Animal-Genome cDNA 20110601C-012445


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012445
         (2122 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001003906.1| transketolase [Bos taurus].                      1131   0.0  
Alignment   gi|NP_001039490.1| transketolase-like protein 2 [Bos taurus].        787   0.0  
Alignment   gi|NP_001039437.1| transketolase-like protein 1 [Bos taurus].        728   0.0  
Alignment   gi|XP_002683931.1| PREDICTED: putative chloroplast 1-deoxy-D-xy...    70   1e-11
Alignment   gi|XP_001257222.2| PREDICTED: 1-deoxyxylulose 5-phosphate synth...    70   1e-11

>ref|NP_001003906.1| transketolase [Bos taurus].
          Length = 623

 Score = 1131 bits (2925), Expect = 0.0
 Identities = 562/623 (90%), Positives = 586/623 (94%)
 Frame = +2

Query: 137  MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 316
            MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA
Sbjct: 1    MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 60

Query: 317  QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 496
             DPRNPHNDRFVLSKGHAAPILY+VWAEAGFLPE+ELLNLRKI+SDLDGHPVPKQAFTDV
Sbjct: 61   LDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLPESELLNLRKINSDLDGHPVPKQAFTDV 120

Query: 497  ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 676
            ATGSLGQGLGAACGMAYTGKYFDKASYRVYC+LGDGELSEG+VWEAMAFA IYKLDNLVA
Sbjct: 121  ATGSLGQGLGAACGMAYTGKYFDKASYRVYCMLGDGELSEGSVWEAMAFASIYKLDNLVA 180

Query: 677  ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQVKNQPTAIIA 856
            ILDINRLGQSDPAPLQHQMD+YQKRCEAFGW+A+IVDGHSVEELCKAFGQVKNQPTAIIA
Sbjct: 181  ILDINRLGQSDPAPLQHQMDIYQKRCEAFGWNAVIVDGHSVEELCKAFGQVKNQPTAIIA 240

Query: 857  KTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 1036
            KTFKGRGITG+EDKESWHGKPLP+NMADQ+IQEI  QIQ+KKKILATPP+EDAPSVDITN
Sbjct: 241  KTFKGRGITGIEDKESWHGKPLPKNMADQIIQEISGQIQSKKKILATPPEEDAPSVDITN 300

Query: 1037 IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 1216
            IRMPTPP+YKVGDKIATRKAYGQALAKLGHAS+RIIALDGDTKNSTFSELFKKEHPDRFI
Sbjct: 301  IRMPTPPNYKVGDKIATRKAYGQALAKLGHASNRIIALDGDTKNSTFSELFKKEHPDRFI 360

Query: 1217 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 1396
            ECYIAEQNMVSIAVGCATR+RTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS
Sbjct: 361  ECYIAEQNMVSIAVGCATRDRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 420

Query: 1397 IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 1576
            IGEDGPSQMALEDLAMFRS+PMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII
Sbjct: 421  IGEDGPSQMALEDLAMFRSIPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 480

Query: 1577 YNNNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPL 1756
            Y  +EDFQIGQAKVVLK+KDDQVTVIGAGVT               INIRVLDPFT+KPL
Sbjct: 481  YKQHEDFQIGQAKVVLKNKDDQVTVIGAGVTLHEALAAADLLKREKINIRVLDPFTIKPL 540

Query: 1757 DRKLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAE 1936
            D+KLILDSARATKGRILTVEDHYY               P VTVTRLAVSQVPRSGKPAE
Sbjct: 541  DKKLILDSARATKGRILTVEDHYYEGGIGEAVASAVVGEPGVTVTRLAVSQVPRSGKPAE 600

Query: 1937 LLKMFGIDKDAIARAVRGLVTKA 2005
            LLKMFGID+DAIA+AVRGLVT+A
Sbjct: 601  LLKMFGIDRDAIAQAVRGLVTRA 623


>ref|NP_001039490.1| transketolase-like protein 2 [Bos taurus].
          Length = 626

 Score =  787 bits (2032), Expect = 0.0
 Identities = 389/614 (63%), Positives = 471/614 (76%), Gaps = 4/614 (0%)
 Frame = +2

Query: 158  DQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRNPH 337
            D   +Q L+D ANRLR+ SI+AT A+GSGHPTSCCSAAEI++VLFFHTMRY+  +P +P 
Sbjct: 8    DATTVQVLQDLANRLRVHSIRATCASGSGHPTSCCSAAEIVSVLFFHTMRYRQTEPAHPD 67

Query: 338  NDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQ 517
            NDRFVLSKGHAAP+LY+ W EAG + E +LLNLR I  DL+GHP P+ +F DVATGSLGQ
Sbjct: 68   NDRFVLSKGHAAPLLYAAWVEAGSISEPDLLNLRTIHCDLEGHPTPRLSFVDVATGSLGQ 127

Query: 518  GLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDINRL 697
            GLGAACGMAYTGKY DKASYRV+CLLGDGE SEG+VWEA+AFA  Y LDNLVA+ D+NRL
Sbjct: 128  GLGAACGMAYTGKYLDKASYRVFCLLGDGESSEGSVWEALAFASHYGLDNLVAVFDVNRL 187

Query: 698  GQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQV---KNQPTAIIAKTFK 868
            GQS  APL+H  D+Y+ RCEAFGW+  +VDGH VE LC+AF Q    KN+PTAIIAKT+K
Sbjct: 188  GQSGVAPLKHCTDIYRNRCEAFGWNTYLVDGHDVEALCQAFSQAAQGKNKPTAIIAKTYK 247

Query: 869  GRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIRMP 1048
            GRGI  VED E+WHGKPLP+  AD++I+ I SQI+  + +L  PP E +P V ITNI+M 
Sbjct: 248  GRGIPNVEDAENWHGKPLPKERADEIIRLIKSQIKTNRNLLPKPPVEGSPPVSITNIKMT 307

Query: 1049 TPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIECYI 1228
              P YKVGDK+AT+KAYG ALAKLG A++R++ LDGD KNSTF E+FKKEHP+RFIEC+ 
Sbjct: 308  CLPDYKVGDKVATQKAYGLALAKLGLANERVVVLDGDPKNSTFFEIFKKEHPERFIECFA 367

Query: 1229 AEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGED 1408
            AEQNMVS+A+GCATR RT+ F +T  AF TRAFDQIRM AIS+SNINL GSHCGVS+GED
Sbjct: 368  AEQNMVSVALGCATRGRTITFVTTLGAFLTRAFDQIRMGAISQSNINLIGSHCGVSVGED 427

Query: 1409 GPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYNNN 1588
            GPSQMALEDLAMFRS+P  TVF PSD V+TE AV LAAN++G+CFIRT+R E A+IY   
Sbjct: 428  GPSQMALEDLAMFRSIPNCTVFLPSDAVSTEHAVYLAANSEGMCFIRTNRSETAVIYTPQ 487

Query: 1589 EDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDRKL 1768
            E F+IG+AKV+  S +D+VTVIGAGVT               I+I V+DPFT+KPLD   
Sbjct: 488  EHFEIGRAKVIRHSNNDKVTVIGAGVTLHEALAAADALSQQDISICVIDPFTIKPLDAAT 547

Query: 1769 ILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQV-PRSGKPAELLK 1945
            I+  A+AT GR++TVEDHY                P + V +L+VS V  R+ KP+ELL 
Sbjct: 548  IISCAKATDGRVVTVEDHYQEGGIGEAVCAAVSGEPAIHVHQLSVSGVSERNRKPSELLS 607

Query: 1946 MFGIDKDAIARAVR 1987
            +FG+    I  AV+
Sbjct: 608  IFGVSARHIIAAVK 621


>ref|NP_001039437.1| transketolase-like protein 1 [Bos taurus].
          Length = 596

 Score =  728 bits (1879), Expect = 0.0
 Identities = 367/620 (59%), Positives = 445/620 (71%), Gaps = 3/620 (0%)
 Frame = +2

Query: 152  KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 331
            KPD + LQ L+D ANRLRI SI+AT A+ SGHP SC SAAEIM+VLFFH MRYK  DP+N
Sbjct: 15   KPDSKTLQILRDMANRLRIHSIRATCASSSGHPISCSSAAEIMSVLFFHVMRYKQADPKN 74

Query: 332  PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 511
            P NDRF+LSK                                      + +F DVATG L
Sbjct: 75   PDNDRFILSK--------------------------------------RLSFVDVATGWL 96

Query: 512  GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 691
            GQGLGAACGMAYTGKYFDKASYRV+CL+GD E  EG+VWEA+AFA  Y LDNLVAI D+N
Sbjct: 97   GQGLGAACGMAYTGKYFDKASYRVFCLVGDVESWEGSVWEALAFASHYSLDNLVAIFDVN 156

Query: 692  RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAF---GQVKNQPTAIIAKT 862
            RL  S   PL+H +DVYQKRCEAFGW+ ++VDG  VE LC+ F    Q+KN+PTA++AKT
Sbjct: 157  RLTHSTTLPLEHSIDVYQKRCEAFGWNTLVVDGRDVEALCQVFWQAAQMKNKPTAVVAKT 216

Query: 863  FKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIR 1042
            FKGRGI  VED E+WHGKP+P+  AD +I+ I SQI+  K +    P ED+P ++I+ I 
Sbjct: 217  FKGRGIPSVEDAENWHGKPMPKERADAIIKLIESQIETNKSLEPKAPIEDSPQINISVIE 276

Query: 1043 MPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIEC 1222
            M +PP Y++ D IATRKA G ALAKLGHA+DR+I LDGDTKNSTFS++FK+EHP+RFIEC
Sbjct: 277  MTSPPDYEISDVIATRKACGLALAKLGHANDRVIVLDGDTKNSTFSDIFKREHPERFIEC 336

Query: 1223 YIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIG 1402
            +IAEQNMVS+A+GC TR RTV F  TFAAF TRAFDQIRM  IS++NINL GSHCGVSIG
Sbjct: 337  FIAEQNMVSVALGCVTRGRTVAFACTFAAFLTRAFDQIRMGGISQTNINLIGSHCGVSIG 396

Query: 1403 EDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYN 1582
            EDGPSQMALEDLAMFR++P  T+FYPSD ++TE AV LAAN KG+C+IRTSRPE AIIY 
Sbjct: 397  EDGPSQMALEDLAMFRAIPNCTIFYPSDAISTEHAVFLAANIKGMCYIRTSRPETAIIYT 456

Query: 1583 NNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDR 1762
              E F+IGQAKV+ +S +D++TV+GAG+T               I++RV+D FTVKPLD 
Sbjct: 457  PQESFEIGQAKVIRQSVNDKITVVGAGITLHEALAAADDLSKQGISLRVIDLFTVKPLDA 516

Query: 1763 KLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELL 1942
              I+ +A+AT G+I+TVEDHY                PD+ V  LAVS +PRSGKP++LL
Sbjct: 517  ATIISNAKATGGQIITVEDHYPEGGIGEAVSAAVSMEPDIVVHHLAVSGIPRSGKPSDLL 576

Query: 1943 KMFGIDKDAIARAVRGLVTK 2002
             MFGI    I  AV  ++ K
Sbjct: 577  DMFGISSKHIIWAVERILMK 596


>ref|XP_002683931.1| PREDICTED: putative chloroplast 1-deoxy-D-xylulose 5-phosphate
            synthase-like, partial [Bos taurus].
          Length = 409

 Score = 69.7 bits (169), Expect = 1e-11
 Identities = 88/391 (22%), Positives = 148/391 (37%), Gaps = 47/391 (12%)
 Frame = +2

Query: 455  LDGHPVPKQAFTDV-ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWE 631
            + G P   ++  D   T      + AA GMA   K      + V  ++GDG +S G  +E
Sbjct: 19   ISGFPQRAESVYDTFGTAHSSTSISAALGMALAAKRKGDNRHAV-AIIGDGAMSAGMAFE 77

Query: 632  AMAFAGIYKLDNLVAILDINRLGQSDPA-------------------------------P 718
            A+  AG+    NL+ +L+ N +  S P                                P
Sbjct: 78   ALNNAGVADC-NLLVVLNDNDMSISPPVGALNRYLAQLMSGQFYAAAKNVGKTVLRPVPP 136

Query: 719  LQHQMDVYQKRC----------EAFGWHAI-IVDGHSVEELCKAFGQVKNQ--PTAIIAK 859
            L      ++++           E FG++ I  +DGH ++ L      +K+   P  +   
Sbjct: 137  LLEFAKRFEQQAKGMVVPATLFEKFGFNYIGPIDGHDLDSLIPTLENIKSLKGPQFLHVV 196

Query: 860  TFKGRGITGVE-DKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 1036
            T KG+G    E D  ++HG                             P +  PSV +T 
Sbjct: 197  TKKGQGYKLAEADPVAYHG-----------------------------PGKFDPSVGLT- 226

Query: 1037 IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 1216
             +  TPP      K    + +GQ L  +     R++ +    +  +    F+K  PDR+ 
Sbjct: 227  -KPATPP------KQTFTQVFGQWLCDMAAQDPRLVGITPAMREGSGMVEFEKRFPDRYY 279

Query: 1217 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQ-IRMAAISESNINLCGSHCGV 1393
            +  IAEQ+ V+ A G A      P  + ++ F  R +DQ I   A+    +       G+
Sbjct: 280  DVGIAEQHAVTFAAGMACEG-VKPVVAIYSTFLQRGYDQLIHDVALQNLPVVFALDRAGL 338

Query: 1394 SIGEDGPSQMALEDLAMFRSVPMSTVFYPSD 1486
             +G DG +     D+   R +P  ++  P+D
Sbjct: 339  -VGADGATHAGAYDIPFVRCIPNMSMACPAD 368


>ref|XP_001257222.2| PREDICTED: 1-deoxyxylulose 5-phosphate synthase-like, partial [Bos
            taurus].
          Length = 414

 Score = 69.7 bits (169), Expect = 1e-11
 Identities = 88/391 (22%), Positives = 148/391 (37%), Gaps = 47/391 (12%)
 Frame = +2

Query: 455  LDGHPVPKQAFTDV-ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWE 631
            + G P   ++  D   T      + AA GMA   K      + V  ++GDG +S G  +E
Sbjct: 24   ISGFPQRAESVYDTFGTAHSSTSISAALGMALAAKRKGDNRHAV-AIIGDGAMSAGMAFE 82

Query: 632  AMAFAGIYKLDNLVAILDINRLGQSDPA-------------------------------P 718
            A+  AG+    NL+ +L+ N +  S P                                P
Sbjct: 83   ALNNAGVADC-NLLVVLNDNDMSISPPVGALNRYLAQLMSGQFYAAAKNVGKTVLRPVPP 141

Query: 719  LQHQMDVYQKRC----------EAFGWHAI-IVDGHSVEELCKAFGQVKNQ--PTAIIAK 859
            L      ++++           E FG++ I  +DGH ++ L      +K+   P  +   
Sbjct: 142  LLEFAKRFEQQAKGMVVPATLFEKFGFNYIGPIDGHDLDSLIPTLENIKSLKGPQFLHVV 201

Query: 860  TFKGRGITGVE-DKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 1036
            T KG+G    E D  ++HG                             P +  PSV +T 
Sbjct: 202  TKKGQGYKLAEADPVAYHG-----------------------------PGKFDPSVGLT- 231

Query: 1037 IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 1216
             +  TPP      K    + +GQ L  +     R++ +    +  +    F+K  PDR+ 
Sbjct: 232  -KPATPP------KQTFTQVFGQWLCDMAAQDPRLVGITPAMREGSGMVEFEKRFPDRYY 284

Query: 1217 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQ-IRMAAISESNINLCGSHCGV 1393
            +  IAEQ+ V+ A G A      P  + ++ F  R +DQ I   A+    +       G+
Sbjct: 285  DVGIAEQHAVTFAAGMACEG-VKPVVAIYSTFLQRGYDQLIHDVALQNLPVVFALDRAGL 343

Query: 1394 SIGEDGPSQMALEDLAMFRSVPMSTVFYPSD 1486
             +G DG +     D+   R +P  ++  P+D
Sbjct: 344  -VGADGATHAGAYDIPFVRCIPNMSMACPAD 373


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 84,663,302
Number of extensions: 2464828
Number of successful extensions: 13033
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 12835
Number of HSP's successfully gapped: 6
Length of query: 707
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 598
Effective length of database: 14,074,782
Effective search space: 8416719636
Effective search space used: 8416719636
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012445

Animal-Genome cDNA 20110601C-012445


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012445
         (2122 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_533792.2| PREDICTED: similar to Transketolase (TK) [Canis...  1017   0.0  
Alignment   gi|XP_538204.2| PREDICTED: similar to transketolase-like 1 [Can...   739   0.0  
Alignment   gi|XP_861013.1| PREDICTED: hypothetical protein XP_855920 [Cani...    50   9e-06

>ref|XP_533792.2| PREDICTED: similar to Transketolase (TK) [Canis familiaris].
          Length = 619

 Score = 1017 bits (2630), Expect = 0.0
 Identities = 503/615 (81%), Positives = 538/615 (87%), Gaps = 25/615 (4%)
 Frame = +2

Query: 236  GSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLP 415
            G GHPTSCCSAAEIMAVLFFHTMRYK QDPRNPHNDRFVLSKGHAAPILY+VWAEAGFL 
Sbjct: 5    GLGHPTSCCSAAEIMAVLFFHTMRYKPQDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLT 64

Query: 416  EAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLL 595
            E ELLNLRKI+SDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYC++
Sbjct: 65   EEELLNLRKITSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCMM 124

Query: 596  GDGELSEGAVWEAMAFAGIYKLDNLVAILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHA 775
            GDGELSEG+VWEAMAFA IYKLDNL+AILDINRLGQSDP PLQHQ+DVYQKRCE+FGWHA
Sbjct: 125  GDGELSEGSVWEAMAFASIYKLDNLIAILDINRLGQSDPTPLQHQVDVYQKRCESFGWHA 184

Query: 776  IIVDGHSVEELCKAFGQVKNQPTAIIAKTFKGRGITGVEDKESWHGKPLPQNMADQVIQE 955
            +IVDGHSVEELCKAFGQ K+QPTAIIAKTFKGRGI G+EDK+ WHGKPLP+NMADQ++QE
Sbjct: 185  VIVDGHSVEELCKAFGQAKHQPTAIIAKTFKGRGIPGIEDKDGWHGKPLPKNMADQIVQE 244

Query: 956  IYSQIQNKKKILATPPQEDAPSVDITNIRMPTPPSYKVGDKIATRKAYGQALAKLGHASD 1135
            IY+QIQ++KKIL TPPQEDAPSV+ITNIRMP+PPSYKVGDKIATRKAYGQALAKLG A D
Sbjct: 245  IYNQIQSQKKILVTPPQEDAPSVNITNIRMPSPPSYKVGDKIATRKAYGQALAKLGRAHD 304

Query: 1136 RIIALDGDTKNSTFSELFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFF 1315
            RIIALDGDTKNSTFSE+F+KEHPDRFIECYIAEQNMVS+AVGCATRNRTVPFCS F AFF
Sbjct: 305  RIIALDGDTKNSTFSEIFRKEHPDRFIECYIAEQNMVSVAVGCATRNRTVPFCSAFGAFF 364

Query: 1316 TRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVA 1495
            TRAFDQIRMAAISESNIN CGSHCGVSIGEDGPSQMALEDLAMFRS+P +T+FYPSDGV+
Sbjct: 365  TRAFDQIRMAAISESNINFCGSHCGVSIGEDGPSQMALEDLAMFRSIPTATIFYPSDGVS 424

Query: 1496 TEKAVELAANTKGICFIRTSRPENAIIYNNNEDFQIGQAKVVLKSKDDQVTVIGAGVT-- 1669
            TEKAVELAANTKGICFIRTSRPENAIIYNNNEDFQI QAKVVLKSKDDQVTVIGAGVT  
Sbjct: 425  TEKAVELAANTKGICFIRTSRPENAIIYNNNEDFQIKQAKVVLKSKDDQVTVIGAGVTLH 484

Query: 1670 -----------------------XXXXXXXXXXXXXXXINIRVLDPFTVKPLDRKLILDS 1780
                                                  INIRVLDPFT+KPLDR LIL+S
Sbjct: 485  EALAAAELLKKGIWEDEAKPTPCIPLGHAPGFSPLTEKINIRVLDPFTIKPLDRNLILES 544

Query: 1781 ARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELLKMFGID 1960
            ARATKGRI+TVEDHYY               P +TV+RLAV +VPRSGKPAELLKMFGID
Sbjct: 545  ARATKGRIVTVEDHYYEGGIGEAVSSALVGEPGITVSRLAVGEVPRSGKPAELLKMFGID 604

Query: 1961 KDAIARAVRGLVTKA 2005
            +DAIA+AVR LV KA
Sbjct: 605  RDAIAQAVRDLVAKA 619


>ref|XP_538204.2| PREDICTED: similar to transketolase-like 1 [Canis familiaris].
          Length = 596

 Score =  739 bits (1908), Expect = 0.0
 Identities = 374/615 (60%), Positives = 446/615 (72%), Gaps = 3/615 (0%)
 Frame = +2

Query: 152  KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 331
            KPD + LQ L+D ANRLRI SI+AT  + SGHPTSC SAAEIM+VLFFH MRYK +DP N
Sbjct: 15   KPDSKTLQVLRDMANRLRIHSIRATCVSSSGHPTSCSSAAEIMSVLFFHIMRYKQEDPEN 74

Query: 332  PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 511
            P NDRF+ SK                                      + +F DVATG L
Sbjct: 75   PDNDRFIASK--------------------------------------RLSFVDVATGWL 96

Query: 512  GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 691
            GQGLGAACGMAYTGKYFDKASYRV+CL+GDGE SEG+VWEA+AFA  Y LDNLVAI D+N
Sbjct: 97   GQGLGAACGMAYTGKYFDKASYRVFCLMGDGESSEGSVWEALAFASHYNLDNLVAIFDVN 156

Query: 692  RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQ---VKNQPTAIIAKT 862
            R+G S   PL+H +D+YQKRCEAFGW+  +VDG  VE LC+ F Q   VKN+PTA++AKT
Sbjct: 157  RVGHSGGLPLEHCIDIYQKRCEAFGWNTYVVDGRDVEALCQVFWQASEVKNKPTAVVAKT 216

Query: 863  FKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIR 1042
            FKGRGI  VED E+WHGKP+P+  AD +I+ I SQI+  K +   PP ED+P V+I +I 
Sbjct: 217  FKGRGIPSVEDAENWHGKPMPKERADAIIKLIESQIETNKNLEPKPPIEDSPPVNILDIE 276

Query: 1043 MPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIEC 1222
            M +PP+Y VG++IATRKA G ALAKLGHA+DR+I LDGDTKNSTFS++FK+EHP+RFIEC
Sbjct: 277  MASPPAYTVGEQIATRKACGLALAKLGHANDRVIVLDGDTKNSTFSDIFKREHPERFIEC 336

Query: 1223 YIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIG 1402
            YIAEQNMVS+A+GCATR RTV F STFAAF TRAFDQIRM AISE+NINL GSHCGVS+G
Sbjct: 337  YIAEQNMVSVALGCATRGRTVAFVSTFAAFLTRAFDQIRMGAISETNINLIGSHCGVSVG 396

Query: 1403 EDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYN 1582
            EDGPSQMALEDLAMFRSV   T+FYPSD  +TE A+ LAANTKG+C+IR SRPE A+IY 
Sbjct: 397  EDGPSQMALEDLAMFRSVRNCTIFYPSDATSTEHAILLAANTKGMCYIRASRPETAVIYT 456

Query: 1583 NNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDR 1762
              E F +GQAKV+ +  +D+VTV+GAGVT               I+IRV+D FT+KPLD 
Sbjct: 457  PQESFAVGQAKVIRRDVNDKVTVVGAGVTLHEALAAAEDLSKEDISIRVIDLFTIKPLDV 516

Query: 1763 KLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELL 1942
              I+ +A+AT GRI+TVEDHY                PD+ V +LAV+ VPRSGKP ELL
Sbjct: 517  TTIISNAKATGGRIITVEDHYPEGGIGEAVCAAVSMEPDILVHQLAVAGVPRSGKPGELL 576

Query: 1943 KMFGIDKDAIARAVR 1987
             MFG+    I  AV+
Sbjct: 577  DMFGVSARHIIVAVK 591


>ref|XP_861013.1| PREDICTED: hypothetical protein XP_855920 [Canis familiaris].
          Length = 335

 Score = 50.1 bits (118), Expect = 9e-06
 Identities = 49/141 (34%), Positives = 67/141 (47%), Gaps = 10/141 (7%)
 Frame = +3

Query: 1008 KTPPQWTSPTSECPRH--PATKLGTR*LPARPT-GRPWPSWATP----VTASLPWTGTP- 1163
            ++ P  ++PT   P    PA     R  PAR T GR  PS +TP     + S P   TP 
Sbjct: 110  RSTPSRSTPTRSTPSRSTPARSTPARSTPARSTPGRSTPSRSTPGRSTPSRSTPSRSTPG 169

Query: 1164 RIPPSQSSSKRSTQTASLSATS-PSRTW*ASPWAAPHATGQCPSAARSRPSSHGPSTRSA 1340
            R  PS+S+  RST   S  A S PSR+  A       +T    + ARS PS   PS  + 
Sbjct: 170  RSTPSRSTPSRSTPARSTPARSTPSRSTPARS-TPSRSTPSRSTPARSTPSRSTPSRSTP 228

Query: 1341 WRPSP-RATSTSAAPTVACPS 1400
             R +P R+T   + P+ + P+
Sbjct: 229  SRSTPSRSTPARSTPSRSTPA 249


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 88,035,497
Number of extensions: 2526262
Number of successful extensions: 13110
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12888
Number of HSP's successfully gapped: 5
Length of query: 707
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 597
Effective length of database: 15,207,544
Effective search space: 9078903768
Effective search space used: 9078903768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012445
         (2122 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001106151.1| transketolase [Sus scrofa].                      1176   0.0  
Alignment   gi|XP_003362245.1| PREDICTED: LOW QUALITY PROTEIN: transketolas...   701   0.0  

>ref|NP_001106151.1| transketolase [Sus scrofa].
          Length = 623

 Score = 1176 bits (3043), Expect = 0.0
 Identities = 593/623 (95%), Positives = 593/623 (95%)
 Frame = +2

Query: 137  MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 316
            MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA
Sbjct: 1    MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 60

Query: 317  QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 496
            QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV
Sbjct: 61   QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 120

Query: 497  ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 676
            ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA
Sbjct: 121  ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 180

Query: 677  ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQVKNQPTAIIA 856
            ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQVKNQPTAIIA
Sbjct: 181  ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQVKNQPTAIIA 240

Query: 857  KTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 1036
            KTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN
Sbjct: 241  KTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 300

Query: 1037 IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 1216
            IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI
Sbjct: 301  IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 360

Query: 1217 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 1396
            ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS
Sbjct: 361  ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 420

Query: 1397 IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 1576
            IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII
Sbjct: 421  IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 480

Query: 1577 YNNNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPL 1756
            YNNNEDFQIGQAKVVLKSKDDQVTVIGAGVT               INIRVLDPFTVKPL
Sbjct: 481  YNNNEDFQIGQAKVVLKSKDDQVTVIGAGVTLHEALAAADLLKKEKINIRVLDPFTVKPL 540

Query: 1757 DRKLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAE 1936
            DRKLILDSARATKGRILTVEDHYY               PDVTVTRLAVSQVPRSGKPAE
Sbjct: 541  DRKLILDSARATKGRILTVEDHYYEGGLGEAVAAAVVGEPDVTVTRLAVSQVPRSGKPAE 600

Query: 1937 LLKMFGIDKDAIARAVRGLVTKA 2005
            LLKMFGIDKDAIARAVRGLVTKA
Sbjct: 601  LLKMFGIDKDAIARAVRGLVTKA 623


>ref|XP_003362245.1| PREDICTED: LOW QUALITY PROTEIN: transketolase-like protein 1-like
            [Sus scrofa].
          Length = 557

 Score =  701 bits (1808), Expect = 0.0
 Identities = 350/587 (59%), Positives = 425/587 (72%), Gaps = 3/587 (0%)
 Frame = +2

Query: 224  TTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRNPHNDRFVLSKGHAAPILYSVWAEA 403
            T A    HPTSC SAAEIM+VL FH M+YK  DP NP NDR VLSK              
Sbjct: 2    TCAVSFSHPTSCSSAAEIMSVLCFHVMKYKQTDPENPDNDRLVLSK-------------- 47

Query: 404  GFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRV 583
                                    + +F DVA G LGQGLGAACGMAYTGKYFDKASYRV
Sbjct: 48   ------------------------RLSFVDVAIGWLGQGLGAACGMAYTGKYFDKASYRV 83

Query: 584  YCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDINRLGQSDPAPLQHQMDVYQKRCEAF 763
            +CL+GDGE SEG+VWEA+AFA  Y LDNLVA+ D+NRL  S   PL+H +DVYQKRCEAF
Sbjct: 84   FCLMGDGESSEGSVWEALAFASHYSLDNLVAVFDVNRLSHSGTLPLEHCIDVYQKRCEAF 143

Query: 764  GWHAIIVDGHSVEELCKAF---GQVKNQPTAIIAKTFKGRGITGVEDKESWHGKPLPQNM 934
            GW   +VDG  VE LC+ F    Q+K++PTA++AKTFKGRG+  VED E+WHGKP+P+  
Sbjct: 144  GWKTFVVDGRDVEALCQVFWQASQMKSKPTAVVAKTFKGRGVPSVEDAENWHGKPMPKER 203

Query: 935  ADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIRMPTPPSYKVGDKIATRKAYGQALA 1114
            AD +I+ I SQIQ  + +   PP ED+P ++IT+I M +PP+YK+GD +ATRKA G ALA
Sbjct: 204  ADAIIKLIESQIQTNRNLEPKPPVEDSPQINITDIEMTSPPAYKIGDVVATRKACGLALA 263

Query: 1115 KLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFC 1294
            KLGHA+DR+I LDGDTKNSTFSE+FKKE+P+RFIEC+IAEQNMV++A+GCATR+RTV F 
Sbjct: 264  KLGHANDRVIVLDGDTKNSTFSEIFKKEYPERFIECFIAEQNMVNVALGCATRDRTVAFV 323

Query: 1295 STFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPMSTVF 1474
             TFAAF TRAFDQIR+ AI+++NINL GSHCGVS+GEDGPSQMALEDLAMFR++P  TVF
Sbjct: 324  CTFAAFLTRAFDQIRVGAIAQTNINLVGSHCGVSVGEDGPSQMALEDLAMFRAIPNCTVF 383

Query: 1475 YPSDGVATEKAVELAANTKGICFIRTSRPENAIIYNNNEDFQIGQAKVVLKSKDDQVTVI 1654
            YPSD V+TE AV LAANTKGIC+IRTSRPE+A++Y   E FQIGQAKV+ +S +D++TV+
Sbjct: 384  YPSDAVSTEHAVFLAANTKGICYIRTSRPESAVVYTPQESFQIGQAKVIRQSVNDKITVV 443

Query: 1655 GAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDRKLILDSARATKGRILTVEDHYYXX 1834
            GAGVT               I++RV+D FTVKPLD   I+ +A+AT GRI+TVEDHY   
Sbjct: 444  GAGVTLHEALAAADELSKQDISVRVIDLFTVKPLDAATIISNAKATGGRIITVEDHYPEG 503

Query: 1835 XXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELLKMFGIDKDAIA 1975
                         PD+ V +LAV  VPRSGKP+ELL +FGI    +A
Sbjct: 504  GIGEAICAAVSMEPDILVHQLAVPGVPRSGKPSELLDVFGISAXIVA 550


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 54,887,933
Number of extensions: 1622330
Number of successful extensions: 8248
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8168
Number of HSP's successfully gapped: 3
Length of query: 707
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 601
Effective length of database: 8,704,850
Effective search space: 5231614850
Effective search space used: 5231614850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012445
         (2122 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033414.1| transketolase [Mus musculus].                       1132   0.0  
Alignment   gi|NP_083203.2| transketolase-like protein 2 [Mus musculus].         819   0.0  
Alignment   gi|NP_113556.2| transketolase-like protein 1 [Mus musculus].         640   0.0  

>ref|NP_033414.1| transketolase [Mus musculus].
          Length = 623

 Score = 1132 bits (2929), Expect = 0.0
 Identities = 562/622 (90%), Positives = 583/622 (93%)
 Frame = +2

Query: 137  MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 316
            ME YHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA
Sbjct: 1    MEGYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 60

Query: 317  QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 496
             DPRNPHNDRFVLSKGHAAPILY+VWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV
Sbjct: 61   LDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 120

Query: 497  ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 676
            ATGSLGQGLGAACGMAYTGKYFDKASYRVYC+LGDGE+SEG+VWEAMAFAGIYKLDNLVA
Sbjct: 121  ATGSLGQGLGAACGMAYTGKYFDKASYRVYCMLGDGEVSEGSVWEAMAFAGIYKLDNLVA 180

Query: 677  ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQVKNQPTAIIA 856
            I DINRLGQSDPAPLQHQ+D+YQKRCEAFGWH IIVDGHSVEELCKAFGQ K+QPTAIIA
Sbjct: 181  IFDINRLGQSDPAPLQHQVDIYQKRCEAFGWHTIIVDGHSVEELCKAFGQAKHQPTAIIA 240

Query: 857  KTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 1036
            KTFKGRGITG+EDKE+WHGKPLP+NMA+Q+IQEIYSQ+Q+KKKILATPPQEDAPSVDI N
Sbjct: 241  KTFKGRGITGIEDKEAWHGKPLPKNMAEQIIQEIYSQVQSKKKILATPPQEDAPSVDIAN 300

Query: 1037 IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 1216
            IRMPTPPSYKVGDKIATRKAYG ALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI
Sbjct: 301  IRMPTPPSYKVGDKIATRKAYGLALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 360

Query: 1217 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 1396
            ECYIAEQNMVSIAVGCATR+RTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS
Sbjct: 361  ECYIAEQNMVSIAVGCATRDRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 420

Query: 1397 IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 1576
            IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII
Sbjct: 421  IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 480

Query: 1577 YNNNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPL 1756
            Y+NNEDFQ+GQAKVVLKSKDDQVTVIGAGVT               I+IRVLDPFT+KPL
Sbjct: 481  YSNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAESLKKDKISIRVLDPFTIKPL 540

Query: 1757 DRKLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAE 1936
            DRKLILDSARATKGRILTVEDHYY               P VTVTRLAVSQVPRSGKPAE
Sbjct: 541  DRKLILDSARATKGRILTVEDHYYEGGIGEAVSAAVVGEPGVTVTRLAVSQVPRSGKPAE 600

Query: 1937 LLKMFGIDKDAIARAVRGLVTK 2002
            LLKMFGIDKDAI +AV+GLVTK
Sbjct: 601  LLKMFGIDKDAIVQAVKGLVTK 622


>ref|NP_083203.2| transketolase-like protein 2 [Mus musculus].
          Length = 627

 Score =  819 bits (2116), Expect = 0.0
 Identities = 405/620 (65%), Positives = 482/620 (77%), Gaps = 3/620 (0%)
 Frame = +2

Query: 152  KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 331
            K +    Q L+D ANRLRI SI+AT A  SGHPTSCCS AEIMAVLFFHTMRYK  DP +
Sbjct: 8    KLESDTFQVLQDVANRLRIHSIRATCACSSGHPTSCCSVAEIMAVLFFHTMRYKQADPEH 67

Query: 332  PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 511
            P NDRFVLSKGHAAPILY+VW E G + E++LLNLRKI  DL+GHP P+ +F DVATGSL
Sbjct: 68   PDNDRFVLSKGHAAPILYAVWVEVGRICESDLLNLRKIHCDLEGHPTPRLSFVDVATGSL 127

Query: 512  GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 691
            GQGLGAACGMAYTGKYFDKASYRV+CL+GDGE SEG+VWEA+AFA  Y LDNLVAI D+N
Sbjct: 128  GQGLGAACGMAYTGKYFDKASYRVFCLMGDGESSEGSVWEALAFASHYNLDNLVAIFDVN 187

Query: 692  RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAF---GQVKNQPTAIIAKT 862
            RLGQS  APL+H   VY+KRC+AFGW+  +VDGH VE LC+AF    QVKN+PTA+IAKT
Sbjct: 188  RLGQSGTAPLEHCTAVYEKRCQAFGWNTYVVDGHDVEALCQAFWKAAQVKNKPTALIAKT 247

Query: 863  FKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIR 1042
            FKGRGI  VED E+WHGKP+P++ AD +++ I ++IQ  + +   PP ED+P + ++N +
Sbjct: 248  FKGRGIPNVEDAENWHGKPMPKDRADGIVKLIENRIQTNRNLTPKPPIEDSPRISMSNTK 307

Query: 1043 MPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIEC 1222
            M + P YK+GD IATR+AYG ALAKLG ++ R+I LDGDTKNSTFSE+FKKEHP+RFIEC
Sbjct: 308  MTSLPVYKLGDMIATREAYGLALAKLGQSNQRVIVLDGDTKNSTFSEVFKKEHPERFIEC 367

Query: 1223 YIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIG 1402
            +IAEQNMVS+A+GCATR RT+ F STFAAF TRAFDQIRM AIS++NIN  GSHCGVS+G
Sbjct: 368  FIAEQNMVSVALGCATRGRTIAFVSTFAAFLTRAFDQIRMGAISQTNINFVGSHCGVSVG 427

Query: 1403 EDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYN 1582
            EDGPSQMALEDLAMFRS+P  TVFYPSD V+TE AV LAANTKG+CFIRT+RP+ A+IY 
Sbjct: 428  EDGPSQMALEDLAMFRSIPNCTVFYPSDAVSTEHAVYLAANTKGMCFIRTTRPKTAVIYT 487

Query: 1583 NNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDR 1762
              E+F IGQAKV+ +S  D+VTVIGAGVT               I IRV+D FT+KPLD 
Sbjct: 488  AEENFVIGQAKVIRQSAVDKVTVIGAGVTLHEALVAAEELSQQGIFIRVIDLFTIKPLDA 547

Query: 1763 KLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELL 1942
              I+ SA+AT G+I+TVEDHY                PD+ V +LAV++VPRSGKP+ELL
Sbjct: 548  VTIIQSAKATGGQIITVEDHYREGGIGEAVCAAISREPDIVVRQLAVTEVPRSGKPSELL 607

Query: 1943 KMFGIDKDAIARAVRGLVTK 2002
             MFGI    I  AV+  V K
Sbjct: 608  DMFGISARHIIAAVKDTVMK 627


>ref|NP_113556.2| transketolase-like protein 1 [Mus musculus].
          Length = 595

 Score =  640 bits (1652), Expect = 0.0
 Identities = 334/614 (54%), Positives = 418/614 (68%), Gaps = 3/614 (0%)
 Frame = +2

Query: 155  PDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRNP 334
            PD++ LQ L+D ANRLRI SI+AT ++ + +   C S AEIM+VLFF+TMRYK +DP NP
Sbjct: 16   PDEKTLQVLRDMANRLRIRSIKATNSSTTSYLIPC-SNAEIMSVLFFYTMRYKQEDPENP 74

Query: 335  HNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLG 514
             NDR +LSKG               LP                       F +VATG  G
Sbjct: 75   DNDRCILSKG---------------LP-----------------------FVNVATGWPG 96

Query: 515  QGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDINR 694
            QGLGAACGMAYTGKYFD+ASYRV+CLLGD E +EG+VWEA AFA  Y LDNL+AI D+NR
Sbjct: 97   QGLGAACGMAYTGKYFDQASYRVFCLLGDEESTEGSVWEAFAFASYYNLDNLMAIFDVNR 156

Query: 695  LGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQ---VKNQPTAIIAKTF 865
            +G S    ++H + +YQKRCEAFGW+  +VDG  V+ LC  F Q   V+ +PTA++AKTF
Sbjct: 157  IGHSSSMSVEHCIAIYQKRCEAFGWNTYVVDGRDVKTLCHVFSQAAQVRGKPTAVVAKTF 216

Query: 866  KGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIRM 1045
            K RG+  VED ESW+G+P+P+  AD +++ I SQIQ  K ++ +PP ED+P ++I NI M
Sbjct: 217  KARGMPNVEDAESWYGRPMPKERADAIVKLIESQIQTNKILVPSPPIEDSPQINIMNICM 276

Query: 1046 PTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIECY 1225
             +PP Y   DK++T++A G ALAKLGH +DR+I L  DTKN  FS++FKKEHP+RFI+C 
Sbjct: 277  TSPPVYVADDKVSTQRACGLALAKLGHENDRVIVLGSDTKNCNFSDIFKKEHPERFIQCC 336

Query: 1226 IAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGE 1405
            IAEQNMV++A+GC+TR+RT+ F  +FAAFFTRAFDQIR+ AIS+ NINL G HCGVS G+
Sbjct: 337  IAEQNMVNVALGCSTRDRTIVFAYSFAAFFTRAFDQIRLGAISQININLIGCHCGVSTGD 396

Query: 1406 DGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYNN 1585
            D P  MALEDLAMFR++P   VFYPSD V+TE AV LAANTK +CFIRTS+ E AIIY  
Sbjct: 397  DNPYHMALEDLAMFRAIPNCVVFYPSDAVSTEHAVYLAANTKEMCFIRTSQAETAIIYTT 456

Query: 1586 NEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDRK 1765
             E FQIGQAKVV  S +D+V VIGAGVT               I+IRV+D FT+KPLD  
Sbjct: 457  QETFQIGQAKVVRHSDNDKVIVIGAGVTLHEALVAAAELSKEDISIRVIDLFTIKPLDIA 516

Query: 1766 LILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELLK 1945
             I+ +A+AT GRI+TVEDHY                P++ V  LAV  VPRSG+  E L 
Sbjct: 517  TIISNAKATGGRIITVEDHYPEGGIGGAVCAAVSMEPNIVVHNLAVMDVPRSGRCNEALD 576

Query: 1946 MFGIDKDAIARAVR 1987
              GI    I  AV+
Sbjct: 577  FSGISSRHIIVAVK 590


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 72,721,422
Number of extensions: 2037555
Number of successful extensions: 10539
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10376
Number of HSP's successfully gapped: 4
Length of query: 707
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 599
Effective length of database: 12,373,671
Effective search space: 7411828929
Effective search space used: 7411828929
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012445
         (2122 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001128527.1| transketolase [Homo sapiens].                    1135   0.0  
Alignment   gi|NP_001055.1| transketolase [Homo sapiens].                       1135   0.0  
Alignment   gi|NP_115512.3| transketolase-like protein 2 [Homo sapiens].         810   0.0  
Alignment   gi|NP_036385.3| transketolase-like protein 1 isoform a [Homo sa...   696   0.0  
Alignment   gi|NP_001139405.1| transketolase-like protein 1 isoform b [Homo...   677   0.0  
Alignment   gi|NP_001139406.1| transketolase-like protein 1 isoform c [Homo...   646   0.0  

>ref|NP_001128527.1| transketolase [Homo sapiens].
          Length = 623

 Score = 1135 bits (2936), Expect = 0.0
 Identities = 565/623 (90%), Positives = 585/623 (93%)
 Frame = +2

Query: 137  MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 316
            ME+YHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYK+
Sbjct: 1    MESYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKS 60

Query: 317  QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 496
            QDPRNPHNDRFVLSKGHAAPILY+VWAEAGFL EAELLNLRKISSDLDGHPVPKQAFTDV
Sbjct: 61   QDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDV 120

Query: 497  ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 676
            ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEG+VWEAMAFA IYKLDNLVA
Sbjct: 121  ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVA 180

Query: 677  ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQVKNQPTAIIA 856
            ILDINRLGQSDPAPLQHQMD+YQKRCEAFGWHAIIVDGHSVEELCKAFGQ K+QPTAIIA
Sbjct: 181  ILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKHQPTAIIA 240

Query: 857  KTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 1036
            KTFKGRGITGVEDKESWHGKPLP+NMA+Q+IQEIYSQIQ+KKKILATPPQEDAPSVDI N
Sbjct: 241  KTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIAN 300

Query: 1037 IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 1216
            IRMP+ PSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSE+FKKEHPDRFI
Sbjct: 301  IRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFI 360

Query: 1217 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 1396
            ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS
Sbjct: 361  ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 420

Query: 1397 IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 1576
            IGEDGPSQMALEDLAMFRSVP STVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII
Sbjct: 421  IGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 480

Query: 1577 YNNNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPL 1756
            YNNNEDFQ+GQAKVVLKSKDDQVTVIGAGVT               INIRVLDPFT+KPL
Sbjct: 481  YNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPL 540

Query: 1757 DRKLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAE 1936
            DRKLILDSARATKGRILTVEDHYY               P +TVT LAV++VPRSGKPAE
Sbjct: 541  DRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNRVPRSGKPAE 600

Query: 1937 LLKMFGIDKDAIARAVRGLVTKA 2005
            LLKMFGID+DAIA+AVRGL+TKA
Sbjct: 601  LLKMFGIDRDAIAQAVRGLITKA 623


>ref|NP_001055.1| transketolase [Homo sapiens].
          Length = 623

 Score = 1135 bits (2936), Expect = 0.0
 Identities = 565/623 (90%), Positives = 585/623 (93%)
 Frame = +2

Query: 137  MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 316
            ME+YHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYK+
Sbjct: 1    MESYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKS 60

Query: 317  QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 496
            QDPRNPHNDRFVLSKGHAAPILY+VWAEAGFL EAELLNLRKISSDLDGHPVPKQAFTDV
Sbjct: 61   QDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDV 120

Query: 497  ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 676
            ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEG+VWEAMAFA IYKLDNLVA
Sbjct: 121  ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVA 180

Query: 677  ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQVKNQPTAIIA 856
            ILDINRLGQSDPAPLQHQMD+YQKRCEAFGWHAIIVDGHSVEELCKAFGQ K+QPTAIIA
Sbjct: 181  ILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKHQPTAIIA 240

Query: 857  KTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 1036
            KTFKGRGITGVEDKESWHGKPLP+NMA+Q+IQEIYSQIQ+KKKILATPPQEDAPSVDI N
Sbjct: 241  KTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIAN 300

Query: 1037 IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 1216
            IRMP+ PSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSE+FKKEHPDRFI
Sbjct: 301  IRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFI 360

Query: 1217 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 1396
            ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS
Sbjct: 361  ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 420

Query: 1397 IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 1576
            IGEDGPSQMALEDLAMFRSVP STVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII
Sbjct: 421  IGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 480

Query: 1577 YNNNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPL 1756
            YNNNEDFQ+GQAKVVLKSKDDQVTVIGAGVT               INIRVLDPFT+KPL
Sbjct: 481  YNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPL 540

Query: 1757 DRKLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAE 1936
            DRKLILDSARATKGRILTVEDHYY               P +TVT LAV++VPRSGKPAE
Sbjct: 541  DRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNRVPRSGKPAE 600

Query: 1937 LLKMFGIDKDAIARAVRGLVTKA 2005
            LLKMFGID+DAIA+AVRGL+TKA
Sbjct: 601  LLKMFGIDRDAIAQAVRGLITKA 623


>ref|NP_115512.3| transketolase-like protein 2 [Homo sapiens].
          Length = 626

 Score =  810 bits (2093), Expect = 0.0
 Identities = 393/614 (64%), Positives = 476/614 (77%), Gaps = 3/614 (0%)
 Frame = +2

Query: 152  KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 331
            KPD + +Q L+DTANRLRI SI+AT A+GSG  TSCCSAAE+++VLFFHTM+YK  DP +
Sbjct: 7    KPDVKTVQVLRDTANRLRIHSIRATCASGSGQLTSCCSAAEVVSVLFFHTMKYKQTDPEH 66

Query: 332  PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 511
            P NDRF+LS+GHAAPILY+ W E G + E++LLNLRK+ SDL+ HP P+  F DVATGSL
Sbjct: 67   PDNDRFILSRGHAAPILYAAWVEVGDISESDLLNLRKLHSDLERHPTPRLPFVDVATGSL 126

Query: 512  GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 691
            GQGLG ACGMAYTGKY DKASYRV+CL+GDGE SEG+VWEA AFA  Y LDNLVA+ D+N
Sbjct: 127  GQGLGTACGMAYTGKYLDKASYRVFCLMGDGESSEGSVWEAFAFASHYNLDNLVAVFDVN 186

Query: 692  RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAF---GQVKNQPTAIIAKT 862
            RLGQS PAPL+H  D+YQ  CEAFGW+  +VDGH VE LC+AF    QVKN+PTAI+AKT
Sbjct: 187  RLGQSGPAPLEHGADIYQNCCEAFGWNTYLVDGHDVEALCQAFWQASQVKNKPTAIVAKT 246

Query: 863  FKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIR 1042
            FKGRGI  +ED E+WHGKP+P+  AD +++ I SQIQ  + ++   P ED+P + IT+I+
Sbjct: 247  FKGRGIPNIEDAENWHGKPVPKERADAIVKLIESQIQTNENLIPKSPVEDSPQISITDIK 306

Query: 1043 MPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIEC 1222
            M +PP+YKVGDKIAT+K YG ALAKLG A++R+I L GDT NSTFSE+F+KEHP+RFIEC
Sbjct: 307  MTSPPAYKVGDKIATQKTYGLALAKLGRANERVIVLSGDTMNSTFSEIFRKEHPERFIEC 366

Query: 1223 YIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIG 1402
             IAEQNMVS+A+GCATR RT+ F   FAAFFTRAFDQ+RM AIS++NINL GSHCGVS G
Sbjct: 367  IIAEQNMVSVALGCATRGRTIAFAGAFAAFFTRAFDQLRMGAISQANINLIGSHCGVSTG 426

Query: 1403 EDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYN 1582
            EDG SQMALEDLAMFRS+P  TVFYPSD ++TE A+ LAANTKG+CFIRTS+PE A+IY 
Sbjct: 427  EDGVSQMALEDLAMFRSIPNCTVFYPSDAISTEHAIYLAANTKGMCFIRTSQPETAVIYT 486

Query: 1583 NNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDR 1762
              E+F+IGQAKVV    +D+VTVIGAGVT               I++RV+DPFT+KPLD 
Sbjct: 487  PQENFEIGQAKVVRHGVNDKVTVIGAGVTLHEALEAADHLSQQGISVRVIDPFTIKPLDA 546

Query: 1763 KLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELL 1942
              I+ SA+AT GR++TVEDHY                PD+ V +LAVS VP+ GK +ELL
Sbjct: 547  ATIISSAKATGGRVITVEDHYREGGIGEAVCAAVSREPDILVHQLAVSGVPQRGKTSELL 606

Query: 1943 KMFGIDKDAIARAV 1984
             MFGI    I  AV
Sbjct: 607  DMFGISTRHIIAAV 620


>ref|NP_036385.3| transketolase-like protein 1 isoform a [Homo sapiens].
          Length = 596

 Score =  696 bits (1795), Expect = 0.0
 Identities = 349/615 (56%), Positives = 436/615 (70%), Gaps = 3/615 (0%)
 Frame = +2

Query: 152  KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 331
            +PD+  LQ L+D A+RLRI SI+AT +  SGHPTSC S++EIM+VLFF+ MRYK  DP N
Sbjct: 15   RPDRGTLQVLQDMASRLRIHSIRATCSTSSGHPTSCSSSSEIMSVLFFYIMRYKQSDPEN 74

Query: 332  PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 511
            P NDRFVL+K                                      + +F DVATG L
Sbjct: 75   PDNDRFVLAK--------------------------------------RLSFVDVATGWL 96

Query: 512  GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 691
            GQGLG ACGMAYTGKYFD+ASYRV+CL+ DGE SEG+VWEAMAFA  Y LDNLVAI D+N
Sbjct: 97   GQGLGVACGMAYTGKYFDRASYRVFCLMSDGESSEGSVWEAMAFASYYSLDNLVAIFDVN 156

Query: 692  RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAF---GQVKNQPTAIIAKT 862
            RLG S   P +H +++YQ+RCEAFGW+  +VDG  VE LC+ F    QVK++PTA++AKT
Sbjct: 157  RLGHSGALPAEHCINIYQRRCEAFGWNTYVVDGRDVEALCQVFWQASQVKHKPTAVVAKT 216

Query: 863  FKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIR 1042
            FKGRG   +ED ESWH KP+P+  AD +I+ I SQIQ  + +   PP ED+P V+IT++R
Sbjct: 217  FKGRGTPSIEDAESWHAKPMPRERADAIIKLIESQIQTSRNLDPQPPIEDSPEVNITDVR 276

Query: 1043 MPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIEC 1222
            M +PP Y+VGDKIATRKA G ALAKLG+A++R++ LDGDT+ STFSE+F KE+P+RFIEC
Sbjct: 277  MTSPPDYRVGDKIATRKACGLALAKLGYANNRVVVLDGDTRYSTFSEIFNKEYPERFIEC 336

Query: 1223 YIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIG 1402
            ++AEQNMVS+A+GCA+R RT+ F STFAAF TRAFD IR+  ++ESNIN+ GSHCGVS+G
Sbjct: 337  FMAEQNMVSVALGCASRGRTIAFASTFAAFLTRAFDHIRIGGLAESNINIIGSHCGVSVG 396

Query: 1403 EDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYN 1582
            +DG SQMALED+AMFR++P  T+FYP+D V+TE AV LAAN KG+CFIRT+RPE  +IY 
Sbjct: 397  DDGASQMALEDIAMFRTIPKCTIFYPTDAVSTEHAVALAANAKGMCFIRTTRPETMVIYT 456

Query: 1583 NNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDR 1762
              E F+IGQAKV+     D+VTVIGAG+T               I IRV+D FT+KPLD 
Sbjct: 457  PQERFEIGQAKVLRHCVSDKVTVIGAGITVYEALAAADELSKQDIFIRVIDLFTIKPLDV 516

Query: 1763 KLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELL 1942
              I+ SA+AT+GRI+TVEDHY                PD+ V  LAVS VP+SGK  ELL
Sbjct: 517  ATIVSSAKATEGRIITVEDHYPQGGIGEAVCAAVSMDPDIQVHSLAVSGVPQSGKSEELL 576

Query: 1943 KMFGIDKDAIARAVR 1987
             M+GI    I  AV+
Sbjct: 577  DMYGISARHIIVAVK 591


>ref|NP_001139405.1| transketolase-like protein 1 isoform b [Homo sapiens].
          Length = 590

 Score =  677 bits (1746), Expect = 0.0
 Identities = 344/615 (55%), Positives = 431/615 (70%), Gaps = 3/615 (0%)
 Frame = +2

Query: 152  KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 331
            +PD+  LQ L+D A+RLRI SI+AT +  SG      S++EIM+VLFF+ MRYK  DP N
Sbjct: 15   RPDRGTLQVLQDMASRLRIHSIRATCSTSSG------SSSEIMSVLFFYIMRYKQSDPEN 68

Query: 332  PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 511
            P NDRFVL+K                                      + +F DVATG L
Sbjct: 69   PDNDRFVLAK--------------------------------------RLSFVDVATGWL 90

Query: 512  GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 691
            GQGLG ACGMAYTGKYFD+ASYRV+CL+ DGE SEG+VWEAMAFA  Y LDNLVAI D+N
Sbjct: 91   GQGLGVACGMAYTGKYFDRASYRVFCLMSDGESSEGSVWEAMAFASYYSLDNLVAIFDVN 150

Query: 692  RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAF---GQVKNQPTAIIAKT 862
            RLG S   P +H +++YQ+RCEAFGW+  +VDG  VE LC+ F    QVK++PTA++AKT
Sbjct: 151  RLGHSGALPAEHCINIYQRRCEAFGWNTYVVDGRDVEALCQVFWQASQVKHKPTAVVAKT 210

Query: 863  FKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIR 1042
            FKGRG   +ED ESWH KP+P+  AD +I+ I SQIQ  + +   PP ED+P V+IT++R
Sbjct: 211  FKGRGTPSIEDAESWHAKPMPRERADAIIKLIESQIQTSRNLDPQPPIEDSPEVNITDVR 270

Query: 1043 MPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIEC 1222
            M +PP Y+VGDKIATRKA G ALAKLG+A++R++ LDGDT+ STFSE+F KE+P+RFIEC
Sbjct: 271  MTSPPDYRVGDKIATRKACGLALAKLGYANNRVVVLDGDTRYSTFSEIFNKEYPERFIEC 330

Query: 1223 YIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIG 1402
            ++AEQNMVS+A+GCA+R RT+ F STFAAF TRAFD IR+  ++ESNIN+ GSHCGVS+G
Sbjct: 331  FMAEQNMVSVALGCASRGRTIAFASTFAAFLTRAFDHIRIGGLAESNINIIGSHCGVSVG 390

Query: 1403 EDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYN 1582
            +DG SQMALED+AMFR++P  T+FYP+D V+TE AV LAAN KG+CFIRT+RPE  +IY 
Sbjct: 391  DDGASQMALEDIAMFRTIPKCTIFYPTDAVSTEHAVALAANAKGMCFIRTTRPETMVIYT 450

Query: 1583 NNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDR 1762
              E F+IGQAKV+     D+VTVIGAG+T               I IRV+D FT+KPLD 
Sbjct: 451  PQERFEIGQAKVLRHCVSDKVTVIGAGITVYEALAAADELSKQDIFIRVIDLFTIKPLDV 510

Query: 1763 KLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELL 1942
              I+ SA+AT+GRI+TVEDHY                PD+ V  LAVS VP+SGK  ELL
Sbjct: 511  ATIVSSAKATEGRIITVEDHYPQGGIGEAVCAAVSMDPDIQVHSLAVSGVPQSGKSEELL 570

Query: 1943 KMFGIDKDAIARAVR 1987
             M+GI    I  AV+
Sbjct: 571  DMYGISARHIIVAVK 585


>ref|NP_001139406.1| transketolase-like protein 1 isoform c [Homo sapiens].
          Length = 540

 Score =  646 bits (1666), Expect = 0.0
 Identities = 324/573 (56%), Positives = 403/573 (70%), Gaps = 3/573 (0%)
 Frame = +2

Query: 278  MAVLFFHTMRYKAQDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDL 457
            M+VLFF+ MRYK  DP NP NDRFVL+K                                
Sbjct: 1    MSVLFFYIMRYKQSDPENPDNDRFVLAK-------------------------------- 28

Query: 458  DGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAM 637
                  + +F DVATG LGQGLG ACGMAYTGKYFD+ASYRV+CL+ DGE SEG+VWEAM
Sbjct: 29   ------RLSFVDVATGWLGQGLGVACGMAYTGKYFDRASYRVFCLMSDGESSEGSVWEAM 82

Query: 638  AFAGIYKLDNLVAILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKA 817
            AFA  Y LDNLVAI D+NRLG S   P +H +++YQ+RCEAFGW+  +VDG  VE LC+ 
Sbjct: 83   AFASYYSLDNLVAIFDVNRLGHSGALPAEHCINIYQRRCEAFGWNTYVVDGRDVEALCQV 142

Query: 818  F---GQVKNQPTAIIAKTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKI 988
            F    QVK++PTA++AKTFKGRG   +ED ESWH KP+P+  AD +I+ I SQIQ  + +
Sbjct: 143  FWQASQVKHKPTAVVAKTFKGRGTPSIEDAESWHAKPMPRERADAIIKLIESQIQTSRNL 202

Query: 989  LATPPQEDAPSVDITNIRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKN 1168
               PP ED+P V+IT++RM +PP Y+VGDKIATRKA G ALAKLG+A++R++ LDGDT+ 
Sbjct: 203  DPQPPIEDSPEVNITDVRMTSPPDYRVGDKIATRKACGLALAKLGYANNRVVVLDGDTRY 262

Query: 1169 STFSELFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAA 1348
            STFSE+F KE+P+RFIEC++AEQNMVS+A+GCA+R RT+ F STFAAF TRAFD IR+  
Sbjct: 263  STFSEIFNKEYPERFIECFMAEQNMVSVALGCASRGRTIAFASTFAAFLTRAFDHIRIGG 322

Query: 1349 ISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANT 1528
            ++ESNIN+ GSHCGVS+G+DG SQMALED+AMFR++P  T+FYP+D V+TE AV LAAN 
Sbjct: 323  LAESNINIIGSHCGVSVGDDGASQMALEDIAMFRTIPKCTIFYPTDAVSTEHAVALAANA 382

Query: 1529 KGICFIRTSRPENAIIYNNNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXX 1708
            KG+CFIRT+RPE  +IY   E F+IGQAKV+     D+VTVIGAG+T             
Sbjct: 383  KGMCFIRTTRPETMVIYTPQERFEIGQAKVLRHCVSDKVTVIGAGITVYEALAAADELSK 442

Query: 1709 XXINIRVLDPFTVKPLDRKLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTV 1888
              I IRV+D FT+KPLD   I+ SA+AT+GRI+TVEDHY                PD+ V
Sbjct: 443  QDIFIRVIDLFTIKPLDVATIVSSAKATEGRIITVEDHYPQGGIGEAVCAAVSMDPDIQV 502

Query: 1889 TRLAVSQVPRSGKPAELLKMFGIDKDAIARAVR 1987
              LAVS VP+SGK  ELL M+GI    I  AV+
Sbjct: 503  HSLAVSGVPQSGKSEELLDMYGISARHIIVAVK 535


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 86,314,533
Number of extensions: 2463304
Number of successful extensions: 12302
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 12129
Number of HSP's successfully gapped: 9
Length of query: 707
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 597
Effective length of database: 14,671,124
Effective search space: 8758661028
Effective search space used: 8758661028
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012445
         (2122 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr13                                                         519   e-144
gb|GL896526.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...    68   2e-08

>Sscrofa_Chr13 
||          Length = 218635234

 Score =  519 bits (262), Expect = e-144
 Identities = 265/266 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1831     aggtggcctaggtgaggcagtggctgctgcagtggtgggtgagcctgacgtcactgtcac 1890
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38418704 aggtggcctaggtgaggcagtggctgctgcagtggtgggtgagcctgacgtcactgtcac 38418645

                                                                            
Query: 1891     ccgcctggctgtcagccaagtgccaagaagcgggaagcccgcggagctgctgaagatgtt 1950
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38418644 ccgcctggctgtcagccaagtgccaagaagcgggaagcccgcggagctgctgaagatgtt 38418585

                                                                            
Query: 1951     cggcatcgacaaggacgccatcgcgcgagccgtgcggggcctggtcaccaaggcctaggg 2010
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38418584 cggcatcgacaaggacgccatcgcgcgagccgtgcggggcctggtcaccaaggcctaggg 38418525

                                                                            
Query: 2011     agggctcggggtgcagcgtgggagttctccacattcctgggtgtgtgcagagatatactg 2070
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38418524 agggctcggggtgcagcgtgggagttctccacattcctgggtgtgtgcagagatatactg 38418465

                                          
Query: 2071     aggggactgccaaatagatgttttga 2096
                |||||||||||||||| |||||||||
Sbjct: 38418464 aggggactgccaaataaatgttttga 38418439



 Score =  474 bits (239), Expect = e-130
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1        tctcaggagtcttaacgcgctcgcgctcagagcccgggctcggcctctgtctgtagctgc 60
                ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 38447163 tctcaggagtcttaacgcgctcgcgctcagagcccgggctcggcctcagtctgtagctgc 38447104

                                                                            
Query: 61       aggaatcgcttccctgcgctgcgtctccgcatccgcgtcttcggcctccccacctgcccg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38447103 aggaatcgcttccctgcgctgcgtctccgcatccgcgtcttcggcctccccacctgcccg 38447044

                                                                            
Query: 121      cttgcccggctgcgccatggaggcctaccataagcctgaccagcagaagctgcaggccct 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38447043 cttgcccggctgcgccatggaggcctaccataagcctgaccagcagaagctgcaggccct 38446984

                                                                            
Query: 181      gaaggacacggccaaccgcctgcgcatcagctccatccaggccaccactgcggccggctc 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38446983 gaaggacacggccaaccgcctgcgcatcagctccatccaggccaccactgcggccggctc 38446924

                   
Query: 241      cgg 243
                |||
Sbjct: 38446923 cgg 38446921



 Score =  394 bits (199), Expect = e-107
 Identities = 199/199 (100%)
 Strand = Plus / Minus

                                                                            
Query: 880      cacaggagtagaagataaggagtcttggcatgggaagcccctcccccagaacatggctga 939
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38423791 cacaggagtagaagataaggagtcttggcatgggaagcccctcccccagaacatggctga 38423732

                                                                            
Query: 940      tcaggtcatccaggaaatctacagccagatccagaacaaaaagaagatcctggccactcc 999
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38423731 tcaggtcatccaggaaatctacagccagatccagaacaaaaagaagatcctggccactcc 38423672

                                                                            
Query: 1000     accgcaggaagacgccccctcagtggacatcaccaacatccgaatgcccacgccacccag 1059
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38423671 accgcaggaagacgccccctcagtggacatcaccaacatccgaatgcccacgccacccag 38423612

                                   
Query: 1060     ctacaaagttggggacaag 1078
                |||||||||||||||||||
Sbjct: 38423611 ctacaaagttggggacaag 38423593



 Score =  387 bits (195), Expect = e-104
 Identities = 195/195 (100%)
 Strand = Plus / Minus

                                                                            
Query: 571      cagctaccgcgtctattgcttgctgggagacggggagctgtcagagggcgccgtgtggga 630
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38427045 cagctaccgcgtctattgcttgctgggagacggggagctgtcagagggcgccgtgtggga 38426986

                                                                            
Query: 631      ggctatggccttcgcgggcatctacaagctggacaaccttgtcgccattcttgacatcaa 690
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38426985 ggctatggccttcgcgggcatctacaagctggacaaccttgtcgccattcttgacatcaa 38426926

                                                                            
Query: 691      ccgcctgggccagagcgaccccgccccgctgcagcaccagatggatgtctaccagaagcg 750
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38426925 ccgcctgggccagagcgaccccgccccgctgcagcaccagatggatgtctaccagaagcg 38426866

                               
Query: 751      ctgcgaggcctttgg 765
                |||||||||||||||
Sbjct: 38426865 ctgcgaggcctttgg 38426851



 Score =  337 bits (170), Expect = 1e-89
 Identities = 170/170 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1077     agatagctacccgcaaggcctacgggcaggccctggccaagctgggccacgccagtgacc 1136
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38422899 agatagctacccgcaaggcctacgggcaggccctggccaagctgggccacgccagtgacc 38422840

                                                                            
Query: 1137     gcatcattgccctggacggggacaccaagaattccaccttctcagagctcttcaaaaagg 1196
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38422839 gcatcattgccctggacggggacaccaagaattccaccttctcagagctcttcaaaaagg 38422780

                                                                  
Query: 1197     agcacccagaccgcttcattgagtgctacatcgccgagcagaacatggtg 1246
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38422779 agcacccagaccgcttcattgagtgctacatcgccgagcagaacatggtg 38422730



 Score =  315 bits (159), Expect = 5e-83
 Identities = 159/159 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1243     ggtgagcatcgccgtgggctgcgccacacgcaacaggacagtgcccttctgcagcacgtt 1302
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38421722 ggtgagcatcgccgtgggctgcgccacacgcaacaggacagtgcccttctgcagcacgtt 38421663

                                                                            
Query: 1303     cgcggccttcttcacacgggccttcgaccagatccgcatggcggccatctccgagagcaa 1362
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38421662 cgcggccttcttcacacgggccttcgaccagatccgcatggcggccatctccgagagcaa 38421603

                                                       
Query: 1363     catcaacctctgcggctcccactgtggcgtgtccatcgg 1401
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 38421602 catcaacctctgcggctcccactgtggcgtgtccatcgg 38421564



 Score =  264 bits (133), Expect = 2e-67
 Identities = 133/133 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1400     ggggaagatgggccctcccagatggccctggaagacctggccatgtttcggtctgtcccc 1459
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38421427 ggggaagatgggccctcccagatggccctggaagacctggccatgtttcggtctgtcccc 38421368

                                                                            
Query: 1460     atgtcaactgtcttttacccaagcgatggtgtggctacagagaaggcagtggaattagca 1519
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38421367 atgtcaactgtcttttacccaagcgatggtgtggctacagagaaggcagtggaattagca 38421308

                             
Query: 1520     gccaatacaaagg 1532
                |||||||||||||
Sbjct: 38421307 gccaatacaaagg 38421295



 Score =  254 bits (128), Expect = 2e-64
 Identities = 128/128 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1708     agagaagatcaacatccgtgtgttggaccctttcaccgtcaagcccctggacaggaagct 1767
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38419461 agagaagatcaacatccgtgtgttggaccctttcaccgtcaagcccctggacaggaagct 38419402

                                                                            
Query: 1768     cattctcgacagtgcccgtgctaccaagggcaggatcctcaccgtggaggaccactacta 1827
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38419401 cattctcgacagtgcccgtgctaccaagggcaggatcctcaccgtggaggaccactacta 38419342

                        
Query: 1828     cgaaggtg 1835
                ||||||||
Sbjct: 38419341 cgaaggtg 38419334



 Score =  240 bits (121), Expect = 3e-60
 Identities = 121/121 (100%)
 Strand = Plus / Minus

                                                                            
Query: 765      gctggcacgccatcatcgtggacggacacagtgtggaggagctgtgcaaggccttcgggc 824
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38425095 gctggcacgccatcatcgtggacggacacagtgtggaggagctgtgcaaggccttcgggc 38425036

                                                                            
Query: 825      aggtcaagaaccagccgacagccatcatcgccaagaccttcaagggccgaggcatcacag 884
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38425035 aggtcaagaaccagccgacagccatcatcgccaagaccttcaagggccgaggcatcacag 38424976

                 
Query: 885      g 885
                |
Sbjct: 38424975 g 38424975



 Score =  238 bits (120), Expect = 1e-59
 Identities = 120/120 (100%)
 Strand = Plus / Minus

                                                                            
Query: 243      gccacccaacgtcatgctgcagtgctgccgagatcatggctgtcctctttttccacacca 302
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38432693 gccacccaacgtcatgctgcagtgctgccgagatcatggctgtcctctttttccacacca 38432634

                                                                            
Query: 303      tgcgctacaaggcccaggatccccggaaccctcacaatgaccgctttgtgctctccaagg 362
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38432633 tgcgctacaaggcccaggatccccggaaccctcacaatgaccgctttgtgctctccaagg 38432574



 Score =  230 bits (116), Expect = 3e-57
 Identities = 116/116 (100%)
 Strand = Plus / Minus

                                                                            
Query: 360      agggccacgcagcacctatcctgtattccgtgtgggctgaagccggcttcctgccagagg 419
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38431813 agggccacgcagcacctatcctgtattccgtgtgggctgaagccggcttcctgccagagg 38431754

                                                                        
Query: 420      cagagctgctgaacctgaggaagatcagctctgacctggatgggcaccctgtcccg 475
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38431753 cagagctgctgaacctgaggaagatcagctctgacctggatgggcaccctgtcccg 38431698



 Score =  196 bits (99), Expect = 4e-47
 Identities = 99/99 (100%)
 Strand = Plus / Minus

                                                                            
Query: 475      gaaacaagctttcactgatgtggccaccggatccctgggccagggccttggggccgcttg 534
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38430778 gaaacaagctttcactgatgtggccaccggatccctgggccagggccttggggccgcttg 38430719

                                                       
Query: 535      tgggatggcctacacaggcaaatacttcgacaaagccag 573
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 38430718 tgggatggcctacacaggcaaatacttcgacaaagccag 38430680



 Score =  190 bits (96), Expect = 2e-45
 Identities = 96/96 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1614     aggtggtcctgaagagcaaagatgaccaggtgaccgtgatcggggctggggtgaccctgc 1673
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38420528 aggtggtcctgaagagcaaagatgaccaggtgaccgtgatcggggctggggtgaccctgc 38420469

                                                    
Query: 1674     atgaggccttggccgctgctgacctgctcaagaaag 1709
                ||||||||||||||||||||||||||||||||||||
Sbjct: 38420468 atgaggccttggccgctgctgacctgctcaagaaag 38420433



 Score =  174 bits (88), Expect = 1e-40
 Identities = 88/88 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1530     agggtatctgctttatccggaccagccgcccagaaaacgccatcatctataacaacaacg 1589
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38420720 agggtatctgctttatccggaccagccgcccagaaaacgccatcatctataacaacaacg 38420661

                                            
Query: 1590     aagatttccaaattggacaagccaaggt 1617
                ||||||||||||||||||||||||||||
Sbjct: 38420660 aagatttccaaattggacaagccaaggt 38420633


>gb|GL896526.1| Sus scrofa unplaced genomic scaffold chrU_scaffold858
          Length = 41256

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                         
Query: 1148  ctggacggggacaccaagaattccaccttctcagagctcttcaaaaaggagcacccagac 1207
             ||||| || ||||||||||||||||||||||| ||| | ||||| |||||  |||| || 
Sbjct: 12489 ctggatggtgacaccaagaattccaccttctctgagatattcaagaaggaataccctgag 12430

                                                   
Query: 1208  cgcttcattgagtgctacatcgccgagcagaacatggt 1245
             |||||||| |||||||  || || ||||| ||||||||
Sbjct: 12429 cgcttcatcgagtgctttattgctgagcaaaacatggt 12392


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 51,943,397
Number of extensions: 279
Number of successful extensions: 279
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 15
Length of query: 2122
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2100
Effective length of database: 2,808,408,574
Effective search space: 5897658005400
Effective search space used: 5897658005400
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)