Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012442
(2243 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534915.2| PREDICTED: similar to NADH-ubiquinone oxidoredu... 547 e-161
Alignment gi|XP_867978.1| PREDICTED: similar to NADH-ubiquinone oxidoredu... 405 e-113
>ref|XP_534915.2| PREDICTED: similar to NADH-ubiquinone oxidoreductase 39 kDa subunit,
mitochondrial precursor (Complex I-39KD) (CI-39KD)
isoform 1 [Canis familiaris].
Length = 377
Score = 547 bits (1409), Expect(2) = e-161
Identities = 257/302 (85%), Positives = 287/302 (95%)
Frame = +2
Query: 1280 MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 1459
MSRS + A AT++ +GP +RQLHHALIPHGKGGRSSVSG+VATVFGATGFLGRYVVNHLG
Sbjct: 15 MSRSSITARATAMFHGPLRRQLHHALIPHGKGGRSSVSGVVATVFGATGFLGRYVVNHLG 74
Query: 1460 RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW 1639
RMGSQVI+PYRC+PYDTMHLRPMGDLGQIIF+EW+G++KDSI++ V+HSNVVINL+GREW
Sbjct: 75 RMGSQVIIPYRCDPYDTMHLRPMGDLGQIIFLEWDGRNKDSIQRAVKHSNVVINLIGREW 134
Query: 1640 ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA 1819
ETKNFDFEDVFVKIP AIA+VSKEAGVEK IH+SHLNADIKS SRYLR+KAVGEKEVR A
Sbjct: 135 ETKNFDFEDVFVKIPQAIAKVSKEAGVEKFIHVSHLNADIKSSSRYLRNKAVGEKEVRDA 194
Query: 1820 FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIK 1999
FPEA IIKPSDIFGREDRFLN+FA+ RWFGGVPLISLGK+TVKQPVY+ D SKGI+NAIK
Sbjct: 195 FPEAIIIKPSDIFGREDRFLNHFANTRWFGGVPLISLGKKTVKQPVYVTDESKGIVNAIK 254
Query: 2000 DPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWT 2179
DPDAKGK+FAFVGPNRYLLFDLVQY+FA+A+RPFLPYPLPHFAYRWV RLFE+SPFEPWT
Sbjct: 255 DPDAKGKSFAFVGPNRYLLFDLVQYVFAMAHRPFLPYPLPHFAYRWVARLFEMSPFEPWT 314
Query: 2180 TK 2185
T+
Sbjct: 315 TR 316
Score = 40.8 bits (94), Expect(2) = e-161
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 2172 PGPRRDKVERVHMSDMTLPHLPGL 2243
P RDKVER+H++DM LPHLPGL
Sbjct: 312 PWTTRDKVERLHITDMILPHLPGL 335
>ref|XP_867978.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 39 kDa subunit,
mitochondrial precursor (Complex I-39KD) (CI-39KD)
isoform 2 [Canis familiaris].
Length = 244
Score = 405 bits (1041), Expect = e-113
Identities = 193/228 (84%), Positives = 216/228 (94%)
Frame = +2
Query: 1280 MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 1459
MSRS + A AT++ +GP +RQLHHALIPHGKGGRSSVSG+VATVFGATGFLGRYVVNHLG
Sbjct: 15 MSRSSITARATAMFHGPLRRQLHHALIPHGKGGRSSVSGVVATVFGATGFLGRYVVNHLG 74
Query: 1460 RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW 1639
RMGSQVI+PYRC+PYDTMHLRPMGDLGQIIF+EW+G++KDSI++ V+HSNVVINL+GREW
Sbjct: 75 RMGSQVIIPYRCDPYDTMHLRPMGDLGQIIFLEWDGRNKDSIQRAVKHSNVVINLIGREW 134
Query: 1640 ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA 1819
ETKNFDFEDVFVKIP AIA+VSKEAGVEK IH+SHLNADIKS SRYLR+KAVGEKEVR A
Sbjct: 135 ETKNFDFEDVFVKIPQAIAKVSKEAGVEKFIHVSHLNADIKSSSRYLRNKAVGEKEVRDA 194
Query: 1820 FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYI 1963
FPEA IIKPSDIFGREDRFLN+FA+ RWFGGVPLISLGK+TVKQPVY+
Sbjct: 195 FPEAIIIKPSDIFGREDRFLNHFANTRWFGGVPLISLGKKTVKQPVYV 242
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 82,410,969
Number of extensions: 2080613
Number of successful extensions: 5560
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5559
Number of HSP's successfully gapped: 3
Length of query: 747
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 637
Effective length of database: 15,207,544
Effective search space: 9687205528
Effective search space used: 9687205528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012442
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012442
(2243 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_991386.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 563 e-165
>ref|NP_991386.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial precursor [Bos taurus].
Length = 380
Score = 563 bits (1450), Expect(2) = e-165
Identities = 267/302 (88%), Positives = 291/302 (96%)
Frame = +2
Query: 1280 MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 1459
MSRS + A+A SV + PPQRQLHHA+IPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG
Sbjct: 15 MSRSSVPALAASVFHSPPQRQLHHAVIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 74
Query: 1460 RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW 1639
RMGSQVIVP+RCEPYDTMHLRPMGDLGQIIFM+WNG+DKDSIR+ VEHS+VVINLVGREW
Sbjct: 75 RMGSQVIVPHRCEPYDTMHLRPMGDLGQIIFMDWNGRDKDSIRRAVEHSSVVINLVGREW 134
Query: 1640 ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA 1819
ET+NFDFEDVFVKIP AIAQVSKEAGVEK IHISHLNADIKS S+YLRSKAVGEKEVR
Sbjct: 135 ETQNFDFEDVFVKIPQAIAQVSKEAGVEKFIHISHLNADIKSSSKYLRSKAVGEKEVRET 194
Query: 1820 FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIK 1999
FPEATIIKP++IFGREDRFLNYFA++RWFGGVPLISLGK+TVKQPVYIVDV+KGIINAIK
Sbjct: 195 FPEATIIKPAEIFGREDRFLNYFANIRWFGGVPLISLGKKTVKQPVYIVDVTKGIINAIK 254
Query: 2000 DPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWT 2179
DPDA+GKTFAFVGP+RYLLFDLVQY+FAVA+RPFLPYPLPHFAYRW+GRLFE+SPFEPWT
Sbjct: 255 DPDARGKTFAFVGPSRYLLFDLVQYVFAVAHRPFLPYPLPHFAYRWIGRLFEISPFEPWT 314
Query: 2180 TK 2185
T+
Sbjct: 315 TR 316
Score = 38.5 bits (88), Expect(2) = e-165
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +3
Query: 2172 PGPRRDKVERVHMSDMTLPHLPGL 2243
P RDKVER+H +D LPHLPGL
Sbjct: 312 PWTTRDKVERIHTTDKILPHLPGL 335
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 79,445,986
Number of extensions: 2130201
Number of successful extensions: 5362
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5362
Number of HSP's successfully gapped: 2
Length of query: 747
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 637
Effective length of database: 14,041,694
Effective search space: 8944559078
Effective search space used: 8944559078
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012442
(2243 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126608.2| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 617 0.0
>ref|XP_003126608.2| PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
9, mitochondrial-like [Sus scrofa].
Length = 377
Score = 617 bits (1592), Expect(2) = 0.0
Identities = 301/302 (99%), Positives = 302/302 (100%)
Frame = +2
Query: 1280 MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 1459
MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG
Sbjct: 15 MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 74
Query: 1460 RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW 1639
RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW
Sbjct: 75 RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW 134
Query: 1640 ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA 1819
ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA
Sbjct: 135 ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA 194
Query: 1820 FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIK 1999
FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIK
Sbjct: 195 FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIK 254
Query: 2000 DPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWT 2179
DPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWT
Sbjct: 255 DPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWT 314
Query: 2180 TK 2185
T+
Sbjct: 315 TR 316
Score = 47.0 bits (110), Expect(2) = 0.0
Identities = 21/24 (87%), Positives = 21/24 (87%)
Frame = +3
Query: 2172 PGPRRDKVERVHMSDMTLPHLPGL 2243
P RDKVERVHMSDMTLPHLPGL
Sbjct: 312 PWTTRDKVERVHMSDMTLPHLPGL 335
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 52,310,546
Number of extensions: 1545893
Number of successful extensions: 3495
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3495
Number of HSP's successfully gapped: 2
Length of query: 747
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 641
Effective length of database: 8,704,850
Effective search space: 5579808850
Effective search space used: 5579808850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012442
(2243 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079634.2| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 489 e-140
>ref|NP_079634.2| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial precursor [Mus musculus].
Length = 377
Score = 489 bits (1260), Expect(2) = e-140
Identities = 231/302 (76%), Positives = 262/302 (86%)
Frame = +2
Query: 1280 MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 1459
MSR + A ATSV G RQLHHA+IPHGKGGRSSVSG+VATVFGATGFLGRYVVNHLG
Sbjct: 15 MSRPAITAAATSVFCGSSHRQLHHAVIPHGKGGRSSVSGVVATVFGATGFLGRYVVNHLG 74
Query: 1460 RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW 1639
RMGSQVI+PYRC+ YD MHLR MGDLGQ+ F+EW+ +DKDSIRK V+HSNVVINL+GREW
Sbjct: 75 RMGSQVIIPYRCDVYDIMHLRLMGDLGQLTFLEWDARDKDSIRKAVQHSNVVINLIGREW 134
Query: 1640 ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA 1819
ET+NFDFEDVFV IP AIAQ SKEAGVE+ IH+SHLNA +KS S+ LRSKAVGEKEVR+
Sbjct: 135 ETRNFDFEDVFVNIPRAIAQASKEAGVERFIHVSHLNASMKSSSKSLRSKAVGEKEVRSV 194
Query: 1820 FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIK 1999
FPEA II+PSDIFGREDRFLN+FA+ RWF VPL+SLG +TVKQPVY+ DVSKGI+NA K
Sbjct: 195 FPEAIIIRPSDIFGREDRFLNHFANYRWFLAVPLVSLGFKTVKQPVYVADVSKGIVNATK 254
Query: 2000 DPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWT 2179
DPDA GKTFAF GPNRYLLF LV+YIF + +R F+PYPLP F Y W+G+LF +SPFEPWT
Sbjct: 255 DPDAVGKTFAFTGPNRYLLFHLVKYIFGMTHRTFIPYPLPLFVYSWIGKLFGLSPFEPWT 314
Query: 2180 TK 2185
TK
Sbjct: 315 TK 316
Score = 30.8 bits (68), Expect(2) = e-140
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 2172 PGPRRDKVERVHMSDMTLPHLPGL 2243
P +DKVER+H+SD+ LPGL
Sbjct: 312 PWTTKDKVERIHISDVMPTDLPGL 335
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 68,645,265
Number of extensions: 1722200
Number of successful extensions: 4441
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4441
Number of HSP's successfully gapped: 2
Length of query: 747
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 638
Effective length of database: 12,343,635
Effective search space: 7875239130
Effective search space used: 7875239130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012442
(2243 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004993.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 514 e-150
>ref|NP_004993.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial precursor [Homo sapiens].
Length = 377
Score = 514 bits (1323), Expect(2) = e-150
Identities = 244/302 (80%), Positives = 277/302 (91%)
Frame = +2
Query: 1280 MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 1459
MSRS + A+ATSV +GPP RQLHHAL+PHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG
Sbjct: 15 MSRSAITAIATSVCHGPPCRQLHHALMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 74
Query: 1460 RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW 1639
RMGSQVI+PYRC+ YD MHLRPMGDLGQ++F+EW+ +DKDSIR+VV+HSNVVINL+GR+W
Sbjct: 75 RMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDW 134
Query: 1640 ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA 1819
ETKNFDFEDVFVKIP AIAQ+SKEAGVEK IH+SHLNA+IKS SRYLR+KAVGEK VR A
Sbjct: 135 ETKNFDFEDVFVKIPQAIAQLSKEAGVEKFIHVSHLNANIKSSSRYLRNKAVGEKVVRDA 194
Query: 1820 FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIK 1999
FPEA I+KPSDIFGREDRFLN FASM FG +PL SLG +TVKQPVY+VDVSKGI+NA+K
Sbjct: 195 FPEAIIVKPSDIFGREDRFLNSFASMHRFGPIPLGSLGWKTVKQPVYVVDVSKGIVNAVK 254
Query: 2000 DPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWT 2179
DPDA GK+FAFVGP+RYLLF LV+YIFAVA+R FLP+PLP FAYRWV R+FE+SPFEPW
Sbjct: 255 DPDANGKSFAFVGPSRYLLFHLVKYIFAVAHRLFLPFPLPLFAYRWVARVFEISPFEPWI 314
Query: 2180 TK 2185
T+
Sbjct: 315 TR 316
Score = 40.0 bits (92), Expect(2) = e-150
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 2172 PGPRRDKVERVHMSDMTLPHLPGL 2243
P RDKVER+H++DM LPHLPGL
Sbjct: 312 PWITRDKVERMHITDMKLPHLPGL 335
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 80,850,158
Number of extensions: 2041242
Number of successful extensions: 5276
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5276
Number of HSP's successfully gapped: 2
Length of query: 747
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 637
Effective length of database: 14,671,124
Effective search space: 9345505988
Effective search space used: 9345505988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012442
(2243 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1164 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 1164 bits (587), Expect = 0.0
Identities = 587/587 (100%)
Strand = Plus / Minus
Query: 702 catcctttctcacatccagtccctgtcctcactttttatctccgcgtccctgcccttagc 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67995055 catcctttctcacatccagtccctgtcctcactttttatctccgcgtccctgcccttagc 67994996
Query: 762 cttagctttctccttaaagaagcttccagagcgcaggggccacgccttctccatccctgc 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67994995 cttagctttctccttaaagaagcttccagagcgcaggggccacgccttctccatccctgc 67994936
Query: 822 ctcactggagccgccgcatccgacaatctcaggaaacaatggcctgagagtccggggagg 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67994935 ctcactggagccgccgcatccgacaatctcaggaaacaatggcctgagagtccggggagg 67994876
Query: 882 tgaacccctccagcgcgatgctgccatcttggctctcagccagtcactggttcaccctga 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67994875 tgaacccctccagcgcgatgctgccatcttggctctcagccagtcactggttcaccctga 67994816
Query: 942 acttcaggtttcttgacaataagaagttatctttacaatccgctctgtagctgggatttc 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67994815 acttcaggtttcttgacaataagaagttatctttacaatccgctctgtagctgggatttc 67994756
Query: 1002 gacaccgggactcttctcttcctacttcctctcttccccgtctccttccggttgtcccag 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67994755 gacaccgggactcttctcttcctacttcctctcttccccgtctccttccggttgtcccag 67994696
Query: 1062 cccctttcgctagccctccgactttcctccgggcctctctcctacccttctccaacctct 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67994695 cccctttcgctagccctccgactttcctccgggcctctctcctacccttctccaacctct 67994636
Query: 1122 gacccgccccttccgttcccaattggcgcctgcgcagacggccgagaaaaatgacttttg 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67994635 gacccgccccttccgttcccaattggcgcctgcgcagacggccgagaaaaatgacttttg 67994576
Query: 1182 actcagcttagtatccgtagtcggctgagagccggcggggtggattgtgggagaagatgg 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67994575 actcagcttagtatccgtagtcggctgagagccggcggggtggattgtgggagaagatgg 67994516
Query: 1242 cggcggccgttcacccccgggttgtccgggccgtgccaatgtcacgt 1288
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67994515 cggcggccgttcacccccgggttgtccgggccgtgccaatgtcacgt 67994469
Score = 617 bits (311), Expect = e-173
Identities = 325/332 (97%)
Strand = Plus / Minus
Query: 239 ttgccgatgataatgggatttgtcaatttatcataaccaggaaagtgagtttttatttac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67995988 ttgccgatgataatgggatttgtcaatttatcataaccaggaaagtgagtttttatttac 67995929
Query: 299 gttgactccagaatcaaatattagcaaaatgtgagcactcagtgaacaaaagatgaggcc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67995928 gttgactccagaatcaaatattagcaaaatgtgagcactcagtgaacaaaagatgaggcc 67995869
Query: 359 aaaaaataggaaagtgcaacattagtaaaactctctgatacaatttcttcaagagnnnnn 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67995868 aaaaaataggaaagtgcaacattagtaaaactctctgatacaatttcttcaagagttttt 67995809
Query: 419 nncttcttccaattcactttggtagatgacacttcagtaaacggtgggggtggggcagag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67995808 ttcttcttccaattcactttggtagatgacacttcagtaaacggtgggggtggggcagag 67995749
Query: 479 tgagaacaatcaatcttagaagtctagtaacaggccacttctactcactgcaggcgtact 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67995748 tgagaacaatcaatcttagaagtctagtaacaggccacttctactcactgcaggcgtact 67995689
Query: 539 gtccatccccagcaacgtacacttccttcttc 570
||||||||||||||||||||||||||||||||
Sbjct: 67995688 gtccatccccagcaacgtacacttccttcttc 67995657
Score = 343 bits (173), Expect = 3e-91
Identities = 173/173 (100%)
Strand = Plus / Minus
Query: 1287 gttcttgtcttgctgcagtagccacatcagtgtcttatggccctccccagcgccagcttc 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67988532 gttcttgtcttgctgcagtagccacatcagtgtcttatggccctccccagcgccagcttc 67988473
Query: 1347 atcacgcgctcatccctcatgggaaaggtgggcgttcctcagtcagtgggattgtggcca 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67988472 atcacgcgctcatccctcatgggaaaggtgggcgttcctcagtcagtgggattgtggcca 67988413
Query: 1407 ctgtgtttggagcaacaggattcctgggccgctatgttgtcaaccaccttggt 1459
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67988412 ctgtgtttggagcaacaggattcctgggccgctatgttgtcaaccaccttggt 67988360
Score = 283 bits (143), Expect = 2e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 1648 aaattttgattttgaggatgttttcgtaaagattccccatgcaattgctcaagtgtccaa 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67981660 aaattttgattttgaggatgttttcgtaaagattccccatgcaattgctcaagtgtccaa 67981601
Query: 1708 ggaagccggagttgaaaaacttattcacatttctcacctgaatgctgatattaaaagccc 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67981600 ggaagccggagttgaaaaacttattcacatttctcacctgaatgctgatattaaaagccc 67981541
Query: 1768 ctctaggtatctgagaagtaagg 1790
|||||||||||||||||||||||
Sbjct: 67981540 ctctaggtatctgagaagtaagg 67981518
Score = 270 bits (136), Expect = 3e-69
Identities = 167/175 (95%), Gaps = 2/175 (1%)
Strand = Plus / Minus
Query: 1 atcaaacattctgagtacctctttcaatgctatcatgccacct-gaaactaatat-aacg 58
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 67996228 atcaaacattctgagtacctctttcaatgctatcatgccaccttgaaactaatattaaca 67996169
Query: 59 ggaggtgctgtctgactgaagnataaaacctaacataactggcaatattatacaggtttt 118
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 67996168 ggaggtgctgtctgacttgaagataaaacctaacataactggcaatattatacaggtttt 67996109
Query: 119 agaatgctgctgatggaagttcccctgtggcgcactggattaaggatccaacata 173
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 67996108 agaatgctgctgatggaagttcccttgtggcgcactggattaaggatccaacata 67996054
Score = 214 bits (108), Expect = 2e-52
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 1788 aggccgttggggagaaagaggtgagagctgcctttccagaagccactatcataaagccat 1847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67980732 aggccgttggggagaaagaggtgagagctgcctttccagaagccactatcataaagccat 67980673
Query: 1848 cggacatctttggaagagaggacagattcctcaattattttgcaagta 1895
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67980672 cggacatctttggaagagaggacagattcctcaattattttgcaagta 67980625
Score = 198 bits (100), Expect = 9e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 1457 ggtcgcatggggtcacaggtgatcgtaccctaccggtgtgagccatatgataccatgcat 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67988038 ggtcgcatggggtcacaggtgatcgtaccctaccggtgtgagccatatgataccatgcat 67987979
Query: 1517 ctccggcccatgggtgacctgggccagattatctttatgg 1556
||||||||||||||||||||||||||||||||||||||||
Sbjct: 67987978 ctccggcccatgggtgacctgggccagattatctttatgg 67987939
Score = 192 bits (97), Expect = 6e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 2037 ggcccaatcggtaccttctctttgacctggtgcagtatatctttgccgtggcctacagac 2096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67972071 ggcccaatcggtaccttctctttgacctggtgcagtatatctttgccgtggcctacagac 67972012
Query: 2097 ccttcctcccttaccctttgccacattttgcctatcg 2133
|||||||||||||||||||||||||||||||||||||
Sbjct: 67972011 ccttcctcccttaccctttgccacattttgcctatcg 67971975
Score = 184 bits (93), Expect = 1e-43
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 1555 ggaatggaacgggaaagacaaggactctatccggaaggtggtggaacacagcaatgtggt 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67983357 ggaatggaacgggaaagacaaggactctatccggaaggtggtggaacacagcaatgtggt 67983298
Query: 1615 catcaaccttgttgggcgagaatgggagaccaa 1647
|||||||||||||||||||||||||||||||||
Sbjct: 67983297 catcaaccttgttgggcgagaatgggagaccaa 67983265
Score = 157 bits (79), Expect = 3e-35
Identities = 82/83 (98%)
Strand = Plus / Minus
Query: 1956 tatatattgtggatgtatccaaaggaattattaatgcaattaaggatccagatgccaaag 2015
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67975153 tatagattgtggatgtatccaaaggaattattaatgcaattaaggatccagatgccaaag 67975094
Query: 2016 ggaaaacgtttgcctttgttggg 2038
|||||||||||||||||||||||
Sbjct: 67975093 ggaaaacgtttgcctttgttggg 67975071
Score = 135 bits (68), Expect = 1e-28
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 1893 gtatgcgctggtttggtggtgtccctcttatttccttgggcaaggagacagtgaaacaac 1952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67976486 gtatgcgctggtttggtggtgtccctcttatttccttgggcaaggagacagtgaaacaac 67976427
Query: 1953 cagtatat 1960
||||||||
Sbjct: 67976426 cagtatat 67976419
Score = 125 bits (63), Expect = 1e-25
Identities = 70/71 (98%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 2133 gatgggtaggtcgactctttgaagtgagtccgttcgagccctggaccacgaagggataag 2192
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 67969390 gatgggtaggtcgactctttgaagtgagtccgttcgagccctggaccacg-agggataag 67969332
Query: 2193 gtggaacgggt 2203
|||||||||||
Sbjct: 67969331 gtggaacgggt 67969321
Score = 115 bits (58), Expect = 1e-22
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 570 cggaatgacataagacatcggtctccgaggtctcccacaagcagaaacttgagctggt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67995187 cggaatgacataagacatcggtctccgaggtctcccacaagcagaaacttgagctggt 67995130
Score = 85.7 bits (43), Expect = 1e-13
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 2201 ggttcacatgtcagacatgacactgcctcacctgcccggcttg 2243
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67966271 ggttcacatgtcagacatgacactgcctcacctgcccggcttg 67966229
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 61,322,705
Number of extensions: 2495
Number of successful extensions: 2495
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2492
Number of HSP's successfully gapped: 14
Length of query: 2243
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2221
Effective length of database: 2,808,408,574
Effective search space: 6237475442854
Effective search space used: 6237475442854
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)