Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012457
(1503 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077240.1| cysteine and glycine-rich protein 1 [Bos tau... 318 6e-87
Alignment gi|NP_001033272.1| cysteine and glycine-rich protein 2 [Bos tau... 256 3e-68
Alignment gi|NP_001019860.1| cysteine and glycine-rich protein 3 [Bos tau... 216 6e-56
Alignment gi|NP_001073117.1| cysteine-rich protein 2 [Bos taurus]. 96 8e-20
Alignment gi|NP_001179618.1| cysteine-rich protein 3 [Bos taurus]. 73 8e-13
Alignment gi|XP_002697300.1| PREDICTED: cysteine-rich protein 3-like [Bos... 73 8e-13
Alignment gi|NP_001020520.1| cysteine-rich protein 1 [Bos taurus]. 65 2e-10
Alignment gi|XP_002687965.1| PREDICTED: microtubule associated monoxygena... 58 3e-08
Alignment gi|XP_002704520.1| PREDICTED: microtubule associated monoxygena... 58 3e-08
Alignment gi|XP_002693097.1| PREDICTED: microtubule associated monoxygena... 53 6e-07
>ref|NP_001077240.1| cysteine and glycine-rich protein 1 [Bos taurus].
Length = 193
Score = 318 bits (816), Expect = 6e-87
Identities = 150/193 (77%), Positives = 154/193 (79%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGGK+CGVCQKTVYFAEEVQCEGSSFHKSCFLC+VCKKNLDSTTVAVHGEEIYC
Sbjct: 1 MPNWGGGKKCGVCQKTVYFAEEVQCEGSSFHKSCFLCLVCKKNLDSTTVAVHGEEIYCKS 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 451
TLSMDKGESLGI+HEE PGHRPTTNPN SKFAQK+GGSERCP
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLSMDKGESLGIRHEEAPGHRPTTNPNTSKFAQKVGGSERCP 120
Query: 452 RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYXXXXXXXXX 631
RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY
Sbjct: 121 RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKGF 180
Query: 632 XXXXXXXXLVHSE 670
LVHSE
Sbjct: 181 GFGQGAGALVHSE 193
>ref|NP_001033272.1| cysteine and glycine-rich protein 2 [Bos taurus].
Length = 193
Score = 256 bits (655), Expect = 3e-68
Identities = 117/193 (60%), Positives = 134/193 (69%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MP WGGG +CG C +TVY AEEVQC+G SFH+ CFLCMVC+KNLDSTTVA+H EEIYC
Sbjct: 1 MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKS 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 451
TL+MD+GE LGIK E HRPTTNPN SKFAQK GG+E+C
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAEKCS 120
Query: 452 RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYXXXXXXXXX 631
RC +VYAAEK+IGAGK WHK+CFRCAKCGK LESTTL +K+GEIYCKGCY
Sbjct: 121 RCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGF 180
Query: 632 XXXXXXXXLVHSE 670
LVH++
Sbjct: 181 GYGQGAGALVHAQ 193
>ref|NP_001019860.1| cysteine and glycine-rich protein 3 [Bos taurus].
Length = 194
Score = 216 bits (549), Expect = 6e-56
Identities = 100/173 (57%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGG +CG C+KTVY AEE+QC G SFHK+CF CM C+K LDSTTVA H EIYC
Sbjct: 1 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETP--GHRPTTNPNASKFAQKIGGSER 445
LS D GE LG++ +++P TT+ N SKFA K G SE+
Sbjct: 61 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKQARSATTSSNPSKFA-KFGESEK 119
Query: 446 CPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY 604
CPRC ++VYAAEKV+G GK WHK+CFRCA CGK LEST + DKDGE+YCK CY
Sbjct: 120 CPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCY 172
>ref|NP_001073117.1| cysteine-rich protein 2 [Bos taurus].
Length = 208
Score = 95.9 bits (237), Expect = 8e-20
Identities = 59/176 (33%), Positives = 76/176 (43%), Gaps = 13/176 (7%)
Frame = +2
Query: 116 RCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXXXXXXXXXX 295
+C C KTVYFAE+V G +H+ C C C K L A H + +C
Sbjct: 4 KCPKCDKTVYFAEKVSSLGKDWHRFCLRCEHCSKTLTPGGHAEHDGKPFCHKPCYATLFG 63
Query: 296 XXXXXXXXXXTL-----SMDKGESLG------IKHEETPGHRPTTNPN-ASKFAQKIGGS 439
+ S +K + G + EE P P+ AS G
Sbjct: 64 PKGVNIGGAGSYIYEKPSAEKPQVTGPIEVPVARTEERKASGPPKGPSKASSVTTFTGEP 123
Query: 440 ERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYC-KGCY 604
CPRC++ VY AEKV GK WH+ C RC +CGK L A+ DG+ YC K CY
Sbjct: 124 NMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCY 179
Score = 61.2 bits (147), Expect = 2e-09
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 437 SERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYC-KGCY 604
+ +CP+C + VY AEKV GK WH+ C RC C K L A+ DG+ +C K CY
Sbjct: 2 ASKCPKCDKTVYFAEKVSSLGKDWHRFCLRCEHCSKTLTPGGHAEHDGKPFCHKPCY 58
>ref|NP_001179618.1| cysteine-rich protein 3 [Bos taurus].
Length = 204
Score = 72.8 bits (177), Expect = 8e-13
Identities = 51/187 (27%), Positives = 73/187 (39%), Gaps = 25/187 (13%)
Frame = +2
Query: 119 CGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXXXXXXXXXXX 298
C CQ+ V+FAE+V G ++H C C C L A H YC
Sbjct: 5 CPRCQQPVFFAEKVSSLGKNWHPFCLKCEHCHSVLSPGGHAEHNGRPYCHKPCYG----- 59
Query: 299 XXXXXXXXXTLSMDKGESLG-----IKHEETPGHRPTTNPNASKFAQK------------ 427
L +G ++G + TP T+ + S F+
Sbjct: 60 ---------ALFGPRGVNIGGVGSYLYKPPTPTPASITHLSPSSFSPPRPRTGLPQGKKS 110
Query: 428 -------IGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEI 586
G + CP C + VY AE V+ G++WH+ C RC +C K L + + A+ DG
Sbjct: 111 PPHMKTFTGETSLCPGCEEPVYFAETVMSLGRNWHRPCLRCQRCRKTLTAGSHAEHDGAP 170
Query: 587 YCK-GCY 604
YC CY
Sbjct: 171 YCHIPCY 177
>ref|XP_002697300.1| PREDICTED: cysteine-rich protein 3-like [Bos taurus].
Length = 204
Score = 72.8 bits (177), Expect = 8e-13
Identities = 51/187 (27%), Positives = 73/187 (39%), Gaps = 25/187 (13%)
Frame = +2
Query: 119 CGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXXXXXXXXXXX 298
C CQ+ V+FAE+V G ++H C C C L A H YC
Sbjct: 5 CPRCQQPVFFAEKVSSLGKNWHPFCLKCEHCHSVLSPGGHAEHNGRPYCHKPCYG----- 59
Query: 299 XXXXXXXXXTLSMDKGESLG-----IKHEETPGHRPTTNPNASKFAQK------------ 427
L +G ++G + TP T+ + S F+
Sbjct: 60 ---------ALFGPRGVNIGGVGSYLYKPPTPTPASITHLSPSSFSPPRPRTGLPQGKKS 110
Query: 428 -------IGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEI 586
G + CP C + VY AE V+ G++WH+ C RC +C K L + + A+ DG
Sbjct: 111 PPHMKTFTGETSLCPGCEEPVYFAETVMSLGRNWHRPCLRCQRCRKTLTAGSHAEHDGAP 170
Query: 587 YCK-GCY 604
YC CY
Sbjct: 171 YCHIPCY 177
>ref|NP_001020520.1| cysteine-rich protein 1 [Bos taurus].
Length = 77
Score = 65.1 bits (157), Expect = 2e-10
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +2
Query: 443 RCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCK-GCY 604
+CP+CS+ VY AE+V GK WH+ C +C KCGK L S A+ +G+ YC CY
Sbjct: 3 KCPKCSKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCY 57
>ref|XP_002687965.1| PREDICTED: microtubule associated monoxygenase, calponin and LIM
domain containing 3 [Bos taurus].
Length = 1781
Score = 57.8 bits (138), Expect = 3e-08
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +2
Query: 413 KFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLAD--KDGEI 586
+F Q +GGS+ C C + VY E++ GK +H+SCF+C C L + A +DG+
Sbjct: 760 EFPQNLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEHCATTLRLSAYAYALEDGKF 819
Query: 587 YCKGCY 604
YCK Y
Sbjct: 820 YCKPHY 825
>ref|XP_002704520.1| PREDICTED: microtubule associated monoxygenase, calponin and LIM
domain containing 3 [Bos taurus].
Length = 1960
Score = 57.8 bits (138), Expect = 3e-08
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +2
Query: 413 KFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLAD--KDGEI 586
+F Q +GGS+ C C + VY E++ GK +H+SCF+C C L + A +DG+
Sbjct: 753 EFPQNLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEHCATTLRLSAYAYALEDGKF 812
Query: 587 YCKGCY 604
YCK Y
Sbjct: 813 YCKPHY 818
>ref|XP_002693097.1| PREDICTED: microtubule associated monoxygenase, calponin and LIM
domain containing 2 [Bos taurus].
Length = 1122
Score = 53.1 bits (126), Expect = 6e-07
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Frame = +2
Query: 383 HRPTTNPNA-------SKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCG 541
HRP T + F +GGS+ C C + VY E++ G+ +H+ CFRC+ C
Sbjct: 972 HRPKTQATSPDLESVRKTFPLNVGGSDTCYFCKKRVYVMERLSAEGRFFHRECFRCSVCA 1031
Query: 542 KGLESTTLA-DKD-GEIYCK 595
L T A D D G+ +CK
Sbjct: 1032 TTLHLATYAFDVDEGKFFCK 1051
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,516,597
Number of extensions: 1734425
Number of successful extensions: 11985
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 11868
Number of HSP's successfully gapped: 17
Length of query: 501
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 395
Effective length of database: 14,174,046
Effective search space: 5598748170
Effective search space used: 5598748170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012457
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012457
(1503 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848609.1| PREDICTED: similar to Cysteine and glycine-rich... 311 8e-85
Alignment gi|XP_856542.1| PREDICTED: similar to Cysteine and glycine-rich... 293 3e-79
Alignment gi|XP_865526.1| PREDICTED: similar to Cysteine and glycine-rich... 221 1e-57
Alignment gi|XP_852328.1| PREDICTED: similar to Cysteine and glycine-rich... 217 2e-56
Alignment gi|XP_865543.1| PREDICTED: similar to Cysteine and glycine-rich... 213 3e-55
Alignment gi|XP_532632.2| PREDICTED: similar to Cysteine and glycine-rich... 184 3e-46
Alignment gi|XP_865506.1| PREDICTED: similar to Cysteine and glycine-rich... 110 3e-24
Alignment gi|XP_865472.1| PREDICTED: similar to Cysteine and glycine-rich... 110 5e-24
Alignment gi|XP_855529.1| PREDICTED: similar to LIM only protein HLP [Can... 85 2e-16
Alignment gi|XP_538933.2| PREDICTED: similar to cysteine-rich protein 3 i... 77 4e-14
>ref|XP_848609.1| PREDICTED: similar to Cysteine and glycine-rich protein 1
(Cysteine-rich protein 1) (CRP1) (CRP) isoform 1 [Canis
familiaris].
Length = 203
Score = 311 bits (798), Expect = 8e-85
Identities = 153/203 (75%), Positives = 155/203 (76%), Gaps = 10/203 (4%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGGK+CGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYC
Sbjct: 1 MPNWGGGKKCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEE----------TPGHRPTTNPNASKFA 421
TLSMDKGESLGIKHE+ T GHRPTTNPNASKFA
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLSMDKGESLGIKHEDPLTTRPFPRRTLGHRPTTNPNASKFA 120
Query: 422 QKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGC 601
QKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGC
Sbjct: 121 QKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGC 180
Query: 602 YXXXXXXXXXXXXXXXXXLVHSE 670
Y LVHSE
Sbjct: 181 YAKNFGPKGFGFGQGAGALVHSE 203
>ref|XP_856542.1| PREDICTED: similar to Cysteine and glycine-rich protein 1
(Cysteine-rich protein 1) (CRP1) (CRP) isoform 2 [Canis
familiaris].
Length = 200
Score = 293 bits (750), Expect = 3e-79
Identities = 147/202 (72%), Positives = 150/202 (74%), Gaps = 9/202 (4%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGGK+CGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYC
Sbjct: 1 MPNWGGGKKCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKH---------EETPGHRPTTNPNASKFAQ 424
TLSMDKGE G K+ +E P RPTTNPNASKFAQ
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLSMDKGE--GPKNSSVHGRLCSDEKPQPRPTTNPNASKFAQ 118
Query: 425 KIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY 604
KIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY
Sbjct: 119 KIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY 178
Query: 605 XXXXXXXXXXXXXXXXXLVHSE 670
LVHSE
Sbjct: 179 AKNFGPKGFGFGQGAGALVHSE 200
>ref|XP_865526.1| PREDICTED: similar to Cysteine and glycine-rich protein 3
(Cysteine-rich protein 3) (CRP3) (LIM domain protein,
cardiac) (Muscle LIM protein) isoform 4 [Canis
familiaris].
Length = 193
Score = 221 bits (563), Expect = 1e-57
Identities = 100/171 (58%), Positives = 115/171 (67%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGG +CG C+KTVY AEE+QC G SFHK+CF CM C+K LDSTTVA H EIYC
Sbjct: 1 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 451
LS D GE LG+ T H+P+T N SKF K G SE+CP
Sbjct: 61 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLHALLTSPHQPSTTSNPSKFTAKFGESEKCP 120
Query: 452 RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY 604
RC ++VYAAEKV+G GK WHK+CFRCA CGK LEST + DKDGE+YCK CY
Sbjct: 121 RCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCY 171
>ref|XP_852328.1| PREDICTED: similar to Cysteine and glycine-rich protein 3
(Cysteine-rich protein 3) (CRP3) (LIM domain protein,
cardiac) (Muscle LIM protein) isoform 1 [Canis
familiaris].
Length = 194
Score = 217 bits (553), Expect = 2e-56
Identities = 99/172 (57%), Positives = 116/172 (67%), Gaps = 1/172 (0%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGG +CG C+KTVY AEE+QC G SFHK+CF CM C+K LDSTTVA H EIYC
Sbjct: 1 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGH-RPTTNPNASKFAQKIGGSERC 448
LS D GE LG++ +++P R T N SKF K G SE+C
Sbjct: 61 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSATTSNPSKFTAKFGESEKC 120
Query: 449 PRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY 604
PRC ++VYAAEKV+G GK WHK+CFRCA CGK LEST + DKDGE+YCK CY
Sbjct: 121 PRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCY 172
>ref|XP_865543.1| PREDICTED: similar to Cysteine and glycine-rich protein 3
(Cysteine-rich protein 3) (CRP3) (LIM domain protein,
cardiac) (Muscle LIM protein) isoform 5 [Canis
familiaris].
Length = 195
Score = 213 bits (543), Expect = 3e-55
Identities = 99/173 (57%), Positives = 113/173 (65%), Gaps = 2/173 (1%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGG +CG C+KTVY AEE+QC G SFHK+CF CM C+K LDSTTVA H EIYC
Sbjct: 1 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGH--RPTTNPNASKFAQKIGGSER 445
LS D GE LG++ E R T N SKF K G SE+
Sbjct: 61 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQPAEASPKPARSATTSNPSKFTAKFGESEK 120
Query: 446 CPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY 604
CPRC ++VYAAEKV+G GK WHK+CFRCA CGK LEST + DKDGE+YCK CY
Sbjct: 121 CPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCY 173
>ref|XP_532632.2| PREDICTED: similar to Cysteine and glycine-rich protein 2
(Cysteine-rich protein 2) (CRP2) (Smooth muscle cell LIM
protein) (SmLIM) [Canis familiaris].
Length = 278
Score = 184 bits (466), Expect = 3e-46
Identities = 96/188 (51%), Positives = 112/188 (59%), Gaps = 1/188 (0%)
Frame = +2
Query: 110 GKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXXXXXXXX 289
G+R C T+ V F+ + +VC+KNLDSTTVA+H EEIYC
Sbjct: 97 GQRIRACSHTILSQSPV------FNFTDLPRVVCRKNLDSTTVAIHDEEIYCRSCYGKKY 150
Query: 290 XXXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCPRCSQAV 469
TLS D+GE LGIK E P HRPTTNPN SKFAQK GG+E+C RC AV
Sbjct: 151 GPKGYGYGQGAGTLSTDRGERLGIKPESAPPHRPTTNPNTSKFAQKFGGAEKCSRCGDAV 210
Query: 470 YAAEKVIGAGK-SWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYXXXXXXXXXXXXXX 646
YAAEK+IGAGK W K+ FRCAKCGK LESTTL +K+GEIYCKGCY
Sbjct: 211 YAAEKIIGAGKVGWKKTPFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQG 270
Query: 647 XXXLVHSE 670
LVH++
Sbjct: 271 AGALVHAQ 278
>ref|XP_865506.1| PREDICTED: similar to Cysteine and glycine-rich protein 3
(Cysteine-rich protein 3) (CRP3) (LIM domain protein,
cardiac) (Muscle LIM protein) isoform 3 [Canis
familiaris].
Length = 109
Score = 110 bits (276), Expect = 3e-24
Identities = 52/102 (50%), Positives = 61/102 (59%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGG +CG C+KTVY AEE+QC G SFHK+CF CM C+K LDSTTVA H EIYC
Sbjct: 1 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPTT 397
LS D GE LG++ + G RP +
Sbjct: 61 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQHL-GTRPVS 101
Score = 70.5 bits (171), Expect = 4e-12
Identities = 29/58 (50%), Positives = 39/58 (67%)
Frame = +2
Query: 431 GGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY 604
GG +C C + VY AE++ G+S+HK+CF C C K L+STT+A + EIYCK CY
Sbjct: 5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCY 62
>ref|XP_865472.1| PREDICTED: similar to Cysteine and glycine-rich protein 3
(Cysteine-rich protein 3) (CRP3) (LIM domain protein,
cardiac) (Muscle LIM protein) isoform 2 [Canis
familiaris].
Length = 99
Score = 110 bits (274), Expect = 5e-24
Identities = 49/94 (52%), Positives = 58/94 (61%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGG +CG C+KTVY AEE+QC G SFHK+CF CM C+K LDSTTVA H EIYC
Sbjct: 1 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEE 373
LS D GE LG++ ++
Sbjct: 61 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQ 94
Score = 70.5 bits (171), Expect = 4e-12
Identities = 29/58 (50%), Positives = 39/58 (67%)
Frame = +2
Query: 431 GGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY 604
GG +C C + VY AE++ G+S+HK+CF C C K L+STT+A + EIYCK CY
Sbjct: 5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCY 62
>ref|XP_855529.1| PREDICTED: similar to LIM only protein HLP [Canis familiaris].
Length = 292
Score = 85.1 bits (209), Expect = 2e-16
Identities = 53/165 (32%), Positives = 68/165 (41%), Gaps = 13/165 (7%)
Frame = +2
Query: 149 AEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXXXXXXXXXXXXXXXXXXXXT 328
AE+V G +HK C C C K L A H + +C +
Sbjct: 99 AEKVSSLGKDWHKFCLKCERCNKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGS 158
Query: 329 LSMDKGESLG-----------IKHEETPGHRPTTNPN-ASKFAQKIGGSERCPRCSQAVY 472
DK + G ++ EE P P+ AS G CPRC++ VY
Sbjct: 159 YIYDKPSAEGPQVTGPIEVPVVRAEERKASGPPKGPSKASSVTTFTGEPNMCPRCNKRVY 218
Query: 473 AAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYC-KGCY 604
AEKV GK WH+ C RC +CGK L A+ DG+ YC K CY
Sbjct: 219 FAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCY 263
>ref|XP_538933.2| PREDICTED: similar to cysteine-rich protein 3 isoform TLP-A [Canis
familiaris].
Length = 204
Score = 77.0 bits (188), Expect = 4e-14
Identities = 49/173 (28%), Positives = 71/173 (41%), Gaps = 11/173 (6%)
Frame = +2
Query: 119 CGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXXXXXXXXXXX 298
C CQ+ V+FAE+V G ++H+ C C C L A H YC
Sbjct: 5 CPRCQQPVFFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGALFGP 64
Query: 299 XXXXXXXXXTL-----SMDKGESLGIKHEETPGHRPTTN-PNASKFAQKI----GGSERC 448
+ ++ + + RP T P K + G + C
Sbjct: 65 RGVNIGGVGSYLYNSPTLTPASTTPLSPSSFSPPRPRTGLPQGKKSPLHMKTFTGETSLC 124
Query: 449 PRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCK-GCY 604
P C + VY AEKV+ G++WH+ C RC +C K L + + A+ DG YC CY
Sbjct: 125 PGCEEPVYFAEKVMSLGRNWHRPCLRCQRCRKTLTAGSHAEHDGVPYCHIPCY 177
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,006,160
Number of extensions: 1779013
Number of successful extensions: 12203
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 12031
Number of HSP's successfully gapped: 22
Length of query: 501
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 394
Effective length of database: 15,307,552
Effective search space: 6031175488
Effective search space used: 6031175488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012457
(1503 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357724.1| PREDICTED: cysteine and glycine-rich protein... 326 2e-89
Alignment gi|XP_003357725.1| PREDICTED: cysteine and glycine-rich protein... 311 6e-85
Alignment gi|XP_003357726.1| PREDICTED: cysteine and glycine-rich protein... 308 5e-84
Alignment gi|NP_001165839.1| cysteine and glycine-rich protein 3 [Sus scr... 216 2e-56
Alignment gi|XP_001926813.1| PREDICTED: cysteine-rich protein 3-like [Sus... 71 2e-12
Alignment gi|XP_003355661.1| PREDICTED: LOW QUALITY PROTEIN: protein MICA... 57 2e-08
Alignment gi|NP_999111.1| four and a half LIM domains protein 3 [Sus scro... 51 1e-06
Alignment gi|XP_003127846.1| PREDICTED: four and a half LIM domains prote... 50 3e-06
Alignment gi|XP_003124907.2| PREDICTED: four and a half LIM domains prote... 50 3e-06
Alignment gi|NP_001108148.1| EPLIN-b [Sus scrofa]. 49 6e-06
>ref|XP_003357724.1| PREDICTED: cysteine and glycine-rich protein 1-like isoform 1 [Sus
scrofa].
Length = 193
Score = 326 bits (835), Expect = 2e-89
Identities = 156/193 (80%), Positives = 156/193 (80%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYC
Sbjct: 1 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 451
TLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 120
Query: 452 RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYXXXXXXXXX 631
RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY
Sbjct: 121 RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKGF 180
Query: 632 XXXXXXXXLVHSE 670
LVHSE
Sbjct: 181 GFGQGAGALVHSE 193
>ref|XP_003357725.1| PREDICTED: cysteine and glycine-rich protein 1-like isoform 2 [Sus
scrofa].
Length = 220
Score = 311 bits (797), Expect = 6e-85
Identities = 156/220 (70%), Positives = 156/220 (70%), Gaps = 27/220 (12%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYC
Sbjct: 1 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 451
TLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 120
Query: 452 RCSQAVYAAEKVIGAGK---------------------------SWHKSCFRCAKCGKGL 550
RCSQAVYAAEKVIGAGK SWHKSCFRCAKCGKGL
Sbjct: 121 RCSQAVYAAEKVIGAGKSAGPSVCQAPATPSAAPHEGDSASPLQSWHKSCFRCAKCGKGL 180
Query: 551 ESTTLADKDGEIYCKGCYXXXXXXXXXXXXXXXXXLVHSE 670
ESTTLADKDGEIYCKGCY LVHSE
Sbjct: 181 ESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALVHSE 220
>ref|XP_003357726.1| PREDICTED: cysteine and glycine-rich protein 1-like isoform 3 [Sus
scrofa].
Length = 187
Score = 308 bits (789), Expect = 5e-84
Identities = 150/193 (77%), Positives = 150/193 (77%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYC
Sbjct: 1 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 451
TLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 120
Query: 452 RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYXXXXXXXXX 631
RCSQAVYAAE KSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY
Sbjct: 121 RCSQAVYAAE------KSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKGF 174
Query: 632 XXXXXXXXLVHSE 670
LVHSE
Sbjct: 175 GFGQGAGALVHSE 187
>ref|NP_001165839.1| cysteine and glycine-rich protein 3 [Sus scrofa].
Length = 194
Score = 216 bits (551), Expect = 2e-56
Identities = 99/172 (57%), Positives = 115/172 (66%), Gaps = 1/172 (0%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGG +CG C KTVY AEE+QC G SFHK+CF CM C+K LDSTTVA H EIYC
Sbjct: 1 MPNWGGGAKCGACDKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGH-RPTTNPNASKFAQKIGGSERC 448
LS D GE LG++ +++P R T N SKF K G SE+C
Sbjct: 61 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSATTSNPSKFTAKFGESEKC 120
Query: 449 PRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY 604
PRC ++VYAAEKV+G GK WHK+CFRCA CGK LEST + DKDGE+YCK CY
Sbjct: 121 PRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCY 172
>ref|XP_001926813.1| PREDICTED: cysteine-rich protein 3-like [Sus scrofa].
Length = 204
Score = 70.9 bits (172), Expect = 2e-12
Identities = 49/174 (28%), Positives = 68/174 (39%), Gaps = 12/174 (6%)
Frame = +2
Query: 119 CGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXXXXXXXXXXX 298
C C + V+FAE+V G ++H+ C C C L A H YC
Sbjct: 5 CPRCLQPVFFAEKVSSLGKNWHRFCLKCEHCHNVLSPGGHAEHNGRPYCHKPCYGVLFGP 64
Query: 299 XXXXXXXXXTLSMDKGES-------LGIKHEETPGHRPTTNPNASKFAQKI----GGSER 445
+ L +P RP P K + G +
Sbjct: 65 RGVNIGGVGSYLYRSPAPIPASITPLSPSSFSSPRPRPGL-PQGKKSPPYMKTFTGETSL 123
Query: 446 CPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCK-GCY 604
CP C + VY AEKV+ G++WH+ C RC +C K L + + A+ DG YC CY
Sbjct: 124 CPGCEEPVYFAEKVMSLGRNWHRPCLRCQRCRKTLTAGSHAEHDGVPYCHIPCY 177
>ref|XP_003355661.1| PREDICTED: LOW QUALITY PROTEIN: protein MICAL-3 [Sus scrofa].
Length = 1951
Score = 57.4 bits (137), Expect = 2e-08
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +2
Query: 413 KFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLAD--KDGEI 586
+F Q +GGS+ C C + VY E++ GK +H+SCF+C C L + A +DG+
Sbjct: 755 EFPQNLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDLEDGKF 814
Query: 587 YCKGCY 604
YCK Y
Sbjct: 815 YCKPHY 820
Score = 48.9 bits (115), Expect = 7e-06
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 98 NWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEE--IYC 265
N GG C CQK VY E + EG FH+SCF C C L + A E+ YC
Sbjct: 759 NLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDLEDGKFYC 816
>ref|NP_999111.1| four and a half LIM domains protein 3 [Sus scrofa].
Length = 280
Score = 51.2 bits (121), Expect = 1e-06
Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 23/185 (12%)
Frame = +2
Query: 116 RCGVCQKTVY-FAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXXXXXXXXX 292
+C C++TV + +++ G ++H+ CFLC C++ L S + YC
Sbjct: 100 QCSACRETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYC-----VPCY 154
Query: 293 XXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPT---------------TNPNASKFAQK 427
+ ++ +G G+ + + P HR T+ + +
Sbjct: 155 ENKFAPRCARCSKTLTQG---GVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVA 211
Query: 428 IGGSERCPRCSQAVYAAEKVIGAGK-------SWHKSCFRCAKCGKGLESTTLADKDGEI 586
G P+CS +G GK WH SCF CA+C L ++
Sbjct: 212 CFGELFAPKCSSCKRPITG-LGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQV 270
Query: 587 YCKGC 601
C+GC
Sbjct: 271 LCQGC 275
>ref|XP_003127846.1| PREDICTED: four and a half LIM domains protein 3-like [Sus scrofa].
Length = 280
Score = 50.1 bits (118), Expect = 3e-06
Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 23/185 (12%)
Frame = +2
Query: 116 RCGVCQKTVY-FAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXXXXXXXXX 292
+C C +TV + +++ G ++H+ CFLC C++ L S + YC
Sbjct: 100 QCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSCSFVPDKGAHYC-----VPCY 154
Query: 293 XXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPT---------------TNPNASKFAQK 427
+ ++ +G G+ + + P HR T+ + +
Sbjct: 155 ENKFAPRCARCSKTLTQG---GVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDDDPYCVA 211
Query: 428 IGGSERCPRCSQAVYAAEKVIGAGK-------SWHKSCFRCAKCGKGLESTTLADKDGEI 586
G P+CS +G GK WH SCF CA+C L ++
Sbjct: 212 CFGELFAPKCSSCKRPITG-LGGGKYVSFEDRHWHHSCFSCARCSTSLVGQGFVPDGDQV 270
Query: 587 YCKGC 601
C+GC
Sbjct: 271 LCQGC 275
>ref|XP_003124907.2| PREDICTED: four and a half LIM domains protein 2-like isoform 2
[Sus scrofa].
Length = 256
Score = 50.1 bits (118), Expect = 3e-06
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 437 SERCPRCSQAVY-AAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY 604
S RC C +A+ K+ G SWH++CF C +C + + + + KDG+ +C CY
Sbjct: 98 SSRCQECRKAIMPGTRKMEYKGSSWHETCFTCHRCQQPIGTKSFIPKDGQNFCVPCY 154
>ref|NP_001108148.1| EPLIN-b [Sus scrofa].
Length = 756
Score = 49.3 bits (116), Expect = 6e-06
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +2
Query: 440 ERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCK 595
E C C + VY E+++ + +H SCFRC+ C L T A G IYCK
Sbjct: 384 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCK 435
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,290,616
Number of extensions: 1127925
Number of successful extensions: 8024
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 7931
Number of HSP's successfully gapped: 13
Length of query: 501
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 398
Effective length of database: 8,779,541
Effective search space: 3494257318
Effective search space used: 3494257318
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012457
(1503 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031817.1| cysteine and glycine-rich protein 1 [Mus muscul... 319 3e-87
Alignment gi|NP_031818.3| cysteine and glycine-rich protein 2 [Mus muscul... 256 2e-68
Alignment gi|NP_001185770.1| cysteine and glycine-rich protein 3 [Mus mus... 218 1e-56
Alignment gi|NP_038836.1| cysteine and glycine-rich protein 3 [Mus muscul... 218 1e-56
Alignment gi|NP_077185.1| cysteine-rich protein 2 [Mus musculus]. 96 1e-19
Alignment gi|NP_858050.1| cysteine-rich protein 3 isoform TLP-A [Mus musc... 75 1e-13
Alignment gi|NP_444480.1| cysteine-rich protein 3 isoform TLP-B [Mus musc... 75 1e-13
Alignment gi|NP_031789.1| cysteine-rich protein 1 [Mus musculus]. 64 4e-10
Alignment gi|NP_075550.2| LIM domain and actin-binding protein 1 isoform ... 52 2e-06
Alignment gi|NP_001107017.1| LIM domain and actin-binding protein 1 isofo... 52 2e-06
>ref|NP_031817.1| cysteine and glycine-rich protein 1 [Mus musculus].
Length = 193
Score = 319 bits (818), Expect = 3e-87
Identities = 152/193 (78%), Positives = 154/193 (79%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGGK+CGVCQKTVYFAEEVQCEG+SFHKSCFLCMVCKKNLDSTTVAVHGEEIYC
Sbjct: 1 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 451
TLS DKGESLGIKHEE PGHRPTTNPNASKFAQKIGGSERCP
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP 120
Query: 452 RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYXXXXXXXXX 631
RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY
Sbjct: 121 RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKGF 180
Query: 632 XXXXXXXXLVHSE 670
LVHSE
Sbjct: 181 GFGQGAGALVHSE 193
>ref|NP_031818.3| cysteine and glycine-rich protein 2 [Mus musculus].
Length = 193
Score = 256 bits (655), Expect = 2e-68
Identities = 117/193 (60%), Positives = 134/193 (69%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MP WGGG +CG C +TVY AEEVQC+G SFH+ CFLCMVC+KNLDSTTVA+H EEIYC
Sbjct: 1 MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKS 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 451
TL+MD+GE LGIK E HRPTTNPN SKFAQK GG+E+C
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTNPNTSKFAQKYGGAEKCS 120
Query: 452 RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYXXXXXXXXX 631
RC +VYAAEK+IGAGK WHK+CFRCAKCGK LESTTL +K+GEIYCKGCY
Sbjct: 121 RCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGF 180
Query: 632 XXXXXXXXLVHSE 670
LVH++
Sbjct: 181 GYGQGAGALVHAQ 193
>ref|NP_001185770.1| cysteine and glycine-rich protein 3 [Mus musculus].
Length = 194
Score = 218 bits (554), Expect = 1e-56
Identities = 99/172 (57%), Positives = 117/172 (68%), Gaps = 1/172 (0%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGG +CG C+KTVY AEE+QC G SFHK+CF CM C+K LDSTTVA H EIYC
Sbjct: 1 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGH-RPTTNPNASKFAQKIGGSERC 448
LS D GE LG++ +++P R T N SKF+ K G SE+C
Sbjct: 61 CYGRRYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSPKPARAATTSNPSKFSAKFGESEKC 120
Query: 449 PRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY 604
PRC ++VYAAEKV+G GK WHK+CFRCA CGK LEST + DKDGE+YCK CY
Sbjct: 121 PRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCY 172
>ref|NP_038836.1| cysteine and glycine-rich protein 3 [Mus musculus].
Length = 194
Score = 218 bits (554), Expect = 1e-56
Identities = 99/172 (57%), Positives = 117/172 (68%), Gaps = 1/172 (0%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGG +CG C+KTVY AEE+QC G SFHK+CF CM C+K LDSTTVA H EIYC
Sbjct: 1 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGH-RPTTNPNASKFAQKIGGSERC 448
LS D GE LG++ +++P R T N SKF+ K G SE+C
Sbjct: 61 CYGRRYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSPKPARAATTSNPSKFSAKFGESEKC 120
Query: 449 PRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY 604
PRC ++VYAAEKV+G GK WHK+CFRCA CGK LEST + DKDGE+YCK CY
Sbjct: 121 PRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCY 172
>ref|NP_077185.1| cysteine-rich protein 2 [Mus musculus].
Length = 208
Score = 95.5 bits (236), Expect = 1e-19
Identities = 57/176 (32%), Positives = 75/176 (42%), Gaps = 13/176 (7%)
Frame = +2
Query: 116 RCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXXXXXXXXXX 295
+C C KTVYFAE+V G +HK C C C K L A H + +C
Sbjct: 4 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCNKTLTPGGHAEHDGKPFCHKPCYATLFG 63
Query: 296 XXXXXXXXXXTLSMDKGESLG-----------IKHEETPGHRPTTNPN-ASKFAQKIGGS 439
+ +K ++ ++ EE P P+ AS G
Sbjct: 64 PKGVNIGGAGSYIYEKPQTEAPQVTGPIEVPVVRTEERKTSGPPKGPSKASSVTTFTGEP 123
Query: 440 ERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYC-KGCY 604
CPRC++ VY AEKV GK WH+ C RC +C K L A+ DG+ YC K CY
Sbjct: 124 NMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCSKTLTPGGHAEHDGQPYCHKPCY 179
Score = 62.4 bits (150), Expect = 9e-10
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 437 SERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYC-KGCY 604
+ +CP+C + VY AEKV GK WHK C +C +C K L A+ DG+ +C K CY
Sbjct: 2 ASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCNKTLTPGGHAEHDGKPFCHKPCY 58
>ref|NP_858050.1| cysteine-rich protein 3 isoform TLP-A [Mus musculus].
Length = 204
Score = 75.5 bits (184), Expect = 1e-13
Identities = 48/173 (27%), Positives = 68/173 (39%), Gaps = 11/173 (6%)
Frame = +2
Query: 119 CGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXXXXXXXXXXX 298
C CQ+ VYFAE+V G ++H+ C C C L A H YC
Sbjct: 5 CPRCQQPVYFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGALFGP 64
Query: 299 XXXXXXXXXTLSMD-----KGESLGIKHEETPGHRPTTNPNASK-----FAQKIGGSERC 448
+ + + RP T + +K G + C
Sbjct: 65 RGVNIGGVGCYLYNLPTPPPASRISLSPSNFSPPRPRTGLSRAKKRPPYLKTFTGETSLC 124
Query: 449 PRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCK-GCY 604
P C V+ AEKV+ G++WH+ C RC +C K L + + A+ DG YC CY
Sbjct: 125 PGCGDPVFFAEKVMSLGRNWHRPCLRCQRCRKTLTAGSHAEHDGMPYCHIPCY 177
>ref|NP_444480.1| cysteine-rich protein 3 isoform TLP-B [Mus musculus].
Length = 205
Score = 75.5 bits (184), Expect = 1e-13
Identities = 48/173 (27%), Positives = 68/173 (39%), Gaps = 11/173 (6%)
Frame = +2
Query: 119 CGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXXXXXXXXXXX 298
C CQ+ VYFAE+V G ++H+ C C C L A H YC
Sbjct: 5 CPRCQQPVYFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGALFGP 64
Query: 299 XXXXXXXXXTLSMD-----KGESLGIKHEETPGHRPTTNPNASK-----FAQKIGGSERC 448
+ + + RP T + +K G + C
Sbjct: 65 RGVNIGGVGCYLYNLPTPPPASRISLSPSNFSPPRPRTGLSRAKKRPPYLKTFTGETSLC 124
Query: 449 PRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCK-GCY 604
P C V+ AEKV+ G++WH+ C RC +C K L + + A+ DG YC CY
Sbjct: 125 PGCGDPVFFAEKVMSLGRNWHRPCLRCQRCRKTLTAGSHAEHDGMPYCHIPCY 177
>ref|NP_031789.1| cysteine-rich protein 1 [Mus musculus].
Length = 77
Score = 63.5 bits (153), Expect = 4e-10
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +2
Query: 443 RCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCK-GCY 604
+CP+C + VY AE+V GK WH+ C +C KCGK L S A+ +G+ YC CY
Sbjct: 3 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCY 57
>ref|NP_075550.2| LIM domain and actin-binding protein 1 isoform b [Mus musculus].
Length = 593
Score = 51.6 bits (122), Expect = 2e-06
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = +2
Query: 389 PTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLA 568
P ++P+ + + E C C + VY E+++ + +H SCFRC+ C L T A
Sbjct: 209 PESSPSKTAKKFQAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYA 268
Query: 569 DKDGEIYCK 595
G IYCK
Sbjct: 269 SLHGRIYCK 277
>ref|NP_001107017.1| LIM domain and actin-binding protein 1 isoform a [Mus musculus].
Length = 753
Score = 51.6 bits (122), Expect = 2e-06
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = +2
Query: 389 PTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLA 568
P ++P+ + + E C C + VY E+++ + +H SCFRC+ C L T A
Sbjct: 369 PESSPSKTAKKFQAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYA 428
Query: 569 DKDGEIYCK 595
G IYCK
Sbjct: 429 SLHGRIYCK 437
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,917,129
Number of extensions: 1406891
Number of successful extensions: 9310
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 9163
Number of HSP's successfully gapped: 17
Length of query: 501
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 395
Effective length of database: 12,433,743
Effective search space: 4911328485
Effective search space used: 4911328485
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012457
(1503 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004069.1| cysteine and glycine-rich protein 1 isoform 1 [... 318 8e-87
Alignment gi|NP_001180501.1| cysteine and glycine-rich protein 1 isoform ... 318 8e-87
Alignment gi|NP_001180500.1| cysteine and glycine-rich protein 1 isoform ... 318 8e-87
Alignment gi|NP_001180499.1| cysteine and glycine-rich protein 1 isoform ... 300 2e-81
Alignment gi|NP_001312.1| cysteine and glycine-rich protein 2 [Homo sapie... 256 3e-68
Alignment gi|NP_001121128.1| cysteine and glycine-rich protein 3 [Homo sa... 217 2e-56
Alignment gi|NP_003467.1| cysteine and glycine-rich protein 3 [Homo sapie... 217 2e-56
Alignment gi|NP_001303.1| cysteine-rich protein 2 [Homo sapiens]. 99 1e-20
Alignment gi|NP_996805.2| cysteine-rich protein 3 [Homo sapiens]. 77 3e-14
Alignment gi|NP_001302.1| cysteine-rich protein 1 [Homo sapiens]. 64 4e-10
>ref|NP_004069.1| cysteine and glycine-rich protein 1 isoform 1 [Homo sapiens].
Length = 193
Score = 318 bits (815), Expect = 8e-87
Identities = 151/193 (78%), Positives = 154/193 (79%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGGK+CGVCQKTVYFAEEVQCEG+SFHKSCFLCMVCKKNLDSTTVAVHGEEIYC
Sbjct: 1 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 451
TLS DKGESLGIKHEE PGHRPTTNPNASKFAQKIGGSERCP
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP 120
Query: 452 RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYXXXXXXXXX 631
RCSQAVYAAEKVIGAGKSWHK+CFRCAKCGKGLESTTLADKDGEIYCKGCY
Sbjct: 121 RCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKGF 180
Query: 632 XXXXXXXXLVHSE 670
LVHSE
Sbjct: 181 GFGQGAGALVHSE 193
>ref|NP_001180501.1| cysteine and glycine-rich protein 1 isoform 1 [Homo sapiens].
Length = 193
Score = 318 bits (815), Expect = 8e-87
Identities = 151/193 (78%), Positives = 154/193 (79%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGGK+CGVCQKTVYFAEEVQCEG+SFHKSCFLCMVCKKNLDSTTVAVHGEEIYC
Sbjct: 1 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 451
TLS DKGESLGIKHEE PGHRPTTNPNASKFAQKIGGSERCP
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP 120
Query: 452 RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYXXXXXXXXX 631
RCSQAVYAAEKVIGAGKSWHK+CFRCAKCGKGLESTTLADKDGEIYCKGCY
Sbjct: 121 RCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKGF 180
Query: 632 XXXXXXXXLVHSE 670
LVHSE
Sbjct: 181 GFGQGAGALVHSE 193
>ref|NP_001180500.1| cysteine and glycine-rich protein 1 isoform 1 [Homo sapiens].
Length = 193
Score = 318 bits (815), Expect = 8e-87
Identities = 151/193 (78%), Positives = 154/193 (79%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGGK+CGVCQKTVYFAEEVQCEG+SFHKSCFLCMVCKKNLDSTTVAVHGEEIYC
Sbjct: 1 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 451
TLS DKGESLGIKHEE PGHRPTTNPNASKFAQKIGGSERCP
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP 120
Query: 452 RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYXXXXXXXXX 631
RCSQAVYAAEKVIGAGKSWHK+CFRCAKCGKGLESTTLADKDGEIYCKGCY
Sbjct: 121 RCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKGF 180
Query: 632 XXXXXXXXLVHSE 670
LVHSE
Sbjct: 181 GFGQGAGALVHSE 193
>ref|NP_001180499.1| cysteine and glycine-rich protein 1 isoform 3 [Homo sapiens].
Length = 187
Score = 300 bits (769), Expect = 2e-81
Identities = 145/193 (75%), Positives = 148/193 (76%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGGK+CGVCQKTVYFAEEVQCEG+SFHKSCFLCMVCKKNLDSTTVAVHGEEIYC
Sbjct: 1 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 451
TLS DKGESLGIKHEE PGHRPTTNPNASKFAQKIGGSERCP
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP 120
Query: 452 RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYXXXXXXXXX 631
RCSQAVYAAE KSWHK+CFRCAKCGKGLESTTLADKDGEIYCKGCY
Sbjct: 121 RCSQAVYAAE------KSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKGF 174
Query: 632 XXXXXXXXLVHSE 670
LVHSE
Sbjct: 175 GFGQGAGALVHSE 187
>ref|NP_001312.1| cysteine and glycine-rich protein 2 [Homo sapiens].
Length = 193
Score = 256 bits (655), Expect = 3e-68
Identities = 117/193 (60%), Positives = 134/193 (69%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MP WGGG +CG C +TVY AEEVQC+G SFH+ CFLCMVC+KNLDSTTVA+H EEIYC
Sbjct: 1 MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKS 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSERCP 451
TL+MD+GE LGIK E HRPTTNPN SKFAQK GG+E+C
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAEKCS 120
Query: 452 RCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYXXXXXXXXX 631
RC +VYAAEK+IGAGK WHK+CFRCAKCGK LESTTL +K+GEIYCKGCY
Sbjct: 121 RCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGF 180
Query: 632 XXXXXXXXLVHSE 670
LVH++
Sbjct: 181 GYGQGAGALVHAQ 193
>ref|NP_001121128.1| cysteine and glycine-rich protein 3 [Homo sapiens].
Length = 194
Score = 217 bits (553), Expect = 2e-56
Identities = 99/172 (57%), Positives = 116/172 (67%), Gaps = 1/172 (0%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGG +CG C+KTVY AEE+QC G SFHK+CF CM C+K LDSTTVA H EIYC
Sbjct: 1 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGH-RPTTNPNASKFAQKIGGSERC 448
LS D GE LG++ +++P R T N SKF K G SE+C
Sbjct: 61 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSVTTSNPSKFTAKFGESEKC 120
Query: 449 PRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY 604
PRC ++VYAAEKV+G GK WHK+CFRCA CGK LEST + DKDGE+YCK CY
Sbjct: 121 PRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCY 172
>ref|NP_003467.1| cysteine and glycine-rich protein 3 [Homo sapiens].
Length = 194
Score = 217 bits (553), Expect = 2e-56
Identities = 99/172 (57%), Positives = 116/172 (67%), Gaps = 1/172 (0%)
Frame = +2
Query: 92 MPNWGGGKRCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXX 271
MPNWGGG +CG C+KTVY AEE+QC G SFHK+CF CM C+K LDSTTVA H EIYC
Sbjct: 1 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV 60
Query: 272 XXXXXXXXXXXXXXXXXXTLSMDKGESLGIKHEETPGH-RPTTNPNASKFAQKIGGSERC 448
LS D GE LG++ +++P R T N SKF K G SE+C
Sbjct: 61 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSVTTSNPSKFTAKFGESEKC 120
Query: 449 PRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCY 604
PRC ++VYAAEKV+G GK WHK+CFRCA CGK LEST + DKDGE+YCK CY
Sbjct: 121 PRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCY 172
>ref|NP_001303.1| cysteine-rich protein 2 [Homo sapiens].
Length = 208
Score = 98.6 bits (244), Expect = 1e-20
Identities = 60/176 (34%), Positives = 75/176 (42%), Gaps = 13/176 (7%)
Frame = +2
Query: 116 RCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXXXXXXXXXX 295
+C C KTVYFAE+V G +HK C C C K L A H + +C
Sbjct: 4 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFG 63
Query: 296 XXXXXXXXXXTLSMDKGESLG-----------IKHEETPGHRPTTNPN-ASKFAQKIGGS 439
+ +K + G + EE P P+ AS G
Sbjct: 64 PKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFTGEP 123
Query: 440 ERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYC-KGCY 604
CPRCS+ VY AEKV GK WH+ C RC +CGK L A+ DG+ YC K CY
Sbjct: 124 NTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCY 179
Score = 62.4 bits (150), Expect = 1e-09
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 437 SERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYC-KGCY 604
+ +CP+C + VY AEKV GK WHK C +C +C K L A+ DG+ +C K CY
Sbjct: 2 ASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCY 58
>ref|NP_996805.2| cysteine-rich protein 3 [Homo sapiens].
Length = 204
Score = 77.4 bits (189), Expect = 3e-14
Identities = 53/187 (28%), Positives = 76/187 (40%), Gaps = 25/187 (13%)
Frame = +2
Query: 119 CGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCXXXXXXXXXXX 298
C CQ+ V+FAE+V G ++H+ C C C L A H YC
Sbjct: 5 CPRCQQPVFFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYG----- 59
Query: 299 XXXXXXXXXTLSMDKGESLG-----IKHEETPGHRPTTNPNASKFAQK------------ 427
L +G ++G + + TP TT + S F+
Sbjct: 60 ---------ALFGPRGVNIGGVGSYLYNPPTPSPGCTTPLSPSSFSPPRPRTGLPQGKKS 110
Query: 428 -------IGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEI 586
G + CP C + VY AEKV+ G++WH+ C RC +C K L + + A+ DG
Sbjct: 111 PPHMKTFTGETSLCPGCGEPVYFAEKVMSLGRNWHRPCLRCQRCHKTLTAGSHAEHDGVP 170
Query: 587 YCK-GCY 604
YC CY
Sbjct: 171 YCHVPCY 177
>ref|NP_001302.1| cysteine-rich protein 1 [Homo sapiens].
Length = 77
Score = 63.9 bits (154), Expect = 4e-10
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +2
Query: 443 RCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCK-GCY 604
+CP+C++ VY AE+V GK WH+ C +C KCGK L S A+ +G+ YC CY
Sbjct: 3 KCPKCNKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCY 57
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,535,071
Number of extensions: 1729932
Number of successful extensions: 12106
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 11938
Number of HSP's successfully gapped: 21
Length of query: 501
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 394
Effective length of database: 14,770,016
Effective search space: 5819386304
Effective search space used: 5819386304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012457
(1503 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 638 e-180
Sscrofa_Chr05 82 1e-12
>Sscrofa_Chr10
|| Length = 79102373
Score = 638 bits (322), Expect = e-180
Identities = 346/358 (96%)
Strand = Plus / Plus
Query: 595 aggatgctacgctaaaaacttcgggcccaagggctttggctttggacaaggggccggggc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28397165 aggatgctacgctaaaaacttcgggcccaagggctttggctttggacaaggggccggggc 28397224
Query: 655 cctggtccactctgagtgagccctacctgccccgctgcccatgcccacgcttctcatcac 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28397225 cctggtccactctgagtgagccctacctgccccgctgcccatgcccacgcttctcatcac 28397284
Query: 715 catcccccgcccggcagcctcgccacctccaggattcatcccttcagccctgcacacatc 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28397285 catcccccgcccggcagcctcgccacctccaggattcatcccttcagccctgcacacatc 28397344
Query: 775 actaaggacttgaacttgggtgtctggcttccctcgatctgggggtctgctggaggcccc 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28397345 actaaggacttgaacttgggtgtctggcttccctcgatctgggggtctgctggaggcccc 28397404
Query: 835 actcctcgaaggcactccccccttgcctgggaccagcaggaggcctcaggacttttgtcc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28397405 actcctcgaaggcactccccccttgcctgggaccagcaggaggcctcaggacttttgtcc 28397464
Query: 895 ccccaacannnnnnnnnnnnaggagagtcctcagcctcttgggctgggtgtctgtcat 952
|||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 28397465 ccccaacaccccccccccccaggagagtcctcagcctcttgggctgggtgtctgtcat 28397522
Score = 438 bits (221), Expect = e-120
Identities = 221/221 (100%)
Strand = Plus / Plus
Query: 1043 ccttctgatatcaggatgtggtctggccttcccaggcgtcgagctccctgtttgaggggg 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28397613 ccttctgatatcaggatgtggtctggccttcccaggcgtcgagctccctgtttgaggggg 28397672
Query: 1103 gccttgatgatgaaacagcccagcgacactggtgtgaggcctgggccctgagctagcggg 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28397673 gccttgatgatgaaacagcccagcgacactggtgtgaggcctgggccctgagctagcggg 28397732
Query: 1163 cagctcctgctcggctgggcgcaggccaggcccaggctctgtccttagcacgcctgctgg 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28397733 cagctcctgctcggctgggcgcaggccaggcccaggctctgtccttagcacgcctgctgg 28397792
Query: 1223 ccatcagcagtggagggaggcacatgcagcctttgtctgga 1263
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 28397793 ccatcagcagtggagggaggcacatgcagcctttgtctgga 28397833
Score = 321 bits (162), Expect = 6e-85
Identities = 168/170 (98%)
Strand = Plus / Plus
Query: 204 tggtctgtaagaagaatttggacagtaccaccgtagccgtgcacggcgaggagatctact 263
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28392657 tggtctgtaagaagaatctggacagtaccaccgtagccgtgcacggcgaggagatctact 28392716
Query: 264 gcaagtcctgttatggcaagaagtatggacccaagggctacggctacggacagggcgcgg 323
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 28392717 gcaagtcctgttatggcaagaagtatggacccaagggctacggttacggacagggcgcgg 28392776
Query: 324 gcacactgagcatggacaagggggagtcgctgggcatcaagcacgaggag 373
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28392777 gcacactgagcatggacaagggggagtcgctgggcatcaagcacgaggag 28392826
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 1346 ggtcaagagcagcaggaggacagggaggagccaggcccggccgccccaggggctggaagg 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28397916 ggtcaagagcagcaggaggacagggaggagccaggcccggccgccccaggggctggaagg 28397975
Query: 1406 accgctgccacctggcctgggggctgcagcgtggcctgtactcaagctgaccccccgccc 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28397976 accgctgccacctggcctgggggctgcagcgtggcctgtactcaagctgaccccccgccc 28398035
Query: 1466 cgtcaataaagctgtcagaagag 1488
|||||||||||||||||||||||
Sbjct: 28398036 cgtcaataaagctgtcagaagag 28398058
Score = 250 bits (126), Expect = 2e-63
Identities = 129/130 (99%)
Strand = Plus / Plus
Query: 373 gaccccgggccaccggcccaccaccaaccccaacgcatccaagtttgcccagaagatcgg 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28393631 gaccccgggccaccggcccaccaccaaccccaacgcatccaagtttgcccagaagatcgg 28393690
Query: 433 gggctccgagcgctgcccgcggtgcagccaggccgtctacgcagccgagaaggtgattgg 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28393691 gggctccgagcgctgcccgcggtgcagccaggccgtctacgcagccgagaaggtgattgg 28393750
Query: 493 tgccgggaag 502
||| ||||||
Sbjct: 28393751 tgctgggaag 28393760
Score = 230 bits (116), Expect = 2e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 88 cagaatgccgaactggggaggaggcaagaggtgtggggtgtgccagaagacggtgtactt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28387345 cagaatgccgaactggggaggaggcaagaggtgtggggtgtgccagaagacggtgtactt 28387404
Query: 148 tgccgaagaggttcagtgcgaaggcagcagcttccacaaatcctgcttcctgtgca 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28387405 tgccgaagaggttcagtgcgaaggcagcagcttccacaaatcctgcttcctgtgca 28387460
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 501 agtcctggcataagtcctgcttccgatgcgccaagtgcggtaaaggcctggagtccacca 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28396642 agtcctggcataagtcctgcttccgatgcgccaagtgcggtaaaggcctggagtccacca 28396701
Query: 561 ccctggccgacaaggatggcgagatttactgcaaagg 597
|||||||||||||||||||||||||||||||||||||
Sbjct: 28396702 ccctggccgacaaggatggcgagatttactgcaaagg 28396738
Score = 149 bits (75), Expect = 5e-33
Identities = 88/91 (96%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 1 cggcgcgcgggccgggcgagcg-agccccgcttccagagcgccgcccgctgtcgctgccg 59
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 28377586 cggcgcgcgggccggacgagcccagccccgcttccagagcgccgcccgctgtcgctgccg 28377645
Query: 60 ctaccgaaagcccagccaccaccgccgccag 90
|||||||||||||||||||||||||||||||
Sbjct: 28377646 ctaccgaaagcccagccaccaccgccgccag 28377676
>Sscrofa_Chr05
|| Length = 111506441
Score = 81.8 bits (41), Expect = 1e-12
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 245 cacggcgaggagatctactgcaagtcctgttatggcaagaagtatggacccaagggctac 304
|||| ||||||| |||||||||||||||| || || |||||||| || || || ||||||
Sbjct: 109469001 cacgacgaggaggtctactgcaagtcctgctacgggaagaagtacgggccaaaaggctac 109469060
Query: 305 ggctacggacagggcgcgggcacactgagcatggacaagggggagtcgctgggcatcaag 364
|| ||||| |||||||| ||||| || | ||||||| ||| ||| |||||||||||||
Sbjct: 109469061 gggtacggccagggcgctggcacgctcaacatggaccggggcgagaggctgggcatcaag 109469120
Query: 365 c 365
|
Sbjct: 109469121 c 109469121
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,236,035
Number of extensions: 204
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 10
Length of query: 1503
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1482
Effective length of database: 2,808,413,156
Effective search space: 4162068297192
Effective search space used: 4162068297192
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)