Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012444
(1027 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003906.1| transketolase [Bos taurus]. 503 e-142
Alignment gi|NP_001039490.1| transketolase-like protein 2 [Bos taurus]. 369 e-102
Alignment gi|NP_001039437.1| transketolase-like protein 1 [Bos taurus]. 287 9e-78
>ref|NP_001003906.1| transketolase [Bos taurus].
Length = 623
Score = 503 bits (1294), Expect = e-142
Identities = 244/283 (86%), Positives = 263/283 (92%)
Frame = +1
Query: 166 MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 345
MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA
Sbjct: 1 MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 60
Query: 346 QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 525
DPRNPHNDRFVLSKGHAAPILY+VWAEAGFLPE+ELLNLRKI+SDLDGHPVPKQAFTDV
Sbjct: 61 LDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLPESELLNLRKINSDLDGHPVPKQAFTDV 120
Query: 526 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 705
ATGSLGQGLGAACGMAYTGKYFDKASYRVYC+LGDGELSEG+VWEAMAFA IYKLDNLVA
Sbjct: 121 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCMLGDGELSEGSVWEAMAFASIYKLDNLVA 180
Query: 706 ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKALGPVKNQPTAIIA 885
ILDINRLGQSDPAPLQHQMD+YQKRCEAFGW+A+IVDGHSVEELCKA G VKNQPTAIIA
Sbjct: 181 ILDINRLGQSDPAPLQHQMDIYQKRCEAFGWNAVIVDGHSVEELCKAFGQVKNQPTAIIA 240
Query: 886 KTFQGRKHHRNKR*GFWHGKPLPKTWLIKSSRKSTGKLRTKRK 1014
KTF+GR + WHGKPLPK + ++ +G++++K+K
Sbjct: 241 KTFKGRGITGIEDKESWHGKPLPKNMADQIIQEISGQIQSKKK 283
>ref|NP_001039490.1| transketolase-like protein 2 [Bos taurus].
Length = 626
Score = 369 bits (946), Expect = e-102
Identities = 179/282 (63%), Positives = 215/282 (76%), Gaps = 3/282 (1%)
Frame = +1
Query: 187 DQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRNPH 366
D +Q L+D ANRLR+ SI+AT A+GSGHPTSCCSAAEI++VLFFHTMRY+ +P +P
Sbjct: 8 DATTVQVLQDLANRLRVHSIRATCASGSGHPTSCCSAAEIVSVLFFHTMRYRQTEPAHPD 67
Query: 367 NDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQ 546
NDRFVLSKGHAAP+LY+ W EAG + E +LLNLR I DL+GHP P+ +F DVATGSLGQ
Sbjct: 68 NDRFVLSKGHAAPLLYAAWVEAGSISEPDLLNLRTIHCDLEGHPTPRLSFVDVATGSLGQ 127
Query: 547 GLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDINRL 726
GLGAACGMAYTGKY DKASYRV+CLLGDGE SEG+VWEA+AFA Y LDNLVA+ D+NRL
Sbjct: 128 GLGAACGMAYTGKYLDKASYRVFCLLGDGESSEGSVWEALAFASHYGLDNLVAVFDVNRL 187
Query: 727 GQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKALGPV---KNQPTAIIAKTFQ 897
GQS APL+H D+Y+ RCEAFGW+ +VDGH VE LC+A KN+PTAIIAKT++
Sbjct: 188 GQSGVAPLKHCTDIYRNRCEAFGWNTYLVDGHDVEALCQAFSQAAQGKNKPTAIIAKTYK 247
Query: 898 GRKHHRNKR*GFWHGKPLPKTWLIKSSRKSTGKLRTKRKSWP 1023
GR + WHGKPLPK + R +++T R P
Sbjct: 248 GRGIPNVEDAENWHGKPLPKERADEIIRLIKSQIKTNRNLLP 289
>ref|NP_001039437.1| transketolase-like protein 1 [Bos taurus].
Length = 596
Score = 287 bits (735), Expect = 9e-78
Identities = 148/262 (56%), Positives = 175/262 (66%), Gaps = 3/262 (1%)
Frame = +1
Query: 181 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 360
KPD + LQ L+D ANRLRI SI+AT A+ SGHP SC SAAEIM+VLFFH MRYK DP+N
Sbjct: 15 KPDSKTLQILRDMANRLRIHSIRATCASSSGHPISCSSAAEIMSVLFFHVMRYKQADPKN 74
Query: 361 PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 540
P NDRF+LSK + +F DVATG L
Sbjct: 75 PDNDRFILSK--------------------------------------RLSFVDVATGWL 96
Query: 541 GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 720
GQGLGAACGMAYTGKYFDKASYRV+CL+GD E EG+VWEA+AFA Y LDNLVAI D+N
Sbjct: 97 GQGLGAACGMAYTGKYFDKASYRVFCLVGDVESWEGSVWEALAFASHYSLDNLVAIFDVN 156
Query: 721 RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAL---GPVKNQPTAIIAKT 891
RL S PL+H +DVYQKRCEAFGW+ ++VDG VE LC+ +KN+PTA++AKT
Sbjct: 157 RLTHSTTLPLEHSIDVYQKRCEAFGWNTLVVDGRDVEALCQVFWQAAQMKNKPTAVVAKT 216
Query: 892 FQGRKHHRNKR*GFWHGKPLPK 957
F+GR + WHGKP+PK
Sbjct: 217 FKGRGIPSVEDAENWHGKPMPK 238
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,351,705
Number of extensions: 1139788
Number of successful extensions: 4969
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4938
Number of HSP's successfully gapped: 4
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012444
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012444
(1027 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533792.2| PREDICTED: similar to Transketolase (TK) [Canis... 424 e-119
Alignment gi|XP_538204.2| PREDICTED: similar to transketolase-like 1 [Can... 293 2e-79
>ref|XP_533792.2| PREDICTED: similar to Transketolase (TK) [Canis familiaris].
Length = 619
Score = 424 bits (1090), Expect = e-119
Identities = 202/250 (80%), Positives = 223/250 (89%)
Frame = +1
Query: 265 GSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLP 444
G GHPTSCCSAAEIMAVLFFHTMRYK QDPRNPHNDRFVLSKGHAAPILY+VWAEAGFL
Sbjct: 5 GLGHPTSCCSAAEIMAVLFFHTMRYKPQDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLT 64
Query: 445 EAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLL 624
E ELLNLRKI+SDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYC++
Sbjct: 65 EEELLNLRKITSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCMM 124
Query: 625 GDGELSEGAVWEAMAFAGIYKLDNLVAILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHA 804
GDGELSEG+VWEAMAFA IYKLDNL+AILDINRLGQSDP PLQHQ+DVYQKRCE+FGWHA
Sbjct: 125 GDGELSEGSVWEAMAFASIYKLDNLIAILDINRLGQSDPTPLQHQVDVYQKRCESFGWHA 184
Query: 805 IIVDGHSVEELCKALGPVKNQPTAIIAKTFQGRKHHRNKR*GFWHGKPLPKTWLIKSSRK 984
+IVDGHSVEELCKA G K+QPTAIIAKTF+GR + WHGKPLPK + ++
Sbjct: 185 VIVDGHSVEELCKAFGQAKHQPTAIIAKTFKGRGIPGIEDKDGWHGKPLPKNMADQIVQE 244
Query: 985 STGKLRTKRK 1014
++++++K
Sbjct: 245 IYNQIQSQKK 254
>ref|XP_538204.2| PREDICTED: similar to transketolase-like 1 [Canis familiaris].
Length = 596
Score = 293 bits (750), Expect = 2e-79
Identities = 149/262 (56%), Positives = 176/262 (67%), Gaps = 3/262 (1%)
Frame = +1
Query: 181 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 360
KPD + LQ L+D ANRLRI SI+AT + SGHPTSC SAAEIM+VLFFH MRYK +DP N
Sbjct: 15 KPDSKTLQVLRDMANRLRIHSIRATCVSSSGHPTSCSSAAEIMSVLFFHIMRYKQEDPEN 74
Query: 361 PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 540
P NDRF+ SK + +F DVATG L
Sbjct: 75 PDNDRFIASK--------------------------------------RLSFVDVATGWL 96
Query: 541 GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 720
GQGLGAACGMAYTGKYFDKASYRV+CL+GDGE SEG+VWEA+AFA Y LDNLVAI D+N
Sbjct: 97 GQGLGAACGMAYTGKYFDKASYRVFCLMGDGESSEGSVWEALAFASHYNLDNLVAIFDVN 156
Query: 721 RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAL---GPVKNQPTAIIAKT 891
R+G S PL+H +D+YQKRCEAFGW+ +VDG VE LC+ VKN+PTA++AKT
Sbjct: 157 RVGHSGGLPLEHCIDIYQKRCEAFGWNTYVVDGRDVEALCQVFWQASEVKNKPTAVVAKT 216
Query: 892 FQGRKHHRNKR*GFWHGKPLPK 957
F+GR + WHGKP+PK
Sbjct: 217 FKGRGIPSVEDAENWHGKPMPK 238
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,033,109
Number of extensions: 1179044
Number of successful extensions: 5163
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5110
Number of HSP's successfully gapped: 3
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012444
(1027 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106151.1| transketolase [Sus scrofa]. 511 e-145
Alignment gi|XP_003362245.1| PREDICTED: LOW QUALITY PROTEIN: transketolas... 248 4e-66
>ref|NP_001106151.1| transketolase [Sus scrofa].
Length = 623
Score = 511 bits (1316), Expect = e-145
Identities = 252/283 (89%), Positives = 262/283 (92%)
Frame = +1
Query: 166 MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 345
MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA
Sbjct: 1 MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 60
Query: 346 QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 525
QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV
Sbjct: 61 QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 120
Query: 526 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 705
ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA
Sbjct: 121 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 180
Query: 706 ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKALGPVKNQPTAIIA 885
ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKA G VKNQPTAIIA
Sbjct: 181 ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQVKNQPTAIIA 240
Query: 886 KTFQGRKHHRNKR*GFWHGKPLPKTWLIKSSRKSTGKLRTKRK 1014
KTF+GR + WHGKPLP+ + ++ +++ K+K
Sbjct: 241 KTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKK 283
>ref|XP_003362245.1| PREDICTED: LOW QUALITY PROTEIN: transketolase-like protein 1-like
[Sus scrofa].
Length = 557
Score = 248 bits (633), Expect = 4e-66
Identities = 128/238 (53%), Positives = 150/238 (63%), Gaps = 3/238 (1%)
Frame = +1
Query: 253 TTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRNPHNDRFVLSKGHAAPILYSVWAEA 432
T A HPTSC SAAEIM+VL FH M+YK DP NP NDR VLSK
Sbjct: 2 TCAVSFSHPTSCSSAAEIMSVLCFHVMKYKQTDPENPDNDRLVLSK-------------- 47
Query: 433 GFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRV 612
+ +F DVA G LGQGLGAACGMAYTGKYFDKASYRV
Sbjct: 48 ------------------------RLSFVDVAIGWLGQGLGAACGMAYTGKYFDKASYRV 83
Query: 613 YCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDINRLGQSDPAPLQHQMDVYQKRCEAF 792
+CL+GDGE SEG+VWEA+AFA Y LDNLVA+ D+NRL S PL+H +DVYQKRCEAF
Sbjct: 84 FCLMGDGESSEGSVWEALAFASHYSLDNLVAVFDVNRLSHSGTLPLEHCIDVYQKRCEAF 143
Query: 793 GWHAIIVDGHSVEELCKAL---GPVKNQPTAIIAKTFQGRKHHRNKR*GFWHGKPLPK 957
GW +VDG VE LC+ +K++PTA++AKTF+GR + WHGKP+PK
Sbjct: 144 GWKTFVVDGRDVEALCQVFWQASQMKSKPTAVVAKTFKGRGVPSVEDAENWHGKPMPK 201
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,096,027
Number of extensions: 738553
Number of successful extensions: 3219
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3197
Number of HSP's successfully gapped: 3
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012444
(1027 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033414.1| transketolase [Mus musculus]. 496 e-140
Alignment gi|NP_083203.2| transketolase-like protein 2 [Mus musculus]. 374 e-104
Alignment gi|NP_113556.2| transketolase-like protein 1 [Mus musculus]. 245 5e-65
>ref|NP_033414.1| transketolase [Mus musculus].
Length = 623
Score = 496 bits (1276), Expect = e-140
Identities = 241/283 (85%), Positives = 258/283 (91%)
Frame = +1
Query: 166 MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 345
ME YHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA
Sbjct: 1 MEGYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 60
Query: 346 QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 525
DPRNPHNDRFVLSKGHAAPILY+VWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV
Sbjct: 61 LDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 120
Query: 526 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 705
ATGSLGQGLGAACGMAYTGKYFDKASYRVYC+LGDGE+SEG+VWEAMAFAGIYKLDNLVA
Sbjct: 121 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCMLGDGEVSEGSVWEAMAFAGIYKLDNLVA 180
Query: 706 ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKALGPVKNQPTAIIA 885
I DINRLGQSDPAPLQHQ+D+YQKRCEAFGWH IIVDGHSVEELCKA G K+QPTAIIA
Sbjct: 181 IFDINRLGQSDPAPLQHQVDIYQKRCEAFGWHTIIVDGHSVEELCKAFGQAKHQPTAIIA 240
Query: 886 KTFQGRKHHRNKR*GFWHGKPLPKTWLIKSSRKSTGKLRTKRK 1014
KTF+GR + WHGKPLPK + ++ ++++K+K
Sbjct: 241 KTFKGRGITGIEDKEAWHGKPLPKNMAEQIIQEIYSQVQSKKK 283
>ref|NP_083203.2| transketolase-like protein 2 [Mus musculus].
Length = 627
Score = 374 bits (961), Expect = e-104
Identities = 184/284 (64%), Positives = 215/284 (75%), Gaps = 3/284 (1%)
Frame = +1
Query: 181 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 360
K + Q L+D ANRLRI SI+AT A SGHPTSCCS AEIMAVLFFHTMRYK DP +
Sbjct: 8 KLESDTFQVLQDVANRLRIHSIRATCACSSGHPTSCCSVAEIMAVLFFHTMRYKQADPEH 67
Query: 361 PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 540
P NDRFVLSKGHAAPILY+VW E G + E++LLNLRKI DL+GHP P+ +F DVATGSL
Sbjct: 68 PDNDRFVLSKGHAAPILYAVWVEVGRICESDLLNLRKIHCDLEGHPTPRLSFVDVATGSL 127
Query: 541 GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 720
GQGLGAACGMAYTGKYFDKASYRV+CL+GDGE SEG+VWEA+AFA Y LDNLVAI D+N
Sbjct: 128 GQGLGAACGMAYTGKYFDKASYRVFCLMGDGESSEGSVWEALAFASHYNLDNLVAIFDVN 187
Query: 721 RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAL---GPVKNQPTAIIAKT 891
RLGQS APL+H VY+KRC+AFGW+ +VDGH VE LC+A VKN+PTA+IAKT
Sbjct: 188 RLGQSGTAPLEHCTAVYEKRCQAFGWNTYVVDGHDVEALCQAFWKAAQVKNKPTALIAKT 247
Query: 892 FQGRKHHRNKR*GFWHGKPLPKTWLIKSSRKSTGKLRTKRKSWP 1023
F+GR + WHGKP+PK + +++T R P
Sbjct: 248 FKGRGIPNVEDAENWHGKPMPKDRADGIVKLIENRIQTNRNLTP 291
>ref|NP_113556.2| transketolase-like protein 1 [Mus musculus].
Length = 595
Score = 245 bits (625), Expect = 5e-65
Identities = 130/261 (49%), Positives = 166/261 (63%), Gaps = 3/261 (1%)
Frame = +1
Query: 184 PDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRNP 363
PD++ LQ L+D ANRLRI SI+AT ++ + + C S AEIM+VLFF+TMRYK +DP NP
Sbjct: 16 PDEKTLQVLRDMANRLRIRSIKATNSSTTSYLIPC-SNAEIMSVLFFYTMRYKQEDPENP 74
Query: 364 HNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLG 543
NDR +LSKG LP F +VATG G
Sbjct: 75 DNDRCILSKG---------------LP-----------------------FVNVATGWPG 96
Query: 544 QGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDINR 723
QGLGAACGMAYTGKYFD+ASYRV+CLLGD E +EG+VWEA AFA Y LDNL+AI D+NR
Sbjct: 97 QGLGAACGMAYTGKYFDQASYRVFCLLGDEESTEGSVWEAFAFASYYNLDNLMAIFDVNR 156
Query: 724 LGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAL---GPVKNQPTAIIAKTF 894
+G S ++H + +YQKRCEAFGW+ +VDG V+ LC V+ +PTA++AKTF
Sbjct: 157 IGHSSSMSVEHCIAIYQKRCEAFGWNTYVVDGRDVKTLCHVFSQAAQVRGKPTAVVAKTF 216
Query: 895 QGRKHHRNKR*GFWHGKPLPK 957
+ R + W+G+P+PK
Sbjct: 217 KARGMPNVEDAESWYGRPMPK 237
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,668,625
Number of extensions: 949822
Number of successful extensions: 4223
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4158
Number of HSP's successfully gapped: 4
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012444
(1027 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001128527.1| transketolase [Homo sapiens]. 499 e-141
Alignment gi|NP_001055.1| transketolase [Homo sapiens]. 499 e-141
Alignment gi|NP_115512.3| transketolase-like protein 2 [Homo sapiens]. 368 e-102
Alignment gi|NP_036385.3| transketolase-like protein 1 isoform a [Homo sa... 273 1e-73
Alignment gi|NP_001139405.1| transketolase-like protein 1 isoform b [Homo... 254 7e-68
Alignment gi|NP_001139406.1| transketolase-like protein 1 isoform c [Homo... 224 1e-58
>ref|NP_001128527.1| transketolase [Homo sapiens].
Length = 623
Score = 499 bits (1285), Expect = e-141
Identities = 244/283 (86%), Positives = 260/283 (91%)
Frame = +1
Query: 166 MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 345
ME+YHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYK+
Sbjct: 1 MESYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKS 60
Query: 346 QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 525
QDPRNPHNDRFVLSKGHAAPILY+VWAEAGFL EAELLNLRKISSDLDGHPVPKQAFTDV
Sbjct: 61 QDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDV 120
Query: 526 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 705
ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEG+VWEAMAFA IYKLDNLVA
Sbjct: 121 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVA 180
Query: 706 ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKALGPVKNQPTAIIA 885
ILDINRLGQSDPAPLQHQMD+YQKRCEAFGWHAIIVDGHSVEELCKA G K+QPTAIIA
Sbjct: 181 ILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKHQPTAIIA 240
Query: 886 KTFQGRKHHRNKR*GFWHGKPLPKTWLIKSSRKSTGKLRTKRK 1014
KTF+GR + WHGKPLPK + ++ ++++K+K
Sbjct: 241 KTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQSKKK 283
>ref|NP_001055.1| transketolase [Homo sapiens].
Length = 623
Score = 499 bits (1285), Expect = e-141
Identities = 244/283 (86%), Positives = 260/283 (91%)
Frame = +1
Query: 166 MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 345
ME+YHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYK+
Sbjct: 1 MESYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKS 60
Query: 346 QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 525
QDPRNPHNDRFVLSKGHAAPILY+VWAEAGFL EAELLNLRKISSDLDGHPVPKQAFTDV
Sbjct: 61 QDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDV 120
Query: 526 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 705
ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEG+VWEAMAFA IYKLDNLVA
Sbjct: 121 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVA 180
Query: 706 ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKALGPVKNQPTAIIA 885
ILDINRLGQSDPAPLQHQMD+YQKRCEAFGWHAIIVDGHSVEELCKA G K+QPTAIIA
Sbjct: 181 ILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKHQPTAIIA 240
Query: 886 KTFQGRKHHRNKR*GFWHGKPLPKTWLIKSSRKSTGKLRTKRK 1014
KTF+GR + WHGKPLPK + ++ ++++K+K
Sbjct: 241 KTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQSKKK 283
>ref|NP_115512.3| transketolase-like protein 2 [Homo sapiens].
Length = 626
Score = 368 bits (944), Expect = e-102
Identities = 174/262 (66%), Positives = 208/262 (79%), Gaps = 3/262 (1%)
Frame = +1
Query: 181 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 360
KPD + +Q L+DTANRLRI SI+AT A+GSG TSCCSAAE+++VLFFHTM+YK DP +
Sbjct: 7 KPDVKTVQVLRDTANRLRIHSIRATCASGSGQLTSCCSAAEVVSVLFFHTMKYKQTDPEH 66
Query: 361 PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 540
P NDRF+LS+GHAAPILY+ W E G + E++LLNLRK+ SDL+ HP P+ F DVATGSL
Sbjct: 67 PDNDRFILSRGHAAPILYAAWVEVGDISESDLLNLRKLHSDLERHPTPRLPFVDVATGSL 126
Query: 541 GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 720
GQGLG ACGMAYTGKY DKASYRV+CL+GDGE SEG+VWEA AFA Y LDNLVA+ D+N
Sbjct: 127 GQGLGTACGMAYTGKYLDKASYRVFCLMGDGESSEGSVWEAFAFASHYNLDNLVAVFDVN 186
Query: 721 RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAL---GPVKNQPTAIIAKT 891
RLGQS PAPL+H D+YQ CEAFGW+ +VDGH VE LC+A VKN+PTAI+AKT
Sbjct: 187 RLGQSGPAPLEHGADIYQNCCEAFGWNTYLVDGHDVEALCQAFWQASQVKNKPTAIVAKT 246
Query: 892 FQGRKHHRNKR*GFWHGKPLPK 957
F+GR + WHGKP+PK
Sbjct: 247 FKGRGIPNIEDAENWHGKPVPK 268
>ref|NP_036385.3| transketolase-like protein 1 isoform a [Homo sapiens].
Length = 596
Score = 273 bits (699), Expect = 1e-73
Identities = 138/262 (52%), Positives = 172/262 (65%), Gaps = 3/262 (1%)
Frame = +1
Query: 181 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 360
+PD+ LQ L+D A+RLRI SI+AT + SGHPTSC S++EIM+VLFF+ MRYK DP N
Sbjct: 15 RPDRGTLQVLQDMASRLRIHSIRATCSTSSGHPTSCSSSSEIMSVLFFYIMRYKQSDPEN 74
Query: 361 PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 540
P NDRFVL+K + +F DVATG L
Sbjct: 75 PDNDRFVLAK--------------------------------------RLSFVDVATGWL 96
Query: 541 GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 720
GQGLG ACGMAYTGKYFD+ASYRV+CL+ DGE SEG+VWEAMAFA Y LDNLVAI D+N
Sbjct: 97 GQGLGVACGMAYTGKYFDRASYRVFCLMSDGESSEGSVWEAMAFASYYSLDNLVAIFDVN 156
Query: 721 RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAL---GPVKNQPTAIIAKT 891
RLG S P +H +++YQ+RCEAFGW+ +VDG VE LC+ VK++PTA++AKT
Sbjct: 157 RLGHSGALPAEHCINIYQRRCEAFGWNTYVVDGRDVEALCQVFWQASQVKHKPTAVVAKT 216
Query: 892 FQGRKHHRNKR*GFWHGKPLPK 957
F+GR + WH KP+P+
Sbjct: 217 FKGRGTPSIEDAESWHAKPMPR 238
>ref|NP_001139405.1| transketolase-like protein 1 isoform b [Homo sapiens].
Length = 590
Score = 254 bits (650), Expect = 7e-68
Identities = 133/262 (50%), Positives = 167/262 (63%), Gaps = 3/262 (1%)
Frame = +1
Query: 181 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 360
+PD+ LQ L+D A+RLRI SI+AT + SG S++EIM+VLFF+ MRYK DP N
Sbjct: 15 RPDRGTLQVLQDMASRLRIHSIRATCSTSSG------SSSEIMSVLFFYIMRYKQSDPEN 68
Query: 361 PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 540
P NDRFVL+K + +F DVATG L
Sbjct: 69 PDNDRFVLAK--------------------------------------RLSFVDVATGWL 90
Query: 541 GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 720
GQGLG ACGMAYTGKYFD+ASYRV+CL+ DGE SEG+VWEAMAFA Y LDNLVAI D+N
Sbjct: 91 GQGLGVACGMAYTGKYFDRASYRVFCLMSDGESSEGSVWEAMAFASYYSLDNLVAIFDVN 150
Query: 721 RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAL---GPVKNQPTAIIAKT 891
RLG S P +H +++YQ+RCEAFGW+ +VDG VE LC+ VK++PTA++AKT
Sbjct: 151 RLGHSGALPAEHCINIYQRRCEAFGWNTYVVDGRDVEALCQVFWQASQVKHKPTAVVAKT 210
Query: 892 FQGRKHHRNKR*GFWHGKPLPK 957
F+GR + WH KP+P+
Sbjct: 211 FKGRGTPSIEDAESWHAKPMPR 232
>ref|NP_001139406.1| transketolase-like protein 1 isoform c [Homo sapiens].
Length = 540
Score = 224 bits (570), Expect = 1e-58
Identities = 113/220 (51%), Positives = 139/220 (63%), Gaps = 3/220 (1%)
Frame = +1
Query: 307 MAVLFFHTMRYKAQDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDL 486
M+VLFF+ MRYK DP NP NDRFVL+K
Sbjct: 1 MSVLFFYIMRYKQSDPENPDNDRFVLAK-------------------------------- 28
Query: 487 DGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAM 666
+ +F DVATG LGQGLG ACGMAYTGKYFD+ASYRV+CL+ DGE SEG+VWEAM
Sbjct: 29 ------RLSFVDVATGWLGQGLGVACGMAYTGKYFDRASYRVFCLMSDGESSEGSVWEAM 82
Query: 667 AFAGIYKLDNLVAILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKA 846
AFA Y LDNLVAI D+NRLG S P +H +++YQ+RCEAFGW+ +VDG VE LC+
Sbjct: 83 AFASYYSLDNLVAIFDVNRLGHSGALPAEHCINIYQRRCEAFGWNTYVVDGRDVEALCQV 142
Query: 847 L---GPVKNQPTAIIAKTFQGRKHHRNKR*GFWHGKPLPK 957
VK++PTA++AKTF+GR + WH KP+P+
Sbjct: 143 FWQASQVKHKPTAVVAKTFKGRGTPSIEDAESWHAKPMPR 182
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,174,300
Number of extensions: 1147887
Number of successful extensions: 4643
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4608
Number of HSP's successfully gapped: 9
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012444
(1027 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 531 e-148
>Sscrofa_Chr13
|| Length = 218635234
Score = 531 bits (268), Expect = e-148
Identities = 271/272 (99%)
Strand = Plus / Minus
Query: 1 gatgctgacgccccgcccccacgggcggctctcaggagtcttaacgcgctcgcgctcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38447192 gatgctgacgccccgcccccacgggcggctctcaggagtcttaacgcgctcgcgctcaga 38447133
Query: 61 gcccgggctcggcctctgtctgtagctgcaggaatcgcttccctgcgctgcgtctccgca 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38447132 gcccgggctcggcctcagtctgtagctgcaggaatcgcttccctgcgctgcgtctccgca 38447073
Query: 121 tccgcgtcttcggcctccccacctgcccgcttgcccggctgcgccatggaggcctaccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38447072 tccgcgtcttcggcctccccacctgcccgcttgcccggctgcgccatggaggcctaccat 38447013
Query: 181 aagcctgaccagcagaagctgcaggccctgaaggacacggccaaccgcctgcgcatcagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38447012 aagcctgaccagcagaagctgcaggccctgaaggacacggccaaccgcctgcgcatcagc 38446953
Query: 241 tccatccaggccaccactgcggccggctccgg 272
||||||||||||||||||||||||||||||||
Sbjct: 38446952 tccatccaggccaccactgcggccggctccgg 38446921
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 600 cagctaccgcgtctattgcttgctgggagacggggagctgtcagagggcgccgtgtggga 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38427045 cagctaccgcgtctattgcttgctgggagacggggagctgtcagagggcgccgtgtggga 38426986
Query: 660 ggctatggccttcgcgggcatctacaagctggacaaccttgtcgccattcttgacatcaa 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38426985 ggctatggccttcgcgggcatctacaagctggacaaccttgtcgccattcttgacatcaa 38426926
Query: 720 ccgcctgggccagagcgaccccgccccgctgcagcaccagatggatgtctaccagaagcg 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38426925 ccgcctgggccagagcgaccccgccccgctgcagcaccagatggatgtctaccagaagcg 38426866
Query: 780 ctgcgaggcctttgg 794
|||||||||||||||
Sbjct: 38426865 ctgcgaggcctttgg 38426851
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 272 gccacccaacgtcatgctgcagtgctgccgagatcatggctgtcctctttttccacacca 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38432693 gccacccaacgtcatgctgcagtgctgccgagatcatggctgtcctctttttccacacca 38432634
Query: 332 tgcgctacaaggcccaggatccccggaaccctcacaatgaccgctttgtgctctccaagg 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38432633 tgcgctacaaggcccaggatccccggaaccctcacaatgaccgctttgtgctctccaagg 38432574
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 389 agggccacgcagcacctatcctgtattccgtgtgggctgaagccggcttcctgccagagg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38431813 agggccacgcagcacctatcctgtattccgtgtgggctgaagccggcttcctgccagagg 38431754
Query: 449 cagagctgctgaacctgaggaagatcagctctgacctggatgggcaccctgtcccg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38431753 cagagctgctgaacctgaggaagatcagctctgacctggatgggcaccctgtcccg 38431698
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 504 gaaacaagctttcactgatgtggccaccggatccctgggccagggccttggggccgcttg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38430778 gaaacaagctttcactgatgtggccaccggatccctgggccagggccttggggccgcttg 38430719
Query: 564 tgggatggcctacacaggcaaatacttcgacaaagccag 602
|||||||||||||||||||||||||||||||||||||||
Sbjct: 38430718 tgggatggcctacacaggcaaatacttcgacaaagccag 38430680
Score = 151 bits (76), Expect = 9e-34
Identities = 94/100 (94%)
Strand = Plus / Minus
Query: 794 gctggcacgccatcatcgtggacggacacagtgtggaagaactgtgcaaggccctcgggc 853
||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct: 38425095 gctggcacgccatcatcgtggacggacacagtgtggaggagctgtgcaaggccttcgggc 38425036
Query: 854 cagtcaagaaccaaccgacagccatcatcgccaagacctt 893
||||||||||| ||||||||||||||||||||||||||
Sbjct: 38425035 aggtcaagaaccagccgacagccatcatcgccaagacctt 38424996
Score = 127 bits (64), Expect = 1e-26
Identities = 108/120 (90%), Gaps = 2/120 (1%)
Strand = Plus / Minus
Query: 910 cacaggaataaaagataaggattct-ggcatgggaagcccctccccaaga-catggctga 967
||||||| || |||||||||| ||| |||||||||||||||||||| ||| |||||||||
Sbjct: 38423791 cacaggagtagaagataaggagtcttggcatgggaagcccctcccccagaacatggctga 38423732
Query: 968 tcaagtcatccaggaaatctacaggcaaattaagaacaaaaagaaaatcctggccactcc 1027
||| |||||||||||||||||||| || || ||||||||||||| ||||||||||||||
Sbjct: 38423731 tcaggtcatccaggaaatctacagccagatccagaacaaaaagaagatcctggccactcc 38423672
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,806,011
Number of extensions: 183
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 7
Length of query: 1027
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1006
Effective length of database: 2,808,413,156
Effective search space: 2825263634936
Effective search space used: 2825263634936
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)