Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012461
(1117 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039992.1| protein SYS1 homolog [Bos taurus]. 304 1e-82
>ref|NP_001039992.1| protein SYS1 homolog [Bos taurus].
Length = 156
Score = 304 bits (778), Expect = 1e-82
Identities = 148/153 (96%), Positives = 150/153 (98%)
Frame = +2
Query: 266 QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPG 445
QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLV SSPSLDQ+FDAEILGFSTPPG
Sbjct: 4 QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVHSSPSLDQVFDAEILGFSTPPG 63
Query: 446 RLSTMSFVLNAPTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQ 625
RLSTMSFVLNA TCALGLLYFIRRGKQCLDFTVTVHFFHLLGCW YSSRFPSALTWWLVQ
Sbjct: 64 RLSTMSFVLNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWLYSSRFPSALTWWLVQ 123
Query: 626 AVCIALMAVIGEYLCMRSELKEIPLNSAPKSNV 724
AVCIALMAVIGEYLCMRSELKEIPLNSAPKS+V
Sbjct: 124 AVCIALMAVIGEYLCMRSELKEIPLNSAPKSSV 156
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,945,850
Number of extensions: 1114950
Number of successful extensions: 4277
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4276
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,240,222
Effective search space: 3816379496
Effective search space used: 3816379496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012461
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012461
(1117 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543018.2| PREDICTED: similar to Protein SYS1 homolog [Can... 245 7e-77
>ref|XP_543018.2| PREDICTED: similar to Protein SYS1 homolog [Canis familiaris].
Length = 152
Score = 245 bits (625), Expect(2) = 7e-77
Identities = 117/121 (96%), Positives = 118/121 (97%)
Frame = +2
Query: 266 QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPG 445
QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPG
Sbjct: 4 QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPG 63
Query: 446 RLSTMSFVLNAPTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQ 625
RLS MSF+LNA TCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPS LTWWLVQ
Sbjct: 64 RLSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSKLTWWLVQ 123
Query: 626 A 628
A
Sbjct: 124 A 124
Score = 62.0 bits (149), Expect(2) = 7e-77
Identities = 25/28 (89%), Positives = 25/28 (89%)
Frame = +1
Query: 628 RVHCAHGCHRGVPVHAVGAQGDPPQLGP 711
RVHC HGCHRGVPVHA GAQGDPPQL P
Sbjct: 125 RVHCTHGCHRGVPVHADGAQGDPPQLSP 152
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,669,824
Number of extensions: 1148673
Number of successful extensions: 4083
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4080
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 268
Effective length of database: 15,407,560
Effective search space: 4129226080
Effective search space used: 4129226080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012461
(1117 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134509.2| PREDICTED: protein SYS1 homolog isoform 2 [S... 248 6e-66
Alignment gi|XP_003134507.2| PREDICTED: protein SYS1 homolog isoform 2 [S... 151 6e-37
Alignment gi|XP_003360075.1| PREDICTED: protein SYS1 homolog [Sus scrofa]. 106 3e-23
>ref|XP_003134509.2| PREDICTED: protein SYS1 homolog isoform 2 [Sus scrofa].
Length = 137
Score = 248 bits (632), Expect = 6e-66
Identities = 122/123 (99%), Positives = 122/123 (99%), Gaps = 1/123 (0%)
Frame = +2
Query: 359 ALVDGLVRSSPSLDQMFDAEILGFSTPPGRLSTMSFVLNAPTCALGLLYFIRRGKQCLDF 538
ALVDGLVRSSPSLDQMFDAEILGFSTPPGRLSTMSFVLNAPTCALGLLYFIRRGKQCLDF
Sbjct: 15 ALVDGLVRSSPSLDQMFDAEILGFSTPPGRLSTMSFVLNAPTCALGLLYFIRRGKQCLDF 74
Query: 539 TVTVHFFHLLGCWFYSSRFPSALTWWLVQAVCIALMAVIGEYLC-MRSELKEIPLNSAPK 715
TVTVHFFHLLGCWFYSSRFPSALTWWLVQAVCIALMAVIGEYLC MRSELKEIPLNSAPK
Sbjct: 75 TVTVHFFHLLGCWFYSSRFPSALTWWLVQAVCIALMAVIGEYLCXMRSELKEIPLNSAPK 134
Query: 716 SNV 724
SNV
Sbjct: 135 SNV 137
>ref|XP_003134507.2| PREDICTED: protein SYS1 homolog isoform 2 [Sus scrofa].
Length = 120
Score = 151 bits (382), Expect = 6e-37
Identities = 69/69 (100%), Positives = 69/69 (100%)
Frame = +2
Query: 419 ILGFSTPPGRLSTMSFVLNAPTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFP 598
ILGFSTPPGRLSTMSFVLNAPTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFP
Sbjct: 42 ILGFSTPPGRLSTMSFVLNAPTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFP 101
Query: 599 SALTWWLVQ 625
SALTWWLVQ
Sbjct: 102 SALTWWLVQ 110
>ref|XP_003360075.1| PREDICTED: protein SYS1 homolog [Sus scrofa].
Length = 86
Score = 106 bits (264), Expect = 3e-23
Identities = 51/52 (98%), Positives = 52/52 (100%)
Frame = +2
Query: 266 QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEI 421
QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAE+
Sbjct: 4 QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEV 55
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,426,583
Number of extensions: 719610
Number of successful extensions: 2654
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2648
Number of HSP's successfully gapped: 3
Length of query: 372
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,854,232
Effective search space: 2408351104
Effective search space used: 2408351104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012461
(1117 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079851.2| protein SYS1 homolog [Mus musculus]. 301 5e-82
>ref|NP_079851.2| protein SYS1 homolog [Mus musculus].
Length = 156
Score = 301 bits (772), Expect = 5e-82
Identities = 147/153 (96%), Positives = 149/153 (97%)
Frame = +2
Query: 266 QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPG 445
QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVD LVRSSPSLDQMFDAEILGFSTPPG
Sbjct: 4 QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDALVRSSPSLDQMFDAEILGFSTPPG 63
Query: 446 RLSTMSFVLNAPTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQ 625
RLS MSFVLNA TCALGLLYFIRRGKQCLDFTVTVHFFHLLGCW YSSRFPSALTWWLVQ
Sbjct: 64 RLSMMSFVLNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWLYSSRFPSALTWWLVQ 123
Query: 626 AVCIALMAVIGEYLCMRSELKEIPLNSAPKSNV 724
AVCIALMAVIGEYLCMR+ELKEIPL+SAPKSNV
Sbjct: 124 AVCIALMAVIGEYLCMRTELKEIPLSSAPKSNV 156
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,251,664
Number of extensions: 925900
Number of successful extensions: 3343
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3340
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 269
Effective length of database: 12,523,851
Effective search space: 3368915919
Effective search space used: 3368915919
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012461
(1117 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001184058.1| protein SYS1 homolog isoform a [Homo sapiens]. 308 8e-84
Alignment gi|NP_291020.1| protein SYS1 homolog isoform a [Homo sapiens]. 308 8e-84
Alignment gi|NP_001093261.1| protein SYS1 homolog isoform b [Homo sapiens]. 141 1e-33
>ref|NP_001184058.1| protein SYS1 homolog isoform a [Homo sapiens].
Length = 156
Score = 308 bits (788), Expect = 8e-84
Identities = 149/153 (97%), Positives = 151/153 (98%)
Frame = +2
Query: 266 QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPG 445
QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPG
Sbjct: 4 QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPG 63
Query: 446 RLSTMSFVLNAPTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQ 625
RLS MSF+LNA TCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQ
Sbjct: 64 RLSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQ 123
Query: 626 AVCIALMAVIGEYLCMRSELKEIPLNSAPKSNV 724
AVCIALMAVIGEYLCMR+ELKEIPLNSAPKSNV
Sbjct: 124 AVCIALMAVIGEYLCMRTELKEIPLNSAPKSNV 156
>ref|NP_291020.1| protein SYS1 homolog isoform a [Homo sapiens].
Length = 156
Score = 308 bits (788), Expect = 8e-84
Identities = 149/153 (97%), Positives = 151/153 (98%)
Frame = +2
Query: 266 QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPG 445
QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPG
Sbjct: 4 QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPG 63
Query: 446 RLSTMSFVLNAPTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQ 625
RLS MSF+LNA TCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQ
Sbjct: 64 RLSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQ 123
Query: 626 AVCIALMAVIGEYLCMRSELKEIPLNSAPKSNV 724
AVCIALMAVIGEYLCMR+ELKEIPLNSAPKSNV
Sbjct: 124 AVCIALMAVIGEYLCMRTELKEIPLNSAPKSNV 156
>ref|NP_001093261.1| protein SYS1 homolog isoform b [Homo sapiens].
Length = 76
Score = 141 bits (356), Expect = 1e-33
Identities = 70/73 (95%), Positives = 71/73 (97%)
Frame = +2
Query: 266 QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPG 445
QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPG
Sbjct: 4 QFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPG 63
Query: 446 RLSTMSFVLNAPT 484
RLS MSF+LNA T
Sbjct: 64 RLSMMSFILNALT 76
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,829,757
Number of extensions: 1122513
Number of successful extensions: 4042
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4037
Number of HSP's successfully gapped: 3
Length of query: 372
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,868,908
Effective search space: 3984867344
Effective search space used: 3984867344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012461
(1117 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 1140 0.0
gb|GL892291.2| Sus scrofa unplaced genomic scaffold ChrUScaf178 517 e-144
>Sscrofa_Chr17
|| Length = 69701581
Score = 1140 bits (575), Expect = 0.0
Identities = 620/635 (97%), Gaps = 3/635 (0%)
Strand = Plus / Minus
Query: 486 gtgccctgggcttgctgtacttcatccggcgagggaagcagtgtctggatttcactgtca 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53279926 gtgccctgggcttgctgtacttcatccggcgagggaagcagtgtctggatttcactgtca 53279867
Query: 546 ctgtccatttctttcacctcctgggctgctggttctacagctcccgtttcccctcggcgc 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53279866 ctgtccatttctttcacctcctgggctgctggttctacagctcccgtttcccctcggcgc 53279807
Query: 606 tgacctggtggctggtccaggccgtgtgcattgcgctcatggctgtcatcggggagtacc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53279806 tgacctggtggctggtccaggccgtgtgcattgcgctcatggctgtcatcggggagtacc 53279747
Query: 666 tgtgcatgcggtcggagctcaaggagatccccctcaactcggcccctaagtccaatgtct 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53279746 tgtgcatgcggtcggagctcaaggagatccccctcaactcggcccctaagtccaatgtct 53279687
Query: 726 agagttgggtcctttggacaccccgttgggcacttgacacccccgcccccaacacctggg 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53279686 agagttgggtcctttggacaccccgttgggcacttgacacccccgcccccaacacctggg 53279627
Query: 786 gctgctcagaccgtccagatgaggtccagcccaggcctgagaggaaccctggaaatgtga 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53279626 gctgctcagaccgtccagatgaggtccagcccaggcctgagaggaaccctggaaatgtga 53279567
Query: 846 agtctctgttggtgtgggagaacgaggccgcatcaagaaggcaggtagcaggcagggtca 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53279566 agtctctgttggtgtgggagaacgaggccgcatcaagaaggcaggtagcaggcagggtca 53279507
Query: 906 cagtgcaagaatggccgccgtctactgaagccctggtatctgggaggtcggcgtggggac 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53279506 cagtgcaagaatggccgccgtctactgaagccctggtatctgggaggtcggcgtggggac 53279447
Query: 966 ctctttcagggcaataacagaatcggaaccatgtcactcttgagccaccatacctgtcac 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53279446 ctctttcagggcaataacagaatcggaaccatgtcactcttgagccaccatacctgtcac 53279387
Query: 1026 cagcctgnnnnnnnaaaagggaaa--caaaccaaacaaatcagggaaacctgatcggaat 1083
||||||| |||| ||||| |||| |||||||||| |||||||||||||||||
Sbjct: 53279386 cagcctgttattttaaaaaggaaaacaaaacaaaacaaatcaaggaaacctgatcggaat 53279327
Query: 1084 gaa-cactcttctcatcatctgacgtacttccctg 1117
||| |||||||||||||||||||||||| ||||||
Sbjct: 53279326 gaaccactcttctcatcatctgacgtacctccctg 53279292
Score = 363 bits (183), Expect = 1e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 236 agcagtgccccgcgagccggcatggcgggccagttccgcagctacgtgtgggacccgttg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53284367 agcagtgccccgcgagccggcatggcgggccagttccgcagctacgtgtgggacccgttg 53284308
Query: 296 ctgatcctgtcacagatcgtcctcatgcagactgtctattacggctcgctaggcctgtgg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53284307 ctgatcctgtcacagatcgtcctcatgcagactgtctattacggctcgctaggcctgtgg 53284248
Query: 356 ctggcgctggtggacgggctggtgcgcagcagcccctcgctggaccagatgttcgacgcc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53284247 ctggcgctggtggacgggctggtgcgcagcagcccctcgctggaccagatgttcgacgcc 53284188
Query: 416 gag 418
|||
Sbjct: 53284187 gag 53284185
Score = 341 bits (172), Expect = 5e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 4 ggaaacgcttccttcctacgtatccgctgctgcctcggccgccgctggagctttgcctct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53284817 ggaaacgcttccttcctacgtatccgctgctgcctcggccgccgctggagctttgcctct 53284758
Query: 64 ctaggcctgtagggactcttctccatggttctgcctgtcagcactgcttcgggggccagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53284757 ctaggcctgtagggactcttctccatggttctgcctgtcagcactgcttcgggggccagc 53284698
Query: 124 cggtgagactgggccgcactcggacgctttgattctcgagtccgacactggt 175
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53284697 cggtgagactgggccgcactcggacgctttgattctcgagtccgacactggt 53284646
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 417 agatcctgggcttttccacccctccaggccggctctccaccatgtccttcgtcctcaacg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53281134 agatcctgggcttttccacccctccaggccggctctccaccatgtccttcgtcctcaacg 53281075
Query: 477 cccccacctg 486
||||||||||
Sbjct: 53281074 cccccacctg 53281065
>gb|GL892291.2| Sus scrofa unplaced genomic scaffold ChrUScaf178
Length = 25907
Score = 517 bits (261), Expect = e-144
Identities = 306/321 (95%), Gaps = 3/321 (0%)
Strand = Plus / Minus
Query: 800 ccagatgaggtccagcccaggcctgagaggaaccctggaaatgtgaagtctctgttggtg 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19526 ccagatgaggtccagcccaggcctgagaggaaccctggaaatgtgaagtctctgttggtg 19467
Query: 860 tgggagaacgaggccgcatcaagaaggcaggtagcaggcagggtcacagtgcaagaatgg 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19466 tgggagaacgaggccgcatcaagaaggcaggtagcaggcagggtcacagtgcaagaatgg 19407
Query: 920 ccgccgtctactgaagccctggtatctgggaggtcggcgtggggacctctttcagggcaa 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19406 ccgccgtctactgaagccctggtatctgggaggtcggcgtggggacctctttcagggcaa 19347
Query: 980 taacagaatcggaaccatgtcactcttgagccaccatacctgtcaccagcctgnnnnnnn 1039
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19346 taacagaatcggaaccatgtcactcttgagccaccatacctgtcaccagcctgttatttt 19287
Query: 1040 aaaagggaaa--caaaccaaacaaatcagggaaacctgatcggaatgaa-cactcttctc 1096
|||| ||||| |||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 19286 aaaaaggaaaacaaaacaaaacaaatcaaggaaacctgatcggaatgaaccactcttctc 19227
Query: 1097 atcatctgacgtacttccctg 1117
|||||||||||||| ||||||
Sbjct: 19226 atcatctgacgtacctccctg 19206
Score = 494 bits (249), Expect = e-137
Identities = 260/263 (98%), Gaps = 3/263 (1%)
Strand = Plus / Minus
Query: 486 gtgccctgggcttgctgtacttcatccggcgagggaagcagtgtctggatttcactgtca 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19889 gtgccctgggcttgctgtacttcatccggcgagggaagcagtgtctggatttcactgtca 19830
Query: 546 ctgtccatttctttcacctcctgggctgctggttctacagctcccgtttcccctcggcgc 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19829 ctgtccatttctttcacctcctgggctgctggttctacagctcccgtttcccctcggcgc 19770
Query: 606 tgacctggtggctggtccaggccgtgtgcattgcgctcatggctgtcatcggggagtacc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19769 tgacctggtggctggtccaggccgtgtgcattgcgctcatggctgtcatcggggagtacc 19710
Query: 666 tgtgc---atgcggtcggagctcaaggagatccccctcaactcggcccctaagtccaatg 722
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19709 tgtgcatnatgcggtcggagctcaaggagatccccctcaactcggcccctaagtccaatg 19650
Query: 723 tctagagttgggtcctttggaca 745
|||||||||||||||||||||||
Sbjct: 19649 tctagagttgggtcctttggaca 19627
Score = 341 bits (172), Expect = 5e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 4 ggaaacgcttccttcctacgtatccgctgctgcctcggccgccgctggagctttgcctct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24170 ggaaacgcttccttcctacgtatccgctgctgcctcggccgccgctggagctttgcctct 24111
Query: 64 ctaggcctgtagggactcttctccatggttctgcctgtcagcactgcttcgggggccagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24110 ctaggcctgtagggactcttctccatggttctgcctgtcagcactgcttcgggggccagc 24051
Query: 124 cggtgagactgggccgcactcggacgctttgattctcgagtccgacactggt 175
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24050 cggtgagactgggccgcactcggacgctttgattctcgagtccgacactggt 23999
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 417 agatcctgggcttttccacccctccaggccggctctccaccatgtccttcgtcctcaacg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21097 agatcctgggcttttccacccctccaggccggctctccaccatgtccttcgtcctcaacg 21038
Query: 477 cccccacctg 486
||||||||||
Sbjct: 21037 cccccacctg 21028
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Minus
Query: 362 ctggtggacgggctggtgcgcagcagcccctcgctggaccagatgttcgacgccgag 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23978 ctggtggacgggctggtgcgcagcagcccctcgctggaccagatgttcgacgccgag 23922
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,440,304
Number of extensions: 152
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 11
Length of query: 1117
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1096
Effective length of database: 2,808,413,156
Effective search space: 3078020818976
Effective search space used: 3078020818976
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)