Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012445
(2122 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003906.1| transketolase [Bos taurus]. 1131 0.0
Alignment gi|NP_001039490.1| transketolase-like protein 2 [Bos taurus]. 787 0.0
Alignment gi|NP_001039437.1| transketolase-like protein 1 [Bos taurus]. 728 0.0
Alignment gi|XP_002683931.1| PREDICTED: putative chloroplast 1-deoxy-D-xy... 70 1e-11
Alignment gi|XP_001257222.2| PREDICTED: 1-deoxyxylulose 5-phosphate synth... 70 1e-11
>ref|NP_001003906.1| transketolase [Bos taurus].
Length = 623
Score = 1131 bits (2925), Expect = 0.0
Identities = 562/623 (90%), Positives = 586/623 (94%)
Frame = +2
Query: 137 MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 316
MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA
Sbjct: 1 MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 60
Query: 317 QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 496
DPRNPHNDRFVLSKGHAAPILY+VWAEAGFLPE+ELLNLRKI+SDLDGHPVPKQAFTDV
Sbjct: 61 LDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLPESELLNLRKINSDLDGHPVPKQAFTDV 120
Query: 497 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 676
ATGSLGQGLGAACGMAYTGKYFDKASYRVYC+LGDGELSEG+VWEAMAFA IYKLDNLVA
Sbjct: 121 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCMLGDGELSEGSVWEAMAFASIYKLDNLVA 180
Query: 677 ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQVKNQPTAIIA 856
ILDINRLGQSDPAPLQHQMD+YQKRCEAFGW+A+IVDGHSVEELCKAFGQVKNQPTAIIA
Sbjct: 181 ILDINRLGQSDPAPLQHQMDIYQKRCEAFGWNAVIVDGHSVEELCKAFGQVKNQPTAIIA 240
Query: 857 KTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 1036
KTFKGRGITG+EDKESWHGKPLP+NMADQ+IQEI QIQ+KKKILATPP+EDAPSVDITN
Sbjct: 241 KTFKGRGITGIEDKESWHGKPLPKNMADQIIQEISGQIQSKKKILATPPEEDAPSVDITN 300
Query: 1037 IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 1216
IRMPTPP+YKVGDKIATRKAYGQALAKLGHAS+RIIALDGDTKNSTFSELFKKEHPDRFI
Sbjct: 301 IRMPTPPNYKVGDKIATRKAYGQALAKLGHASNRIIALDGDTKNSTFSELFKKEHPDRFI 360
Query: 1217 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 1396
ECYIAEQNMVSIAVGCATR+RTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS
Sbjct: 361 ECYIAEQNMVSIAVGCATRDRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 420
Query: 1397 IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 1576
IGEDGPSQMALEDLAMFRS+PMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII
Sbjct: 421 IGEDGPSQMALEDLAMFRSIPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 480
Query: 1577 YNNNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPL 1756
Y +EDFQIGQAKVVLK+KDDQVTVIGAGVT INIRVLDPFT+KPL
Sbjct: 481 YKQHEDFQIGQAKVVLKNKDDQVTVIGAGVTLHEALAAADLLKREKINIRVLDPFTIKPL 540
Query: 1757 DRKLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAE 1936
D+KLILDSARATKGRILTVEDHYY P VTVTRLAVSQVPRSGKPAE
Sbjct: 541 DKKLILDSARATKGRILTVEDHYYEGGIGEAVASAVVGEPGVTVTRLAVSQVPRSGKPAE 600
Query: 1937 LLKMFGIDKDAIARAVRGLVTKA 2005
LLKMFGID+DAIA+AVRGLVT+A
Sbjct: 601 LLKMFGIDRDAIAQAVRGLVTRA 623
>ref|NP_001039490.1| transketolase-like protein 2 [Bos taurus].
Length = 626
Score = 787 bits (2032), Expect = 0.0
Identities = 389/614 (63%), Positives = 471/614 (76%), Gaps = 4/614 (0%)
Frame = +2
Query: 158 DQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRNPH 337
D +Q L+D ANRLR+ SI+AT A+GSGHPTSCCSAAEI++VLFFHTMRY+ +P +P
Sbjct: 8 DATTVQVLQDLANRLRVHSIRATCASGSGHPTSCCSAAEIVSVLFFHTMRYRQTEPAHPD 67
Query: 338 NDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQ 517
NDRFVLSKGHAAP+LY+ W EAG + E +LLNLR I DL+GHP P+ +F DVATGSLGQ
Sbjct: 68 NDRFVLSKGHAAPLLYAAWVEAGSISEPDLLNLRTIHCDLEGHPTPRLSFVDVATGSLGQ 127
Query: 518 GLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDINRL 697
GLGAACGMAYTGKY DKASYRV+CLLGDGE SEG+VWEA+AFA Y LDNLVA+ D+NRL
Sbjct: 128 GLGAACGMAYTGKYLDKASYRVFCLLGDGESSEGSVWEALAFASHYGLDNLVAVFDVNRL 187
Query: 698 GQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQV---KNQPTAIIAKTFK 868
GQS APL+H D+Y+ RCEAFGW+ +VDGH VE LC+AF Q KN+PTAIIAKT+K
Sbjct: 188 GQSGVAPLKHCTDIYRNRCEAFGWNTYLVDGHDVEALCQAFSQAAQGKNKPTAIIAKTYK 247
Query: 869 GRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIRMP 1048
GRGI VED E+WHGKPLP+ AD++I+ I SQI+ + +L PP E +P V ITNI+M
Sbjct: 248 GRGIPNVEDAENWHGKPLPKERADEIIRLIKSQIKTNRNLLPKPPVEGSPPVSITNIKMT 307
Query: 1049 TPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIECYI 1228
P YKVGDK+AT+KAYG ALAKLG A++R++ LDGD KNSTF E+FKKEHP+RFIEC+
Sbjct: 308 CLPDYKVGDKVATQKAYGLALAKLGLANERVVVLDGDPKNSTFFEIFKKEHPERFIECFA 367
Query: 1229 AEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGED 1408
AEQNMVS+A+GCATR RT+ F +T AF TRAFDQIRM AIS+SNINL GSHCGVS+GED
Sbjct: 368 AEQNMVSVALGCATRGRTITFVTTLGAFLTRAFDQIRMGAISQSNINLIGSHCGVSVGED 427
Query: 1409 GPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYNNN 1588
GPSQMALEDLAMFRS+P TVF PSD V+TE AV LAAN++G+CFIRT+R E A+IY
Sbjct: 428 GPSQMALEDLAMFRSIPNCTVFLPSDAVSTEHAVYLAANSEGMCFIRTNRSETAVIYTPQ 487
Query: 1589 EDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDRKL 1768
E F+IG+AKV+ S +D+VTVIGAGVT I+I V+DPFT+KPLD
Sbjct: 488 EHFEIGRAKVIRHSNNDKVTVIGAGVTLHEALAAADALSQQDISICVIDPFTIKPLDAAT 547
Query: 1769 ILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQV-PRSGKPAELLK 1945
I+ A+AT GR++TVEDHY P + V +L+VS V R+ KP+ELL
Sbjct: 548 IISCAKATDGRVVTVEDHYQEGGIGEAVCAAVSGEPAIHVHQLSVSGVSERNRKPSELLS 607
Query: 1946 MFGIDKDAIARAVR 1987
+FG+ I AV+
Sbjct: 608 IFGVSARHIIAAVK 621
>ref|NP_001039437.1| transketolase-like protein 1 [Bos taurus].
Length = 596
Score = 728 bits (1879), Expect = 0.0
Identities = 367/620 (59%), Positives = 445/620 (71%), Gaps = 3/620 (0%)
Frame = +2
Query: 152 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 331
KPD + LQ L+D ANRLRI SI+AT A+ SGHP SC SAAEIM+VLFFH MRYK DP+N
Sbjct: 15 KPDSKTLQILRDMANRLRIHSIRATCASSSGHPISCSSAAEIMSVLFFHVMRYKQADPKN 74
Query: 332 PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 511
P NDRF+LSK + +F DVATG L
Sbjct: 75 PDNDRFILSK--------------------------------------RLSFVDVATGWL 96
Query: 512 GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 691
GQGLGAACGMAYTGKYFDKASYRV+CL+GD E EG+VWEA+AFA Y LDNLVAI D+N
Sbjct: 97 GQGLGAACGMAYTGKYFDKASYRVFCLVGDVESWEGSVWEALAFASHYSLDNLVAIFDVN 156
Query: 692 RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAF---GQVKNQPTAIIAKT 862
RL S PL+H +DVYQKRCEAFGW+ ++VDG VE LC+ F Q+KN+PTA++AKT
Sbjct: 157 RLTHSTTLPLEHSIDVYQKRCEAFGWNTLVVDGRDVEALCQVFWQAAQMKNKPTAVVAKT 216
Query: 863 FKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIR 1042
FKGRGI VED E+WHGKP+P+ AD +I+ I SQI+ K + P ED+P ++I+ I
Sbjct: 217 FKGRGIPSVEDAENWHGKPMPKERADAIIKLIESQIETNKSLEPKAPIEDSPQINISVIE 276
Query: 1043 MPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIEC 1222
M +PP Y++ D IATRKA G ALAKLGHA+DR+I LDGDTKNSTFS++FK+EHP+RFIEC
Sbjct: 277 MTSPPDYEISDVIATRKACGLALAKLGHANDRVIVLDGDTKNSTFSDIFKREHPERFIEC 336
Query: 1223 YIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIG 1402
+IAEQNMVS+A+GC TR RTV F TFAAF TRAFDQIRM IS++NINL GSHCGVSIG
Sbjct: 337 FIAEQNMVSVALGCVTRGRTVAFACTFAAFLTRAFDQIRMGGISQTNINLIGSHCGVSIG 396
Query: 1403 EDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYN 1582
EDGPSQMALEDLAMFR++P T+FYPSD ++TE AV LAAN KG+C+IRTSRPE AIIY
Sbjct: 397 EDGPSQMALEDLAMFRAIPNCTIFYPSDAISTEHAVFLAANIKGMCYIRTSRPETAIIYT 456
Query: 1583 NNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDR 1762
E F+IGQAKV+ +S +D++TV+GAG+T I++RV+D FTVKPLD
Sbjct: 457 PQESFEIGQAKVIRQSVNDKITVVGAGITLHEALAAADDLSKQGISLRVIDLFTVKPLDA 516
Query: 1763 KLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELL 1942
I+ +A+AT G+I+TVEDHY PD+ V LAVS +PRSGKP++LL
Sbjct: 517 ATIISNAKATGGQIITVEDHYPEGGIGEAVSAAVSMEPDIVVHHLAVSGIPRSGKPSDLL 576
Query: 1943 KMFGIDKDAIARAVRGLVTK 2002
MFGI I AV ++ K
Sbjct: 577 DMFGISSKHIIWAVERILMK 596
>ref|XP_002683931.1| PREDICTED: putative chloroplast 1-deoxy-D-xylulose 5-phosphate
synthase-like, partial [Bos taurus].
Length = 409
Score = 69.7 bits (169), Expect = 1e-11
Identities = 88/391 (22%), Positives = 148/391 (37%), Gaps = 47/391 (12%)
Frame = +2
Query: 455 LDGHPVPKQAFTDV-ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWE 631
+ G P ++ D T + AA GMA K + V ++GDG +S G +E
Sbjct: 19 ISGFPQRAESVYDTFGTAHSSTSISAALGMALAAKRKGDNRHAV-AIIGDGAMSAGMAFE 77
Query: 632 AMAFAGIYKLDNLVAILDINRLGQSDPA-------------------------------P 718
A+ AG+ NL+ +L+ N + S P P
Sbjct: 78 ALNNAGVADC-NLLVVLNDNDMSISPPVGALNRYLAQLMSGQFYAAAKNVGKTVLRPVPP 136
Query: 719 LQHQMDVYQKRC----------EAFGWHAI-IVDGHSVEELCKAFGQVKNQ--PTAIIAK 859
L ++++ E FG++ I +DGH ++ L +K+ P +
Sbjct: 137 LLEFAKRFEQQAKGMVVPATLFEKFGFNYIGPIDGHDLDSLIPTLENIKSLKGPQFLHVV 196
Query: 860 TFKGRGITGVE-DKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 1036
T KG+G E D ++HG P + PSV +T
Sbjct: 197 TKKGQGYKLAEADPVAYHG-----------------------------PGKFDPSVGLT- 226
Query: 1037 IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 1216
+ TPP K + +GQ L + R++ + + + F+K PDR+
Sbjct: 227 -KPATPP------KQTFTQVFGQWLCDMAAQDPRLVGITPAMREGSGMVEFEKRFPDRYY 279
Query: 1217 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQ-IRMAAISESNINLCGSHCGV 1393
+ IAEQ+ V+ A G A P + ++ F R +DQ I A+ + G+
Sbjct: 280 DVGIAEQHAVTFAAGMACEG-VKPVVAIYSTFLQRGYDQLIHDVALQNLPVVFALDRAGL 338
Query: 1394 SIGEDGPSQMALEDLAMFRSVPMSTVFYPSD 1486
+G DG + D+ R +P ++ P+D
Sbjct: 339 -VGADGATHAGAYDIPFVRCIPNMSMACPAD 368
>ref|XP_001257222.2| PREDICTED: 1-deoxyxylulose 5-phosphate synthase-like, partial [Bos
taurus].
Length = 414
Score = 69.7 bits (169), Expect = 1e-11
Identities = 88/391 (22%), Positives = 148/391 (37%), Gaps = 47/391 (12%)
Frame = +2
Query: 455 LDGHPVPKQAFTDV-ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWE 631
+ G P ++ D T + AA GMA K + V ++GDG +S G +E
Sbjct: 24 ISGFPQRAESVYDTFGTAHSSTSISAALGMALAAKRKGDNRHAV-AIIGDGAMSAGMAFE 82
Query: 632 AMAFAGIYKLDNLVAILDINRLGQSDPA-------------------------------P 718
A+ AG+ NL+ +L+ N + S P P
Sbjct: 83 ALNNAGVADC-NLLVVLNDNDMSISPPVGALNRYLAQLMSGQFYAAAKNVGKTVLRPVPP 141
Query: 719 LQHQMDVYQKRC----------EAFGWHAI-IVDGHSVEELCKAFGQVKNQ--PTAIIAK 859
L ++++ E FG++ I +DGH ++ L +K+ P +
Sbjct: 142 LLEFAKRFEQQAKGMVVPATLFEKFGFNYIGPIDGHDLDSLIPTLENIKSLKGPQFLHVV 201
Query: 860 TFKGRGITGVE-DKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 1036
T KG+G E D ++HG P + PSV +T
Sbjct: 202 TKKGQGYKLAEADPVAYHG-----------------------------PGKFDPSVGLT- 231
Query: 1037 IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 1216
+ TPP K + +GQ L + R++ + + + F+K PDR+
Sbjct: 232 -KPATPP------KQTFTQVFGQWLCDMAAQDPRLVGITPAMREGSGMVEFEKRFPDRYY 284
Query: 1217 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQ-IRMAAISESNINLCGSHCGV 1393
+ IAEQ+ V+ A G A P + ++ F R +DQ I A+ + G+
Sbjct: 285 DVGIAEQHAVTFAAGMACEG-VKPVVAIYSTFLQRGYDQLIHDVALQNLPVVFALDRAGL 343
Query: 1394 SIGEDGPSQMALEDLAMFRSVPMSTVFYPSD 1486
+G DG + D+ R +P ++ P+D
Sbjct: 344 -VGADGATHAGAYDIPFVRCIPNMSMACPAD 373
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 84,663,302
Number of extensions: 2464828
Number of successful extensions: 13033
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 12835
Number of HSP's successfully gapped: 6
Length of query: 707
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 598
Effective length of database: 14,074,782
Effective search space: 8416719636
Effective search space used: 8416719636
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012445
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012445
(2122 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533792.2| PREDICTED: similar to Transketolase (TK) [Canis... 1017 0.0
Alignment gi|XP_538204.2| PREDICTED: similar to transketolase-like 1 [Can... 739 0.0
Alignment gi|XP_861013.1| PREDICTED: hypothetical protein XP_855920 [Cani... 50 9e-06
>ref|XP_533792.2| PREDICTED: similar to Transketolase (TK) [Canis familiaris].
Length = 619
Score = 1017 bits (2630), Expect = 0.0
Identities = 503/615 (81%), Positives = 538/615 (87%), Gaps = 25/615 (4%)
Frame = +2
Query: 236 GSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLP 415
G GHPTSCCSAAEIMAVLFFHTMRYK QDPRNPHNDRFVLSKGHAAPILY+VWAEAGFL
Sbjct: 5 GLGHPTSCCSAAEIMAVLFFHTMRYKPQDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLT 64
Query: 416 EAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLL 595
E ELLNLRKI+SDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYC++
Sbjct: 65 EEELLNLRKITSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCMM 124
Query: 596 GDGELSEGAVWEAMAFAGIYKLDNLVAILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHA 775
GDGELSEG+VWEAMAFA IYKLDNL+AILDINRLGQSDP PLQHQ+DVYQKRCE+FGWHA
Sbjct: 125 GDGELSEGSVWEAMAFASIYKLDNLIAILDINRLGQSDPTPLQHQVDVYQKRCESFGWHA 184
Query: 776 IIVDGHSVEELCKAFGQVKNQPTAIIAKTFKGRGITGVEDKESWHGKPLPQNMADQVIQE 955
+IVDGHSVEELCKAFGQ K+QPTAIIAKTFKGRGI G+EDK+ WHGKPLP+NMADQ++QE
Sbjct: 185 VIVDGHSVEELCKAFGQAKHQPTAIIAKTFKGRGIPGIEDKDGWHGKPLPKNMADQIVQE 244
Query: 956 IYSQIQNKKKILATPPQEDAPSVDITNIRMPTPPSYKVGDKIATRKAYGQALAKLGHASD 1135
IY+QIQ++KKIL TPPQEDAPSV+ITNIRMP+PPSYKVGDKIATRKAYGQALAKLG A D
Sbjct: 245 IYNQIQSQKKILVTPPQEDAPSVNITNIRMPSPPSYKVGDKIATRKAYGQALAKLGRAHD 304
Query: 1136 RIIALDGDTKNSTFSELFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFF 1315
RIIALDGDTKNSTFSE+F+KEHPDRFIECYIAEQNMVS+AVGCATRNRTVPFCS F AFF
Sbjct: 305 RIIALDGDTKNSTFSEIFRKEHPDRFIECYIAEQNMVSVAVGCATRNRTVPFCSAFGAFF 364
Query: 1316 TRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVA 1495
TRAFDQIRMAAISESNIN CGSHCGVSIGEDGPSQMALEDLAMFRS+P +T+FYPSDGV+
Sbjct: 365 TRAFDQIRMAAISESNINFCGSHCGVSIGEDGPSQMALEDLAMFRSIPTATIFYPSDGVS 424
Query: 1496 TEKAVELAANTKGICFIRTSRPENAIIYNNNEDFQIGQAKVVLKSKDDQVTVIGAGVT-- 1669
TEKAVELAANTKGICFIRTSRPENAIIYNNNEDFQI QAKVVLKSKDDQVTVIGAGVT
Sbjct: 425 TEKAVELAANTKGICFIRTSRPENAIIYNNNEDFQIKQAKVVLKSKDDQVTVIGAGVTLH 484
Query: 1670 -----------------------XXXXXXXXXXXXXXXINIRVLDPFTVKPLDRKLILDS 1780
INIRVLDPFT+KPLDR LIL+S
Sbjct: 485 EALAAAELLKKGIWEDEAKPTPCIPLGHAPGFSPLTEKINIRVLDPFTIKPLDRNLILES 544
Query: 1781 ARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELLKMFGID 1960
ARATKGRI+TVEDHYY P +TV+RLAV +VPRSGKPAELLKMFGID
Sbjct: 545 ARATKGRIVTVEDHYYEGGIGEAVSSALVGEPGITVSRLAVGEVPRSGKPAELLKMFGID 604
Query: 1961 KDAIARAVRGLVTKA 2005
+DAIA+AVR LV KA
Sbjct: 605 RDAIAQAVRDLVAKA 619
>ref|XP_538204.2| PREDICTED: similar to transketolase-like 1 [Canis familiaris].
Length = 596
Score = 739 bits (1908), Expect = 0.0
Identities = 374/615 (60%), Positives = 446/615 (72%), Gaps = 3/615 (0%)
Frame = +2
Query: 152 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 331
KPD + LQ L+D ANRLRI SI+AT + SGHPTSC SAAEIM+VLFFH MRYK +DP N
Sbjct: 15 KPDSKTLQVLRDMANRLRIHSIRATCVSSSGHPTSCSSAAEIMSVLFFHIMRYKQEDPEN 74
Query: 332 PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 511
P NDRF+ SK + +F DVATG L
Sbjct: 75 PDNDRFIASK--------------------------------------RLSFVDVATGWL 96
Query: 512 GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 691
GQGLGAACGMAYTGKYFDKASYRV+CL+GDGE SEG+VWEA+AFA Y LDNLVAI D+N
Sbjct: 97 GQGLGAACGMAYTGKYFDKASYRVFCLMGDGESSEGSVWEALAFASHYNLDNLVAIFDVN 156
Query: 692 RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQ---VKNQPTAIIAKT 862
R+G S PL+H +D+YQKRCEAFGW+ +VDG VE LC+ F Q VKN+PTA++AKT
Sbjct: 157 RVGHSGGLPLEHCIDIYQKRCEAFGWNTYVVDGRDVEALCQVFWQASEVKNKPTAVVAKT 216
Query: 863 FKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIR 1042
FKGRGI VED E+WHGKP+P+ AD +I+ I SQI+ K + PP ED+P V+I +I
Sbjct: 217 FKGRGIPSVEDAENWHGKPMPKERADAIIKLIESQIETNKNLEPKPPIEDSPPVNILDIE 276
Query: 1043 MPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIEC 1222
M +PP+Y VG++IATRKA G ALAKLGHA+DR+I LDGDTKNSTFS++FK+EHP+RFIEC
Sbjct: 277 MASPPAYTVGEQIATRKACGLALAKLGHANDRVIVLDGDTKNSTFSDIFKREHPERFIEC 336
Query: 1223 YIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIG 1402
YIAEQNMVS+A+GCATR RTV F STFAAF TRAFDQIRM AISE+NINL GSHCGVS+G
Sbjct: 337 YIAEQNMVSVALGCATRGRTVAFVSTFAAFLTRAFDQIRMGAISETNINLIGSHCGVSVG 396
Query: 1403 EDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYN 1582
EDGPSQMALEDLAMFRSV T+FYPSD +TE A+ LAANTKG+C+IR SRPE A+IY
Sbjct: 397 EDGPSQMALEDLAMFRSVRNCTIFYPSDATSTEHAILLAANTKGMCYIRASRPETAVIYT 456
Query: 1583 NNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDR 1762
E F +GQAKV+ + +D+VTV+GAGVT I+IRV+D FT+KPLD
Sbjct: 457 PQESFAVGQAKVIRRDVNDKVTVVGAGVTLHEALAAAEDLSKEDISIRVIDLFTIKPLDV 516
Query: 1763 KLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELL 1942
I+ +A+AT GRI+TVEDHY PD+ V +LAV+ VPRSGKP ELL
Sbjct: 517 TTIISNAKATGGRIITVEDHYPEGGIGEAVCAAVSMEPDILVHQLAVAGVPRSGKPGELL 576
Query: 1943 KMFGIDKDAIARAVR 1987
MFG+ I AV+
Sbjct: 577 DMFGVSARHIIVAVK 591
>ref|XP_861013.1| PREDICTED: hypothetical protein XP_855920 [Canis familiaris].
Length = 335
Score = 50.1 bits (118), Expect = 9e-06
Identities = 49/141 (34%), Positives = 67/141 (47%), Gaps = 10/141 (7%)
Frame = +3
Query: 1008 KTPPQWTSPTSECPRH--PATKLGTR*LPARPT-GRPWPSWATP----VTASLPWTGTP- 1163
++ P ++PT P PA R PAR T GR PS +TP + S P TP
Sbjct: 110 RSTPSRSTPTRSTPSRSTPARSTPARSTPARSTPGRSTPSRSTPGRSTPSRSTPSRSTPG 169
Query: 1164 RIPPSQSSSKRSTQTASLSATS-PSRTW*ASPWAAPHATGQCPSAARSRPSSHGPSTRSA 1340
R PS+S+ RST S A S PSR+ A +T + ARS PS PS +
Sbjct: 170 RSTPSRSTPSRSTPARSTPARSTPSRSTPARS-TPSRSTPSRSTPARSTPSRSTPSRSTP 228
Query: 1341 WRPSP-RATSTSAAPTVACPS 1400
R +P R+T + P+ + P+
Sbjct: 229 SRSTPSRSTPARSTPSRSTPA 249
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 88,035,497
Number of extensions: 2526262
Number of successful extensions: 13110
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12888
Number of HSP's successfully gapped: 5
Length of query: 707
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 597
Effective length of database: 15,207,544
Effective search space: 9078903768
Effective search space used: 9078903768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012445
(2122 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106151.1| transketolase [Sus scrofa]. 1176 0.0
Alignment gi|XP_003362245.1| PREDICTED: LOW QUALITY PROTEIN: transketolas... 701 0.0
>ref|NP_001106151.1| transketolase [Sus scrofa].
Length = 623
Score = 1176 bits (3043), Expect = 0.0
Identities = 593/623 (95%), Positives = 593/623 (95%)
Frame = +2
Query: 137 MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 316
MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA
Sbjct: 1 MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 60
Query: 317 QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 496
QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV
Sbjct: 61 QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 120
Query: 497 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 676
ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA
Sbjct: 121 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 180
Query: 677 ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQVKNQPTAIIA 856
ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQVKNQPTAIIA
Sbjct: 181 ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQVKNQPTAIIA 240
Query: 857 KTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 1036
KTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN
Sbjct: 241 KTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 300
Query: 1037 IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 1216
IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI
Sbjct: 301 IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 360
Query: 1217 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 1396
ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS
Sbjct: 361 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 420
Query: 1397 IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 1576
IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII
Sbjct: 421 IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 480
Query: 1577 YNNNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPL 1756
YNNNEDFQIGQAKVVLKSKDDQVTVIGAGVT INIRVLDPFTVKPL
Sbjct: 481 YNNNEDFQIGQAKVVLKSKDDQVTVIGAGVTLHEALAAADLLKKEKINIRVLDPFTVKPL 540
Query: 1757 DRKLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAE 1936
DRKLILDSARATKGRILTVEDHYY PDVTVTRLAVSQVPRSGKPAE
Sbjct: 541 DRKLILDSARATKGRILTVEDHYYEGGLGEAVAAAVVGEPDVTVTRLAVSQVPRSGKPAE 600
Query: 1937 LLKMFGIDKDAIARAVRGLVTKA 2005
LLKMFGIDKDAIARAVRGLVTKA
Sbjct: 601 LLKMFGIDKDAIARAVRGLVTKA 623
>ref|XP_003362245.1| PREDICTED: LOW QUALITY PROTEIN: transketolase-like protein 1-like
[Sus scrofa].
Length = 557
Score = 701 bits (1808), Expect = 0.0
Identities = 350/587 (59%), Positives = 425/587 (72%), Gaps = 3/587 (0%)
Frame = +2
Query: 224 TTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRNPHNDRFVLSKGHAAPILYSVWAEA 403
T A HPTSC SAAEIM+VL FH M+YK DP NP NDR VLSK
Sbjct: 2 TCAVSFSHPTSCSSAAEIMSVLCFHVMKYKQTDPENPDNDRLVLSK-------------- 47
Query: 404 GFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRV 583
+ +F DVA G LGQGLGAACGMAYTGKYFDKASYRV
Sbjct: 48 ------------------------RLSFVDVAIGWLGQGLGAACGMAYTGKYFDKASYRV 83
Query: 584 YCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDINRLGQSDPAPLQHQMDVYQKRCEAF 763
+CL+GDGE SEG+VWEA+AFA Y LDNLVA+ D+NRL S PL+H +DVYQKRCEAF
Sbjct: 84 FCLMGDGESSEGSVWEALAFASHYSLDNLVAVFDVNRLSHSGTLPLEHCIDVYQKRCEAF 143
Query: 764 GWHAIIVDGHSVEELCKAF---GQVKNQPTAIIAKTFKGRGITGVEDKESWHGKPLPQNM 934
GW +VDG VE LC+ F Q+K++PTA++AKTFKGRG+ VED E+WHGKP+P+
Sbjct: 144 GWKTFVVDGRDVEALCQVFWQASQMKSKPTAVVAKTFKGRGVPSVEDAENWHGKPMPKER 203
Query: 935 ADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIRMPTPPSYKVGDKIATRKAYGQALA 1114
AD +I+ I SQIQ + + PP ED+P ++IT+I M +PP+YK+GD +ATRKA G ALA
Sbjct: 204 ADAIIKLIESQIQTNRNLEPKPPVEDSPQINITDIEMTSPPAYKIGDVVATRKACGLALA 263
Query: 1115 KLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFC 1294
KLGHA+DR+I LDGDTKNSTFSE+FKKE+P+RFIEC+IAEQNMV++A+GCATR+RTV F
Sbjct: 264 KLGHANDRVIVLDGDTKNSTFSEIFKKEYPERFIECFIAEQNMVNVALGCATRDRTVAFV 323
Query: 1295 STFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPMSTVF 1474
TFAAF TRAFDQIR+ AI+++NINL GSHCGVS+GEDGPSQMALEDLAMFR++P TVF
Sbjct: 324 CTFAAFLTRAFDQIRVGAIAQTNINLVGSHCGVSVGEDGPSQMALEDLAMFRAIPNCTVF 383
Query: 1475 YPSDGVATEKAVELAANTKGICFIRTSRPENAIIYNNNEDFQIGQAKVVLKSKDDQVTVI 1654
YPSD V+TE AV LAANTKGIC+IRTSRPE+A++Y E FQIGQAKV+ +S +D++TV+
Sbjct: 384 YPSDAVSTEHAVFLAANTKGICYIRTSRPESAVVYTPQESFQIGQAKVIRQSVNDKITVV 443
Query: 1655 GAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDRKLILDSARATKGRILTVEDHYYXX 1834
GAGVT I++RV+D FTVKPLD I+ +A+AT GRI+TVEDHY
Sbjct: 444 GAGVTLHEALAAADELSKQDISVRVIDLFTVKPLDAATIISNAKATGGRIITVEDHYPEG 503
Query: 1835 XXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELLKMFGIDKDAIA 1975
PD+ V +LAV VPRSGKP+ELL +FGI +A
Sbjct: 504 GIGEAICAAVSMEPDILVHQLAVPGVPRSGKPSELLDVFGISAXIVA 550
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 54,887,933
Number of extensions: 1622330
Number of successful extensions: 8248
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8168
Number of HSP's successfully gapped: 3
Length of query: 707
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 601
Effective length of database: 8,704,850
Effective search space: 5231614850
Effective search space used: 5231614850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012445
(2122 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033414.1| transketolase [Mus musculus]. 1132 0.0
Alignment gi|NP_083203.2| transketolase-like protein 2 [Mus musculus]. 819 0.0
Alignment gi|NP_113556.2| transketolase-like protein 1 [Mus musculus]. 640 0.0
>ref|NP_033414.1| transketolase [Mus musculus].
Length = 623
Score = 1132 bits (2929), Expect = 0.0
Identities = 562/622 (90%), Positives = 583/622 (93%)
Frame = +2
Query: 137 MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 316
ME YHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA
Sbjct: 1 MEGYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 60
Query: 317 QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 496
DPRNPHNDRFVLSKGHAAPILY+VWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV
Sbjct: 61 LDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 120
Query: 497 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 676
ATGSLGQGLGAACGMAYTGKYFDKASYRVYC+LGDGE+SEG+VWEAMAFAGIYKLDNLVA
Sbjct: 121 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCMLGDGEVSEGSVWEAMAFAGIYKLDNLVA 180
Query: 677 ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQVKNQPTAIIA 856
I DINRLGQSDPAPLQHQ+D+YQKRCEAFGWH IIVDGHSVEELCKAFGQ K+QPTAIIA
Sbjct: 181 IFDINRLGQSDPAPLQHQVDIYQKRCEAFGWHTIIVDGHSVEELCKAFGQAKHQPTAIIA 240
Query: 857 KTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 1036
KTFKGRGITG+EDKE+WHGKPLP+NMA+Q+IQEIYSQ+Q+KKKILATPPQEDAPSVDI N
Sbjct: 241 KTFKGRGITGIEDKEAWHGKPLPKNMAEQIIQEIYSQVQSKKKILATPPQEDAPSVDIAN 300
Query: 1037 IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 1216
IRMPTPPSYKVGDKIATRKAYG ALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI
Sbjct: 301 IRMPTPPSYKVGDKIATRKAYGLALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 360
Query: 1217 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 1396
ECYIAEQNMVSIAVGCATR+RTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS
Sbjct: 361 ECYIAEQNMVSIAVGCATRDRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 420
Query: 1397 IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 1576
IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII
Sbjct: 421 IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 480
Query: 1577 YNNNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPL 1756
Y+NNEDFQ+GQAKVVLKSKDDQVTVIGAGVT I+IRVLDPFT+KPL
Sbjct: 481 YSNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAESLKKDKISIRVLDPFTIKPL 540
Query: 1757 DRKLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAE 1936
DRKLILDSARATKGRILTVEDHYY P VTVTRLAVSQVPRSGKPAE
Sbjct: 541 DRKLILDSARATKGRILTVEDHYYEGGIGEAVSAAVVGEPGVTVTRLAVSQVPRSGKPAE 600
Query: 1937 LLKMFGIDKDAIARAVRGLVTK 2002
LLKMFGIDKDAI +AV+GLVTK
Sbjct: 601 LLKMFGIDKDAIVQAVKGLVTK 622
>ref|NP_083203.2| transketolase-like protein 2 [Mus musculus].
Length = 627
Score = 819 bits (2116), Expect = 0.0
Identities = 405/620 (65%), Positives = 482/620 (77%), Gaps = 3/620 (0%)
Frame = +2
Query: 152 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 331
K + Q L+D ANRLRI SI+AT A SGHPTSCCS AEIMAVLFFHTMRYK DP +
Sbjct: 8 KLESDTFQVLQDVANRLRIHSIRATCACSSGHPTSCCSVAEIMAVLFFHTMRYKQADPEH 67
Query: 332 PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 511
P NDRFVLSKGHAAPILY+VW E G + E++LLNLRKI DL+GHP P+ +F DVATGSL
Sbjct: 68 PDNDRFVLSKGHAAPILYAVWVEVGRICESDLLNLRKIHCDLEGHPTPRLSFVDVATGSL 127
Query: 512 GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 691
GQGLGAACGMAYTGKYFDKASYRV+CL+GDGE SEG+VWEA+AFA Y LDNLVAI D+N
Sbjct: 128 GQGLGAACGMAYTGKYFDKASYRVFCLMGDGESSEGSVWEALAFASHYNLDNLVAIFDVN 187
Query: 692 RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAF---GQVKNQPTAIIAKT 862
RLGQS APL+H VY+KRC+AFGW+ +VDGH VE LC+AF QVKN+PTA+IAKT
Sbjct: 188 RLGQSGTAPLEHCTAVYEKRCQAFGWNTYVVDGHDVEALCQAFWKAAQVKNKPTALIAKT 247
Query: 863 FKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIR 1042
FKGRGI VED E+WHGKP+P++ AD +++ I ++IQ + + PP ED+P + ++N +
Sbjct: 248 FKGRGIPNVEDAENWHGKPMPKDRADGIVKLIENRIQTNRNLTPKPPIEDSPRISMSNTK 307
Query: 1043 MPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIEC 1222
M + P YK+GD IATR+AYG ALAKLG ++ R+I LDGDTKNSTFSE+FKKEHP+RFIEC
Sbjct: 308 MTSLPVYKLGDMIATREAYGLALAKLGQSNQRVIVLDGDTKNSTFSEVFKKEHPERFIEC 367
Query: 1223 YIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIG 1402
+IAEQNMVS+A+GCATR RT+ F STFAAF TRAFDQIRM AIS++NIN GSHCGVS+G
Sbjct: 368 FIAEQNMVSVALGCATRGRTIAFVSTFAAFLTRAFDQIRMGAISQTNINFVGSHCGVSVG 427
Query: 1403 EDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYN 1582
EDGPSQMALEDLAMFRS+P TVFYPSD V+TE AV LAANTKG+CFIRT+RP+ A+IY
Sbjct: 428 EDGPSQMALEDLAMFRSIPNCTVFYPSDAVSTEHAVYLAANTKGMCFIRTTRPKTAVIYT 487
Query: 1583 NNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDR 1762
E+F IGQAKV+ +S D+VTVIGAGVT I IRV+D FT+KPLD
Sbjct: 488 AEENFVIGQAKVIRQSAVDKVTVIGAGVTLHEALVAAEELSQQGIFIRVIDLFTIKPLDA 547
Query: 1763 KLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELL 1942
I+ SA+AT G+I+TVEDHY PD+ V +LAV++VPRSGKP+ELL
Sbjct: 548 VTIIQSAKATGGQIITVEDHYREGGIGEAVCAAISREPDIVVRQLAVTEVPRSGKPSELL 607
Query: 1943 KMFGIDKDAIARAVRGLVTK 2002
MFGI I AV+ V K
Sbjct: 608 DMFGISARHIIAAVKDTVMK 627
>ref|NP_113556.2| transketolase-like protein 1 [Mus musculus].
Length = 595
Score = 640 bits (1652), Expect = 0.0
Identities = 334/614 (54%), Positives = 418/614 (68%), Gaps = 3/614 (0%)
Frame = +2
Query: 155 PDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRNP 334
PD++ LQ L+D ANRLRI SI+AT ++ + + C S AEIM+VLFF+TMRYK +DP NP
Sbjct: 16 PDEKTLQVLRDMANRLRIRSIKATNSSTTSYLIPC-SNAEIMSVLFFYTMRYKQEDPENP 74
Query: 335 HNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLG 514
NDR +LSKG LP F +VATG G
Sbjct: 75 DNDRCILSKG---------------LP-----------------------FVNVATGWPG 96
Query: 515 QGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDINR 694
QGLGAACGMAYTGKYFD+ASYRV+CLLGD E +EG+VWEA AFA Y LDNL+AI D+NR
Sbjct: 97 QGLGAACGMAYTGKYFDQASYRVFCLLGDEESTEGSVWEAFAFASYYNLDNLMAIFDVNR 156
Query: 695 LGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQ---VKNQPTAIIAKTF 865
+G S ++H + +YQKRCEAFGW+ +VDG V+ LC F Q V+ +PTA++AKTF
Sbjct: 157 IGHSSSMSVEHCIAIYQKRCEAFGWNTYVVDGRDVKTLCHVFSQAAQVRGKPTAVVAKTF 216
Query: 866 KGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIRM 1045
K RG+ VED ESW+G+P+P+ AD +++ I SQIQ K ++ +PP ED+P ++I NI M
Sbjct: 217 KARGMPNVEDAESWYGRPMPKERADAIVKLIESQIQTNKILVPSPPIEDSPQINIMNICM 276
Query: 1046 PTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIECY 1225
+PP Y DK++T++A G ALAKLGH +DR+I L DTKN FS++FKKEHP+RFI+C
Sbjct: 277 TSPPVYVADDKVSTQRACGLALAKLGHENDRVIVLGSDTKNCNFSDIFKKEHPERFIQCC 336
Query: 1226 IAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGE 1405
IAEQNMV++A+GC+TR+RT+ F +FAAFFTRAFDQIR+ AIS+ NINL G HCGVS G+
Sbjct: 337 IAEQNMVNVALGCSTRDRTIVFAYSFAAFFTRAFDQIRLGAISQININLIGCHCGVSTGD 396
Query: 1406 DGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYNN 1585
D P MALEDLAMFR++P VFYPSD V+TE AV LAANTK +CFIRTS+ E AIIY
Sbjct: 397 DNPYHMALEDLAMFRAIPNCVVFYPSDAVSTEHAVYLAANTKEMCFIRTSQAETAIIYTT 456
Query: 1586 NEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDRK 1765
E FQIGQAKVV S +D+V VIGAGVT I+IRV+D FT+KPLD
Sbjct: 457 QETFQIGQAKVVRHSDNDKVIVIGAGVTLHEALVAAAELSKEDISIRVIDLFTIKPLDIA 516
Query: 1766 LILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELLK 1945
I+ +A+AT GRI+TVEDHY P++ V LAV VPRSG+ E L
Sbjct: 517 TIISNAKATGGRIITVEDHYPEGGIGGAVCAAVSMEPNIVVHNLAVMDVPRSGRCNEALD 576
Query: 1946 MFGIDKDAIARAVR 1987
GI I AV+
Sbjct: 577 FSGISSRHIIVAVK 590
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 72,721,422
Number of extensions: 2037555
Number of successful extensions: 10539
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10376
Number of HSP's successfully gapped: 4
Length of query: 707
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 599
Effective length of database: 12,373,671
Effective search space: 7411828929
Effective search space used: 7411828929
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012445
(2122 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001128527.1| transketolase [Homo sapiens]. 1135 0.0
Alignment gi|NP_001055.1| transketolase [Homo sapiens]. 1135 0.0
Alignment gi|NP_115512.3| transketolase-like protein 2 [Homo sapiens]. 810 0.0
Alignment gi|NP_036385.3| transketolase-like protein 1 isoform a [Homo sa... 696 0.0
Alignment gi|NP_001139405.1| transketolase-like protein 1 isoform b [Homo... 677 0.0
Alignment gi|NP_001139406.1| transketolase-like protein 1 isoform c [Homo... 646 0.0
>ref|NP_001128527.1| transketolase [Homo sapiens].
Length = 623
Score = 1135 bits (2936), Expect = 0.0
Identities = 565/623 (90%), Positives = 585/623 (93%)
Frame = +2
Query: 137 MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 316
ME+YHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYK+
Sbjct: 1 MESYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKS 60
Query: 317 QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 496
QDPRNPHNDRFVLSKGHAAPILY+VWAEAGFL EAELLNLRKISSDLDGHPVPKQAFTDV
Sbjct: 61 QDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDV 120
Query: 497 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 676
ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEG+VWEAMAFA IYKLDNLVA
Sbjct: 121 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVA 180
Query: 677 ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQVKNQPTAIIA 856
ILDINRLGQSDPAPLQHQMD+YQKRCEAFGWHAIIVDGHSVEELCKAFGQ K+QPTAIIA
Sbjct: 181 ILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKHQPTAIIA 240
Query: 857 KTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 1036
KTFKGRGITGVEDKESWHGKPLP+NMA+Q+IQEIYSQIQ+KKKILATPPQEDAPSVDI N
Sbjct: 241 KTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIAN 300
Query: 1037 IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 1216
IRMP+ PSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSE+FKKEHPDRFI
Sbjct: 301 IRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFI 360
Query: 1217 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 1396
ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS
Sbjct: 361 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 420
Query: 1397 IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 1576
IGEDGPSQMALEDLAMFRSVP STVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII
Sbjct: 421 IGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 480
Query: 1577 YNNNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPL 1756
YNNNEDFQ+GQAKVVLKSKDDQVTVIGAGVT INIRVLDPFT+KPL
Sbjct: 481 YNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPL 540
Query: 1757 DRKLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAE 1936
DRKLILDSARATKGRILTVEDHYY P +TVT LAV++VPRSGKPAE
Sbjct: 541 DRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNRVPRSGKPAE 600
Query: 1937 LLKMFGIDKDAIARAVRGLVTKA 2005
LLKMFGID+DAIA+AVRGL+TKA
Sbjct: 601 LLKMFGIDRDAIAQAVRGLITKA 623
>ref|NP_001055.1| transketolase [Homo sapiens].
Length = 623
Score = 1135 bits (2936), Expect = 0.0
Identities = 565/623 (90%), Positives = 585/623 (93%)
Frame = +2
Query: 137 MEAYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKA 316
ME+YHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYK+
Sbjct: 1 MESYHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKS 60
Query: 317 QDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDV 496
QDPRNPHNDRFVLSKGHAAPILY+VWAEAGFL EAELLNLRKISSDLDGHPVPKQAFTDV
Sbjct: 61 QDPRNPHNDRFVLSKGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDV 120
Query: 497 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVA 676
ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEG+VWEAMAFA IYKLDNLVA
Sbjct: 121 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVA 180
Query: 677 ILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAFGQVKNQPTAIIA 856
ILDINRLGQSDPAPLQHQMD+YQKRCEAFGWHAIIVDGHSVEELCKAFGQ K+QPTAIIA
Sbjct: 181 ILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKHQPTAIIA 240
Query: 857 KTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITN 1036
KTFKGRGITGVEDKESWHGKPLP+NMA+Q+IQEIYSQIQ+KKKILATPPQEDAPSVDI N
Sbjct: 241 KTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIAN 300
Query: 1037 IRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFI 1216
IRMP+ PSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSE+FKKEHPDRFI
Sbjct: 301 IRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFI 360
Query: 1217 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 1396
ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS
Sbjct: 361 ECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVS 420
Query: 1397 IGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 1576
IGEDGPSQMALEDLAMFRSVP STVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII
Sbjct: 421 IGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAII 480
Query: 1577 YNNNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPL 1756
YNNNEDFQ+GQAKVVLKSKDDQVTVIGAGVT INIRVLDPFT+KPL
Sbjct: 481 YNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPL 540
Query: 1757 DRKLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAE 1936
DRKLILDSARATKGRILTVEDHYY P +TVT LAV++VPRSGKPAE
Sbjct: 541 DRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNRVPRSGKPAE 600
Query: 1937 LLKMFGIDKDAIARAVRGLVTKA 2005
LLKMFGID+DAIA+AVRGL+TKA
Sbjct: 601 LLKMFGIDRDAIAQAVRGLITKA 623
>ref|NP_115512.3| transketolase-like protein 2 [Homo sapiens].
Length = 626
Score = 810 bits (2093), Expect = 0.0
Identities = 393/614 (64%), Positives = 476/614 (77%), Gaps = 3/614 (0%)
Frame = +2
Query: 152 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 331
KPD + +Q L+DTANRLRI SI+AT A+GSG TSCCSAAE+++VLFFHTM+YK DP +
Sbjct: 7 KPDVKTVQVLRDTANRLRIHSIRATCASGSGQLTSCCSAAEVVSVLFFHTMKYKQTDPEH 66
Query: 332 PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 511
P NDRF+LS+GHAAPILY+ W E G + E++LLNLRK+ SDL+ HP P+ F DVATGSL
Sbjct: 67 PDNDRFILSRGHAAPILYAAWVEVGDISESDLLNLRKLHSDLERHPTPRLPFVDVATGSL 126
Query: 512 GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 691
GQGLG ACGMAYTGKY DKASYRV+CL+GDGE SEG+VWEA AFA Y LDNLVA+ D+N
Sbjct: 127 GQGLGTACGMAYTGKYLDKASYRVFCLMGDGESSEGSVWEAFAFASHYNLDNLVAVFDVN 186
Query: 692 RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAF---GQVKNQPTAIIAKT 862
RLGQS PAPL+H D+YQ CEAFGW+ +VDGH VE LC+AF QVKN+PTAI+AKT
Sbjct: 187 RLGQSGPAPLEHGADIYQNCCEAFGWNTYLVDGHDVEALCQAFWQASQVKNKPTAIVAKT 246
Query: 863 FKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIR 1042
FKGRGI +ED E+WHGKP+P+ AD +++ I SQIQ + ++ P ED+P + IT+I+
Sbjct: 247 FKGRGIPNIEDAENWHGKPVPKERADAIVKLIESQIQTNENLIPKSPVEDSPQISITDIK 306
Query: 1043 MPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIEC 1222
M +PP+YKVGDKIAT+K YG ALAKLG A++R+I L GDT NSTFSE+F+KEHP+RFIEC
Sbjct: 307 MTSPPAYKVGDKIATQKTYGLALAKLGRANERVIVLSGDTMNSTFSEIFRKEHPERFIEC 366
Query: 1223 YIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIG 1402
IAEQNMVS+A+GCATR RT+ F FAAFFTRAFDQ+RM AIS++NINL GSHCGVS G
Sbjct: 367 IIAEQNMVSVALGCATRGRTIAFAGAFAAFFTRAFDQLRMGAISQANINLIGSHCGVSTG 426
Query: 1403 EDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYN 1582
EDG SQMALEDLAMFRS+P TVFYPSD ++TE A+ LAANTKG+CFIRTS+PE A+IY
Sbjct: 427 EDGVSQMALEDLAMFRSIPNCTVFYPSDAISTEHAIYLAANTKGMCFIRTSQPETAVIYT 486
Query: 1583 NNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDR 1762
E+F+IGQAKVV +D+VTVIGAGVT I++RV+DPFT+KPLD
Sbjct: 487 PQENFEIGQAKVVRHGVNDKVTVIGAGVTLHEALEAADHLSQQGISVRVIDPFTIKPLDA 546
Query: 1763 KLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELL 1942
I+ SA+AT GR++TVEDHY PD+ V +LAVS VP+ GK +ELL
Sbjct: 547 ATIISSAKATGGRVITVEDHYREGGIGEAVCAAVSREPDILVHQLAVSGVPQRGKTSELL 606
Query: 1943 KMFGIDKDAIARAV 1984
MFGI I AV
Sbjct: 607 DMFGISTRHIIAAV 620
>ref|NP_036385.3| transketolase-like protein 1 isoform a [Homo sapiens].
Length = 596
Score = 696 bits (1795), Expect = 0.0
Identities = 349/615 (56%), Positives = 436/615 (70%), Gaps = 3/615 (0%)
Frame = +2
Query: 152 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 331
+PD+ LQ L+D A+RLRI SI+AT + SGHPTSC S++EIM+VLFF+ MRYK DP N
Sbjct: 15 RPDRGTLQVLQDMASRLRIHSIRATCSTSSGHPTSCSSSSEIMSVLFFYIMRYKQSDPEN 74
Query: 332 PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 511
P NDRFVL+K + +F DVATG L
Sbjct: 75 PDNDRFVLAK--------------------------------------RLSFVDVATGWL 96
Query: 512 GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 691
GQGLG ACGMAYTGKYFD+ASYRV+CL+ DGE SEG+VWEAMAFA Y LDNLVAI D+N
Sbjct: 97 GQGLGVACGMAYTGKYFDRASYRVFCLMSDGESSEGSVWEAMAFASYYSLDNLVAIFDVN 156
Query: 692 RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAF---GQVKNQPTAIIAKT 862
RLG S P +H +++YQ+RCEAFGW+ +VDG VE LC+ F QVK++PTA++AKT
Sbjct: 157 RLGHSGALPAEHCINIYQRRCEAFGWNTYVVDGRDVEALCQVFWQASQVKHKPTAVVAKT 216
Query: 863 FKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIR 1042
FKGRG +ED ESWH KP+P+ AD +I+ I SQIQ + + PP ED+P V+IT++R
Sbjct: 217 FKGRGTPSIEDAESWHAKPMPRERADAIIKLIESQIQTSRNLDPQPPIEDSPEVNITDVR 276
Query: 1043 MPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIEC 1222
M +PP Y+VGDKIATRKA G ALAKLG+A++R++ LDGDT+ STFSE+F KE+P+RFIEC
Sbjct: 277 MTSPPDYRVGDKIATRKACGLALAKLGYANNRVVVLDGDTRYSTFSEIFNKEYPERFIEC 336
Query: 1223 YIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIG 1402
++AEQNMVS+A+GCA+R RT+ F STFAAF TRAFD IR+ ++ESNIN+ GSHCGVS+G
Sbjct: 337 FMAEQNMVSVALGCASRGRTIAFASTFAAFLTRAFDHIRIGGLAESNINIIGSHCGVSVG 396
Query: 1403 EDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYN 1582
+DG SQMALED+AMFR++P T+FYP+D V+TE AV LAAN KG+CFIRT+RPE +IY
Sbjct: 397 DDGASQMALEDIAMFRTIPKCTIFYPTDAVSTEHAVALAANAKGMCFIRTTRPETMVIYT 456
Query: 1583 NNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDR 1762
E F+IGQAKV+ D+VTVIGAG+T I IRV+D FT+KPLD
Sbjct: 457 PQERFEIGQAKVLRHCVSDKVTVIGAGITVYEALAAADELSKQDIFIRVIDLFTIKPLDV 516
Query: 1763 KLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELL 1942
I+ SA+AT+GRI+TVEDHY PD+ V LAVS VP+SGK ELL
Sbjct: 517 ATIVSSAKATEGRIITVEDHYPQGGIGEAVCAAVSMDPDIQVHSLAVSGVPQSGKSEELL 576
Query: 1943 KMFGIDKDAIARAVR 1987
M+GI I AV+
Sbjct: 577 DMYGISARHIIVAVK 591
>ref|NP_001139405.1| transketolase-like protein 1 isoform b [Homo sapiens].
Length = 590
Score = 677 bits (1746), Expect = 0.0
Identities = 344/615 (55%), Positives = 431/615 (70%), Gaps = 3/615 (0%)
Frame = +2
Query: 152 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKAQDPRN 331
+PD+ LQ L+D A+RLRI SI+AT + SG S++EIM+VLFF+ MRYK DP N
Sbjct: 15 RPDRGTLQVLQDMASRLRIHSIRATCSTSSG------SSSEIMSVLFFYIMRYKQSDPEN 68
Query: 332 PHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSL 511
P NDRFVL+K + +F DVATG L
Sbjct: 69 PDNDRFVLAK--------------------------------------RLSFVDVATGWL 90
Query: 512 GQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAMAFAGIYKLDNLVAILDIN 691
GQGLG ACGMAYTGKYFD+ASYRV+CL+ DGE SEG+VWEAMAFA Y LDNLVAI D+N
Sbjct: 91 GQGLGVACGMAYTGKYFDRASYRVFCLMSDGESSEGSVWEAMAFASYYSLDNLVAIFDVN 150
Query: 692 RLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKAF---GQVKNQPTAIIAKT 862
RLG S P +H +++YQ+RCEAFGW+ +VDG VE LC+ F QVK++PTA++AKT
Sbjct: 151 RLGHSGALPAEHCINIYQRRCEAFGWNTYVVDGRDVEALCQVFWQASQVKHKPTAVVAKT 210
Query: 863 FKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKILATPPQEDAPSVDITNIR 1042
FKGRG +ED ESWH KP+P+ AD +I+ I SQIQ + + PP ED+P V+IT++R
Sbjct: 211 FKGRGTPSIEDAESWHAKPMPRERADAIIKLIESQIQTSRNLDPQPPIEDSPEVNITDVR 270
Query: 1043 MPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSELFKKEHPDRFIEC 1222
M +PP Y+VGDKIATRKA G ALAKLG+A++R++ LDGDT+ STFSE+F KE+P+RFIEC
Sbjct: 271 MTSPPDYRVGDKIATRKACGLALAKLGYANNRVVVLDGDTRYSTFSEIFNKEYPERFIEC 330
Query: 1223 YIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIG 1402
++AEQNMVS+A+GCA+R RT+ F STFAAF TRAFD IR+ ++ESNIN+ GSHCGVS+G
Sbjct: 331 FMAEQNMVSVALGCASRGRTIAFASTFAAFLTRAFDHIRIGGLAESNINIIGSHCGVSVG 390
Query: 1403 EDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYN 1582
+DG SQMALED+AMFR++P T+FYP+D V+TE AV LAAN KG+CFIRT+RPE +IY
Sbjct: 391 DDGASQMALEDIAMFRTIPKCTIFYPTDAVSTEHAVALAANAKGMCFIRTTRPETMVIYT 450
Query: 1583 NNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXXXXINIRVLDPFTVKPLDR 1762
E F+IGQAKV+ D+VTVIGAG+T I IRV+D FT+KPLD
Sbjct: 451 PQERFEIGQAKVLRHCVSDKVTVIGAGITVYEALAAADELSKQDIFIRVIDLFTIKPLDV 510
Query: 1763 KLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTVTRLAVSQVPRSGKPAELL 1942
I+ SA+AT+GRI+TVEDHY PD+ V LAVS VP+SGK ELL
Sbjct: 511 ATIVSSAKATEGRIITVEDHYPQGGIGEAVCAAVSMDPDIQVHSLAVSGVPQSGKSEELL 570
Query: 1943 KMFGIDKDAIARAVR 1987
M+GI I AV+
Sbjct: 571 DMYGISARHIIVAVK 585
>ref|NP_001139406.1| transketolase-like protein 1 isoform c [Homo sapiens].
Length = 540
Score = 646 bits (1666), Expect = 0.0
Identities = 324/573 (56%), Positives = 403/573 (70%), Gaps = 3/573 (0%)
Frame = +2
Query: 278 MAVLFFHTMRYKAQDPRNPHNDRFVLSKGHAAPILYSVWAEAGFLPEAELLNLRKISSDL 457
M+VLFF+ MRYK DP NP NDRFVL+K
Sbjct: 1 MSVLFFYIMRYKQSDPENPDNDRFVLAK-------------------------------- 28
Query: 458 DGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGAVWEAM 637
+ +F DVATG LGQGLG ACGMAYTGKYFD+ASYRV+CL+ DGE SEG+VWEAM
Sbjct: 29 ------RLSFVDVATGWLGQGLGVACGMAYTGKYFDRASYRVFCLMSDGESSEGSVWEAM 82
Query: 638 AFAGIYKLDNLVAILDINRLGQSDPAPLQHQMDVYQKRCEAFGWHAIIVDGHSVEELCKA 817
AFA Y LDNLVAI D+NRLG S P +H +++YQ+RCEAFGW+ +VDG VE LC+
Sbjct: 83 AFASYYSLDNLVAIFDVNRLGHSGALPAEHCINIYQRRCEAFGWNTYVVDGRDVEALCQV 142
Query: 818 F---GQVKNQPTAIIAKTFKGRGITGVEDKESWHGKPLPQNMADQVIQEIYSQIQNKKKI 988
F QVK++PTA++AKTFKGRG +ED ESWH KP+P+ AD +I+ I SQIQ + +
Sbjct: 143 FWQASQVKHKPTAVVAKTFKGRGTPSIEDAESWHAKPMPRERADAIIKLIESQIQTSRNL 202
Query: 989 LATPPQEDAPSVDITNIRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKN 1168
PP ED+P V+IT++RM +PP Y+VGDKIATRKA G ALAKLG+A++R++ LDGDT+
Sbjct: 203 DPQPPIEDSPEVNITDVRMTSPPDYRVGDKIATRKACGLALAKLGYANNRVVVLDGDTRY 262
Query: 1169 STFSELFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAA 1348
STFSE+F KE+P+RFIEC++AEQNMVS+A+GCA+R RT+ F STFAAF TRAFD IR+
Sbjct: 263 STFSEIFNKEYPERFIECFMAEQNMVSVALGCASRGRTIAFASTFAAFLTRAFDHIRIGG 322
Query: 1349 ISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVATEKAVELAANT 1528
++ESNIN+ GSHCGVS+G+DG SQMALED+AMFR++P T+FYP+D V+TE AV LAAN
Sbjct: 323 LAESNINIIGSHCGVSVGDDGASQMALEDIAMFRTIPKCTIFYPTDAVSTEHAVALAANA 382
Query: 1529 KGICFIRTSRPENAIIYNNNEDFQIGQAKVVLKSKDDQVTVIGAGVTXXXXXXXXXXXXX 1708
KG+CFIRT+RPE +IY E F+IGQAKV+ D+VTVIGAG+T
Sbjct: 383 KGMCFIRTTRPETMVIYTPQERFEIGQAKVLRHCVSDKVTVIGAGITVYEALAAADELSK 442
Query: 1709 XXINIRVLDPFTVKPLDRKLILDSARATKGRILTVEDHYYXXXXXXXXXXXXXXXPDVTV 1888
I IRV+D FT+KPLD I+ SA+AT+GRI+TVEDHY PD+ V
Sbjct: 443 QDIFIRVIDLFTIKPLDVATIVSSAKATEGRIITVEDHYPQGGIGEAVCAAVSMDPDIQV 502
Query: 1889 TRLAVSQVPRSGKPAELLKMFGIDKDAIARAVR 1987
LAVS VP+SGK ELL M+GI I AV+
Sbjct: 503 HSLAVSGVPQSGKSEELLDMYGISARHIIVAVK 535
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 86,314,533
Number of extensions: 2463304
Number of successful extensions: 12302
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 12129
Number of HSP's successfully gapped: 9
Length of query: 707
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 597
Effective length of database: 14,671,124
Effective search space: 8758661028
Effective search space used: 8758661028
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012445
(2122 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 519 e-144
gb|GL896526.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 68 2e-08
>Sscrofa_Chr13
|| Length = 218635234
Score = 519 bits (262), Expect = e-144
Identities = 265/266 (99%)
Strand = Plus / Minus
Query: 1831 aggtggcctaggtgaggcagtggctgctgcagtggtgggtgagcctgacgtcactgtcac 1890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38418704 aggtggcctaggtgaggcagtggctgctgcagtggtgggtgagcctgacgtcactgtcac 38418645
Query: 1891 ccgcctggctgtcagccaagtgccaagaagcgggaagcccgcggagctgctgaagatgtt 1950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38418644 ccgcctggctgtcagccaagtgccaagaagcgggaagcccgcggagctgctgaagatgtt 38418585
Query: 1951 cggcatcgacaaggacgccatcgcgcgagccgtgcggggcctggtcaccaaggcctaggg 2010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38418584 cggcatcgacaaggacgccatcgcgcgagccgtgcggggcctggtcaccaaggcctaggg 38418525
Query: 2011 agggctcggggtgcagcgtgggagttctccacattcctgggtgtgtgcagagatatactg 2070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38418524 agggctcggggtgcagcgtgggagttctccacattcctgggtgtgtgcagagatatactg 38418465
Query: 2071 aggggactgccaaatagatgttttga 2096
|||||||||||||||| |||||||||
Sbjct: 38418464 aggggactgccaaataaatgttttga 38418439
Score = 474 bits (239), Expect = e-130
Identities = 242/243 (99%)
Strand = Plus / Minus
Query: 1 tctcaggagtcttaacgcgctcgcgctcagagcccgggctcggcctctgtctgtagctgc 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 38447163 tctcaggagtcttaacgcgctcgcgctcagagcccgggctcggcctcagtctgtagctgc 38447104
Query: 61 aggaatcgcttccctgcgctgcgtctccgcatccgcgtcttcggcctccccacctgcccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38447103 aggaatcgcttccctgcgctgcgtctccgcatccgcgtcttcggcctccccacctgcccg 38447044
Query: 121 cttgcccggctgcgccatggaggcctaccataagcctgaccagcagaagctgcaggccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38447043 cttgcccggctgcgccatggaggcctaccataagcctgaccagcagaagctgcaggccct 38446984
Query: 181 gaaggacacggccaaccgcctgcgcatcagctccatccaggccaccactgcggccggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38446983 gaaggacacggccaaccgcctgcgcatcagctccatccaggccaccactgcggccggctc 38446924
Query: 241 cgg 243
|||
Sbjct: 38446923 cgg 38446921
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Minus
Query: 880 cacaggagtagaagataaggagtcttggcatgggaagcccctcccccagaacatggctga 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38423791 cacaggagtagaagataaggagtcttggcatgggaagcccctcccccagaacatggctga 38423732
Query: 940 tcaggtcatccaggaaatctacagccagatccagaacaaaaagaagatcctggccactcc 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38423731 tcaggtcatccaggaaatctacagccagatccagaacaaaaagaagatcctggccactcc 38423672
Query: 1000 accgcaggaagacgccccctcagtggacatcaccaacatccgaatgcccacgccacccag 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38423671 accgcaggaagacgccccctcagtggacatcaccaacatccgaatgcccacgccacccag 38423612
Query: 1060 ctacaaagttggggacaag 1078
|||||||||||||||||||
Sbjct: 38423611 ctacaaagttggggacaag 38423593
Score = 387 bits (195), Expect = e-104
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 571 cagctaccgcgtctattgcttgctgggagacggggagctgtcagagggcgccgtgtggga 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38427045 cagctaccgcgtctattgcttgctgggagacggggagctgtcagagggcgccgtgtggga 38426986
Query: 631 ggctatggccttcgcgggcatctacaagctggacaaccttgtcgccattcttgacatcaa 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38426985 ggctatggccttcgcgggcatctacaagctggacaaccttgtcgccattcttgacatcaa 38426926
Query: 691 ccgcctgggccagagcgaccccgccccgctgcagcaccagatggatgtctaccagaagcg 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38426925 ccgcctgggccagagcgaccccgccccgctgcagcaccagatggatgtctaccagaagcg 38426866
Query: 751 ctgcgaggcctttgg 765
|||||||||||||||
Sbjct: 38426865 ctgcgaggcctttgg 38426851
Score = 337 bits (170), Expect = 1e-89
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 1077 agatagctacccgcaaggcctacgggcaggccctggccaagctgggccacgccagtgacc 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38422899 agatagctacccgcaaggcctacgggcaggccctggccaagctgggccacgccagtgacc 38422840
Query: 1137 gcatcattgccctggacggggacaccaagaattccaccttctcagagctcttcaaaaagg 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38422839 gcatcattgccctggacggggacaccaagaattccaccttctcagagctcttcaaaaagg 38422780
Query: 1197 agcacccagaccgcttcattgagtgctacatcgccgagcagaacatggtg 1246
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38422779 agcacccagaccgcttcattgagtgctacatcgccgagcagaacatggtg 38422730
Score = 315 bits (159), Expect = 5e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 1243 ggtgagcatcgccgtgggctgcgccacacgcaacaggacagtgcccttctgcagcacgtt 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38421722 ggtgagcatcgccgtgggctgcgccacacgcaacaggacagtgcccttctgcagcacgtt 38421663
Query: 1303 cgcggccttcttcacacgggccttcgaccagatccgcatggcggccatctccgagagcaa 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38421662 cgcggccttcttcacacgggccttcgaccagatccgcatggcggccatctccgagagcaa 38421603
Query: 1363 catcaacctctgcggctcccactgtggcgtgtccatcgg 1401
|||||||||||||||||||||||||||||||||||||||
Sbjct: 38421602 catcaacctctgcggctcccactgtggcgtgtccatcgg 38421564
Score = 264 bits (133), Expect = 2e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 1400 ggggaagatgggccctcccagatggccctggaagacctggccatgtttcggtctgtcccc 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38421427 ggggaagatgggccctcccagatggccctggaagacctggccatgtttcggtctgtcccc 38421368
Query: 1460 atgtcaactgtcttttacccaagcgatggtgtggctacagagaaggcagtggaattagca 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38421367 atgtcaactgtcttttacccaagcgatggtgtggctacagagaaggcagtggaattagca 38421308
Query: 1520 gccaatacaaagg 1532
|||||||||||||
Sbjct: 38421307 gccaatacaaagg 38421295
Score = 254 bits (128), Expect = 2e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 1708 agagaagatcaacatccgtgtgttggaccctttcaccgtcaagcccctggacaggaagct 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38419461 agagaagatcaacatccgtgtgttggaccctttcaccgtcaagcccctggacaggaagct 38419402
Query: 1768 cattctcgacagtgcccgtgctaccaagggcaggatcctcaccgtggaggaccactacta 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38419401 cattctcgacagtgcccgtgctaccaagggcaggatcctcaccgtggaggaccactacta 38419342
Query: 1828 cgaaggtg 1835
||||||||
Sbjct: 38419341 cgaaggtg 38419334
Score = 240 bits (121), Expect = 3e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 765 gctggcacgccatcatcgtggacggacacagtgtggaggagctgtgcaaggccttcgggc 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38425095 gctggcacgccatcatcgtggacggacacagtgtggaggagctgtgcaaggccttcgggc 38425036
Query: 825 aggtcaagaaccagccgacagccatcatcgccaagaccttcaagggccgaggcatcacag 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38425035 aggtcaagaaccagccgacagccatcatcgccaagaccttcaagggccgaggcatcacag 38424976
Query: 885 g 885
|
Sbjct: 38424975 g 38424975
Score = 238 bits (120), Expect = 1e-59
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 243 gccacccaacgtcatgctgcagtgctgccgagatcatggctgtcctctttttccacacca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38432693 gccacccaacgtcatgctgcagtgctgccgagatcatggctgtcctctttttccacacca 38432634
Query: 303 tgcgctacaaggcccaggatccccggaaccctcacaatgaccgctttgtgctctccaagg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38432633 tgcgctacaaggcccaggatccccggaaccctcacaatgaccgctttgtgctctccaagg 38432574
Score = 230 bits (116), Expect = 3e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 360 agggccacgcagcacctatcctgtattccgtgtgggctgaagccggcttcctgccagagg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38431813 agggccacgcagcacctatcctgtattccgtgtgggctgaagccggcttcctgccagagg 38431754
Query: 420 cagagctgctgaacctgaggaagatcagctctgacctggatgggcaccctgtcccg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38431753 cagagctgctgaacctgaggaagatcagctctgacctggatgggcaccctgtcccg 38431698
Score = 196 bits (99), Expect = 4e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 475 gaaacaagctttcactgatgtggccaccggatccctgggccagggccttggggccgcttg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38430778 gaaacaagctttcactgatgtggccaccggatccctgggccagggccttggggccgcttg 38430719
Query: 535 tgggatggcctacacaggcaaatacttcgacaaagccag 573
|||||||||||||||||||||||||||||||||||||||
Sbjct: 38430718 tgggatggcctacacaggcaaatacttcgacaaagccag 38430680
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 1614 aggtggtcctgaagagcaaagatgaccaggtgaccgtgatcggggctggggtgaccctgc 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38420528 aggtggtcctgaagagcaaagatgaccaggtgaccgtgatcggggctggggtgaccctgc 38420469
Query: 1674 atgaggccttggccgctgctgacctgctcaagaaag 1709
||||||||||||||||||||||||||||||||||||
Sbjct: 38420468 atgaggccttggccgctgctgacctgctcaagaaag 38420433
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 1530 agggtatctgctttatccggaccagccgcccagaaaacgccatcatctataacaacaacg 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38420720 agggtatctgctttatccggaccagccgcccagaaaacgccatcatctataacaacaacg 38420661
Query: 1590 aagatttccaaattggacaagccaaggt 1617
||||||||||||||||||||||||||||
Sbjct: 38420660 aagatttccaaattggacaagccaaggt 38420633
>gb|GL896526.1| Sus scrofa unplaced genomic scaffold chrU_scaffold858
Length = 41256
Score = 67.9 bits (34), Expect = 2e-08
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 1148 ctggacggggacaccaagaattccaccttctcagagctcttcaaaaaggagcacccagac 1207
||||| || ||||||||||||||||||||||| ||| | ||||| ||||| |||| ||
Sbjct: 12489 ctggatggtgacaccaagaattccaccttctctgagatattcaagaaggaataccctgag 12430
Query: 1208 cgcttcattgagtgctacatcgccgagcagaacatggt 1245
|||||||| ||||||| || || ||||| ||||||||
Sbjct: 12429 cgcttcatcgagtgctttattgctgagcaaaacatggt 12392
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 51,943,397
Number of extensions: 279
Number of successful extensions: 279
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 15
Length of query: 2122
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2100
Effective length of database: 2,808,408,574
Effective search space: 5897658005400
Effective search space used: 5897658005400
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)