Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012449
(1216 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039374.1| serine carboxypeptidase 1 precursor protein ... 612 e-175
Alignment gi|XP_614314.5| PREDICTED: serine carboxypeptidase vitellogenic... 112 5e-25
Alignment gi|XP_002707121.1| PREDICTED: serine carboxypeptidase 1 precurs... 105 8e-23
Alignment gi|XP_002686918.1| PREDICTED: Carboxypeptidase, vitellogenic-li... 104 1e-22
>ref|NP_001039374.1| serine carboxypeptidase 1 precursor protein [Bos taurus].
Length = 448
Score = 612 bits (1579), Expect = e-175
Identities = 299/384 (77%), Positives = 333/384 (86%)
Frame = +3
Query: 63 MELAQRSCPVPXXXXXXXXSTGAVLNWSTEEGKEAWDYVTVRKDAHMFWWLYYATNPCKN 242
MELA R+CPVP STGAV++ E+ KE W YVTVRKDAHMFWWLYYAT+ KN
Sbjct: 1 MELAPRNCPVPLLLLLLGLSTGAVISQPPEDSKEVWGYVTVRKDAHMFWWLYYATSSHKN 60
Query: 243 FTELPLVMWLQXXXXXXXXXXXNFEEIGPLDSDLKPRRTTWLQAASLLFVDNPVGTGFSY 422
F+ELPL+MWLQ NFEEIGPLD +L+PR TTWLQ+ASLLFVDNPVG GFSY
Sbjct: 61 FSELPLIMWLQGGPGGSSTGFGNFEEIGPLDRNLQPRNTTWLQSASLLFVDNPVGAGFSY 120
Query: 423 VNRSNAYAKDLATVASDMMVLLKTFFDRHKEFQTIPFYIFSESYGGKMAAGIALELHKAI 602
VN+++AYA+DLATV SDM+ LLK+FFD HKEF+ IPFYIFSESYGGKMAAGIALEL+KA+
Sbjct: 121 VNKTDAYARDLATVVSDMIFLLKSFFDFHKEFERIPFYIFSESYGGKMAAGIALELYKAV 180
Query: 603 QQGTIQCNFAGVALGDSWISPLDSVVSWGPYLYSMSLLDDQGLAEVSQVAEQVLDAINKG 782
QQ TIQCNFAGVALGD+WISP+DSV+SWGPYLYS+SLLDDQGLAEVS VAE+VLDA++K
Sbjct: 181 QQKTIQCNFAGVALGDAWISPIDSVLSWGPYLYSVSLLDDQGLAEVSNVAEEVLDALSKE 240
Query: 783 LYREATDLWGKAEMVVEQNTDGVNFYNILTKSSPMSAVESSLEFTQSHLVRLFQRHVRHL 962
LY+EAT LW KAEMV+EQNTDGVNFYNILTKSS +S V S+LEFTQ HLV LFQRHVR L
Sbjct: 241 LYQEATRLWEKAEMVIEQNTDGVNFYNILTKSSSVSRVVSNLEFTQKHLVHLFQRHVRQL 300
Query: 963 QQNALSQLMNGPIRKKLKIIPEDCFWGGQATNVFLNMEGDFMKPVISIVDELLEAGVNVT 1142
QQ+ LSQLMNGPIRKKL+IIPEDC WGGQA VFLNMEGDFMKPVISIVDELLEAGV+VT
Sbjct: 301 QQDPLSQLMNGPIRKKLRIIPEDCIWGGQAPIVFLNMEGDFMKPVISIVDELLEAGVSVT 360
Query: 1143 VYNGQLDLIVDTMGQEAWLRKLKW 1214
VYNGQLDLIVDTMGQE W+RKLKW
Sbjct: 361 VYNGQLDLIVDTMGQENWMRKLKW 384
>ref|XP_614314.5| PREDICTED: serine carboxypeptidase vitellogenic-like [Bos taurus].
Length = 528
Score = 112 bits (281), Expect = 5e-25
Identities = 96/361 (26%), Positives = 156/361 (43%), Gaps = 14/361 (3%)
Frame = +3
Query: 174 YVTVRK--DAHMFWWLYYATNPCKNFTELPLVMWLQXXXXXXXXXXXNFEEIGPL----D 335
Y+TV K ++++F+W + A +N P+V+WLQ F E GP +
Sbjct: 131 YITVNKTYNSNIFFWFFPAKIEPQN---APVVLWLQGGPGGSSMFGL-FVEHGPYIVSKN 186
Query: 336 SDLKPRRTTWLQAASLLFVDNPVGTGFSYVNRSNAYAKDLATVASDMMVLLKTFFDRHKE 515
L R W S+L+VDNPVGTGFS+ + + YA D VA ++ L FF+ +
Sbjct: 187 MTLFARDFPWTITFSMLYVDNPVGTGFSFTDHVHGYAIDEDDVARNLYSALIQFFELFSD 246
Query: 516 FQTIPFYIFSESYGGKMAAGIALELHKAIQQGTIQCNFAGVALGDSWISPLDSVVSWGPY 695
++ FY+ ESY GK IA +H T++ N G+ALGD++ P + + +
Sbjct: 247 YRDNDFYVTGESYAGKYVPAIAHYIHILNPVTTMKINLKGIALGDAYFDPKSIIEGYPSF 306
Query: 696 LYSMSLLDDQGLAEVSQVAEQVLDAINKGLYREATDLWGK-------AEMVVEQNTDGV- 851
L+ + LLD+Q + + I + + +A +L + +E QN G
Sbjct: 307 LFQIGLLDEQEKKYFQKQCNDCVKFIRQEKWLQAFELLDRLLDGGLISEPSYFQNVTGCS 366
Query: 852 NFYNILTKSSPMSAVESSLEFTQSHLVRLFQRHVRHLQQNALSQLMNGPIRKKLKIIPED 1031
N+YN+L + P Q + ++ P ++ +
Sbjct: 367 NYYNLLLCTEPE-------------------------DQGYYGKFLSLPHVRQAIHVGNQ 401
Query: 1032 CFWGGQATNVFLNMEGDFMKPVISIVDELLEAGVNVTVYNGQLDLIVDTMGQEAWLRKLK 1211
F G +L D +K V + E++ V +YNGQLD+IV E L +
Sbjct: 402 TFSDGAKVEKYL--REDTVKSVKPWLTEIMN-NYKVLIYNGQLDVIVAASLTERSLMAMD 458
Query: 1212 W 1214
W
Sbjct: 459 W 459
>ref|XP_002707121.1| PREDICTED: serine carboxypeptidase 1 precursor protein-like,
partial [Bos taurus].
Length = 71
Score = 105 bits (262), Expect = 8e-23
Identities = 47/71 (66%), Positives = 54/71 (76%)
Frame = +3
Query: 63 MELAQRSCPVPXXXXXXXXSTGAVLNWSTEEGKEAWDYVTVRKDAHMFWWLYYATNPCKN 242
MELA R+CPVP STGAV++ E+ KE W YVTVRKDAHMFWWLYYAT+ KN
Sbjct: 1 MELAPRNCPVPLLLLLLGLSTGAVISQPPEDSKEVWGYVTVRKDAHMFWWLYYATSSHKN 60
Query: 243 FTELPLVMWLQ 275
F+ELPL+MWLQ
Sbjct: 61 FSELPLIMWLQ 71
>ref|XP_002686918.1| PREDICTED: Carboxypeptidase, vitellogenic-like [Bos taurus].
Length = 421
Score = 104 bits (260), Expect = 1e-22
Identities = 88/332 (26%), Positives = 140/332 (42%), Gaps = 12/332 (3%)
Frame = +3
Query: 255 PLVMWLQXXXXXXXXXXXNFEEIGPL----DSDLKPRRTTWLQAASLLFVDNPVGTGFSY 422
P+V+WLQ F E GP + L R W S+L+VDNPVGTGFS+
Sbjct: 50 PVVLWLQGGPGGSSMFGL-FVEHGPYIVSKNMTLFARDFPWTITFSMLYVDNPVGTGFSF 108
Query: 423 VNRSNAYAKDLATVASDMMVLLKTFFDRHKEFQTIPFYIFSESYGGKMAAGIALELHKAI 602
+ + YA D VA ++ L FF+ +++ FY+ ESY GK IA +H
Sbjct: 109 TDHVHGYAIDEDDVARNLYSALIQFFELFSDYRDNDFYVTGESYAGKYVPAIAHYIHILN 168
Query: 603 QQGTIQCNFAGVALGDSWISPLDSVVSWGPYLYSMSLLDDQGLAEVSQVAEQVLDAINKG 782
T++ N G+ALGD++ P + + +L+ + LLD+Q + + I +
Sbjct: 169 PVTTMKINLKGIALGDAYFDPKSIIEGYPSFLFQIGLLDEQEKKYFQKQCNDCVKFIRQE 228
Query: 783 LYREATDLWGK-------AEMVVEQNTDGV-NFYNILTKSSPMSAVESSLEFTQSHLVRL 938
+ +A +L + +E QN G N+YN+L + P
Sbjct: 229 KWLQAFELLDRLLDGGLISEPSYFQNVTGCSNYYNLLLCTEPE----------------- 271
Query: 939 FQRHVRHLQQNALSQLMNGPIRKKLKIIPEDCFWGGQATNVFLNMEGDFMKPVISIVDEL 1118
Q + ++ P ++ + F G +L D +K V + E+
Sbjct: 272 --------DQGYYGKFLSLPHVRQAIHVGNQTFSDGAKVEKYL--REDTVKSVKPWLTEI 321
Query: 1119 LEAGVNVTVYNGQLDLIVDTMGQEAWLRKLKW 1214
+ V +YNGQLD+IV E L + W
Sbjct: 322 MN-NYKVLIYNGQLDVIVAASLTERSLMAMDW 352
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,533,227
Number of extensions: 1516997
Number of successful extensions: 5024
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5016
Number of HSP's successfully gapped: 4
Length of query: 405
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 300
Effective length of database: 14,207,134
Effective search space: 4262140200
Effective search space used: 4262140200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012449
(1216 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537688.2| PREDICTED: similar to serine carboxypeptidase 1... 660 0.0
Alignment gi|XP_854245.1| PREDICTED: similar to serine carboxypeptidase v... 105 7e-23
>ref|XP_537688.2| PREDICTED: similar to serine carboxypeptidase 1 precursor protein
[Canis familiaris].
Length = 477
Score = 660 bits (1704), Expect = 0.0
Identities = 321/381 (84%), Positives = 344/381 (90%)
Frame = +3
Query: 72 AQRSCPVPXXXXXXXXSTGAVLNWSTEEGKEAWDYVTVRKDAHMFWWLYYATNPCKNFTE 251
A+ SC TGAV +W EEGKE WDYVTVRKDAHMFWWLYYATNPCKNF+E
Sbjct: 33 ARPSCSGGTSPAERAGDTGAVTDWPAEEGKEVWDYVTVRKDAHMFWWLYYATNPCKNFSE 92
Query: 252 LPLVMWLQXXXXXXXXXXXNFEEIGPLDSDLKPRRTTWLQAASLLFVDNPVGTGFSYVNR 431
LPLVMWLQ NFEEIGPLDSDLKPRRTTWLQ+ASLLFVDNPVGTGFSYVN+
Sbjct: 93 LPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRRTTWLQSASLLFVDNPVGTGFSYVNK 152
Query: 432 SNAYAKDLATVASDMMVLLKTFFDRHKEFQTIPFYIFSESYGGKMAAGIALELHKAIQQG 611
S+AYAKDLATVASDMMVLLKTFFD HKEFQTIPFYIFSESYGGKMAAGI LEL+KAIQQG
Sbjct: 153 SDAYAKDLATVASDMMVLLKTFFDCHKEFQTIPFYIFSESYGGKMAAGIGLELYKAIQQG 212
Query: 612 TIQCNFAGVALGDSWISPLDSVVSWGPYLYSMSLLDDQGLAEVSQVAEQVLDAINKGLYR 791
TIQCNFAGVALGDSWISP+ SV+SWGPYLYS+SLLDDQGLAEVSQVAEQVLDA+NKGLY+
Sbjct: 213 TIQCNFAGVALGDSWISPVHSVLSWGPYLYSVSLLDDQGLAEVSQVAEQVLDAVNKGLYK 272
Query: 792 EATDLWGKAEMVVEQNTDGVNFYNILTKSSPMSAVESSLEFTQSHLVRLFQRHVRHLQQN 971
EAT LWGKAEMV+EQNTDGVNFYNILTKS+P SA++SSLEFTQSHLV L+QRHVRHLQ++
Sbjct: 273 EATQLWGKAEMVIEQNTDGVNFYNILTKSTPTSAMKSSLEFTQSHLVHLYQRHVRHLQRD 332
Query: 972 ALSQLMNGPIRKKLKIIPEDCFWGGQATNVFLNMEGDFMKPVISIVDELLEAGVNVTVYN 1151
ALSQLMNGPIRKKLKIIPEDC WGGQ+TNVF NMEGDFMKP ISIVDELLEAGVNVTVYN
Sbjct: 333 ALSQLMNGPIRKKLKIIPEDCSWGGQSTNVFENMEGDFMKPAISIVDELLEAGVNVTVYN 392
Query: 1152 GQLDLIVDTMGQEAWLRKLKW 1214
GQLDLIVDT+GQEAW+R+LKW
Sbjct: 393 GQLDLIVDTIGQEAWIRRLKW 413
>ref|XP_854245.1| PREDICTED: similar to serine carboxypeptidase vitellogenic-like
[Canis familiaris].
Length = 479
Score = 105 bits (263), Expect = 7e-23
Identities = 94/356 (26%), Positives = 155/356 (43%), Gaps = 9/356 (2%)
Frame = +3
Query: 174 YVTVRK--DAHMFWWLYYA-TNPCKNFTELPLVMWLQXXXXXXXXXXXNFEEIGPL---- 332
Y+TV K ++++F+W + A +P P+V+WLQ F E GP
Sbjct: 80 YITVNKTYNSNLFFWFFPAQVDPAI----APVVLWLQGGPGGSSMFGL-FVEHGPFFVTS 134
Query: 333 DSDLKPRRTTWLQAASLLFVDNPVGTGFSYVNRSNAYAKDLATVASDMMVLLKTFFDRHK 512
+ L+ R W S+L+VDNPVGTGFS+ YA + VA ++ L FF
Sbjct: 135 NMTLRARDFPWTTTLSMLYVDNPVGTGFSFTTSPQGYAVNEDDVARNLYSALVQFFLLFP 194
Query: 513 EFQTIPFYIFSESYGGKMAAGIALELH--KAIQQGTIQCNFAGVALGDSWISPLDSVVSW 686
E++ FY ESY GK +A +H +++ N G+ALGD++ P + +
Sbjct: 195 EYKDNDFYATGESYAGKYVPALAHYIHILNPNPMMSMKINLKGIALGDAYSDPESIIEGY 254
Query: 687 GPYLYSMSLLDDQGLAEVSQVAEQVLDAINKGLYREATDLWGKAEMVVEQNTDGVNFYNI 866
+LY + LLD++ + + + I + + W KA ++++ DG +F N
Sbjct: 255 ATFLYQIGLLDEKQRKYFQKQCDNCVKYIKE-------EKWLKAFEILDRLLDG-DFTNN 306
Query: 867 LTKSSPMSAVESSLEFTQSHLVRLFQRHVRHLQQNALSQLMNGPIRKKLKIIPEDCFWGG 1046
+ ++ S Q + QN ++ P ++ + F G
Sbjct: 307 PSYFQNVTGCPSYYNILQC---------MEAEDQNYYGTFLSLPQVRQAIHVGNQTFSDG 357
Query: 1047 QATNVFLNMEGDFMKPVISIVDELLEAGVNVTVYNGQLDLIVDTMGQEAWLRKLKW 1214
+ M D +K V + E++ V +YNGQLD+IV E L +KW
Sbjct: 358 SEVEKY--MREDTVKTVKPWLAEIMN-NYKVLIYNGQLDIIVAASLTERSLMAMKW 410
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,805,981
Number of extensions: 1560130
Number of successful extensions: 5154
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5151
Number of HSP's successfully gapped: 2
Length of query: 405
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 300
Effective length of database: 15,374,224
Effective search space: 4612267200
Effective search space used: 4612267200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012449
(1216 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358161.1| PREDICTED: retinoid-inducible serine carboxy... 376 e-104
Alignment gi|XP_003131675.2| PREDICTED: retinoid-inducible serine carboxy... 366 e-101
Alignment gi|XP_003134868.2| PREDICTED: probable serine carboxypeptidase ... 91 1e-18
>ref|XP_003358161.1| PREDICTED: retinoid-inducible serine carboxypeptidase-like [Sus
scrofa].
Length = 204
Score = 376 bits (965), Expect = e-104
Identities = 183/202 (90%), Positives = 183/202 (90%)
Frame = +3
Query: 63 MELAQRSCPVPXXXXXXXXSTGAVLNWSTEEGKEAWDYVTVRKDAHMFWWLYYATNPCKN 242
MELAQRSCPVP STGAVLNWSTEEGKEAWDYVTVRKDAHMFWWLYYATNPCKN
Sbjct: 1 MELAQRSCPVPLLLLLLGLSTGAVLNWSTEEGKEAWDYVTVRKDAHMFWWLYYATNPCKN 60
Query: 243 FTELPLVMWLQXXXXXXXXXXXNFEEIGPLDSDLKPRRTTWLQAASLLFVDNPVGTGFSY 422
FTELPLVMWLQ NFEEIGPLDSDLKPRRTTWLQAASLLFVDNPVGTGFSY
Sbjct: 61 FTELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRRTTWLQAASLLFVDNPVGTGFSY 120
Query: 423 VNRSNAYAKDLATVASDMMVLLKTFFDRHKEFQTIPFYIFSESYGGKMAAGIALELHKAI 602
VNRSNAYAKDLATVASDMMVLLKTFFDRHKEFQTIPFYIFSESYGGKMAAGIALELHKAI
Sbjct: 121 VNRSNAYAKDLATVASDMMVLLKTFFDRHKEFQTIPFYIFSESYGGKMAAGIALELHKAI 180
Query: 603 QQGTIQCNFAGVALGDSWISPL 668
QQGTIQCNFAGVALGDSWISPL
Sbjct: 181 QQGTIQCNFAGVALGDSWISPL 202
>ref|XP_003131675.2| PREDICTED: retinoid-inducible serine carboxypeptidase [Sus scrofa].
Length = 404
Score = 366 bits (940), Expect = e-101
Identities = 182/183 (99%), Positives = 183/183 (100%)
Frame = +3
Query: 666 LDSVVSWGPYLYSMSLLDDQGLAEVSQVAEQVLDAINKGLYREATDLWGKAEMVVEQNTD 845
L+SVVSWGPYLYSMSLLDDQGLAEVSQVAEQVLDAINKGLYREATDLWGKAEMVVEQNTD
Sbjct: 151 LNSVVSWGPYLYSMSLLDDQGLAEVSQVAEQVLDAINKGLYREATDLWGKAEMVVEQNTD 210
Query: 846 GVNFYNILTKSSPMSAVESSLEFTQSHLVRLFQRHVRHLQQNALSQLMNGPIRKKLKIIP 1025
GVNFYNILTKSSPMSAVESSLEFTQSHLVRLFQRHVRHLQQNALSQLMNGPIRKKLKIIP
Sbjct: 211 GVNFYNILTKSSPMSAVESSLEFTQSHLVRLFQRHVRHLQQNALSQLMNGPIRKKLKIIP 270
Query: 1026 EDCFWGGQATNVFLNMEGDFMKPVISIVDELLEAGVNVTVYNGQLDLIVDTMGQEAWLRK 1205
EDCFWGGQATNVFLNMEGDFMKPVISIVDELLEAGVNVTVYNGQLDLIVDTMGQEAWLRK
Sbjct: 271 EDCFWGGQATNVFLNMEGDFMKPVISIVDELLEAGVNVTVYNGQLDLIVDTMGQEAWLRK 330
Query: 1206 LKW 1214
LKW
Sbjct: 331 LKW 333
>ref|XP_003134868.2| PREDICTED: probable serine carboxypeptidase CPVL-like, partial [Sus
scrofa].
Length = 284
Score = 91.3 bits (225), Expect = 1e-18
Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 6/181 (3%)
Frame = +3
Query: 174 YVTVRK--DAHMFWWLYYATNPCKNFTELPLVMWLQXXXXXXXXXXXNFEEIGPL----D 335
Y+TV K ++++F+W + A N P+V+WLQ F E GP +
Sbjct: 83 YITVNKTYNSNLFFWFFPAKIDPWN---APVVLWLQGGPGGSSMFGL-FVEHGPYVVRRN 138
Query: 336 SDLKPRRTTWLQAASLLFVDNPVGTGFSYVNRSNAYAKDLATVASDMMVLLKTFFDRHKE 515
+ R W S+L++DNPVGTGFS+ + YA D VA D+ L FF +
Sbjct: 139 MTVLARDFPWTTTFSMLYIDNPVGTGFSFTDHPQGYAVDEDDVARDLYSALIQFFLLFSD 198
Query: 516 FQTIPFYIFSESYGGKMAAGIALELHKAIQQGTIQCNFAGVALGDSWISPLDSVVSWGPY 695
++ FY ESY GK +A +H T++ N G+ALGD++ P +V G +
Sbjct: 199 YKENDFYATGESYAGKYVPALAHYIHALNPAVTLKINLKGIALGDAYFDPESVIVRGGGH 258
Query: 696 L 698
+
Sbjct: 259 I 259
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,205,359
Number of extensions: 972856
Number of successful extensions: 3149
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3148
Number of HSP's successfully gapped: 3
Length of query: 405
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 304
Effective length of database: 8,829,335
Effective search space: 2684117840
Effective search space used: 2684117840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012449
(1216 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083299.3| retinoid-inducible serine carboxypeptidase prec... 610 e-175
Alignment gi|NP_082025.1| probable serine carboxypeptidase CPVL precursor... 104 1e-22
Alignment gi|NP_001033581.1| lysosomal protective protein isoform b [Mus ... 50 4e-06
Alignment gi|NP_032932.2| lysosomal protective protein isoform a [Mus mus... 50 4e-06
>ref|NP_083299.3| retinoid-inducible serine carboxypeptidase precursor [Mus musculus].
Length = 452
Score = 610 bits (1573), Expect = e-175
Identities = 296/388 (76%), Positives = 334/388 (86%), Gaps = 4/388 (1%)
Frame = +3
Query: 63 MELAQRSCPVPXXXXXXXX----STGAVLNWSTEEGKEAWDYVTVRKDAHMFWWLYYATN 230
MEL++R C V S G+ ++W EGKE WDYVTVRKDAHMFWWLYYATN
Sbjct: 1 MELSRRICLVRLWLLLLSFLLGFSAGSAIDWREPEGKEVWDYVTVRKDAHMFWWLYYATN 60
Query: 231 PCKNFTELPLVMWLQXXXXXXXXXXXNFEEIGPLDSDLKPRRTTWLQAASLLFVDNPVGT 410
PCKNF+ELPLVMWLQ NFEEIGPLD+ LKPR TTWLQ ASLLFVDNPVGT
Sbjct: 61 PCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDTQLKPRNTTWLQWASLLFVDNPVGT 120
Query: 411 GFSYVNRSNAYAKDLATVASDMMVLLKTFFDRHKEFQTIPFYIFSESYGGKMAAGIALEL 590
GFSYVN ++AYAKDL TVASDMMVLLK+FFD HKEFQT+PFYIFSESYGGKMAAGI++EL
Sbjct: 121 GFSYVNTTDAYAKDLDTVASDMMVLLKSFFDCHKEFQTVPFYIFSESYGGKMAAGISVEL 180
Query: 591 HKAIQQGTIQCNFAGVALGDSWISPLDSVVSWGPYLYSMSLLDDQGLAEVSQVAEQVLDA 770
+KA+QQGTI+CNF+GVALGDSWISP+DSV+SWGPYLYSMSLLD+QGLAEVS +AEQVLDA
Sbjct: 181 YKAVQQGTIKCNFSGVALGDSWISPVDSVLSWGPYLYSMSLLDNQGLAEVSDIAEQVLDA 240
Query: 771 INKGLYREATDLWGKAEMVVEQNTDGVNFYNILTKSSPMSAVESSLEFTQSHLVRLFQRH 950
+NKG Y+EAT LWGKAEM++E+NTDGVNFYNILTKSSP A+ESSLEF +S LVRL QRH
Sbjct: 241 VNKGFYKEATQLWGKAEMIIEKNTDGVNFYNILTKSSPEKAMESSLEFLRSPLVRLCQRH 300
Query: 951 VRHLQQNALSQLMNGPIRKKLKIIPEDCFWGGQATNVFLNMEGDFMKPVISIVDELLEAG 1130
VRHLQ +ALSQLMNGPI+KKLKIIPED WG QA+ VFL+MEGDFMKP I +VD+LL AG
Sbjct: 301 VRHLQGDALSQLMNGPIKKKLKIIPEDISWGAQASYVFLSMEGDFMKPAIDVVDKLLAAG 360
Query: 1131 VNVTVYNGQLDLIVDTMGQEAWLRKLKW 1214
VNVTVYNGQLDLIVDT+GQE+W++KLKW
Sbjct: 361 VNVTVYNGQLDLIVDTIGQESWVQKLKW 388
>ref|NP_082025.1| probable serine carboxypeptidase CPVL precursor [Mus musculus].
Length = 478
Score = 104 bits (260), Expect = 1e-22
Identities = 88/361 (24%), Positives = 150/361 (41%), Gaps = 14/361 (3%)
Frame = +3
Query: 174 YVTVRK--DAHMFWWLYYATNPCKNFTELPLVMWLQXXXXXXXXXXXNFEEIGPL----D 335
Y+TV + ++++F+W + A + + P+V+WLQ F E GP +
Sbjct: 79 YITVNQTYNSNLFFWFFPARMQPE---DAPVVLWLQGGPGGSSMFGL-FVEHGPYIITSN 134
Query: 336 SDLKPRRTTWLQAASLLFVDNPVGTGFSYVNRSNAYAKDLATVASDMMVLLKTFFDRHKE 515
+ R W S+L++DNPVGTGFS+ + YA VA D+ L FF E
Sbjct: 135 MTVVARDFPWTFTLSMLYIDNPVGTGFSFTDHFQGYATSEDDVAQDLYSALIQFFTLFPE 194
Query: 516 FQTIPFYIFSESYGGKMAAGIALELHKAIQQGTIQCNFAGVALGDSWISPLDSVVSWGPY 695
+ FY+ ESY GK +A +H + G+A+GD++ P + + +
Sbjct: 195 YAKNDFYVTGESYAGKYVPALAHYIHSLNPVRKFKIRLKGIAIGDAYTDPESIIGGYAAF 254
Query: 696 LYSMSLLDDQGLAEVSQVAEQVLDAINKGLYREATDLWGK--------AEMVVEQNTDGV 851
LY + LLD+Q + + + I + + +A ++ K + T
Sbjct: 255 LYEIGLLDEQQQKYFQKQCSKCVKYIKEQEWMKAFEILDKLLDGDVTTGSSFFQNVTGCT 314
Query: 852 NFYNILTKSSPMSAVESSLEFTQSHLVRLFQRHVRHLQQNALSQLMNGPIRKKLKIIPED 1031
N+YNIL + P +Q+ ++ + P ++ +
Sbjct: 315 NYYNILQCTEPK-------------------------EQSYFAKFLTLPQVRQAIHVGNQ 349
Query: 1032 CFWGGQATNVFLNMEGDFMKPVISIVDELLEAGVNVTVYNGQLDLIVDTMGQEAWLRKLK 1211
F G V ++ D +K V + E++ V +YNGQLD+IV E L +
Sbjct: 350 NFSDG--AEVEKHLREDTVKSVKPWLSEIMNY-YKVLIYNGQLDIIVAAALTERSLMAMD 406
Query: 1212 W 1214
W
Sbjct: 407 W 407
>ref|NP_001033581.1| lysosomal protective protein isoform b [Mus musculus].
Length = 474
Score = 50.1 bits (118), Expect = 4e-06
Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 4/167 (2%)
Frame = +3
Query: 174 YVTVRKDAHMFWWLYYATNPCKNFTELPLVMWLQXXXXXXXXXXXNFEE----IGPLDSD 341
Y+ H +W + N KN P+V+WL E I P
Sbjct: 48 YLRASDSKHFHYWFVESQNDPKNS---PVVLWLNGGPGCSSLDGLLTEHGPFLIQPDGVT 104
Query: 342 LKPRRTTWLQAASLLFVDNPVGTGFSYVNRSNAYAKDLATVASDMMVLLKTFFDRHKEFQ 521
L+ W A++L++++P G GFSY + Y + VA + LK FF E++
Sbjct: 105 LEYNPYAWNLIANVLYIESPAGVGFSY-SDDKMYVTNDTEVAENNYEALKDFFRLFPEYK 163
Query: 522 TIPFYIFSESYGGKMAAGIALELHKAIQQGTIQCNFAGVALGDSWIS 662
++ ESY AGI + + N G+A+G+ S
Sbjct: 164 DNKLFLTGESY-----AGIYIPTLAVLVMQDPSMNLQGLAVGNGLAS 205
>ref|NP_032932.2| lysosomal protective protein isoform a [Mus musculus].
Length = 492
Score = 50.1 bits (118), Expect = 4e-06
Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 4/167 (2%)
Frame = +3
Query: 174 YVTVRKDAHMFWWLYYATNPCKNFTELPLVMWLQXXXXXXXXXXXNFEE----IGPLDSD 341
Y+ H +W + N KN P+V+WL E I P
Sbjct: 66 YLRASDSKHFHYWFVESQNDPKNS---PVVLWLNGGPGCSSLDGLLTEHGPFLIQPDGVT 122
Query: 342 LKPRRTTWLQAASLLFVDNPVGTGFSYVNRSNAYAKDLATVASDMMVLLKTFFDRHKEFQ 521
L+ W A++L++++P G GFSY + Y + VA + LK FF E++
Sbjct: 123 LEYNPYAWNLIANVLYIESPAGVGFSY-SDDKMYVTNDTEVAENNYEALKDFFRLFPEYK 181
Query: 522 TIPFYIFSESYGGKMAAGIALELHKAIQQGTIQCNFAGVALGDSWIS 662
++ ESY AGI + + N G+A+G+ S
Sbjct: 182 DNKLFLTGESY-----AGIYIPTLAVLVMQDPSMNLQGLAVGNGLAS 223
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,674,634
Number of extensions: 1291689
Number of successful extensions: 4162
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4160
Number of HSP's successfully gapped: 4
Length of query: 405
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 301
Effective length of database: 12,493,815
Effective search space: 3760638315
Effective search space used: 3760638315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012449
(1216 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067639.1| retinoid-inducible serine carboxypeptidase prec... 646 0.0
Alignment gi|NP_061902.2| probable serine carboxypeptidase CPVL precursor... 110 2e-24
Alignment gi|NP_112601.3| probable serine carboxypeptidase CPVL precursor... 110 2e-24
>ref|NP_067639.1| retinoid-inducible serine carboxypeptidase precursor [Homo sapiens].
Length = 452
Score = 646 bits (1666), Expect = 0.0
Identities = 318/388 (81%), Positives = 345/388 (88%), Gaps = 4/388 (1%)
Frame = +3
Query: 63 MELAQRSCPVPXXXXXXXX----STGAVLNWSTEEGKEAWDYVTVRKDAHMFWWLYYATN 230
MELA R PVP + GAV++W TEEGKE WDYVTVRKDA+MFWWLYYATN
Sbjct: 1 MELALRRSPVPRWLLLLPLLLGLNAGAVIDWPTEEGKEVWDYVTVRKDAYMFWWLYYATN 60
Query: 231 PCKNFTELPLVMWLQXXXXXXXXXXXNFEEIGPLDSDLKPRRTTWLQAASLLFVDNPVGT 410
CKNF+ELPLVMWLQ NFEEIGPLDSDLKPR+TTWLQAASLLFVDNPVGT
Sbjct: 61 SCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTTWLQAASLLFVDNPVGT 120
Query: 411 GFSYVNRSNAYAKDLATVASDMMVLLKTFFDRHKEFQTIPFYIFSESYGGKMAAGIALEL 590
GFSYVN S AYAKDLA VASDMMVLLKTFF HKEFQT+PFYIFSESYGGKMAAGI LEL
Sbjct: 121 GFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLEL 180
Query: 591 HKAIQQGTIQCNFAGVALGDSWISPLDSVVSWGPYLYSMSLLDDQGLAEVSQVAEQVLDA 770
+KAIQ+GTI+CNFAGVALGDSWISP+DSV+SWGPYLYSMSLL+D+GLAEVS+VAEQVL+A
Sbjct: 181 YKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNA 240
Query: 771 INKGLYREATDLWGKAEMVVEQNTDGVNFYNILTKSSPMSAVESSLEFTQSHLVRLFQRH 950
+NKGLYREAT+LWGKAEM++EQNTDGVNFYNILTKS+P S +ESSLEFTQSHLV L QRH
Sbjct: 241 VNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKSTPTSTMESSLEFTQSHLVCLCQRH 300
Query: 951 VRHLQQNALSQLMNGPIRKKLKIIPEDCFWGGQATNVFLNMEGDFMKPVISIVDELLEAG 1130
VRHLQ++ALSQLMNGPIRKKLKIIPED WGGQATNVF+NME DFMKPVISIVDELLEAG
Sbjct: 301 VRHLQRDALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDFMKPVISIVDELLEAG 360
Query: 1131 VNVTVYNGQLDLIVDTMGQEAWLRKLKW 1214
+NVTVYNGQLDLIVDTMGQEAW+RKLKW
Sbjct: 361 INVTVYNGQLDLIVDTMGQEAWVRKLKW 388
>ref|NP_061902.2| probable serine carboxypeptidase CPVL precursor [Homo sapiens].
Length = 476
Score = 110 bits (276), Expect = 2e-24
Identities = 95/361 (26%), Positives = 159/361 (44%), Gaps = 14/361 (3%)
Frame = +3
Query: 174 YVTVRK--DAHMFWWLYYATNPCKNFTELPLVMWLQXXXXXXXXXXXNFEEIGPL----D 335
++TV K ++++F+W + A + + P+V+WLQ F E GP +
Sbjct: 77 FLTVNKTYNSNLFFWFFPAQIQPE---DAPVVLWLQGGPGGSSMFGL-FVEHGPYVVTSN 132
Query: 336 SDLKPRRTTWLQAASLLFVDNPVGTGFSYVNRSNAYAKDLATVASDMMVLLKTFFDRHKE 515
L+ R W S+L++DNPVGTGFS+ + ++ YA + VA D+ L FF E
Sbjct: 133 MTLRDRDFPWTTTLSMLYIDNPVGTGFSFTDDTHGYAVNEDDVARDLYSALIQFFQIFPE 192
Query: 516 FQTIPFYIFSESYGGKMAAGIALELHKAIQQGTIQCNFAGVALGDSWISPLDSVVSWGPY 695
++ FY+ ESY GK IA +H ++ N G+A+GD + P + + +
Sbjct: 193 YKNNDFYVTGESYAGKYVPAIAHLIHSLNPVREVKINLNGIAIGDGYSDPESIIGGYAEF 252
Query: 696 LYSMSLLDDQGLAEVSQVAEQVLDAINKGLYREATDLWGK-------AEMVVEQNTDGV- 851
LY + LLD++ + + ++ I K + EA ++ K ++ QN G
Sbjct: 253 LYQIGLLDEKQKKYFQKQCHECIEHIRKQNWFEAFEILDKLLDGDLTSDPSYFQNVTGCS 312
Query: 852 NFYNILTKSSPMSAVESSLEFTQSHLVRLFQRHVRHLQQNALSQLMNGPIRKKLKIIPED 1031
N+YN L + P E L + V+ L + Q ++ +
Sbjct: 313 NYYNFLRCTEP----EDQLYY------------VKFLSLPEVRQAIH---------VGNQ 347
Query: 1032 CFWGGQATNVFLNMEGDFMKPVISIVDELLEAGVNVTVYNGQLDLIVDTMGQEAWLRKLK 1211
F G +L D ++ V + E++ V +YNGQLD+IV E L +
Sbjct: 348 TFNDGTIVEKYL--REDTVQSVKPWLTEIMN-NYKVLIYNGQLDIIVAAALTERSLMGMD 404
Query: 1212 W 1214
W
Sbjct: 405 W 405
>ref|NP_112601.3| probable serine carboxypeptidase CPVL precursor [Homo sapiens].
Length = 476
Score = 110 bits (276), Expect = 2e-24
Identities = 95/361 (26%), Positives = 159/361 (44%), Gaps = 14/361 (3%)
Frame = +3
Query: 174 YVTVRK--DAHMFWWLYYATNPCKNFTELPLVMWLQXXXXXXXXXXXNFEEIGPL----D 335
++TV K ++++F+W + A + + P+V+WLQ F E GP +
Sbjct: 77 FLTVNKTYNSNLFFWFFPAQIQPE---DAPVVLWLQGGPGGSSMFGL-FVEHGPYVVTSN 132
Query: 336 SDLKPRRTTWLQAASLLFVDNPVGTGFSYVNRSNAYAKDLATVASDMMVLLKTFFDRHKE 515
L+ R W S+L++DNPVGTGFS+ + ++ YA + VA D+ L FF E
Sbjct: 133 MTLRDRDFPWTTTLSMLYIDNPVGTGFSFTDDTHGYAVNEDDVARDLYSALIQFFQIFPE 192
Query: 516 FQTIPFYIFSESYGGKMAAGIALELHKAIQQGTIQCNFAGVALGDSWISPLDSVVSWGPY 695
++ FY+ ESY GK IA +H ++ N G+A+GD + P + + +
Sbjct: 193 YKNNDFYVTGESYAGKYVPAIAHLIHSLNPVREVKINLNGIAIGDGYSDPESIIGGYAEF 252
Query: 696 LYSMSLLDDQGLAEVSQVAEQVLDAINKGLYREATDLWGK-------AEMVVEQNTDGV- 851
LY + LLD++ + + ++ I K + EA ++ K ++ QN G
Sbjct: 253 LYQIGLLDEKQKKYFQKQCHECIEHIRKQNWFEAFEILDKLLDGDLTSDPSYFQNVTGCS 312
Query: 852 NFYNILTKSSPMSAVESSLEFTQSHLVRLFQRHVRHLQQNALSQLMNGPIRKKLKIIPED 1031
N+YN L + P E L + V+ L + Q ++ +
Sbjct: 313 NYYNFLRCTEP----EDQLYY------------VKFLSLPEVRQAIH---------VGNQ 347
Query: 1032 CFWGGQATNVFLNMEGDFMKPVISIVDELLEAGVNVTVYNGQLDLIVDTMGQEAWLRKLK 1211
F G +L D ++ V + E++ V +YNGQLD+IV E L +
Sbjct: 348 TFNDGTIVEKYL--REDTVQSVKPWLTEIMN-NYKVLIYNGQLDIIVAAALTERSLMGMD 404
Query: 1212 W 1214
W
Sbjct: 405 W 405
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,862,947
Number of extensions: 1544323
Number of successful extensions: 4846
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4844
Number of HSP's successfully gapped: 3
Length of query: 405
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 300
Effective length of database: 14,835,944
Effective search space: 4450783200
Effective search space used: 4450783200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012449
(1216 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 303 1e-79
>Sscrofa_Chr12
|| Length = 63588571
Score = 303 bits (153), Expect = 1e-79
Identities = 156/157 (99%)
Strand = Plus / Minus
Query: 365 gcttcaggcagccagtctcctgtttgtggataaccctgtgggcactgggttcagttacgt 424
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 34014959 gcttcaggcagccagtcttctgtttgtggataaccctgtgggcactgggttcagttacgt 34014900
Query: 425 gaacaggagtaatgcctacgccaaagacctggccacggtggcatcagacatgatggtgct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34014899 gaacaggagtaatgcctacgccaaagacctggccacggtggcatcagacatgatggtgct 34014840
Query: 485 cctgaagaccttctttgatcgccacaaagaattccag 521
|||||||||||||||||||||||||||||||||||||
Sbjct: 34014839 cctgaagaccttctttgatcgccacaaagaattccag 34014803
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 126 ggagcagtcctcaactggtccacagaggaaggcaaggaagcatgggattatgtgactgtc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34023511 ggagcagtcctcaactggtccacagaggaaggcaaggaagcatgggattatgtgactgtc 34023452
Query: 186 cggaaagatgcccacatgttctggtggctctattatgccaccaacccctgcaagaacttc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34023451 cggaaagatgcccacatgttctggtggctctattatgccaccaacccctgcaagaacttc 34023392
Query: 246 acagaactgcccctggtcatgtggcttcagg 276
|||||||||||||||||||||||||||||||
Sbjct: 34023391 acagaactgcccctggtcatgtggcttcagg 34023361
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 1043 aggccaggctaccaatgtgtttctgaacatggagggggacttcatgaagccggtcatcag 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34000546 aggccaggctaccaatgtgtttctgaacatggagggggacttcatgaagccggtcatcag 34000487
Query: 1103 cattgtagacgagttgctagaagccggggtcaacgtgaccgtgtataacggacagctcga 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34000486 cattgtagacgagttgctagaagccggggtcaacgtgaccgtgtataacggacagctcga 34000427
Query: 1163 cctcatcgtggacaccatgggt 1184
||||||||||||||||||||||
Sbjct: 34000426 cctcatcgtggacaccatgggt 34000405
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 707 gtctcttctcgatgaccaaggtctggcagaggtgtctcaggttgcagagcaagtcttgga 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34003978 gtctcttctcgatgaccaaggtctggcagaggtgtctcaggttgcagagcaagtcttgga 34003919
Query: 767 tgccatcaacaagggactctacagagaggccaccgacctgtgggggaaagccgaaatggt 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34003918 tgccatcaacaagggactctacagagaggccaccgacctgtgggggaaagccgaaatggt 34003859
Query: 827 tgtcgaacag 836
||||||||||
Sbjct: 34003858 tgtcgaacag 34003849
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 1 acgatcacgtggtggggcgcagggtccagccttgtagttgatgctgacgcccggtattcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34027377 acgatcacgtggtggggcgcagggtccagccttgtagttgatgctgacgcccggtattcg 34027318
Query: 61 ccatggagctggcgcagcggagctgtcccgtgccgttgctactgctgcttctgggcctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34027317 ccatggagctggcgcagcggagctgtcccgtgccgttgctactgctgcttctgggcctga 34027258
Query: 121 gcaccgg 127
|||||||
Sbjct: 34027257 gcaccgg 34027251
Score = 234 bits (118), Expect = 9e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 928 tagttcgtcttttccagcgccacgtgagacacctacaacagaatgccttgagtcagctca 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34002106 tagttcgtcttttccagcgccacgtgagacacctacaacagaatgccttgagtcagctca 34002047
Query: 988 tgaatgggcccatcagaaagaagctcaaaatcattcctgaagactgcttctggggagg 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34002046 tgaatgggcccatcagaaagaagctcaaaatcattcctgaagactgcttctggggagg 34001989
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 834 cagaacacagatggggtgaacttctataacatcttaacgaagagctcccccatgtctgca 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34002979 cagaacacagatggggtgaacttctataacatcttaacgaagagctcccccatgtctgca 34002920
Query: 894 gtggagtcgagtctagaattcacccagagccacctag 930
|||||||||||||||||||||||||||||||||||||
Sbjct: 34002919 gtggagtcgagtctagaattcacccagagccacctag 34002883
Score = 184 bits (93), Expect = 8e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 273 cagggcggtccgggtggttccagcactggattcgggaactttgaggaaatcgggcccctt 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34016610 cagggcggtccgggtggttccagcactggattcgggaactttgaggaaatcgggcccctt 34016551
Query: 333 gacagtgatctcaaaccacggagaactacttgg 365
|||||||||||||||||||||||||||||||||
Sbjct: 34016550 gacagtgatctcaaaccacggagaactacttgg 34016518
Score = 155 bits (78), Expect = 7e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 520 agacgattccattctacattttctcagagtcctatggaggaaaaatggctgcgggcattg 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34014444 agacgattccattctacattttctcagagtcctatggaggaaaaatggctgcgggcattg 34014385
Query: 580 ctctagaacttcacaagg 597
||||||||||||||||||
Sbjct: 34014384 ctctagaacttcacaagg 34014367
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 595 aggccattcagcaagggaccatccagtgcaactttgccggcgttgctttaggtgactcct 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34009700 aggccattcagcaagggaccatccagtgcaactttgccggcgttgctttaggtgactcct 34009641
Query: 655 ggatctctccccttg 669
|||||||||||||||
Sbjct: 34009640 ggatctctccccttg 34009626
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 669 gattcggtggtctcctgggggccttacctgtacagcatg 707
|||||||||||||||||||||||||||||||||||||||
Sbjct: 34005080 gattcggtggtctcctgggggccttacctgtacagcatg 34005042
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 1182 ggtcaggaggcctggttacgaaaactgaagtgggc 1216
|||||||||||||||||||||||||||||||||||
Sbjct: 33999467 ggtcaggaggcctggttacgaaaactgaagtgggc 33999433
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,989,143
Number of extensions: 153
Number of successful extensions: 153
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 12
Length of query: 1216
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1195
Effective length of database: 2,808,413,156
Effective search space: 3356053721420
Effective search space used: 3356053721420
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)