Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012443
(1607 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_991386.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 667 0.0
>ref|NP_991386.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial precursor [Bos taurus].
Length = 380
Score = 667 bits (1720), Expect = 0.0
Identities = 316/361 (87%), Positives = 347/361 (96%)
Frame = +3
Query: 57 MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 236
MSRS + A+A SV + PPQRQLHHA+IPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG
Sbjct: 15 MSRSSVPALAASVFHSPPQRQLHHAVIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 74
Query: 237 RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW 416
RMGSQVIVP+RCEPYDTMHLRPMGDLGQIIFM+WNG+DKDSIR+ VEHS+VVINLVGREW
Sbjct: 75 RMGSQVIVPHRCEPYDTMHLRPMGDLGQIIFMDWNGRDKDSIRRAVEHSSVVINLVGREW 134
Query: 417 ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA 596
ET+NFDFEDVFVKIP AIAQVSKEAGVEK IHISHLNADIKS S+YLRSKAVGEKEVR
Sbjct: 135 ETQNFDFEDVFVKIPQAIAQVSKEAGVEKFIHISHLNADIKSSSKYLRSKAVGEKEVRET 194
Query: 597 FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIK 776
FPEATIIKP++IFGREDRFLNYFA++RWFGGVPLISLGK+TVKQPVYIVDV+KGIINAIK
Sbjct: 195 FPEATIIKPAEIFGREDRFLNYFANIRWFGGVPLISLGKKTVKQPVYIVDVTKGIINAIK 254
Query: 777 DPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWT 956
DPDA+GKTFAFVGP+RYLLFDLVQY+FAVA+RPFLPYPLPHFAYRW+GRLFE+SPFEPWT
Sbjct: 255 DPDARGKTFAFVGPSRYLLFDLVQYVFAVAHRPFLPYPLPHFAYRWIGRLFEISPFEPWT 314
Query: 957 TRDKVERVHMSDMTLPHLPGLEDLGIQATPLELKAIEVLRRHRTYRWLTSEMEDVKPAKT 1136
TRDKVER+H +D LPHLPGLEDLG++ATPLELKAIEVLRRHRTYRWL+SE+EDV+PAKT
Sbjct: 315 TRDKVERIHTTDKILPHLPGLEDLGVEATPLELKAIEVLRRHRTYRWLSSEIEDVQPAKT 374
Query: 1137 V 1139
+
Sbjct: 375 I 375
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,542,101
Number of extensions: 1856846
Number of successful extensions: 4471
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4467
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 428
Effective length of database: 14,140,958
Effective search space: 6052330024
Effective search space used: 6052330024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012443
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012443
(1607 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534915.2| PREDICTED: similar to NADH-ubiquinone oxidoredu... 657 0.0
Alignment gi|XP_867978.1| PREDICTED: similar to NADH-ubiquinone oxidoredu... 405 e-113
>ref|XP_534915.2| PREDICTED: similar to NADH-ubiquinone oxidoreductase 39 kDa subunit,
mitochondrial precursor (Complex I-39KD) (CI-39KD)
isoform 1 [Canis familiaris].
Length = 377
Score = 657 bits (1694), Expect = 0.0
Identities = 311/362 (85%), Positives = 345/362 (95%)
Frame = +3
Query: 57 MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 236
MSRS + A AT++ +GP +RQLHHALIPHGKGGRSSVSG+VATVFGATGFLGRYVVNHLG
Sbjct: 15 MSRSSITARATAMFHGPLRRQLHHALIPHGKGGRSSVSGVVATVFGATGFLGRYVVNHLG 74
Query: 237 RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW 416
RMGSQVI+PYRC+PYDTMHLRPMGDLGQIIF+EW+G++KDSI++ V+HSNVVINL+GREW
Sbjct: 75 RMGSQVIIPYRCDPYDTMHLRPMGDLGQIIFLEWDGRNKDSIQRAVKHSNVVINLIGREW 134
Query: 417 ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA 596
ETKNFDFEDVFVKIP AIA+VSKEAGVEK IH+SHLNADIKS SRYLR+KAVGEKEVR A
Sbjct: 135 ETKNFDFEDVFVKIPQAIAKVSKEAGVEKFIHVSHLNADIKSSSRYLRNKAVGEKEVRDA 194
Query: 597 FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIK 776
FPEA IIKPSDIFGREDRFLN+FA+ RWFGGVPLISLGK+TVKQPVY+ D SKGI+NAIK
Sbjct: 195 FPEAIIIKPSDIFGREDRFLNHFANTRWFGGVPLISLGKKTVKQPVYVTDESKGIVNAIK 254
Query: 777 DPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWT 956
DPDAKGK+FAFVGPNRYLLFDLVQY+FA+A+RPFLPYPLPHFAYRWV RLFE+SPFEPWT
Sbjct: 255 DPDAKGKSFAFVGPNRYLLFDLVQYVFAMAHRPFLPYPLPHFAYRWVARLFEMSPFEPWT 314
Query: 957 TRDKVERVHMSDMTLPHLPGLEDLGIQATPLELKAIEVLRRHRTYRWLTSEMEDVKPAKT 1136
TRDKVER+H++DM LPHLPGLEDLGIQA+PLELKAIEVLRRHRTYRWL SE+EDVKPAKT
Sbjct: 315 TRDKVERLHITDMILPHLPGLEDLGIQASPLELKAIEVLRRHRTYRWLLSEIEDVKPAKT 374
Query: 1137 VN 1142
VN
Sbjct: 375 VN 376
>ref|XP_867978.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 39 kDa
subunit, mitochondrial precursor (Complex I-39KD)
(CI-39KD) isoform 2 [Canis familiaris].
Length = 244
Score = 405 bits (1041), Expect = e-113
Identities = 193/228 (84%), Positives = 216/228 (94%)
Frame = +3
Query: 57 MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 236
MSRS + A AT++ +GP +RQLHHALIPHGKGGRSSVSG+VATVFGATGFLGRYVVNHLG
Sbjct: 15 MSRSSITARATAMFHGPLRRQLHHALIPHGKGGRSSVSGVVATVFGATGFLGRYVVNHLG 74
Query: 237 RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW 416
RMGSQVI+PYRC+PYDTMHLRPMGDLGQIIF+EW+G++KDSI++ V+HSNVVINL+GREW
Sbjct: 75 RMGSQVIIPYRCDPYDTMHLRPMGDLGQIIFLEWDGRNKDSIQRAVKHSNVVINLIGREW 134
Query: 417 ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA 596
ETKNFDFEDVFVKIP AIA+VSKEAGVEK IH+SHLNADIKS SRYLR+KAVGEKEVR A
Sbjct: 135 ETKNFDFEDVFVKIPQAIAKVSKEAGVEKFIHVSHLNADIKSSSRYLRNKAVGEKEVRDA 194
Query: 597 FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYI 740
FPEA IIKPSDIFGREDRFLN+FA+ RWFGGVPLISLGK+TVKQPVY+
Sbjct: 195 FPEAIIIKPSDIFGREDRFLNHFANTRWFGGVPLISLGKKTVKQPVYV 242
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,707,474
Number of extensions: 1669804
Number of successful extensions: 4707
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4703
Number of HSP's successfully gapped: 2
Length of query: 535
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 427
Effective length of database: 15,274,216
Effective search space: 6522090232
Effective search space used: 6522090232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012443
(1607 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126608.2| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 740 0.0
>ref|XP_003126608.2| PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
9, mitochondrial-like [Sus scrofa].
Length = 377
Score = 740 bits (1911), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Frame = +3
Query: 57 MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 236
MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG
Sbjct: 15 MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 74
Query: 237 RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW 416
RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW
Sbjct: 75 RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW 134
Query: 417 ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA 596
ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA
Sbjct: 135 ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA 194
Query: 597 FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIK 776
FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIK
Sbjct: 195 FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIK 254
Query: 777 DPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWT 956
DPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWT
Sbjct: 255 DPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWT 314
Query: 957 TRDKVERVHMSDMTLPHLPGLEDLGIQATPLELKAIEVLRRHRTYRWLTSEMEDVKPAKT 1136
TRDKVERVHMSDMTLPHLPGLEDLGIQATPLELKAIEVLRRHRTYRWLTSEMEDVKPAKT
Sbjct: 315 TRDKVERVHMSDMTLPHLPGLEDLGIQATPLELKAIEVLRRHRTYRWLTSEMEDVKPAKT 374
Query: 1137 VNI 1145
VNI
Sbjct: 375 VNI 377
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,250,889
Number of extensions: 1569812
Number of successful extensions: 2874
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2871
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 431
Effective length of database: 8,754,644
Effective search space: 3773251564
Effective search space used: 3773251564
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012443
(1607 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079634.2| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 584 e-167
>ref|NP_079634.2| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial precursor [Mus musculus].
Length = 377
Score = 584 bits (1505), Expect = e-167
Identities = 276/362 (76%), Positives = 316/362 (87%)
Frame = +3
Query: 57 MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 236
MSR + A ATSV G RQLHHA+IPHGKGGRSSVSG+VATVFGATGFLGRYVVNHLG
Sbjct: 15 MSRPAITAAATSVFCGSSHRQLHHAVIPHGKGGRSSVSGVVATVFGATGFLGRYVVNHLG 74
Query: 237 RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW 416
RMGSQVI+PYRC+ YD MHLR MGDLGQ+ F+EW+ +DKDSIRK V+HSNVVINL+GREW
Sbjct: 75 RMGSQVIIPYRCDVYDIMHLRLMGDLGQLTFLEWDARDKDSIRKAVQHSNVVINLIGREW 134
Query: 417 ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA 596
ET+NFDFEDVFV IP AIAQ SKEAGVE+ IH+SHLNA +KS S+ LRSKAVGEKEVR+
Sbjct: 135 ETRNFDFEDVFVNIPRAIAQASKEAGVERFIHVSHLNASMKSSSKSLRSKAVGEKEVRSV 194
Query: 597 FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIK 776
FPEA II+PSDIFGREDRFLN+FA+ RWF VPL+SLG +TVKQPVY+ DVSKGI+NA K
Sbjct: 195 FPEAIIIRPSDIFGREDRFLNHFANYRWFLAVPLVSLGFKTVKQPVYVADVSKGIVNATK 254
Query: 777 DPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWT 956
DPDA GKTFAF GPNRYLLF LV+YIF + +R F+PYPLP F Y W+G+LF +SPFEPWT
Sbjct: 255 DPDAVGKTFAFTGPNRYLLFHLVKYIFGMTHRTFIPYPLPLFVYSWIGKLFGLSPFEPWT 314
Query: 957 TRDKVERVHMSDMTLPHLPGLEDLGIQATPLELKAIEVLRRHRTYRWLTSEMEDVKPAKT 1136
T+DKVER+H+SD+ LPGLEDLG+Q TPLELK+IEVLRRHRTYRWL+SE+E+ KPAKT
Sbjct: 315 TKDKVERIHISDVMPTDLPGLEDLGVQPTPLELKSIEVLRRHRTYRWLSSEIEETKPAKT 374
Query: 1137 VN 1142
VN
Sbjct: 375 VN 376
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,064,671
Number of extensions: 1385766
Number of successful extensions: 3954
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3953
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 429
Effective length of database: 12,433,743
Effective search space: 5334075747
Effective search space used: 5334075747
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012443
(1607 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004993.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 626 e-179
>ref|NP_004993.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial precursor [Homo sapiens].
Length = 377
Score = 626 bits (1615), Expect = e-179
Identities = 299/363 (82%), Positives = 337/363 (92%)
Frame = +3
Query: 57 MSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 236
MSRS + A+ATSV +GPP RQLHHAL+PHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG
Sbjct: 15 MSRSAITAIATSVCHGPPCRQLHHALMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLG 74
Query: 237 RMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREW 416
RMGSQVI+PYRC+ YD MHLRPMGDLGQ++F+EW+ +DKDSIR+VV+HSNVVINL+GR+W
Sbjct: 75 RMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDW 134
Query: 417 ETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAA 596
ETKNFDFEDVFVKIP AIAQ+SKEAGVEK IH+SHLNA+IKS SRYLR+KAVGEK VR A
Sbjct: 135 ETKNFDFEDVFVKIPQAIAQLSKEAGVEKFIHVSHLNANIKSSSRYLRNKAVGEKVVRDA 194
Query: 597 FPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIK 776
FPEA I+KPSDIFGREDRFLN FASM FG +PL SLG +TVKQPVY+VDVSKGI+NA+K
Sbjct: 195 FPEAIIVKPSDIFGREDRFLNSFASMHRFGPIPLGSLGWKTVKQPVYVVDVSKGIVNAVK 254
Query: 777 DPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWT 956
DPDA GK+FAFVGP+RYLLF LV+YIFAVA+R FLP+PLP FAYRWV R+FE+SPFEPW
Sbjct: 255 DPDANGKSFAFVGPSRYLLFHLVKYIFAVAHRLFLPFPLPLFAYRWVARVFEISPFEPWI 314
Query: 957 TRDKVERVHMSDMTLPHLPGLEDLGIQATPLELKAIEVLRRHRTYRWLTSEMEDVKPAKT 1136
TRDKVER+H++DM LPHLPGLEDLGIQATPLELKAIEVLRRHRTYRWL++E+EDVKPAKT
Sbjct: 315 TRDKVERMHITDMKLPHLPGLEDLGIQATPLELKAIEVLRRHRTYRWLSAEIEDVKPAKT 374
Query: 1137 VNI 1145
VNI
Sbjct: 375 VNI 377
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,644,957
Number of extensions: 1630435
Number of successful extensions: 4473
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4472
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 428
Effective length of database: 14,770,016
Effective search space: 6321566848
Effective search space used: 6321566848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012443
(1607 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 718 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 718 bits (362), Expect = 0.0
Identities = 362/362 (100%)
Strand = Plus / Minus
Query: 977 ggttcacatgtcagacatgacactgcctcacctgcccggcttggaagaccttggcattca 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67966271 ggttcacatgtcagacatgacactgcctcacctgcccggcttggaagaccttggcattca 67966212
Query: 1037 ggccacacccctggagctcaaggccatcgaggtgctgcggcgtcaccgcacataccgctg 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67966211 ggccacacccctggagctcaaggccatcgaggtgctgcggcgtcaccgcacataccgctg 67966152
Query: 1097 gctgacttcagagatggaagatgtgaaaccagccaagacagttaatatttagaggcccct 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67966151 gctgacttcagagatggaagatgtgaaaccagccaagacagttaatatttagaggcccct 67966092
Query: 1157 gagctgcctgtggttttggtgtcatttgggtcacctggctagtgaccaagccacctatgt 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67966091 gagctgcctgtggttttggtgtcatttgggtcacctggctagtgaccaagccacctatgt 67966032
Query: 1217 tagagcattctgtacatattgagaagagccctctattaaaacatcggagctgaaattctg 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67966031 tagagcattctgtacatattgagaagagccctctattaaaacatcggagctgaaattctg 67965972
Query: 1277 tgacaacattttctttctagatttatataatgataaattcagccatctaaaatttgagca 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67965971 tgacaacattttctttctagatttatataatgataaattcagccatctaaaatttgagca 67965912
Query: 1337 ta 1338
||
Sbjct: 67965911 ta 67965910
Score = 343 bits (173), Expect = 2e-91
Identities = 173/173 (100%)
Strand = Plus / Minus
Query: 64 gttcttgtcttgctgcagtagccacatcagtgtcttatggccctccccagcgccagcttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67988532 gttcttgtcttgctgcagtagccacatcagtgtcttatggccctccccagcgccagcttc 67988473
Query: 124 atcacgcgctcatccctcatgggaaaggtgggcgttcctcagtcagtgggattgtggcca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67988472 atcacgcgctcatccctcatgggaaaggtgggcgttcctcagtcagtgggattgtggcca 67988413
Query: 184 ctgtgtttggagcaacaggattcctgggccgctatgttgtcaaccaccttggt 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67988412 ctgtgtttggagcaacaggattcctgggccgctatgttgtcaaccaccttggt 67988360
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 425 aaattttgattttgaggatgttttcgtaaagattccccatgcaattgctcaagtgtccaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67981660 aaattttgattttgaggatgttttcgtaaagattccccatgcaattgctcaagtgtccaa 67981601
Query: 485 ggaagccggagttgaaaaacttattcacatttctcacctgaatgctgatattaaaagccc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67981600 ggaagccggagttgaaaaacttattcacatttctcacctgaatgctgatattaaaagccc 67981541
Query: 545 ctctaggtatctgagaagtaagg 567
|||||||||||||||||||||||
Sbjct: 67981540 ctctaggtatctgagaagtaagg 67981518
Score = 214 bits (108), Expect = 1e-52
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 565 aggccgttggggagaaagaggtgagagctgcctttccagaagccactatcataaagccat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67980732 aggccgttggggagaaagaggtgagagctgcctttccagaagccactatcataaagccat 67980673
Query: 625 cggacatctttggaagagaggacagattcctcaattattttgcaagta 672
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67980672 cggacatctttggaagagaggacagattcctcaattattttgcaagta 67980625
Score = 198 bits (100), Expect = 7e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 234 ggtcgcatggggtcacaggtgatcgtaccctaccggtgtgagccatatgataccatgcat 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67988038 ggtcgcatggggtcacaggtgatcgtaccctaccggtgtgagccatatgataccatgcat 67987979
Query: 294 ctccggcccatgggtgacctgggccagattatctttatgg 333
||||||||||||||||||||||||||||||||||||||||
Sbjct: 67987978 ctccggcccatgggtgacctgggccagattatctttatgg 67987939
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 814 ggcccaatcggtaccttctctttgacctggtgcagtatatctttgccgtggcctacagac 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67972071 ggcccaatcggtaccttctctttgacctggtgcagtatatctttgccgtggcctacagac 67972012
Query: 874 ccttcctcccttaccctttgccacattttgcctatcg 910
|||||||||||||||||||||||||||||||||||||
Sbjct: 67972011 ccttcctcccttaccctttgccacattttgcctatcg 67971975
Score = 184 bits (93), Expect = 1e-43
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 332 ggaatggaacgggaaagacaaggactctatccggaaggtggtggaacacagcaatgtggt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67983357 ggaatggaacgggaaagacaaggactctatccggaaggtggtggaacacagcaatgtggt 67983298
Query: 392 catcaaccttgttgggcgagaatgggagaccaa 424
|||||||||||||||||||||||||||||||||
Sbjct: 67983297 catcaaccttgttgggcgagaatgggagaccaa 67983265
Score = 157 bits (79), Expect = 2e-35
Identities = 82/83 (98%)
Strand = Plus / Minus
Query: 733 tatatattgtggatgtatccaaaggaattattaatgcaattaaggatccagatgccaaag 792
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67975153 tatagattgtggatgtatccaaaggaattattaatgcaattaaggatccagatgccaaag 67975094
Query: 793 ggaaaacgtttgcctttgttggg 815
|||||||||||||||||||||||
Sbjct: 67975093 ggaaaacgtttgcctttgttggg 67975071
Score = 139 bits (70), Expect = 5e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 910 gatgggtaggtcgactctttgaagtgagtccgttcgagccctggaccacgagggataagg 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67969390 gatgggtaggtcgactctttgaagtgagtccgttcgagccctggaccacgagggataagg 67969331
Query: 970 tggaacgggt 979
||||||||||
Sbjct: 67969330 tggaacgggt 67969321
Score = 135 bits (68), Expect = 8e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 670 gtatgcgctggtttggtggtgtccctcttatttccttgggcaaggagacagtgaaacaac 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67976486 gtatgcgctggtttggtggtgtccctcttatttccttgggcaaggagacagtgaaacaac 67976427
Query: 730 cagtatat 737
||||||||
Sbjct: 67976426 cagtatat 67976419
Score = 129 bits (65), Expect = 5e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 1 gattgtgggagaagatggcggcggccgttcacccccgggttgtccgggccgtgccaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67994533 gattgtgggagaagatggcggcggccgttcacccccgggttgtccgggccgtgccaatgt 67994474
Query: 61 cacgt 65
|||||
Sbjct: 67994473 cacgt 67994469
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,848,382
Number of extensions: 239
Number of successful extensions: 239
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 11
Length of query: 1607
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1585
Effective length of database: 2,808,408,574
Effective search space: 4451327589790
Effective search space used: 4451327589790
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)