Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012453
(2367 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069186.1| tripeptidyl-peptidase 1 precursor [Bos tauru... 1048 0.0
>ref|NP_001069186.1| tripeptidyl-peptidase 1 precursor [Bos taurus].
Length = 563
Score = 1048 bits (2710), Expect = 0.0
Identities = 511/563 (90%), Positives = 523/563 (92%)
Frame = +1
Query: 31 MGPRACLLGLLALSVAGQCSYSPEPDQQRTLPPGWVSLGRADPEEELSLTFALRQQNVDR 210
MGPR+ LLGL AL VAG+CSYSPEPDQQR LPPGWVSLGRADPEEELSLTFALRQQNV R
Sbjct: 1 MGPRSGLLGLFALFVAGKCSYSPEPDQQRRLPPGWVSLGRADPEEELSLTFALRQQNVKR 60
Query: 211 LSELVQAVSDPGSPRYGKYLALEDVADLVRPSQLTLHMVQKWLLAAGARNCHSVTTQDFL 390
LSELVQAVSDPGSPRYGKYL LEDVA+LVRPS LTLH VQKWLLAAGARNCHSVTTQDFL
Sbjct: 61 LSELVQAVSDPGSPRYGKYLTLEDVAELVRPSPLTLHTVQKWLLAAGARNCHSVTTQDFL 120
Query: 391 TCWLSVRQAELLLSGAEFHRYVGGPAETHAVRSPHPYRLPKALASHVDFVGGLHRFPPTS 570
TCWLSVRQAELLLSGAEFH YVGGPAETHAVRS HPYRLPKALA HVDFVGGLHRFPPTS
Sbjct: 121 TCWLSVRQAELLLSGAEFHHYVGGPAETHAVRSLHPYRLPKALAPHVDFVGGLHRFPPTS 180
Query: 571 TLRQRPEPQVTGTLGLHLGVTPSVIRKRYNLTAQDVGSGATNNSQACAQFLEQYFHASDL 750
TLRQ PEPQV GT+GLHLGVTPSVIRKRYNLTAQDVGSG TNNSQACAQFLEQYFH SDL
Sbjct: 181 TLRQHPEPQVPGTVGLHLGVTPSVIRKRYNLTAQDVGSGTTNNSQACAQFLEQYFHDSDL 240
Query: 751 AEFMRLFGGSFVHXXXXXXXXXXXXXXXXXIEASLDVEYLMSAGANISTWVYSSPGRHES 930
AEFMRLFGG F H IEASLDVEYLMSAGANISTWVYSSPGRHES
Sbjct: 241 AEFMRLFGGDFAHQASVARVVGQQGRGRAGIEASLDVEYLMSAGANISTWVYSSPGRHES 300
Query: 931 QEPFLQWLLLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNVELMKAAARGLTLLFASGD 1110
QEPFLQWLLLLSNESALP+VHTVSYGDDEDSLSS YIQRVN ELMKAAARGLTLLFASGD
Sbjct: 301 QEPFLQWLLLLSNESALPYVHTVSYGDDEDSLSSTYIQRVNTELMKAAARGLTLLFASGD 360
Query: 1111 SGAGCWSVSGRHQFRPSFPASSPYVTTVGGTSFQNPFRITNEVVDYISGGGFSNVFPRPS 1290
SGAGCWSVSGRHQFRPSFPASSPYVTTVGGTSFQNPFR+T+EVVDYISGGGFSNVFPRPS
Sbjct: 361 SGAGCWSVSGRHQFRPSFPASSPYVTTVGGTSFQNPFRVTDEVVDYISGGGFSNVFPRPS 420
Query: 1291 YQEEAVTSYLTSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNHVPIPWVSGTSASTPV 1470
YQEEAVT YL+SSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNHVPIPWVSGTSASTPV
Sbjct: 421 YQEEAVTRYLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNHVPIPWVSGTSASTPV 480
Query: 1471 FGGFLSLINEHRILRGHPPLGFLNPRLYKQHGAGLFDVTHGCHESCLNEEVEGQGFCSGP 1650
FGG LSLINEHRILRG PPLGFLNPRLY++HGAGLFDVT GCHESCLNEEVEGQGFCSGP
Sbjct: 481 FGGLLSLINEHRILRGLPPLGFLNPRLYQKHGAGLFDVTRGCHESCLNEEVEGQGFCSGP 540
Query: 1651 GWDPVTGWGTPNFPALLKTLIDP 1719
GWDPVTGWGTPNFPALLKTL++P
Sbjct: 541 GWDPVTGWGTPNFPALLKTLMNP 563
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 99,086,775
Number of extensions: 3105501
Number of successful extensions: 14851
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 14696
Number of HSP's successfully gapped: 1
Length of query: 789
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 679
Effective length of database: 14,041,694
Effective search space: 9534310226
Effective search space used: 9534310226
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012453
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012453
(2367 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013869.1| tripeptidyl-peptidase 1 precursor [Canis lup... 1010 0.0
Alignment gi|XP_855613.1| PREDICTED: tripeptidyl peptidase 1 [Canis famil... 1010 0.0
>ref|NP_001013869.1| tripeptidyl-peptidase 1 precursor [Canis lupus familiaris].
Length = 563
Score = 1010 bits (2612), Expect = 0.0
Identities = 490/560 (87%), Positives = 509/560 (90%)
Frame = +1
Query: 40 RACLLGLLALSVAGQCSYSPEPDQQRTLPPGWVSLGRADPEEELSLTFALRQQNVDRLSE 219
R CLLGLLAL VA +CSYSPEPDQQRTLPPGWVSLGR D EEELSLTFALRQQNV+RLS+
Sbjct: 4 RTCLLGLLALCVASKCSYSPEPDQQRTLPPGWVSLGRVDSEEELSLTFALRQQNVERLSK 63
Query: 220 LVQAVSDPGSPRYGKYLALEDVADLVRPSQLTLHMVQKWLLAAGARNCHSVTTQDFLTCW 399
LVQAVSDPGSP YGKYL LEDVA+LVRPS LT VQKWL AAGARNCHSVTTQDFLTCW
Sbjct: 64 LVQAVSDPGSPHYGKYLTLEDVAELVRPSPLTFRTVQKWLSAAGARNCHSVTTQDFLTCW 123
Query: 400 LSVRQAELLLSGAEFHRYVGGPAETHAVRSPHPYRLPKALASHVDFVGGLHRFPPTSTLR 579
LSVRQAELLLSGAEFHRYVGGP E H +RS PY+LPKALA HVDFVGGLHRFPPTS+LR
Sbjct: 124 LSVRQAELLLSGAEFHRYVGGPTEIHVIRSLRPYQLPKALAPHVDFVGGLHRFPPTSSLR 183
Query: 580 QRPEPQVTGTLGLHLGVTPSVIRKRYNLTAQDVGSGATNNSQACAQFLEQYFHASDLAEF 759
QRPEPQV+GT+GLHLGVTPSVIR+RYNLTAQDVGSG TNNSQACAQFLEQYFHASDLAEF
Sbjct: 184 QRPEPQVSGTVGLHLGVTPSVIRQRYNLTAQDVGSGTTNNSQACAQFLEQYFHASDLAEF 243
Query: 760 MRLFGGSFVHXXXXXXXXXXXXXXXXXIEASLDVEYLMSAGANISTWVYSSPGRHESQEP 939
MRLFGG+F H IEASLDVEYLMSAGANISTWVYSSPGRHESQEP
Sbjct: 244 MRLFGGNFAHQASVARVVGQQGRGRAGIEASLDVEYLMSAGANISTWVYSSPGRHESQEP 303
Query: 940 FLQWLLLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNVELMKAAARGLTLLFASGDSGA 1119
FLQWLLLLSNESALPHVHTVSYGDDEDSLSSAYIQRVN E MKAAARGLTLLFASGDSGA
Sbjct: 304 FLQWLLLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTEFMKAAARGLTLLFASGDSGA 363
Query: 1120 GCWSVSGRHQFRPSFPASSPYVTTVGGTSFQNPFRITNEVVDYISGGGFSNVFPRPSYQE 1299
GCWSVS RHQFRPSFPASSPYVTTVGGTSFQNPFR+T E+VDYISGGGFSNVFP+PSYQE
Sbjct: 364 GCWSVSRRHQFRPSFPASSPYVTTVGGTSFQNPFRVTTEIVDYISGGGFSNVFPQPSYQE 423
Query: 1300 EAVTSYLTSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNHVPIPWVSGTSASTPVFGG 1479
EAV +L+SSPHLPPSSYFNASGRAYPDVAALSDGYWVVSN VPIPWVSGTSASTPVFGG
Sbjct: 424 EAVVQFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNSVPIPWVSGTSASTPVFGG 483
Query: 1480 FLSLINEHRILRGHPPLGFLNPRLYKQHGAGLFDVTHGCHESCLNEEVEGQGFCSGPGWD 1659
LSLINEHR+L G PPLGFLNPRLY+Q GAGLFDVT GCHESCLNEEV+GQGFCSGPGWD
Sbjct: 484 ILSLINEHRLLSGLPPLGFLNPRLYQQRGAGLFDVTRGCHESCLNEEVQGQGFCSGPGWD 543
Query: 1660 PVTGWGTPNFPALLKTLIDP 1719
PVTGWGTPNFPALLK LI P
Sbjct: 544 PVTGWGTPNFPALLKALIKP 563
>ref|XP_855613.1| PREDICTED: tripeptidyl peptidase 1 [Canis familiaris].
Length = 563
Score = 1010 bits (2612), Expect = 0.0
Identities = 490/560 (87%), Positives = 509/560 (90%)
Frame = +1
Query: 40 RACLLGLLALSVAGQCSYSPEPDQQRTLPPGWVSLGRADPEEELSLTFALRQQNVDRLSE 219
R CLLGLLAL VA +CSYSPEPDQQRTLPPGWVSLGR D EEELSLTFALRQQNV+RLS+
Sbjct: 4 RTCLLGLLALCVASKCSYSPEPDQQRTLPPGWVSLGRVDSEEELSLTFALRQQNVERLSK 63
Query: 220 LVQAVSDPGSPRYGKYLALEDVADLVRPSQLTLHMVQKWLLAAGARNCHSVTTQDFLTCW 399
LVQAVSDPGSP YGKYL LEDVA+LVRPS LT VQKWL AAGARNCHSVTTQDFLTCW
Sbjct: 64 LVQAVSDPGSPHYGKYLTLEDVAELVRPSPLTFRTVQKWLSAAGARNCHSVTTQDFLTCW 123
Query: 400 LSVRQAELLLSGAEFHRYVGGPAETHAVRSPHPYRLPKALASHVDFVGGLHRFPPTSTLR 579
LSVRQAELLLSGAEFHRYVGGP E H +RS PY+LPKALA HVDFVGGLHRFPPTS+LR
Sbjct: 124 LSVRQAELLLSGAEFHRYVGGPTEIHVIRSLRPYQLPKALAPHVDFVGGLHRFPPTSSLR 183
Query: 580 QRPEPQVTGTLGLHLGVTPSVIRKRYNLTAQDVGSGATNNSQACAQFLEQYFHASDLAEF 759
QRPEPQV+GT+GLHLGVTPSVIR+RYNLTAQDVGSG TNNSQACAQFLEQYFHASDLAEF
Sbjct: 184 QRPEPQVSGTVGLHLGVTPSVIRQRYNLTAQDVGSGTTNNSQACAQFLEQYFHASDLAEF 243
Query: 760 MRLFGGSFVHXXXXXXXXXXXXXXXXXIEASLDVEYLMSAGANISTWVYSSPGRHESQEP 939
MRLFGG+F H IEASLDVEYLMSAGANISTWVYSSPGRHESQEP
Sbjct: 244 MRLFGGNFAHQASVARVVGQQGRGRAGIEASLDVEYLMSAGANISTWVYSSPGRHESQEP 303
Query: 940 FLQWLLLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNVELMKAAARGLTLLFASGDSGA 1119
FLQWLLLLSNESALPHVHTVSYGDDEDSLSSAYIQRVN E MKAAARGLTLLFASGDSGA
Sbjct: 304 FLQWLLLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTEFMKAAARGLTLLFASGDSGA 363
Query: 1120 GCWSVSGRHQFRPSFPASSPYVTTVGGTSFQNPFRITNEVVDYISGGGFSNVFPRPSYQE 1299
GCWSVS RHQFRPSFPASSPYVTTVGGTSFQNPFR+T E+VDYISGGGFSNVFP+PSYQE
Sbjct: 364 GCWSVSRRHQFRPSFPASSPYVTTVGGTSFQNPFRVTTEIVDYISGGGFSNVFPQPSYQE 423
Query: 1300 EAVTSYLTSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNHVPIPWVSGTSASTPVFGG 1479
EAV +L+SSPHLPPSSYFNASGRAYPDVAALSDGYWVVSN VPIPWVSGTSASTPVFGG
Sbjct: 424 EAVAQFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNSVPIPWVSGTSASTPVFGG 483
Query: 1480 FLSLINEHRILRGHPPLGFLNPRLYKQHGAGLFDVTHGCHESCLNEEVEGQGFCSGPGWD 1659
LSLINEHR+L G PPLGFLNPRLY+Q GAGLFDVT GCHESCLNEEV+GQGFCSGPGWD
Sbjct: 484 ILSLINEHRLLSGLPPLGFLNPRLYQQRGAGLFDVTRGCHESCLNEEVQGQGFCSGPGWD 543
Query: 1660 PVTGWGTPNFPALLKTLIDP 1719
PVTGWGTPNFPALLK LI P
Sbjct: 544 PVTGWGTPNFPALLKALIKP 563
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 103,030,883
Number of extensions: 3179602
Number of successful extensions: 14881
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 14718
Number of HSP's successfully gapped: 2
Length of query: 789
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 678
Effective length of database: 15,174,208
Effective search space: 10288113024
Effective search space used: 10288113024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012453
(2367 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357180.1| PREDICTED: tripeptidyl-peptidase 1-like [Sus... 1136 0.0
>ref|XP_003357180.1| PREDICTED: tripeptidyl-peptidase 1-like [Sus scrofa].
Length = 572
Score = 1136 bits (2939), Expect = 0.0
Identities = 555/572 (97%), Positives = 555/572 (97%)
Frame = +1
Query: 4 MTADLQKGRMGPRACLLGLLALSVAGQCSYSPEPDQQRTLPPGWVSLGRADPEEELSLTF 183
MTADLQKGRMGPRACLLGLLALSVAGQCSYSPEPDQQRTLPPGWVSLGRADPEEELSLTF
Sbjct: 1 MTADLQKGRMGPRACLLGLLALSVAGQCSYSPEPDQQRTLPPGWVSLGRADPEEELSLTF 60
Query: 184 ALRQQNVDRLSELVQAVSDPGSPRYGKYLALEDVADLVRPSQLTLHMVQKWLLAAGARNC 363
ALRQQNVDRLSELVQAVSDPGSPRYGKYLALEDVADLVRPSQLTLHMVQKWLLAAGARNC
Sbjct: 61 ALRQQNVDRLSELVQAVSDPGSPRYGKYLALEDVADLVRPSQLTLHMVQKWLLAAGARNC 120
Query: 364 HSVTTQDFLTCWLSVRQAELLLSGAEFHRYVGGPAETHAVRSPHPYRLPKALASHVDFVG 543
HSVTTQDFLTCWLSVRQAELLLSGAEFHRYVGGPAETHAVRSPHPYRLPKALASHVDFVG
Sbjct: 121 HSVTTQDFLTCWLSVRQAELLLSGAEFHRYVGGPAETHAVRSPHPYRLPKALASHVDFVG 180
Query: 544 GLHRFPPTSTLRQRPEPQVTGTLGLHLGVTPSVIRKRYNLTAQDVGSGATNNSQACAQFL 723
GLHRFPPTSTLRQRPEPQVTGTLGLHLGVTPSVIRKRYNLTAQDVGSGATNNSQACAQFL
Sbjct: 181 GLHRFPPTSTLRQRPEPQVTGTLGLHLGVTPSVIRKRYNLTAQDVGSGATNNSQACAQFL 240
Query: 724 EQYFHASDLAEFMRLFGGSFVHXXXXXXXXXXXXXXXXXIEASLDVEYLMSAGANISTWV 903
EQYFHASDLAEFMRLFGGSFVH IEASLDVEYLMSAGANISTWV
Sbjct: 241 EQYFHASDLAEFMRLFGGSFVHQAAVARVVGQQGRGRAGIEASLDVEYLMSAGANISTWV 300
Query: 904 YSSPGRHESQEPFLQWLLLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNVELMKAAARG 1083
YSSPGRHESQEPFLQWLLLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNVELMKAAARG
Sbjct: 301 YSSPGRHESQEPFLQWLLLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNVELMKAAARG 360
Query: 1084 LTLLFASGDSGAGCWSVSGRHQFRPSFPASSPYVTTVGGTSFQNPFRITNEVVDYISGGG 1263
LTLLFASGDSGAGCWSVSGRHQFRPSFPASSPYVTTVGGTSFQNPFRITNEVVDYISGGG
Sbjct: 361 LTLLFASGDSGAGCWSVSGRHQFRPSFPASSPYVTTVGGTSFQNPFRITNEVVDYISGGG 420
Query: 1264 FSNVFPRPSYQEEAVTSYLTSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNHVPIPWV 1443
FSNVFPRPSYQEEAVTSYLTSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNHVPIPWV
Sbjct: 421 FSNVFPRPSYQEEAVTSYLTSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNHVPIPWV 480
Query: 1444 SGTSASTPVFGGFLSLINEHRILRGHPPLGFLNPRLYKQHGAGLFDVTHGCHESCLNEEV 1623
SGTSASTPVFGGFLSLINEHRILRGHPPLGFLNPRLYKQHGAGLFDVTHGCHESCLNEEV
Sbjct: 481 SGTSASTPVFGGFLSLINEHRILRGHPPLGFLNPRLYKQHGAGLFDVTHGCHESCLNEEV 540
Query: 1624 EGQGFCSGPGWDPVTGWGTPNFPALLKTLIDP 1719
EGQGFCSGPGWDPVTGWGTPNFPALLKTLIDP
Sbjct: 541 EGQGFCSGPGWDPVTGWGTPNFPALLKTLIDP 572
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 64,086,082
Number of extensions: 2012236
Number of successful extensions: 9591
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9465
Number of HSP's successfully gapped: 1
Length of query: 789
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 682
Effective length of database: 8,679,953
Effective search space: 5919727946
Effective search space used: 5919727946
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012453
(2367 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034036.1| tripeptidyl-peptidase 1 precursor [Mus musculus]. 979 0.0
>ref|NP_034036.1| tripeptidyl-peptidase 1 precursor [Mus musculus].
Length = 562
Score = 979 bits (2532), Expect = 0.0
Identities = 474/563 (84%), Positives = 506/563 (89%)
Frame = +1
Query: 31 MGPRACLLGLLALSVAGQCSYSPEPDQQRTLPPGWVSLGRADPEEELSLTFALRQQNVDR 210
MG +A LLGLLAL +AG+C+Y+PEPDQ+ LPPGWVSLGR DPEEELSLTFAL+Q+N++R
Sbjct: 1 MGLQARLLGLLALVIAGKCTYNPEPDQRWMLPPGWVSLGRVDPEEELSLTFALKQRNLER 60
Query: 211 LSELVQAVSDPGSPRYGKYLALEDVADLVRPSQLTLHMVQKWLLAAGARNCHSVTTQDFL 390
LSELVQAVSDP SP+YGKYL LEDVA+LV+PS LTL VQKWL AAGARNC SVTTQDFL
Sbjct: 61 LSELVQAVSDPSSPQYGKYLTLEDVAELVQPSPLTLLTVQKWLSAAGARNCDSVTTQDFL 120
Query: 391 TCWLSVRQAELLLSGAEFHRYVGGPAETHAVRSPHPYRLPKALASHVDFVGGLHRFPPTS 570
TCWLSVRQAELLL GAEFHRYVGGP +TH +RSPHPY+LP+ALA HVDFVGGLHRFPP+S
Sbjct: 121 TCWLSVRQAELLLPGAEFHRYVGGPTKTHVIRSPHPYQLPQALAPHVDFVGGLHRFPPSS 180
Query: 571 TLRQRPEPQVTGTLGLHLGVTPSVIRKRYNLTAQDVGSGATNNSQACAQFLEQYFHASDL 750
RQRPEPQ GT+ LHLGVTPSV+R+RYNLTA+DVGSG TNNSQACAQFLEQYFH SDL
Sbjct: 181 P-RQRPEPQQVGTVSLHLGVTPSVLRQRYNLTAKDVGSGTTNNSQACAQFLEQYFHNSDL 239
Query: 751 AEFMRLFGGSFVHXXXXXXXXXXXXXXXXXIEASLDVEYLMSAGANISTWVYSSPGRHES 930
EFMRLFGGSF H IEASLDVEYLMSAGANISTWVYSSPGRHE+
Sbjct: 240 TEFMRLFGGSFTHQASVAKVVGKQGRGRAGIEASLDVEYLMSAGANISTWVYSSPGRHEA 299
Query: 931 QEPFLQWLLLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNVELMKAAARGLTLLFASGD 1110
QEPFLQWLLLLSNES+LPHVHTVSYGDDEDSLSS YIQRVN E MKAAARGLTLLFASGD
Sbjct: 300 QEPFLQWLLLLSNESSLPHVHTVSYGDDEDSLSSIYIQRVNTEFMKAAARGLTLLFASGD 359
Query: 1111 SGAGCWSVSGRHQFRPSFPASSPYVTTVGGTSFQNPFRITNEVVDYISGGGFSNVFPRPS 1290
+GAGCWSVSGRH+FRPSFPASSPYVTTVGGTSF+NPF IT+EVVDYISGGGFSNVFPRP
Sbjct: 360 TGAGCWSVSGRHKFRPSFPASSPYVTTVGGTSFKNPFLITDEVVDYISGGGFSNVFPRPP 419
Query: 1291 YQEEAVTSYLTSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNHVPIPWVSGTSASTPV 1470
YQEEAV +L SS HLPPSSYFNASGRAYPDVAALSDGYWVVSN VPIPWVSGTSASTPV
Sbjct: 420 YQEEAVAQFLKSSSHLPPSSYFNASGRAYPDVAALSDGYWVVSNMVPIPWVSGTSASTPV 479
Query: 1471 FGGFLSLINEHRILRGHPPLGFLNPRLYKQHGAGLFDVTHGCHESCLNEEVEGQGFCSGP 1650
FGG LSLINEHRIL G PPLGFLNPRLY+QHG GLFDVTHGCHESCLNEEVEGQGFCSGP
Sbjct: 480 FGGILSLINEHRILNGRPPLGFLNPRLYQQHGTGLFDVTHGCHESCLNEEVEGQGFCSGP 539
Query: 1651 GWDPVTGWGTPNFPALLKTLIDP 1719
GWDPVTGWGTPNFPALLKTL++P
Sbjct: 540 GWDPVTGWGTPNFPALLKTLLNP 562
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 84,959,723
Number of extensions: 2566168
Number of successful extensions: 11766
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11598
Number of HSP's successfully gapped: 1
Length of query: 789
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 680
Effective length of database: 12,343,635
Effective search space: 8393671800
Effective search space used: 8393671800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012453
(2367 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000382.3| tripeptidyl-peptidase 1 preproprotein [Homo sap... 1023 0.0
>ref|NP_000382.3| tripeptidyl-peptidase 1 preproprotein [Homo sapiens].
Length = 563
Score = 1023 bits (2645), Expect = 0.0
Identities = 491/563 (87%), Positives = 519/563 (92%)
Frame = +1
Query: 31 MGPRACLLGLLALSVAGQCSYSPEPDQQRTLPPGWVSLGRADPEEELSLTFALRQQNVDR 210
MG +ACLLGL AL ++G+CSYSPEPDQ+RTLPPGWVSLGRADPEEELSLTFALRQQNV+R
Sbjct: 1 MGLQACLLGLFALILSGKCSYSPEPDQRRTLPPGWVSLGRADPEEELSLTFALRQQNVER 60
Query: 211 LSELVQAVSDPGSPRYGKYLALEDVADLVRPSQLTLHMVQKWLLAAGARNCHSVTTQDFL 390
LSELVQAVSDP SP+YGKYL LE+VADLVRPS LTLH VQKWLLAAGA+ CHSV TQDFL
Sbjct: 61 LSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTVQKWLLAAGAQKCHSVITQDFL 120
Query: 391 TCWLSVRQAELLLSGAEFHRYVGGPAETHAVRSPHPYRLPKALASHVDFVGGLHRFPPTS 570
TCWLS+RQAELLL GAEFH YVGGP ETH VRSPHPY+LP+ALA HVDFVGGLHRFPPTS
Sbjct: 121 TCWLSIRQAELLLPGAEFHHYVGGPTETHVVRSPHPYQLPQALAPHVDFVGGLHRFPPTS 180
Query: 571 TLRQRPEPQVTGTLGLHLGVTPSVIRKRYNLTAQDVGSGATNNSQACAQFLEQYFHASDL 750
+LRQRPEPQVTGT+GLHLGVTPSVIRKRYNLT+QDVGSG +NNSQACAQFLEQYFH SDL
Sbjct: 181 SLRQRPEPQVTGTVGLHLGVTPSVIRKRYNLTSQDVGSGTSNNSQACAQFLEQYFHDSDL 240
Query: 751 AEFMRLFGGSFVHXXXXXXXXXXXXXXXXXIEASLDVEYLMSAGANISTWVYSSPGRHES 930
A+FMRLFGG+F H IEASLDV+YLMSAGANISTWVYSSPGRHE
Sbjct: 241 AQFMRLFGGNFAHQASVARVVGQQGRGRAGIEASLDVQYLMSAGANISTWVYSSPGRHEG 300
Query: 931 QEPFLQWLLLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNVELMKAAARGLTLLFASGD 1110
QEPFLQWL+LLSNESALPHVHTVSYGDDEDSLSSAYIQRVN ELMKAAARGLTLLFASGD
Sbjct: 301 QEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGD 360
Query: 1111 SGAGCWSVSGRHQFRPSFPASSPYVTTVGGTSFQNPFRITNEVVDYISGGGFSNVFPRPS 1290
SGAGCWSVSGRHQFRP+FPASSPYVTTVGGTSFQ PF ITNE+VDYISGGGFSNVFPRPS
Sbjct: 361 SGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRPS 420
Query: 1291 YQEEAVTSYLTSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNHVPIPWVSGTSASTPV 1470
YQEEAVT +L+SSPHLPPSSYFNASGRAYPDVAALSDGYWVVSN VPIPWVSGTSASTPV
Sbjct: 421 YQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPV 480
Query: 1471 FGGFLSLINEHRILRGHPPLGFLNPRLYKQHGAGLFDVTHGCHESCLNEEVEGQGFCSGP 1650
FGG LSLINEHRIL G PPLGFLNPRLY+QHGAGLFDVT GCHESCL+EEVEGQGFCSGP
Sbjct: 481 FGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGP 540
Query: 1651 GWDPVTGWGTPNFPALLKTLIDP 1719
GWDPVTGWGTPNFPALLKTL++P
Sbjct: 541 GWDPVTGWGTPNFPALLKTLLNP 563
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 100,977,057
Number of extensions: 3108427
Number of successful extensions: 14510
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 14353
Number of HSP's successfully gapped: 1
Length of query: 789
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 678
Effective length of database: 14,638,160
Effective search space: 9924672480
Effective search space used: 9924672480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012453
(2367 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1423 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 1423 bits (718), Expect = 0.0
Identities = 764/786 (97%)
Strand = Plus / Plus
Query: 1582 gtgacccatggctgccacgagtcctgtctgaatgaggaggtggagggccaaggtttctgc 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798281 gtgacccatggctgccacgagtcctgtctgaatgaggaggtggagggccaaggtttctgc 3798340
Query: 1642 tcgggccctggctgggatcctgtgacaggctgggggacacccaacttcccagctctgctg 1701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798341 tcgggccctggctgggatcctgtgacaggctgggggacacccaacttcccagctctgctg 3798400
Query: 1702 aagacactaatcgacccttgaccctgtgctgctagaaaagggggcctgtccgctgcccca 1761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798401 aagacactaatcgacccttgaccctgtgctgctagaaaagggggcctgtccgctgcccca 3798460
Query: 1762 cagctggtggctccgtcccttattctgcactgccagaagccctgatgaaccctcaactgc 1821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798461 cagctggtggctccgtcccttattctgcactgccagaagccctgatgaaccctcaactgc 3798520
Query: 1822 tgatcgctgcacacagctgctctccccagcccggaaaggctgtgcacttgactgctaagc 1881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798521 tgatcgctgcacacagctgctctccccagcccggaaaggctgtgcacttgactgctaagc 3798580
Query: 1882 ccacctgcgccatcacactcagggcccccttcacctgtcccaggcccctctactgatgca 1941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798581 ccacctgcgccatcacactcagggcccccttcacctgtcccaggcccctctactgatgca 3798640
Query: 1942 ctgtccgggagcctccccgaaccannnnnnnnnnnnnnnnnnnnatgtcttcttgggctt 2001
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3798641 ctgtccgggagcctccccgaaccaccccctccccccctgcccccatgtcttcttgggctt 3798700
Query: 2002 ttcagcaaggcttttccacggggttgccggcactatctgtataccctgcttcccctcagc 2061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798701 ttcagcaaggcttttccacggggttgccggcactatctgtataccctgcttcccctcagc 3798760
Query: 2062 ttcactcctcaattcattgccttgaggcctctgctctctcactttctcactcctccctgg 2121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798761 ttcactcctcaattcattgccttgaggcctctgctctctcactttctcactcctccctgg 3798820
Query: 2122 tccggcgcacacgtgccagtcttggctttacgagctctgtcaccggtgcctgccccctct 2181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798821 tccggcgcacacgtgccagtcttggctttacgagctctgtcaccggtgcctgccccctct 3798880
Query: 2182 cctgccctggctttcggggtctctgaccaccccctcttcctctttcatcctctctttcct 2241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798881 cctgccctggctttcggggtctctgaccaccccctcttcctctttcatcctctctttcct 3798940
Query: 2242 ctttctctgcttcctcactgaatgctggtgtccttcacggctccagccctacccttctgc 2301
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3798941 ctttctctgcttcctcactgaatgctggtgtccttcacggctccagccttacccttctgc 3799000
Query: 2302 tcttctcatcgtctccgcaaacaaatcacccgctggcatccccagccatcaccatctcat 2361
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3799001 tcttctcatcgtctccgcaaacaaatcaaccgctggcatccccagccatcaccatctcat 3799060
Query: 2362 taaatc 2367
||||||
Sbjct: 3799061 taaatc 3799066
Score = 400 bits (202), Expect = e-108
Identities = 202/202 (100%)
Strand = Plus / Plus
Query: 716 agttcctggagcagtatttccacgcctccgacctggccgagttcatgcgcctcttcggtg 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3795965 agttcctggagcagtatttccacgcctccgacctggccgagttcatgcgcctcttcggtg 3796024
Query: 776 ggagctttgtgcaccaggcagccgtagcccgcgtggtggggcagcagggccggggccggg 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3796025 ggagctttgtgcaccaggcagccgtagcccgcgtggtggggcagcagggccggggccggg 3796084
Query: 836 ccgggatcgaggccagcctagacgtggagtacctgatgagcgccggcgccaacatctcca 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3796085 ccgggatcgaggccagcctagacgtggagtacctgatgagcgccggcgccaacatctcca 3796144
Query: 896 cctgggtctacagcagcccggg 917
||||||||||||||||||||||
Sbjct: 3796145 cctgggtctacagcagcccggg 3796166
Score = 387 bits (195), Expect = e-104
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 916 ggccggcacgagtcacaggagcccttcctgcagtggctcctgctgctcagtaacgagtcg 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3796299 ggccggcacgagtcacaggagcccttcctgcagtggctcctgctgctcagtaacgagtcg 3796358
Query: 976 gccctgccacacgtgcacaccgtgagctacggggatgacgaggactccctcagcagcgcc 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3796359 gccctgccacacgtgcacaccgtgagctacggggatgacgaggactccctcagcagcgcc 3796418
Query: 1036 tacatccagcgcgtcaacgtcgagctcatgaaggctgctgctcgggggctcaccctgctc 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3796419 tacatccagcgcgtcaacgtcgagctcatgaaggctgctgctcgggggctcaccctgctc 3796478
Query: 1096 tttgcctcaggtgac 1110
|||||||||||||||
Sbjct: 3796479 tttgcctcaggtgac 3796493
Score = 339 bits (171), Expect = 4e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 547 ctgcaccgctttccccccacatcaaccctgaggcagcgccctgagccacaggtgacgggg 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3795628 ctgcaccgctttccccccacatcaaccctgaggcagcgccctgagccacaggtgacgggg 3795687
Query: 607 accctgggcctgcacctgggggtgaccccgtccgtgatccgcaagcggtacaacttgacg 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3795688 accctgggcctgcacctgggggtgaccccgtccgtgatccgcaagcggtacaacttgacg 3795747
Query: 667 gcacaagatgtgggctctggcgccaccaacaacagccaagcctgtgcccag 717
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3795748 gcacaagatgtgggctctggcgccaccaacaacagccaagcctgtgcccag 3795798
Score = 323 bits (163), Expect = 3e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 1294 caggaggaagctgtcacctcgtacctgacctctagcccacacctgccaccatccagctac 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3797691 caggaggaagctgtcacctcgtacctgacctctagcccacacctgccaccatccagctac 3797750
Query: 1354 ttcaatgcaagcggccgtgcctacccagacgtggctgccctctccgatggctactgggtg 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3797751 ttcaatgcaagcggccgtgcctacccagacgtggctgccctctccgatggctactgggtg 3797810
Query: 1414 gtcagcaaccacgtgcccattccgtgggtgtctggcacctcgg 1456
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3797811 gtcagcaaccacgtgcccattccgtgggtgtctggcacctcgg 3797853
Score = 301 bits (152), Expect = 9e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 259 ggaaagtacctggccctagaggatgtggctgacctggtccggccatcgcaactgacactc 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3794730 ggaaagtacctggccctagaggatgtggctgacctggtccggccatcgcaactgacactc 3794789
Query: 319 cacatggtccaaaaatggcttttggcggctggagcccggaactgtcactcggtgaccaca 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3794790 cacatggtccaaaaatggcttttggcggctggagcccggaactgtcactcggtgaccaca 3794849
Query: 379 caggactttctgacttgctggctgagtgtccg 410
||||||||||||||||||||||||||||||||
Sbjct: 3794850 caggactttctgacttgctggctgagtgtccg 3794881
Score = 280 bits (141), Expect = 3e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 120 gctgcccccaggctgggtgtccctgggccgtgcggaccctgaggaagagctgagtctcac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3793338 gctgcccccaggctgggtgtccctgggccgtgcggaccctgaggaagagctgagtctcac 3793397
Query: 180 ctttgccctgagacagcagaacgtggacagactgtctgagctggtgcaggctgtgtcgga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3793398 ctttgccctgagacagcagaacgtggacagactgtctgagctggtgcaggctgtgtcgga 3793457
Query: 240 ccctggctctcctcgctacgg 260
|||||||||||||||||||||
Sbjct: 3793458 ccctggctctcctcgctacgg 3793478
Score = 260 bits (131), Expect = 3e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 1455 ggcctccactcccgtgttcgggggattcctgtccctgataaatgagcacagaatcctcag 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798023 ggcctccactcccgtgttcgggggattcctgtccctgataaatgagcacagaatcctcag 3798082
Query: 1515 aggccacccacctcttggctttctcaacccaaggctctacaagcagcatggagcagggct 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798083 aggccacccacctcttggctttctcaacccaaggctctacaagcagcatggagcagggct 3798142
Query: 1575 ctttgatgtga 1585
|||||||||||
Sbjct: 3798143 ctttgatgtga 3798153
Score = 256 bits (129), Expect = 5e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 410 gacaggcggagctgctgctctctggggctgagttccatcgctatgtggggggacctgcag 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3795052 gacaggcggagctgctgctctctggggctgagttccatcgctatgtggggggacctgcag 3795111
Query: 470 agacccatgctgtaaggtccccgcatccctacagactcccgaaggccttggcctcccacg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3795112 agacccatgctgtaaggtccccgcatccctacagactcccgaaggccttggcctcccacg 3795171
Query: 530 tggactttg 538
|||||||||
Sbjct: 3795172 tggactttg 3795180
Score = 248 bits (125), Expect = 1e-62
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 1173 cagcccctacgtcaccacggtgggaggcacatccttccagaatcctttccgaatcacaaa 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3797487 cagcccctacgtcaccacggtgggaggcacatccttccagaatcctttccgaatcacaaa 3797546
Query: 1233 tgaggtcgttgactatatcagcggtggcggcttcagcaacgtgttcccccggccttcata 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3797547 tgaggtcgttgactatatcagcggtggcggcttcagcaacgtgttcccccggccttcata 3797606
Query: 1293 ccagg 1297
|||||
Sbjct: 3797607 ccagg 3797611
Score = 147 bits (74), Expect = 3e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 47 gcctccttgggctcctcgccctctctgtcgccggccagtgcagttacagcccggagcctg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3793009 gcctccttgggctcctcgccctctctgtcgccggccagtgcagttacagcccggagcctg 3793068
Query: 107 accagcagcggacg 120
||||||||||||||
Sbjct: 3793069 accagcagcggacg 3793082
Score = 145 bits (73), Expect = 1e-31
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1103 caggtgacagtggggctgggtgttggtcagtctctggaagacaccagttccgtcccagct 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3796730 caggtgacagtggggctgggtgttggtcagtctctggaagacaccagttccgtcccagct 3796789
Query: 1163 tccctgcctccag 1175
|||||||||||||
Sbjct: 3796790 tccctgcctccag 3796802
Score = 91.7 bits (46), Expect = 2e-15
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 2 atatgacagcagatctgcagaaaggccggatgggaccccgagcctg 47
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3792868 atatgacagcagatctgcagaaaggccggatgggaccccgagcctg 3792913
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 59,996,668
Number of extensions: 524
Number of successful extensions: 524
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 14
Length of query: 2367
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2345
Effective length of database: 2,808,408,574
Effective search space: 6585718106030
Effective search space used: 6585718106030
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)