYGGVSSGSTG-GRGSS 573
Query: 1619 LSAPS 1633
S S
Sbjct: 574 GSYQS 578
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,958,060
Number of extensions: 1888332
Number of successful extensions: 12933
Number of sequences better than 1.0e-05: 143
Number of HSP's gapped: 12137
Number of HSP's successfully gapped: 162
Length of query: 680
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 571
Effective length of database: 14,704,088
Effective search space: 8396034248
Effective search space used: 8396034248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012439
(2041 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1179 0.0
Sscrofa_Chr12 74 3e-10
Sscrofa_Chr04 66 8e-08
gb|GL896034.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 62 1e-06
Sscrofa_Chr15 62 1e-06
>Sscrofa_Chr05
|| Length = 111506441
Score = 1179 bits (595), Expect = 0.0
Identities = 602/603 (99%), Gaps = 1/603 (0%)
Strand = Plus / Minus
Query: 1440 ccatcatcagcaccaccagcggcagcagtggctatggcttccggcccagctcggtcagtg 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18478452 ccatcatcagcaccaccagcggcagcagtggctatggcttccggcccagctcggtcagtg 18478393
Query: 1500 gaggctatgtggccaacagcggcagttgcatctctggagtgtgcagcgtccgaggtgggg 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18478392 gaggctatgtggccaacagcggcagttgcatctctggagtgtgcagcgtccgaggtgggg 18478333
Query: 1560 aaacccgcagccggagcagcaccaccgactacaaggatgccctggggaagggctccagcc 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18478332 aaacccgcagccggagcagcaccaccgactacaaggatgccctggggaagggctccagcc 18478273
Query: 1620 tgagtgccccctccaagaaagccagtcggtagaggagagggctgcccagagccctcctac 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18478272 tgagtgccccctccaagaaagccagtcggtagaggagagggctgcccagagccctcctac 18478213
Query: 1680 cgtcgctggctccggctcccacgtgccctctccctagccctctgtcagtcccaccccact 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18478212 cgtcgctggctccggctcccacgtgccctctccctagccctctgtcagtcccaccccact 18478153
Query: 1740 ctgcccaccttgctctcgtacctccggtgctggacgtgccactcactcctcccagctcat 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18478152 ctgcccaccttgctctcgtacctccggtgctggacgtgccactcactcctcccagctcat 18478093
Query: 1800 gtcttcctgaacctggacaggtaaggatgactgagctttgtgaaattctttcctgcacgt 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18478092 gtcttcctgaacctggacaggtaaggatgactgagctttgtgaaattctttcctgcacgt 18478033
Query: 1860 gcctgtgtttgcctctttggctctggtcctccagccatgccatcggctcagtccctggct 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18478032 gcctgtgtttgcctctttggctctggtcctccagccatgccatcggctcagtccctggct 18477973
Query: 1920 cccagccttccatcctctgcccaggctctggctcagtcactcattactctgtctggctcc 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18477972 cccagccttccatcctctgcccaggctctggctcagtcactcattactctgtctggctcc 18477913
Query: 1980 gtgggtctc-aaccaaggtccccctctcacactggagctcctaagggcagagctggtttt 2038
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18477912 gtgggtctcaaaccaaggtccccctctcacactggagctcctaagggcagagctggtttt 18477853
Query: 2039 gtg 2041
|||
Sbjct: 18477852 gtg 18477850
Score = 1009 bits (509), Expect = 0.0
Identities = 516/517 (99%), Gaps = 1/517 (0%)
Strand = Plus / Minus
Query: 8 acctgcagaacc-agtgggagtttgccttcgtccctcctgcatctgagctccatctctac 66
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18397746 acctgcagaacccagtgggagtttgccttcgtccctcctgcatctgagctccatctctac 18397687
Query: 67 cagaagcatgagccgccaattcacctgcaagtctggagctgcatccaaggggggcttcag 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18397686 cagaagcatgagccgccaattcacctgcaagtctggagctgcatccaaggggggcttcag 18397627
Query: 127 tggctgttcggctgtgctctcagggggcagctcgtcctcctaccgggcagggggcaaagg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18397626 tggctgttcggctgtgctctcagggggcagctcgtcctcctaccgggcagggggcaaagg 18397567
Query: 187 gctcagtggaggcttcggaagccggagcttgtacaacctgggcggcatccggagcatctc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18397566 gctcagtggaggcttcggaagccggagcttgtacaacctgggcggcatccggagcatctc 18397507
Query: 247 cttcaacatggccaacagcaccggaaagagtggaggctatggatttggccggggccgggc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18397506 cttcaacatggccaacagcaccggaaagagtggaggctatggatttggccggggccgggc 18397447
Query: 307 cagtggctttgctggcagcatgtttggcagcgtggccctgggacctgtgtgcccaactgt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18397446 cagtggctttgctggcagcatgtttggcagcgtggccctgggacctgtgtgcccaactgt 18397387
Query: 367 gtgcccacctggaggcatccaccaggtcaccgtcaatgagagcctcctggcccccctcaa 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18397386 gtgcccacctggaggcatccaccaggtcaccgtcaatgagagcctcctggcccccctcaa 18397327
Query: 427 cgtggagctggaccctgagatccagaaagtgcgtgcccaggagcgggagcagatcaaggc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18397326 cgtggagctggaccctgagatccagaaagtgcgtgcccaggagcgggagcagatcaaggc 18397267
Query: 487 actgaacaacaagtttgcctcctttattgacaaggtg 523
|||||||||||||||||||||||||||||||||||||
Sbjct: 18397266 actgaacaacaagtttgcctcctttattgacaaggtg 18397230
Score = 444 bits (224), Expect = e-122
Identities = 224/224 (100%)
Strand = Plus / Minus
Query: 1182 aggcttccaacctggagacggccatcgctgatgccgagcagcggggagacaacgccctga 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18480171 aggcttccaacctggagacggccatcgctgatgccgagcagcggggagacaacgccctga 18480112
Query: 1242 aggatgcccgggccaagctggacgagctggagggtgccctgcaccaggccaaggaagagc 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18480111 aggatgcccgggccaagctggacgagctggagggtgccctgcaccaggccaaggaagagc 18480052
Query: 1302 tggcccggatgctgcgggagtaccaggaactcatgagcctgaagctggccttggacatgg 1361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18480051 tggcccggatgctgcgggagtaccaggaactcatgagcctgaagctggccttggacatgg 18479992
Query: 1362 agatcgccacctaccgcaagctgctggagagcgaggagtgccgg 1405
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18479991 agatcgccacctaccgcaagctgctggagagcgaggagtgccgg 18479948
Score = 438 bits (221), Expect = e-120
Identities = 395/453 (87%)
Strand = Plus / Minus
Query: 71 agcatgagccgccaattcacctgcaagtctggagctgcatccaaggggggcttcagtggc 130
|||||||| ||||||||||||| |||||| |||||||| ||||||||||||||||| |||
Sbjct: 18451123 agcatgagtcgccaattcacctacaagtcaggagctgcttccaaggggggcttcagcggc 18451064
Query: 131 tgttcggctgtgctctcagggggcagctcgtcctcctaccgggcagggggcaaagggctc 190
||||| ||||||||||||||||| ||||| |||||||| || |||||||||||| | ||
Sbjct: 18451063 tgttcagctgtgctctcagggggaagctcatcctcctatcgagcagggggcaaaccgttc 18451004
Query: 191 agtggaggcttcggaagccggagcttgtacaacctgggcggcatccggagcatctccttc 250
|| || | |||||||||||||||| ||||||||||||| |||| |||||||||||| |||
Sbjct: 18451003 agcggggacttcggaagccggagcctgtacaacctggggggcacccggagcatctctttc 18450944
Query: 251 aacatggccaacagcaccggaaagagtggaggctatggatttggccggggccgggccagt 310
|||||||||| |||| || | || ||| || || |||| ||||| |||||
Sbjct: 18450943 aacatggccagtagcagtgggcgggcagggaactacgggttaagccgaggccgaaccagt 18450884
Query: 311 ggctttgctggcagcatgtttggcagcgtggccctgggacctgtgtgcccaactgtgtgc 370
||||||||||||||||||||||||||| |||||||||| || ||||| ||| |||||| |
Sbjct: 18450883 ggctttgctggcagcatgtttggcagcatggccctggggcccgtgtgtccacctgtgtcc 18450824
Query: 371 ccacctggaggcatccaccaggtcaccgtcaatgagagcctcctggcccccctcaacgtg 430
|| | || |||||||||||||||||| |||| |||||||||||| |||||||||||||
Sbjct: 18450823 cctacagggggcatccaccaggtcaccatcaacaagagcctcctggtccccctcaacgtg 18450764
Query: 431 gagctggaccctgagatccagaaagtgcgtgcccaggagcgggagcagatcaaggcactg 490
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 18450763 gagctggaccctgagatccagaaagttcgtgcccaggagtgggagcagatcaaggcactg 18450704
Query: 491 aacaacaagtttgcctcctttattgacaaggtg 523
|||||||||||||||||||| || |||||||||
Sbjct: 18450703 aacaacaagtttgcctccttcatcgacaaggtg 18450671
Score = 434 bits (219), Expect = e-119
Identities = 219/219 (100%)
Strand = Plus / Minus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgggagctgctgcagc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18395118 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgggagctgctgcagc 18395059
Query: 579 agctggacctgaacaactgtaagaacaacctggagcccatcctcgagggctacatcagca 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18395058 agctggacctgaacaactgtaagaacaacctggagcccatcctcgagggctacatcagca 18394999
Query: 639 ccctgaggaagcagctggaggcactgtccggggatagggtgaggctggactcagagctga 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18394998 ccctgaggaagcagctggaggcactgtccggggatagggtgaggctggactcagagctga 18394939
Query: 699 ggagcgtgcgagacgtggtggaggactacaagaagaggt 737
|||||||||||||||||||||||||||||||||||||||
Sbjct: 18394938 ggagcgtgcgagacgtggtggaggactacaagaagaggt 18394900
Score = 363 bits (183), Expect = 3e-97
Identities = 210/219 (95%)
Strand = Plus / Minus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgggagctgctgcagc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18449183 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgggagctgctgcagc 18449124
Query: 579 agctggacctgaacaactgtaagaacaacctggagcccatcctcgagggctacatcagca 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18449123 agctggacctgaacaactgtaagaacaacctggagcccatcctcgagggctacatcagca 18449064
Query: 639 ccctgaggaagcagctggaggcactgtccggggatagggtgaggctggactcagagctga 698
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 18449063 ccctgcagaagcagctggaggtgctgtccggggacagggtgaggctggactcagagctga 18449004
Query: 699 ggagcgtgcgagacgtggtggaggactacaagaagaggt 737
||||| ||| ||| ||||||||||||||||||||||||
Sbjct: 18449003 ggagcacgcgggacatggtggaggactacaagaagaggt 18448965
Score = 339 bits (171), Expect = 4e-90
Identities = 207/219 (94%)
Strand = Plus / Minus
Query: 1187 tccaacctggagacggccatcgctgatgccgagcagcggggagacaacgccctgaaggat 1246
|||||||||||||| ||||| || || |||||||||||||| || || ||||||||||||
Sbjct: 18409914 tccaacctggagacagccattgccgacgccgagcagcggggggaaaatgccctgaaggat 18409855
Query: 1247 gcccgggccaagctggacgagctggagggtgccctgcaccaggccaaggaagagctggcc 1306
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct: 18409854 gcccgggccaagctggacgaactggagggtgccctacaccaggccaaggaggagctggcc 18409795
Query: 1307 cggatgctgcgggagtaccaggaactcatgagcctgaagctggccttggacatggagatc 1366
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 18409794 cggatgctgcgggagtaccaggagctcatgagcctgaagctggccttggacatggagatc 18409735
Query: 1367 gccacctaccgcaagctgctggagagcgaggagtgccgg 1405
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 18409734 gccacctaccgcaagctgctggagggcgaggagtgccgg 18409696
Score = 331 bits (167), Expect = 9e-88
Identities = 206/219 (94%)
Strand = Plus / Minus
Query: 1187 tccaacctggagacggccatcgctgatgccgagcagcggggagacaacgccctgaaggat 1246
||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct: 18443102 tccaatctggagacggccattgctgatgccgaacagcggggagacaacgctctgaaggat 18443043
Query: 1247 gcccgggccaagctggacgagctggagggtgccctgcaccaggccaaggaagagctggcc 1306
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 18443042 gcccgggccaagctggacgagctggagggtgccctgcaccaggccaaggaggagctggcc 18442983
Query: 1307 cggatgctgcgggagtaccaggaactcatgagcctgaagctggccttggacatggagatc 1366
||||||||||| ||||||||||| ||||||||| ||||||||| ||||||| ||||||
Sbjct: 18442982 cggatgctgcgcgagtaccaggagctcatgagcacaaagctggccctggacatcgagatc 18442923
Query: 1367 gccacctaccgcaagctgctggagagcgaggagtgccgg 1405
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 18442922 gccacctaccgcaagctgctggagggcgaggagtgccgg 18442884
Score = 327 bits (165), Expect = 1e-86
Identities = 165/165 (100%)
Strand = Plus / Minus
Query: 893 gagatcgctcagatccagtcccacatcagcgacatgtccgtcatcctgtccatggacaac 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18482270 gagatcgctcagatccagtcccacatcagcgacatgtccgtcatcctgtccatggacaac 18482211
Query: 953 aaccgtgacctgaacttggacagcatcatcgacgaggtccgtgcccagtacgaggagatc 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18482210 aaccgtgacctgaacttggacagcatcatcgacgaggtccgtgcccagtacgaggagatc 18482151
Query: 1013 gccctcaagagtaaggctgaggccgaggcgctgtaccagaccaag 1057
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18482150 gccctcaagagtaaggctgaggccgaggcgctgtaccagaccaag 18482106
Score = 291 bits (147), Expect = 8e-76
Identities = 207/227 (91%)
Strand = Plus / Minus
Query: 297 ggggccgggccagtggctttgctggcagcatgtttggcagcgtggccctgggacctgtgt 356
||||||||||||||||||||||||||||||||||||| ||| ||||||| || || |||
Sbjct: 18416265 ggggccgggccagtggctttgctggcagcatgtttggaagcatggccctagggcccatgt 18416206
Query: 357 gcccaactgtgtgcccacctggaggcatccaccaggtcaccgtcaatgagagcctcctgg 416
|||| | ||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct: 18416205 acccatccatgtgcccacctgggggcatccaccaggtcactgtcaacaagagcctcctgg 18416146
Query: 417 cccccctcaacgtggagctggaccctgagatccagaaagtgcgtgcccaggagcgggagc 476
|||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 18416145 cccccctcaatgtggagctggaccctgagatccagaaggtgcgcacccaggagcgggagc 18416086
Query: 477 agatcaaggcactgaacaacaagtttgcctcctttattgacaaggtg 523
|||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 18416085 agatcaaggcactgaacaacaagtttgcctccttcatcgacaaggtg 18416039
Score = 268 bits (135), Expect = 1e-68
Identities = 198/219 (90%)
Strand = Plus / Minus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgggagctgctgcagc 578
||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 18415422 aggtgaggttcctggagcagcagaaccaggtactggagaccaagtggcagctgctgcagc 18415363
Query: 579 agctggacctgaacaactgtaagaacaacctggagcccatcctcgagggctacatcagca 638
|||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 18415362 agctggacctagacaactgtaagaaaaacctggagcccatccttgagggctacatcagca 18415303
Query: 639 ccctgaggaagcagctggaggcactgtccggggatagggtgaggctggactcagagctga 698
||||| ||||||||||||||| ||||| ||||| ||| ||||||||||||| |||||||
Sbjct: 18415302 ccctgcagaagcagctggaggctctgtctggggacaggatgaggctggactcggagctga 18415243
Query: 699 ggagcgtgcgagacgtggtggaggactacaagaagaggt 737
| | ||| ||| ||||||||||||||||||||||||
Sbjct: 18415242 aaatcatgcaggacctggtggaggactacaagaagaggt 18415204
Score = 256 bits (129), Expect = 4e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 1056 agttccaggagctgcagctggcagctggccggcatggggatgacctcaaaaacaccaaga 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18481916 agttccaggagctgcagctggcagctggccggcatggggatgacctcaaaaacaccaaga 18481857
Query: 1116 acgagatctcggagcttacccggctcatccagagaatccgctcagagattgagaacgtga 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18481856 acgagatctcggagcttacccggctcatccagagaatccgctcagagattgagaacgtga 18481797
Query: 1176 agaagcagg 1184
|||||||||
Sbjct: 18481796 agaagcagg 18481788
Score = 238 bits (120), Expect = 1e-59
Identities = 192/216 (88%)
Strand = Plus / Minus
Query: 1187 tccaacctggagacggccatcgctgatgccgagcagcggggagacaacgccctgaaggat 1246
|||||||| ||||| |||||| ||||||| ||||||||||| ||| | ||||||||||
Sbjct: 18385710 tccaacctagagacagccatcactgatgctgagcagcggggcgactgcaccctgaaggac 18385651
Query: 1247 gcccgggccaagctggacgagctggagggtgccctgcaccaggccaaggaagagctggcc 1306
|||| |||||||||||| ||| ||||||| |||||| ||||||||||||| |||||||||
Sbjct: 18385650 gcccaggccaagctggatgagttggagggcgccctgtaccaggccaaggaggagctggcc 18385591
Query: 1307 cggatgctgcgggagtaccaggaactcatgagcctgaagctggccttggacatggagatc 1366
|| |||||||||||||||||||| ||||||||| ||||||||| ||||| ||||||||
Sbjct: 18385590 cgaatgctgcgggagtaccaggagctcatgagcacaaagctggccctggacgtggagatc 18385531
Query: 1367 gccacctaccgcaagctgctggagagcgaggagtgc 1402
|||||||||||||||||||| ||| |||||||||||
Sbjct: 18385530 gccacctaccgcaagctgctagagggcgaggagtgc 18385495
Score = 208 bits (105), Expect = 9e-51
Identities = 150/165 (90%)
Strand = Plus / Minus
Query: 893 gagatcgctcagatccagtcccacatcagcgacatgtccgtcatcctgtccatggacaac 952
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 18389426 gagatcgctcagatccagtctcacatcagcgacacgtccgtcatcctgtccatggacaac 18389367
Query: 953 aaccgtgacctgaacttggacagcatcatcgacgaggtccgtgcccagtacgaggagatc 1012
||||| |||||| || ||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct: 18389366 aaccgggacctggacctggacagcatcatcgctgaggtccgtgcccagtatgaggacatc 18389307
Query: 1013 gccctcaagagtaaggctgaggccgaggcgctgtaccagaccaag 1057
|||| ||||| ||||| ||||| |||||||||||||||| ||||
Sbjct: 18389306 tccctgaagagcaaggccgaggctgaggcgctgtaccagagcaag 18389262
Score = 188 bits (95), Expect = 8e-45
Identities = 98/99 (98%)
Strand = Plus / Minus
Query: 795 aggatgtggatgcagcctatgccaataaggtggagctgcaggccaaggtggactccatgg 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18482730 aggatgtggatgcagcctatgccaataaggtggagctgcaggccaaggtggactccatgg 18482671
Query: 855 accaggagatcaagttcttccagtgtctctatgaagctg 893
|||||||||||||||||||| ||||||||||||||||||
Sbjct: 18482670 accaggagatcaagttcttcaagtgtctctatgaagctg 18482632
Score = 184 bits (93), Expect = 1e-43
Identities = 129/141 (91%)
Strand = Plus / Minus
Query: 1265 gagctggagggtgccctgcaccaggccaaggaagagctggcccggatgctgcgggagtac 1324
|||||||||| ||||||| | |||||||||| |||||||||||||||||||| || |||
Sbjct: 18586379 gagctggaggctgccctgaagaaggccaaggaggagctggcccggatgctgcgtgaatac 18586320
Query: 1325 caggaactcatgagcctgaagctggccttggacatggagatcgccacctaccgcaagctg 1384
||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 18586319 caggagctgatgagcgtgaagctggccttggacattgagatcgccacctaccgcaagctg 18586260
Query: 1385 ctggagagcgaggagtgccgg 1405
|||||| ||||||||||||||
Sbjct: 18586259 ctggagggcgaggagtgccgg 18586239
Score = 168 bits (85), Expect = 8e-39
Identities = 145/165 (87%)
Strand = Plus / Minus
Query: 893 gagatcgctcagatccagtcccacatcagcgacatgtccgtcatcctgtccatggacaac 952
||||| ||||||||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct: 18446595 gagattgctcagatccagtcccacatcagtgacacatccgtcatcctctccatggacaac 18446536
Query: 953 aaccgtgacctgaacttggacagcatcatcgacgaggtccgtgcccagtacgaggagatc 1012
|| || |||| || ||||||||||||| | ||||||| ||||||||||||||||||
Sbjct: 18446535 aatcggagcctggacctggacagcatcattgcggaggtccaagcccagtacgaggagatc 18446476
Query: 1013 gccctcaagagtaaggctgaggccgaggcgctgtaccagaccaag 1057
||||||||||| || || ||||||||||| |||||||||||||||
Sbjct: 18446475 gccctcaagagcaaagccgaggccgaggccctgtaccagaccaag 18446431
Score = 167 bits (84), Expect = 3e-38
Identities = 129/144 (89%)
Strand = Plus / Minus
Query: 380 ggcatccaccaggtcaccgtcaatgagagcctcctggcccccctcaacgtggagctggac 439
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 18432706 ggcatcccgcaggtcaccgtcaacaagagcctcctggcccccctcaacgtggagctggac 18432647
Query: 440 cctgagatccagaaagtgcgtgcccaggagcgggagcagatcaaggcactgaacaacaag 499
|| ||| ||||||| ||||| || ||||||||||||||||||||||| |||||||| |||
Sbjct: 18432646 cccgagttccagaaggtgcgcgcgcaggagcgggagcagatcaaggcgctgaacaataag 18432587
Query: 500 tttgcctcctttattgacaaggtg 523
|| || ||||| || |||||||||
Sbjct: 18432586 ttcgcttccttcatcgacaaggtg 18432563
Score = 145 bits (73), Expect = 1e-31
Identities = 115/129 (89%)
Strand = Plus / Minus
Query: 929 tccgtcatcctgtccatggacaacaaccgtgacctgaacttggacagcatcatcgacgag 988
||||||||||||||||||||||||||||| |||||| || ||||||||||||| | ||||
Sbjct: 18413376 tccgtcatcctgtccatggacaacaaccgggacctggacctggacagcatcattgccgag 18413317
Query: 989 gtccgtgcccagtacgaggagatcgccctcaagagtaaggctgaggccgaggcgctgtac 1048
||||| |||||||| ||||| |||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 18413316 gtccgcgcccagtatgaggacatcgccctgaagagcaaggccgaggctgaggcgctgtat 18413257
Query: 1049 cagaccaag 1057
|||| ||||
Sbjct: 18413256 cagagcaag 18413248
Score = 141 bits (71), Expect = 2e-30
Identities = 179/215 (83%)
Strand = Plus / Plus
Query: 1188 ccaacctggagacggccatcgctgatgccgagcagcggggagacaacgccctgaaggatg 1247
|||||||| ||| ||||| |||||||| |||||||| || || ||||| ||||| |
Sbjct: 18369979 ccaacctgcagaatgccattgctgatgctgagcagcgtggggagctggccctcaaggacg 18370038
Query: 1248 cccgggccaagctggacgagctggagggtgccctgcaccaggccaaggaagagctggccc 1307
|| || |||||||| ||||||||||| ||||||||| |||||||| | || ||||||
Sbjct: 18370039 ccaggaacaagctggccgagctggaggatgccctgcagaaggccaagcaggacatggccc 18370098
Query: 1308 ggatgctgcgggagtaccaggaactcatgagcctgaagctggccttggacatggagatcg 1367
|| ||||| ||||||||||||| ||||||| | ||||||||| ||||| |||||||||
Sbjct: 18370099 ggctgctgagggagtaccaggagctcatgaacaccaagctggccctggacgtggagatcg 18370158
Query: 1368 ccacctaccgcaagctgctggagagcgaggagtgc 1402
|||||||| | |||||||||||| |||||||||||
Sbjct: 18370159 ccacctacaggaagctgctggagggcgaggagtgc 18370193
Score = 137 bits (69), Expect = 3e-29
Identities = 168/201 (83%)
Strand = Plus / Plus
Query: 1202 gccatcgctgatgccgagcagcggggagacaacgccctgaaggatgcccgggccaagctg 1261
||||||||||||||||||||||| || || | ||||| ||||||||| || |||||||
Sbjct: 18204590 gccatcgctgatgccgagcagcgtggggagatggccctcaaggatgccaggaacaagctg 18204649
Query: 1262 gacgagctggagggtgccctgcaccaggccaaggaagagctggcccggatgctgcgggag 1321
| ||||||||||| ||||||||| |||||||| | || ||||| || ||||| ||||
Sbjct: 18204650 gccgagctggaggatgccctgcagaaggccaagcaggacatggccaggctgctgaaggag 18204709
Query: 1322 taccaggaactcatgagcctgaagctggccttggacatggagatcgccacctaccgcaag 1381
|||||||| ||||||| | ||||||||| ||||| ||||||| ||||||||| | |||
Sbjct: 18204710 taccaggagctcatgaacaccaagctggccctggacgtggagattgccacctacaggaag 18204769
Query: 1382 ctgctggagagcgaggagtgc 1402
|||||||| |||||||||||
Sbjct: 18204770 ctgctggaaggcgaggagtgc 18204790
Score = 133 bits (67), Expect = 4e-28
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 1277 gccctgcaccaggccaaggaagagctggcccggatgctgcgggagtaccaggaactcatg 1336
|||||||||||||||||||| || ||||||||| ||||||| || ||||||| ||||||
Sbjct: 18603928 gccctgcaccaggccaaggaggacctggcccggctgctgcgtgactaccaggccctcatg 18603869
Query: 1337 agcctgaagctggccttggacatggagatcgccacctaccgcaagctgctggagagcgag 1396
| | | ||||||||| ||||| ||||||||||||||||||| |||||||||||||| |||
Sbjct: 18603868 aacgtcaagctggccctggacgtggagatcgccacctaccgaaagctgctggagagtgag 18603809
Query: 1397 gag 1399
|||
Sbjct: 18603808 gag 18603806
Score = 129 bits (65), Expect = 7e-27
Identities = 167/201 (83%)
Strand = Plus / Plus
Query: 1202 gccatcgctgatgccgagcagcggggagacaacgccctgaaggatgcccgggccaagctg 1261
||||||||||||||||||||||| || || | ||||| ||||||||| || |||||||
Sbjct: 18186856 gccatcgctgatgccgagcagcgtggggagatggccctcaaggatgccaggaacaagctg 18186915
Query: 1262 gacgagctggagggtgccctgcaccaggccaaggaagagctggcccggatgctgcgggag 1321
| ||||||||||| |||||||| |||||||| | || ||||| || ||||| ||||
Sbjct: 18186916 gccgagctggaggatgccctgcttaaggccaagcaggacatggccaggctgctgaaggag 18186975
Query: 1322 taccaggaactcatgagcctgaagctggccttggacatggagatcgccacctaccgcaag 1381
|||||||| ||||||| | ||||||||| ||||| ||||||| ||||||||| | |||
Sbjct: 18186976 taccaggagctcatgaacgccaagctggccctggacgtggagattgccacctacaggaag 18187035
Query: 1382 ctgctggagagcgaggagtgc 1402
|||||||| |||||||||||
Sbjct: 18187036 ctgctggaaggcgaggagtgc 18187056
Score = 129 bits (65), Expect = 7e-27
Identities = 113/129 (87%)
Strand = Plus / Minus
Query: 1056 agttccaggagctgcagctggcagctggccggcatggggatgacctcaaaaacaccaaga 1115
||||||| ||||| ||||||||||| |||| ||||||||||||||||||| |||||||||
Sbjct: 18443596 agttccaagagctccagctggcagccggccagcatggggatgacctcaaacacaccaaga 18443537
Query: 1116 acgagatctcggagcttacccggctcatccagagaatccgctcagagattgagaacgtga 1175
|||||||||| ||||| |||||||||||||| || | | ||| ||||| |||| ||||
Sbjct: 18443536 acgagatctcagagctgacccggctcatccaaaggctgcactcggagatcgagagtgtga 18443477
Query: 1176 agaagcagg 1184
|||||||||
Sbjct: 18443476 agaagcagg 18443468
Score = 127 bits (64), Expect = 3e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 734 aggtatgaggaagaaatcaacaggcggacggcggcagagaacgagtttgtactgctcaag 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18394174 aggtatgaggaagaaatcaacaggcggacggcggcagagaacgagtttgtactgctcaag 18394115
Query: 794 aagg 797
||||
Sbjct: 18394114 aagg 18394111
Score = 119 bits (60), Expect = 6e-24
Identities = 126/148 (85%)
Strand = Plus / Plus
Query: 1255 caagctggacgagctggagggtgccctgcaccaggccaaggaagagctggcccggatgct 1314
|||||||| ||||||||||| |||||||| |||||||| | || |||| || |||
Sbjct: 18157280 caagctggccgagctggaggacgccctgcagaaggccaagcaggacatggcgcgacagct 18157339
Query: 1315 gcgggagtaccaggaactcatgagcctgaagctggccttggacatggagatcgccaccta 1374
||| ||||||||||| || |||| | | ||||||||| ||||||| ||||||||||||||
Sbjct: 18157340 gcgtgagtaccaggagctgatgaacgtcaagctggccctggacatcgagatcgccaccta 18157399
Query: 1375 ccgcaagctgctggagagcgaggagtgc 1402
|||||||||||||||| |||||||||||
Sbjct: 18157400 ccgcaagctgctggagggcgaggagtgc 18157427
Score = 119 bits (60), Expect = 6e-24
Identities = 126/148 (85%)
Strand = Plus / Minus
Query: 1255 caagctggacgagctggagggtgccctgcaccaggccaaggaagagctggcccggatgct 1314
|||||||| ||||||||||| |||||||| |||||||| | || |||| || |||
Sbjct: 18263539 caagctggccgagctggaggacgccctgcagaaggccaagcaggacatggcgcgacagct 18263480
Query: 1315 gcgggagtaccaggaactcatgagcctgaagctggccttggacatggagatcgccaccta 1374
||| ||||||||||| || |||| | | ||||||||| ||||||| ||||||||||||||
Sbjct: 18263479 gcgtgagtaccaggagctgatgaacgtcaagctggccctggacatcgagatcgccaccta 18263420
Query: 1375 ccgcaagctgctggagagcgaggagtgc 1402
|||||||||||||||| |||||||||||
Sbjct: 18263419 ccgcaagctgctggagggcgaggagtgc 18263392
Score = 117 bits (59), Expect = 2e-23
Identities = 128/151 (84%)
Strand = Plus / Minus
Query: 902 cagatccagtcccacatcagcgacatgtccgtcatcctgtccatggacaacaaccgtgac 961
||||| ||| ||||| |||| |||| ||| || |||||||||||||||||||||| |||
Sbjct: 18587552 cagatgcagacccacgtcagtgacacgtctgtggtcctgtccatggacaacaaccgggac 18587493
Query: 962 ctgaacttggacagcatcatcgacgaggtccgtgcccagtacgaggagatcgccctcaag 1021
||| || ||||||||||||||| |||||||| |||||||| ||||||||| ||| |
Sbjct: 18587492 ctggacctggacagcatcatcgctgaggtccgcgcccagtatgaggagatcacccagaga 18587433
Query: 1022 agtaaggctgaggccgaggcgctgtaccaga 1052
|| ||||||||||||||||| ||||| ||||
Sbjct: 18587432 agcaaggctgaggccgaggccctgtatcaga 18587402
Score = 111 bits (56), Expect = 2e-21
Identities = 140/168 (83%)
Strand = Plus / Minus
Query: 1235 gccctgaaggatgcccgggccaagctggacgagctggagggtgccctgcaccaggccaag 1294
||||| |||||||| ||||||||||||| || ||||||| ||||||||| ||||||||
Sbjct: 18100130 gccctcaaggatgcacgggccaagctggtggacctggaggatgccctgcagaaggccaag 18100071
Query: 1295 gaagagctggcccggatgctgcgggagtaccaggaactcatgagcctgaagctggccttg 1354
| || |||| ||| |||||| ||||||||||| ||||||| | | |||||||| ||
Sbjct: 18100070 caggacatggcacggctgctgcacgagtaccaggagctcatgaacatcaagctggctctg 18100011
Query: 1355 gacatggagatcgccacctaccgcaagctgctggagagcgaggagtgc 1402
||| ||||||||||||||||| | |||||||| ||| | |||||||||
Sbjct: 18100010 gacgtggagatcgccacctacaggaagctgctagagggagaggagtgc 18099963
Score = 111 bits (56), Expect = 2e-21
Identities = 140/168 (83%)
Strand = Plus / Minus
Query: 1235 gccctgaaggatgcccgggccaagctggacgagctggagggtgccctgcaccaggccaag 1294
||||| |||||||| ||||||||||||| || ||||||| ||||||||| ||||||||
Sbjct: 18279100 gccctcaaggatgcacgggccaagctggtggacctggaggatgccctgcagaaggccaag 18279041
Query: 1295 gaagagctggcccggatgctgcgggagtaccaggaactcatgagcctgaagctggccttg 1354
| || |||| ||| |||||| ||||||||||| ||||||| | | |||||||| ||
Sbjct: 18279040 caggacatggcacggctgctgcacgagtaccaggagctcatgaacatcaagctggctctg 18278981
Query: 1355 gacatggagatcgccacctaccgcaagctgctggagagcgaggagtgc 1402
||| ||||||||||||||||| | |||||||| ||| | |||||||||
Sbjct: 18278980 gacgtggagatcgccacctacaggaagctgctagagggagaggagtgc 18278933
Score = 109 bits (55), Expect = 6e-21
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 919 cagcgacatgtccgtcatcctgtccatggacaacaaccgtgacctgaacttggacagcat 978
|||||| | |||||| |||||||||||||||||||||| |||||| || ||||||||||
Sbjct: 18544564 cagcgatacgtccgtagtcctgtccatggacaacaaccgggacctggacctggacagcat 18544505
Query: 979 catcgacgaggtccgtgcccagtacgaggagatcgccctcaagagtaaggctgaggccga 1038
||||| |||||||| || ||||| |||| || |||| | ||| ||||| ||||| ||
Sbjct: 18544504 catcgctgaggtccgcgctcagtatgaggccattgcccagaggagcaaggccgaggctga 18544445
Query: 1039 ggcgctgtaccagaccaag 1057
|||||||||||||||||||
Sbjct: 18544444 ggcgctgtaccagaccaag 18544426
Score = 109 bits (55), Expect = 6e-21
Identities = 160/195 (82%)
Strand = Plus / Minus
Query: 1208 gctgatgccgagcagcggggagacaacgccctgaaggatgcccgggccaagctggacgag 1267
|||||||| |||||||| || || | ||||| ||||||||| |||||||| | |||
Sbjct: 18571290 gctgatgctgagcagcgtggggagatggccctcaaggatgccaatgccaagctccaagag 18571231
Query: 1268 ctggagggtgccctgcaccaggccaaggaagagctggcccggatgctgcgggagtaccag 1327
||| || |||||| || ||||||||||| || || |||||| ||||||| || ||||||
Sbjct: 18571230 ctgcgggctgccctacagcaggccaaggatgaccttgcccggctgctgcgtgactaccag 18571171
Query: 1328 gaactcatgagcctgaagctggccttggacatggagatcgccacctaccgcaagctgctg 1387
|| || |||| | ||||||||| |||| ||||||||||||||||||||||||| |||
Sbjct: 18571170 gagctgatgaatgtcaagctggccctggatgtggagatcgccacctaccgcaagctcctg 18571111
Query: 1388 gagagcgaggagtgc 1402
||| |||||||||||
Sbjct: 18571110 gagggcgaggagtgc 18571096
Score = 107 bits (54), Expect = 2e-20
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 1059 tccaggagctgcagctggcagctggccggcatggggatgacctcaaaaacaccaagaacg 1118
||||||| ||||||||||| ||||||| |||||| |||||||||||| |||||| |||||
Sbjct: 18411725 tccaggaactgcagctggcggctggccagcatggagatgacctcaaacacaccaggaacg 18411666
Query: 1119 agatctcggagcttacccggctcatccagagaatccgctcagagattgagaacgtgaaga 1178
|||| ||||| || | |||||||||||||| ||||| | ||||||| ||| || ||||
Sbjct: 18411665 agatatcggaactgaatcggctcatccagaggatccggtgtgagattgcgaatgtaaaga 18411606
Query: 1179 agcagg 1184
||||||
Sbjct: 18411605 agcagg 18411600
Score = 107 bits (54), Expect = 2e-20
Identities = 87/98 (88%)
Strand = Plus / Minus
Query: 1301 ctggcccggatgctgcgggagtaccaggaactcatgagcctgaagctggccttggacatg 1360
||||| ||| ||||||| ||||||||||| || |||||| ||||||||||| |||| ||
Sbjct: 18618919 ctggcacggctgctgcgcgagtaccaggagctgatgagcttgaagctggccctggatgtg 18618860
Query: 1361 gagatcgccacctaccgcaagctgctggagagcgagga 1398
||||||||||||||||||| |||||||||| |||||||
Sbjct: 18618859 gagatcgccacctaccgcaggctgctggagggcgagga 18618822
Score = 99.6 bits (50), Expect = 6e-18
Identities = 107/126 (84%)
Strand = Plus / Minus
Query: 1277 gccctgcaccaggccaaggaagagctggcccggatgctgcgggagtaccaggaactcatg 1336
|||||||| |||||||| || || |||||||| ||||||| || |||||||| || ||
Sbjct: 18523789 gccctgcagcaggccaaagaggacatggcccggctgctgcgcgactaccaggagctgctg 18523730
Query: 1337 agcctgaagctggccttggacatggagatcgccacctaccgcaagctgctggagagcgag 1396
| |||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 18523729 ggaaccaagctgtccttggacgtggagatcgccacctaccgcaagctgctggagggcgag 18523670
Query: 1397 gagtgc 1402
||||||
Sbjct: 18523669 gagtgc 18523664
Score = 99.6 bits (50), Expect = 6e-18
Identities = 125/150 (83%)
Strand = Plus / Minus
Query: 374 cctggaggcatccaccaggtcaccgtcaatgagagcctcctggcccccctcaacgtggag 433
||||| |||||||| |||||||| ||||| ||||||| ||| | ||||||||||| |||
Sbjct: 18612815 cctggtggcatccagcaggtcacggtcaaccagagcctgctgactcccctcaacgtagag 18612756
Query: 434 ctggaccctgagatccagaaagtgcgtgcccaggagcgggagcagatcaaggcactgaac 493
| ||||| ||||||| | | ||||| | ||||||||||||||||||||| | || |||
Sbjct: 18612755 attgacccggagatccggcaggtgcgcacgcaggagcgggagcagatcaagaccctcaac 18612696
Query: 494 aacaagtttgcctcctttattgacaaggtg 523
||||||| |||||||| || |||||||||
Sbjct: 18612695 gacaagttcgcctccttcatcgacaaggtg 18612666
Score = 95.6 bits (48), Expect = 9e-17
Identities = 156/192 (81%)
Strand = Plus / Minus
Query: 1211 gatgccgagcagcggggagacaacgccctgaaggatgcccgggccaagctggacgagctg 1270
||||| |||||| ||||||| || ||||| || ||||||| ||||||| | ||||||
Sbjct: 18428364 gatgctgagcagaggggagaaaatgccctcaaagatgcccaaaacaagctgaaggagctg 18428305
Query: 1271 gagggtgccctgcaccaggccaaggaagagctggcccggatgctgcgggagtaccaggaa 1330
|||| || ||||| ||||||| || | |||||| | ||||||| || ||||||||
Sbjct: 18428304 gaggaagctctgcagaaggccaaagagaacctggcctgcctgctgcgtgactaccaggag 18428245
Query: 1331 ctcatgagcctgaagctggccttggacatggagatcgccacctaccgcaagctgctggag 1390
|| |||| | | |||||||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct: 18428244 ctgatgaacgtcaagctggctttggatgtggagattgccacctaccgcaagctgctggag 18428185
Query: 1391 agcgaggagtgc 1402
|||||||||||
Sbjct: 18428184 ggcgaggagtgc 18428173
Score = 95.6 bits (48), Expect = 9e-17
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 1312 gctgcgggagtaccaggaactcatgagcctgaagctggccttggacatggagatcgccac 1371
|||||| |||||||||||||| |||| | ||||||||| ||||| |||||||||||||
Sbjct: 18664284 gctgcgtgagtaccaggaactgatgaatgtcaagctggccctggacgtggagatcgccac 18664225
Query: 1372 ctaccgcaagctgctggagagcgaggag 1399
||||||||||||||||||| | ||||||
Sbjct: 18664224 ctaccgcaagctgctggagggagaggag 18664197
Score = 93.7 bits (47), Expect = 4e-16
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgggagctgctgcag 577
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 18610813 aggtgcggttcctggagcagcagaataaggtgctggagaccaagtgggtgctgctgcag 18610755
Score = 87.7 bits (44), Expect = 2e-14
Identities = 53/56 (94%)
Strand = Plus / Minus
Query: 518 aaggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgggagctgct 573
||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||
Sbjct: 18483457 aaggtgcggttcctggaacagcagaaccaggtgctgaagaccaaatgggagctgct 18483402
Score = 83.8 bits (42), Expect = 3e-13
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgggagctgctgcagc 578
||||| ||||||||||||||||||||||||||||| | || || ||||||||||||||||
Sbjct: 18510159 aggtgaggttcctggagcagcagaaccaggtgctgcaaacaaaatgggagctgctgcagc 18510100
Query: 579 ag 580
||
Sbjct: 18510099 ag 18510098
Score = 81.8 bits (41), Expect = 1e-12
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 1313 ctgcgggagtaccaggaactcatgagcctgaagctggccttggacatggagatcgccacc 1372
||||| ||||||||||| ||| | | | | ||| ||||| ||||||| ||||||||||||
Sbjct: 15694012 ctgcgagagtaccaggagctcctcaacgtcaagatggccctggacatcgagatcgccacc 15694071
Query: 1373 taccgcaagctgctggagagcgaggagtgccgg 1405
||||| |||||||||||| |||||||| |||||
Sbjct: 15694072 taccggaagctgctggagggcgaggagagccgg 15694104
Score = 79.8 bits (40), Expect = 5e-12
Identities = 133/164 (81%)
Strand = Plus / Minus
Query: 1211 gatgccgagcagcggggagacaacgccctgaaggatgcccgggccaagctggacgagctg 1270
||||| |||||||| || || || ||||| || ||||||| | ||||||| | ||||||
Sbjct: 18507816 gatgcagagcagcgtggtgagaatgccctcaaagatgcccagaacaagctgaatgagctg 18507757
Query: 1271 gagggtgccctgcaccaggccaaggaagagctggcccggatgctgcgggagtaccaggaa 1330
|||| |||||||| |||||||||| || |||||||| ||||||| || |||||||||
Sbjct: 18507756 gaggaggccctgcagaaggccaaggaggacctggcccgcctgctgcgtgactaccaggaa 18507697
Query: 1331 ctcatgagcctgaagctggccttggacatggagatcgccaccta 1374
|| |||| | || |||||| ||||| ||||||| ||||||||
Sbjct: 18507696 ctgatgaacaccaaactggccctggacgtggagattgccaccta 18507653
Score = 77.8 bits (39), Expect = 2e-11
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgg 565
|||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 18284656 aggtgcggttcctggagcagcagaacaaggttctggagaccaagtgg 18284610
Score = 77.8 bits (39), Expect = 2e-11
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgggagctgctgcagc 578
|||||||||||||||||||||||||| |||| || |||||||||||| | ||||| ||||
Sbjct: 18573891 aggtgcggttcctggagcagcagaacaaggtcctagagaccaagtggaatctgctccagc 18573832
Query: 579 agc 581
|||
Sbjct: 18573831 agc 18573829
Score = 77.8 bits (39), Expect = 2e-11
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 461 gcccaggagcgggagcagatcaaggcactgaacaacaagtttgcctcctttattgacaag 520
|||||||||||||||||||||||| | || ||||||||||| |||||||| ||||| |||
Sbjct: 18574953 gcccaggagcgggagcagatcaagaccctcaacaacaagttcgcctccttcattgataag 18574894
Query: 521 gtg 523
|||
Sbjct: 18574893 gtg 18574891
Score = 77.8 bits (39), Expect = 2e-11
Identities = 111/135 (82%)
Strand = Plus / Minus
Query: 389 caggtcaccgtcaatgagagcctcctggcccccctcaacgtggagctggaccctgagatc 448
||||||||| |||| ||||||| || | || ||| |||||||| | ||||||||||||
Sbjct: 18592055 caggtcaccatcaaccagagcctgctcactccactccacgtggagatcgaccctgagatc 18591996
Query: 449 cagaaagtgcgtgcccaggagcgggagcagatcaaggcactgaacaacaagtttgcctcc 508
||||| || || |||| |||||||||||||||||| || ||| ||||||| ||||||
Sbjct: 18591995 cagaaggtccggacccaagagcgggagcagatcaagatcctcaacgacaagttcgcctcc 18591936
Query: 509 tttattgacaaggtg 523
|| || |||||||||
Sbjct: 18591935 ttcatcgacaaggtg 18591921
Score = 73.8 bits (37), Expect = 3e-10
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 941 tccatggacaacaaccgtgacctgaacttggacagcatcatcgacgaggtccgtgcccag 1000
|||||||||||||| || |||| || |||| |||||||| | ||||||| ||||||
Sbjct: 18572297 tccatggacaacaatcgcttcctggacctggatagcatcattgccgaggtcaaggcccag 18572238
Query: 1001 tacgaggagatcgccctcaagagtaaggctgaggccgaggcgctgtaccagaccaag 1057
||||||||||| |||| | ||| ||||||||||| || || |||||||||||||||
Sbjct: 18572237 tacgaggagattgcccagaggagcaaggctgaggcagaagccctgtaccagaccaag 18572181
Score = 71.9 bits (36), Expect = 1e-09
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 1312 gctgcgggagtaccaggaactcatgagcctgaagctggccttggacatggagatcgccac 1371
|||||| ||||||||||| ||||||| | | ||||| | |||| | |||||||||||
Sbjct: 18124038 gctgcgtgagtaccaggagctcatgattgtcaggctgggcctggattttgagatcgccac 18123979
Query: 1372 ctaccgcaagctgctggagagcgaggag 1399
|||||||||||||||||||||||||||
Sbjct: 18123978 ttaccgcaagctgctggagagcgaggag 18123951
Score = 71.9 bits (36), Expect = 1e-09
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 944 atggacaacaaccgtgacctgaacttggacagcatcatcgacgaggtccgtgcccagtac 1003
|||||||||||||| ||||| || ||||||||||||||| ||||||| |||||||||
Sbjct: 18369173 atggacaacaaccgcaacctggacctggacagcatcatcgccgaggtcaaggcccagtac 18369232
Query: 1004 gaggagatcgcc 1015
||||| ||||||
Sbjct: 18369233 gaggacatcgcc 18369244
Score = 71.9 bits (36), Expect = 1e-09
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 1404 ggatgtcaggagaatttccctcccctgtcagcatct 1439
||||||||||||||||||||||||||||||||||||
Sbjct: 18479274 ggatgtcaggagaatttccctcccctgtcagcatct 18479239
Score = 71.9 bits (36), Expect = 1e-09
Identities = 150/188 (79%)
Strand = Plus / Minus
Query: 1188 ccaacctggagacggccatcgctgatgccgagcagcggggagacaacgccctgaaggatg 1247
|||||||| |||||||| |||||||||| ||||||||||| || || || |||||||
Sbjct: 18542584 ccaacctgcagacggccgtcgctgatgcagagcagcggggggaggtggctctcaaggatg 18542525
Query: 1248 cccgggccaagctggacgagctggagggtgccctgcaccaggccaaggaagagctggccc 1307
| ||||||| | ||||| ||| ||||||||| || |||||||| || |||||||
Sbjct: 18542524 ctgacaccaagcttcaggagctcaaggttgccctgcagcaagccaaggaggacctggccc 18542465
Query: 1308 ggatgctgcgggagtaccaggaactcatgagcctgaagctggccttggacatggagatcg 1367
|| ||||| |||||||||||| | |||| | ||||||||| ||||| | |||||||
Sbjct: 18542464 ggctgctgaaggagtaccaggagttgatgaatgtcaagctggccctggacgttgagatcg 18542405
Query: 1368 ccacctac 1375
||||||||
Sbjct: 18542404 ccacctac 18542397
Score = 69.9 bits (35), Expect = 5e-09
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 465 aggagcgggagcagatcaaggcactgaacaacaagtttgcctcctttattgacaaggtg 523
|||||||||||||||||||| | || ||||||||||| |||||||| || |||||||||
Sbjct: 18092926 aggagcgggagcagatcaagactctcaacaacaagttcgcctccttcatcgacaaggtg 18092868
Score = 69.9 bits (35), Expect = 5e-09
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 465 aggagcgggagcagatcaaggcactgaacaacaagtttgcctcctttattgacaaggtg 523
|||||||||||||||||||| | || ||||||||||| |||||||| || |||||||||
Sbjct: 18201075 aggagcgggagcagatcaagaccctcaacaacaagttcgcctccttcatcgacaaggtg 18201133
Score = 69.9 bits (35), Expect = 5e-09
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 465 aggagcgggagcagatcaaggcactgaacaacaagtttgcctcctttattgacaaggtg 523
|||||||||||||||||||| | || ||||||||||| |||||||| || |||||||||
Sbjct: 18272251 aggagcgggagcagatcaagactctcaacaacaagttcgcctccttcatcgacaaggtg 18272193
Score = 69.9 bits (35), Expect = 5e-09
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 465 aggagcgggagcagatcaaggcactgaacaacaagtttgcctcctttattgacaaggtg 523
|||||||||||||||||||| | || ||||||||||| |||||||| || |||||||||
Sbjct: 18366436 aggagcgggagcagatcaagaccctcaacaacaagttcgcctccttcatcgacaaggtg 18366494
Score = 69.9 bits (35), Expect = 5e-09
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgg 565
|||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct: 18367061 aggtgcggttcctggagcagcagaacaaggtcctggacaccaagtgg 18367107
Score = 69.9 bits (35), Expect = 5e-09
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgg 565
|||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 18546947 aggtgcggttcctggagcagcagaacaaagtcctggagaccaagtgg 18546901
Score = 69.9 bits (35), Expect = 5e-09
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 461 gcccaggagcgggagcagatcaaggcactgaacaacaagtttgcctcctttattgacaag 520
|||||||||||||||||||||||| | || ||| ||||||| |||||||| ||||| |||
Sbjct: 18548732 gcccaggagcgggagcagatcaagaccctcaacgacaagttcgcctccttcattgataag 18548673
Query: 521 gtg 523
|||
Sbjct: 18548672 gtg 18548670
Score = 69.9 bits (35), Expect = 5e-09
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgggagctgctgcagc 578
|||| ||||||||||||||||||||||| || ||| ||||||||||| | |||||||||
Sbjct: 18622928 aggttcggttcctggagcagcagaaccaagtcctgcagaccaagtggcatttgctgcagc 18622869
Query: 579 agc 581
|||
Sbjct: 18622868 agc 18622866
Score = 67.9 bits (34), Expect = 2e-08
Identities = 103/126 (81%)
Strand = Plus / Minus
Query: 932 gtcatcctgtccatggacaacaaccgtgacctgaacttggacagcatcatcgacgaggtc 991
|||||||| ||||||||||||||||| ||||| || || |||||||||||||||| |||
Sbjct: 18508829 gtcatcctctccatggacaacaaccgccacctggacctgaacagcatcatcgacgaagtc 18508770
Query: 992 cgtgcccagtacgaggagatcgccctcaagagtaaggctgaggccgaggcgctgtaccag 1051
||||| || || ||||| |||| | ||| ||||||||||| ||| | ||||| |||
Sbjct: 18508769 aaagcccaatatgaagagattgcccagaggagcaaggctgaggctgagaccctgtatcag 18508710
Query: 1052 accaag 1057
|||||
Sbjct: 18508709 tccaag 18508704
Score = 67.9 bits (34), Expect = 2e-08
Identities = 103/126 (81%)
Strand = Plus / Minus
Query: 932 gtcatcctgtccatggacaacaaccgtgacctgaacttggacagcatcatcgacgaggtc 991
|||||||||||||||||||| ||||| |||| | | |||||||||||||| | |||
Sbjct: 18525812 gtcatcctgtccatggacaataaccgctccctggatctcgacagcatcatcgatgcggtg 18525753
Query: 992 cgtgcccagtacgaggagatcgccctcaagagtaaggctgaggccgaggcgctgtaccag 1051
|| ||||||| ||| |||||| | ||||| |||| ||||| |||||||||||||||
Sbjct: 18525752 cggacccagtatgagctgatcgcacaaaagagcaaggaagaggctgaggcgctgtaccag 18525693
Query: 1052 accaag 1057
||||||
Sbjct: 18525692 accaag 18525687
Score = 67.9 bits (34), Expect = 2e-08
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 527 ttcctggagcagcagaaccaggtgctggagaccaagtgggagctgctgcagcag 580
|||||||||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 18529372 ttcctggagcagcagaaccaggtgctacaaacaaaatgggagctgctgcagcag 18529319
Score = 67.9 bits (34), Expect = 2e-08
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 470 cgggagcagatcaaggcactgaacaacaagtttgcctcctttattgacaaggtg 523
||||||||||||| || || |||||||||||||||||||| ||||||||||||
Sbjct: 18531906 cgggagcagatcatggttctcaacaacaagtttgcctccttcattgacaaggtg 18531853
Score = 63.9 bits (32), Expect = 3e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaag 562
||||||| |||||||||||||||||| || ||||||||||||||
Sbjct: 18075432 aggtgcgcttcctggagcagcagaacaagctgctggagaccaag 18075475
Score = 63.9 bits (32), Expect = 3e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaag 562
||||||| |||||||||||||||||| || ||||||||||||||
Sbjct: 18108642 aggtgcgcttcctggagcagcagaacaagctgctggagaccaag 18108685
Score = 63.9 bits (32), Expect = 3e-07
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaag 562
||||||| |||||||||||||||||| || ||||||||||||||
Sbjct: 18136239 aggtgcgcttcctggagcagcagaacaagctgctggagaccaag 18136196
Score = 63.9 bits (32), Expect = 3e-07
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 734 aggtatgaggaagaaatcaacaggcggacggcggcagagaacgagtttgtactgctcaag 793
||||| || ||||||||||||||||| |||| ||||||||| ||||| || ||||||||
Sbjct: 18267845 aggtacgaagaagaaatcaacaggcgcacggtggcagagaatgagttcgtggtgctcaag 18267786
Query: 794 aagg 797
||||
Sbjct: 18267785 aagg 18267782
Score = 63.9 bits (32), Expect = 3e-07
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 936 tcctgtccatggacaacaaccgtgacctgaacttggacagcatcatcgacgaggtc 991
|||||||||||||||||||||| |||| || ||||||||||||||| |||||||
Sbjct: 18281865 tcctgtccatggacaacaaccgcagcctggacctggacagcatcatcgccgaggtc 18281810
Score = 63.9 bits (32), Expect = 3e-07
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 683 ctggactcagagctgaggagcgtgcgagacgtggtggaggactacaagaaga 734
||||||||||||||||||| | ||| |||| |||||||||||| ||||||||
Sbjct: 18573721 ctggactcagagctgaggaacatgcaagacctggtggaggacttcaagaaga 18573670
Score = 63.9 bits (32), Expect = 3e-07
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 936 tcctgtccatggacaacaaccgtgacctgaacttggacagcatcatcgacgaggtccgtg 995
|||| ||||||||||||| ||| |||| || ||||| ||||||||| ||||||| |
Sbjct: 18665493 tcctctccatggacaacagccgctccctggacctggacggcatcatcgccgaggtcaagg 18665434
Query: 996 cccagtacgaggagatcgcc 1015
||||||||||||||||||||
Sbjct: 18665433 cccagtacgaggagatcgcc 18665414
Score = 61.9 bits (31), Expect = 1e-06
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgg 565
||||||| ||||| |||||||||||| || |||||||||||||||||
Sbjct: 18030977 aggtgcgcttccttgagcagcagaacaagctgctggagaccaagtgg 18031023
Score = 61.9 bits (31), Expect = 1e-06
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgg 565
||||||||||||||||||||||||| |||| |||||||| ||||||
Sbjct: 18091097 aggtgcggttcctggagcagcagaataaggtcctggagacaaagtgg 18091051
Score = 61.9 bits (31), Expect = 1e-06
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 527 ttcctggagcagcagaaccaggtgctggagaccaagtgg 565
|||||||||||||||||| |||||||||| |||||||||
Sbjct: 18202061 ttcctggagcagcagaacaaggtgctggacaccaagtgg 18202099
Score = 61.9 bits (31), Expect = 1e-06
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgg 565
||||||||||||||||||||||||| |||| |||||||| ||||||
Sbjct: 18270422 aggtgcggttcctggagcagcagaataaggtcctggagacaaagtgg 18270376
Score = 61.9 bits (31), Expect = 1e-06
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 519 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgggagctgctgcagc 578
|||||||| |||||||||||||||| |||| ||||||||||| ||| | || |||||||
Sbjct: 18668050 aggtgcggcacctggagcagcagaacaaggttctggagaccaaatggaacctcctgcagc 18667991
Query: 579 agc 581
|||
Sbjct: 18667990 agc 18667988
Score = 60.0 bits (30), Expect = 5e-06
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 683 ctggactcagagctgaggagcgtgcgagacgtggtggaggactacaagaa 732
||||||||||||||||||||| ||| ||| |||||||||||| ||||||
Sbjct: 18202217 ctggactcagagctgaggagcatgcaggacctggtggaggacttcaagaa 18202266
Score = 60.0 bits (30), Expect = 5e-06
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 465 aggagcgggagcagatcaaggcactgaacaacaagtttgcctcctttattgacaaggt 522
|||||||||| ||||||||| | || ||||||||||| |||||||| || ||||||||
Sbjct: 18285202 aggagcgggaacagatcaagaccctcaacaacaagttcgcctccttcatcgacaaggt 18285145
Score = 60.0 bits (30), Expect = 5e-06
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 462 cccaggagcgggagcagatcaaggcactgaacaacaagtttgcctcctttattgacaagg 521
|||||||| ||||||||||||| | || ||||| |||||||||||||| || |||||||
Sbjct: 18670842 cccaggagaaggagcagatcaagactctcaacaataagtttgcctccttcatcgacaagg 18670783
Query: 522 tg 523
||
Sbjct: 18670782 tg 18670781
>Sscrofa_Chr12
|| Length = 63588571
Score = 73.8 bits (37), Expect = 3e-10
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1343 aagctggccttggacatggagatcgccacctaccgcaagctgctggagagcgaggag 1399
||||||||| ||||||| ||||||||||||||| | |||||||||||| ||||||||
Sbjct: 18705918 aagctggccctggacatcgagatcgccacctacaggaagctgctggagggcgaggag 18705974
>Sscrofa_Chr04
|| Length = 143465943
Score = 65.9 bits (33), Expect = 8e-08
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 1343 aagctggccttggacatggagatcgccacctaccgcaagctgctggagagcgaggag 1399
||||||||| |||||||||||||| | ||||||||||||| |||||| ||||||||
Sbjct: 102645395 aagctggccctggacatggagatccacgcctaccgcaagctcctggagggcgaggag 102645339
>gb|GL896034.1| Sus scrofa unplaced genomic scaffold chrU_scaffold454
Length = 1833
Score = 61.9 bits (31), Expect = 1e-06
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 465 aggagcgggagcagatcaaggcactgaacaacaagtttgcctcctttattgacaaggtg 523
|||||||||||||||||||| | || ||||||||||| ||||| || || |||||||||
Sbjct: 330 aggagcgggagcagatcaagaccctcaacaacaagttcgcctcgttcatcgacaaggtg 388
>Sscrofa_Chr15
|| Length = 157681621
Score = 61.9 bits (31), Expect = 1e-06
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 1359 tggagatcgccacctaccgcaagctgctggagagcgaggagtgccgg 1405
||||||| ||||||||||| |||||||||||| |||||||| |||||
Sbjct: 134563434 tggagattgccacctaccggaagctgctggagggcgaggagagccgg 134563480
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 55,112,705
Number of extensions: 720
Number of successful extensions: 720
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 712
Number of HSP's successfully gapped: 84
Length of query: 2041
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2019
Effective length of database: 2,808,408,574
Effective search space: 5670176910906
Effective search space used: 5670176910906
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)