Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012463
(3002 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029831.1| neurologic sensory protein 1 [Bos taurus]. 520 e-147
Alignment gi|NP_001099102.1| family with sequence similarity 84, member B... 218 2e-56
>ref|NP_001029831.1| neurologic sensory protein 1 [Bos taurus].
Length = 297
Score = 520 bits (1339), Expect = e-147
Identities = 258/297 (86%), Positives = 260/297 (87%), Gaps = 5/297 (1%)
Frame = +2
Query: 620 MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPG 799
MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVK PPG
Sbjct: 1 MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKAPPG 60
Query: 800 CAPCPESPSRXXXXXXXXXXX-----NETQFSAFRGQECIFSKVSGGPQGADLSVYAVTA 964
CAPCPESPSR NETQFSAFRGQECIFSKVSGGPQGADLSVYAVTA
Sbjct: 61 CAPCPESPSRHHHHHHHHHLLHQLVLNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTA 120
Query: 965 LPALCEPGDXXXXXXXXXXXXXXXXXXHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVG 1144
LPALCEPGD HWAVYVGGGQIIHL QGEIRQDSLYEAGAANVG
Sbjct: 121 LPALCEPGDLLELLWLQPAPEPPAPAPHWAVYVGGGQIIHLCQGEIRQDSLYEAGAANVG 180
Query: 1145 RVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFRAGGEVPAG 1324
RVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREF+AGGEVPAG
Sbjct: 181 RVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFKAGGEVPAG 240
Query: 1325 TQPPQQQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE 1495
TQPPQQQYYLKVHL +NKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE
Sbjct: 241 TQPPQQQYYLKVHLADNKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE 297
>ref|NP_001099102.1| family with sequence similarity 84, member B [Bos taurus].
Length = 287
Score = 218 bits (555), Expect = 2e-56
Identities = 123/286 (43%), Positives = 159/286 (55%), Gaps = 1/286 (0%)
Frame = +2
Query: 620 MGNQLDRITHLNYSELPTGDPSGIEKDE-LRVGVAYFFSDEEEDLDERGQPDKFGVKGPP 796
MGNQ++++THL+Y E+PT DP+G+++D+ R+GV+Y FS+++ED++
Sbjct: 1 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDME-------------- 46
Query: 797 GCAPCPESPSRXXXXXXXXXXXNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPAL 976
P P P +E + S F ECI+ K S P A LS Y L
Sbjct: 47 ---PQPYDPR-----------LHEVECSVFYRDECIYQK-SFSPGSAALSTYTPENLLNK 91
Query: 977 CEPGDXXXXXXXXXXXXXXXXXXHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVN 1156
C PGD HWAVYVG Q++HLH+ E+ L +A GRVVN
Sbjct: 92 CRPGDLVEFVSQAQYP-------HWAVYVGNFQVVHLHRLEVSNSFLTDASQGRRGRVVN 144
Query: 1157 SWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFRAGGEVPAGTQPP 1336
YRY+PL VV+NA H+G K E+ W NSESFAAWCR+GKREF+ GGE+ G QP
Sbjct: 145 DLYRYKPLSPSAVVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQP- 203
Query: 1337 QQQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELA 1474
Y L++ L + HT F SLEDLI EKRR D GR VLQELA
Sbjct: 204 ---YRLQIQLSAQRSHTLEFQSLEDLIMEKRRNDQIGRTAVLQELA 246
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 112,200,274
Number of extensions: 3427995
Number of successful extensions: 18335
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 17961
Number of HSP's successfully gapped: 2
Length of query: 1000
Length of database: 17,681,374
Length adjustment: 112
Effective length of query: 888
Effective length of database: 13,975,518
Effective search space: 12410259984
Effective search space used: 12410259984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012463
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012463
(3002 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852771.1| PREDICTED: similar to NSE1 [Canis familiaris]. 540 e-153
Alignment gi|XP_852091.1| PREDICTED: similar to breast cancer membrane pr... 177 5e-44
>ref|XP_852771.1| PREDICTED: similar to NSE1 [Canis familiaris].
Length = 687
Score = 540 bits (1391), Expect = e-153
Identities = 270/318 (84%), Positives = 274/318 (86%), Gaps = 10/318 (3%)
Frame = +2
Query: 572 GKSRIPSPGPHLAASLMGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDL 751
G +RIP+PGP LAASLMGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDL
Sbjct: 370 GLARIPAPGPRLAASLMGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDL 429
Query: 752 DERGQPDKFGVKGPPGCAPCPESPSRXXXXXXXXXXX--------NETQFSAFRGQECIF 907
DERGQP KFGVK PPGC PCPESPSR NETQFSAFRGQECIF
Sbjct: 430 DERGQPHKFGVKAPPGCTPCPESPSRHHHHHHHHHHHHLLHQLVLNETQFSAFRGQECIF 489
Query: 908 SKVSGGPQGADLSVYAVTALPALCEPGDXXXXXXXXXXXXXXXXXX--HWAVYVGGGQII 1081
SKVSGGPQGADLSVYAVTALPALCEPGD HWAVYVGGGQII
Sbjct: 490 SKVSGGPQGADLSVYAVTALPALCEPGDLLELLWLQPAPEPPAPAPAPHWAVYVGGGQII 549
Query: 1082 HLHQGEIRQDSLYEAGAANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSES 1261
HLHQGEIRQDSLYEAGAANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSES
Sbjct: 550 HLHQGEIRQDSLYEAGAANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSES 609
Query: 1262 FAAWCRFGKREFRAGGEVPAGTQPPQQQYYLKVHLGENKVHTARFHSLEDLIREKRRIDA 1441
FAAWCRFGKREF+AGGEVPAGTQPPQQQYYLKVHLG+NKVHTARFHSLEDLIREKRRIDA
Sbjct: 610 FAAWCRFGKREFKAGGEVPAGTQPPQQQYYLKVHLGDNKVHTARFHSLEDLIREKRRIDA 669
Query: 1442 SGRLRVLQELADLVDDKE 1495
SGRLRVLQELADLVDDKE
Sbjct: 670 SGRLRVLQELADLVDDKE 687
>ref|XP_852091.1| PREDICTED: similar to breast cancer membrane protein 101 [Canis
familiaris].
Length = 342
Score = 177 bits (449), Expect = 5e-44
Identities = 104/240 (43%), Positives = 129/240 (53%)
Frame = +2
Query: 863 NETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALCEPGDXXXXXXXXXXXXXXXXX 1042
+E + S F ECI+ K S P A LS Y L C+PGD
Sbjct: 111 HEVECSVFYRDECIYQK-SFAPGSAALSTYTPENLLNKCKPGDLVEFVSQAQYP------ 163
Query: 1043 XHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVNSWYRYRPLVAELVVQNACGHLG 1222
HWAVYVG Q++HLH+ E+ L +A GRVVN YRY+PL VV+NA H+G
Sbjct: 164 -HWAVYVGNFQVVHLHRLEVSNSFLTDASQGRRGRVVNDLYRYKPLSPGAVVRNALAHVG 222
Query: 1223 LKSEEICWTNSESFAAWCRFGKREFRAGGEVPAGTQPPQQQYYLKVHLGENKVHTARFHS 1402
K E+ W NSESFAAWCR+GKREF+ GGE+ G QP Y L++ L + HT F S
Sbjct: 223 AKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQP----YRLQIQLSAQRSHTLEFQS 278
Query: 1403 LEDLIREKRRIDASGRLRVLQELADLVDDKE*RGEQPLLQSPRALLPPPRPGFQAGDSSS 1582
LEDLI EKRR D GR VLQELA + E ++ + R PP RP G+ +
Sbjct: 279 LEDLIMEKRRNDQIGRAAVLQELAMHLHPAE--PDEGDSDAARTTPPPGRPPAPGGEDEA 336
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 117,133,669
Number of extensions: 3511722
Number of successful extensions: 18398
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 18164
Number of HSP's successfully gapped: 2
Length of query: 1000
Length of database: 18,874,504
Length adjustment: 113
Effective length of query: 887
Effective length of database: 15,107,536
Effective search space: 13400384432
Effective search space used: 13400384432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012463
(3002 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125468.1| PREDICTED: protein FAM84A-like [Sus scrofa]. 775 0.0
Alignment gi|XP_003355001.1| PREDICTED: protein FAM84A-like [Sus scrofa]. 775 0.0
Alignment gi|XP_003355022.1| PREDICTED: protein FAM84B-like [Sus scrofa]. 229 9e-60
Alignment gi|XP_001928100.1| PREDICTED: protein FAM84B-like [Sus scrofa]. 229 9e-60
>ref|XP_003125468.1| PREDICTED: protein FAM84A-like [Sus scrofa].
Length = 410
Score = 775 bits (2001), Expect = 0.0
Identities = 380/410 (92%), Positives = 381/410 (92%)
Frame = +2
Query: 266 MSASRGGPWNQRLRLLRVVRGAEGNQNRVGTAQVEPAVLPAPTSRRTNTAPETAPHRSAR 445
MSASRGGPWNQRLRLLRVVRGAEGNQNRVGTAQVEPAVLPAPTSRRTNTAPETAPHRSAR
Sbjct: 1 MSASRGGPWNQRLRLLRVVRGAEGNQNRVGTAQVEPAVLPAPTSRRTNTAPETAPHRSAR 60
Query: 446 DRAEPQPHASPRTRSPALPPPDYRRSTHGDQETLKEFGVSGAGKSRIPSPGPHLAASLMG 625
DRAEPQPHASPRTRSPALPPPDYRRSTHGDQETLKEFGVSGAGKSRIPSPGPHLAASLMG
Sbjct: 61 DRAEPQPHASPRTRSPALPPPDYRRSTHGDQETLKEFGVSGAGKSRIPSPGPHLAASLMG 120
Query: 626 NQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPGCA 805
NQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPGCA
Sbjct: 121 NQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPGCA 180
Query: 806 PCPESPSRXXXXXXXXXXXNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALCEP 985
PCPESPSR NETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALCEP
Sbjct: 181 PCPESPSRHHHHLLHQLVLNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALCEP 240
Query: 986 GDXXXXXXXXXXXXXXXXXXHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVNSWY 1165
GD HWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVNSWY
Sbjct: 241 GDLLELLWLQPAPEPPAPAPHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVNSWY 300
Query: 1166 RYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFRAGGEVPAGTQPPQQQ 1345
RYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREF+AGGEVPAGTQPPQQQ
Sbjct: 301 RYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFKAGGEVPAGTQPPQQQ 360
Query: 1346 YYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE 1495
YYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE
Sbjct: 361 YYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE 410
>ref|XP_003355001.1| PREDICTED: protein FAM84A-like [Sus scrofa].
Length = 410
Score = 775 bits (2001), Expect = 0.0
Identities = 380/410 (92%), Positives = 381/410 (92%)
Frame = +2
Query: 266 MSASRGGPWNQRLRLLRVVRGAEGNQNRVGTAQVEPAVLPAPTSRRTNTAPETAPHRSAR 445
MSASRGGPWNQRLRLLRVVRGAEGNQNRVGTAQVEPAVLPAPTSRRTNTAPETAPHRSAR
Sbjct: 1 MSASRGGPWNQRLRLLRVVRGAEGNQNRVGTAQVEPAVLPAPTSRRTNTAPETAPHRSAR 60
Query: 446 DRAEPQPHASPRTRSPALPPPDYRRSTHGDQETLKEFGVSGAGKSRIPSPGPHLAASLMG 625
DRAEPQPHASPRTRSPALPPPDYRRSTHGDQETLKEFGVSGAGKSRIPSPGPHLAASLMG
Sbjct: 61 DRAEPQPHASPRTRSPALPPPDYRRSTHGDQETLKEFGVSGAGKSRIPSPGPHLAASLMG 120
Query: 626 NQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPGCA 805
NQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPGCA
Sbjct: 121 NQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPGCA 180
Query: 806 PCPESPSRXXXXXXXXXXXNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALCEP 985
PCPESPSR NETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALCEP
Sbjct: 181 PCPESPSRHHHHLLHQLVLNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALCEP 240
Query: 986 GDXXXXXXXXXXXXXXXXXXHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVNSWY 1165
GD HWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVNSWY
Sbjct: 241 GDLLELLWLQPAPEPPAPAPHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVNSWY 300
Query: 1166 RYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFRAGGEVPAGTQPPQQQ 1345
RYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREF+AGGEVPAGTQPPQQQ
Sbjct: 301 RYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFKAGGEVPAGTQPPQQQ 360
Query: 1346 YYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE 1495
YYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE
Sbjct: 361 YYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE 410
>ref|XP_003355022.1| PREDICTED: protein FAM84B-like [Sus scrofa].
Length = 312
Score = 229 bits (583), Expect = 9e-60
Identities = 132/313 (42%), Positives = 173/313 (55%), Gaps = 1/313 (0%)
Frame = +2
Query: 620 MGNQLDRITHLNYSELPTGDPSGIEKDE-LRVGVAYFFSDEEEDLDERGQPDKFGVKGPP 796
MGNQ++++THL+Y E+PT DP+G+++D+ R+GV+Y FS+++ED++ QP G+ G
Sbjct: 1 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEP--QPPPQGLDGGG 58
Query: 797 GCAPCPESPSRXXXXXXXXXXXNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPAL 976
G P +E + S F ECI+ K S P A LS Y L
Sbjct: 59 GGLPDSGDGPPLPPPQPYDPRLHEVECSVFYRDECIYQK-SFAPGSAALSTYTPENLLNK 117
Query: 977 CEPGDXXXXXXXXXXXXXXXXXXHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVN 1156
C PGD HWAVYVG Q++HLH+ E+ L +A GRVVN
Sbjct: 118 CRPGDLVEFVSQAQYP-------HWAVYVGNFQVVHLHRLEVSNSFLTDASQGRRGRVVN 170
Query: 1157 SWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFRAGGEVPAGTQPP 1336
YRY+PL VV+NA H+G K E+ W NSESFAAWCR+GKREF+ GGE+ G QP
Sbjct: 171 DLYRYKPLSPSAVVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQP- 229
Query: 1337 QQQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE*RGEQPL 1516
Y L++ L + HT F SLEDLI EKRR D GR VLQELA + E ++
Sbjct: 230 ---YRLQIQLSAQRSHTLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAE--PDEGD 284
Query: 1517 LQSPRALLPPPRP 1555
+ R PP RP
Sbjct: 285 SDAARTTPPPGRP 297
>ref|XP_001928100.1| PREDICTED: protein FAM84B-like [Sus scrofa].
Length = 312
Score = 229 bits (583), Expect = 9e-60
Identities = 132/313 (42%), Positives = 173/313 (55%), Gaps = 1/313 (0%)
Frame = +2
Query: 620 MGNQLDRITHLNYSELPTGDPSGIEKDE-LRVGVAYFFSDEEEDLDERGQPDKFGVKGPP 796
MGNQ++++THL+Y E+PT DP+G+++D+ R+GV+Y FS+++ED++ QP G+ G
Sbjct: 1 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEP--QPPPQGLDGGG 58
Query: 797 GCAPCPESPSRXXXXXXXXXXXNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPAL 976
G P +E + S F ECI+ K S P A LS Y L
Sbjct: 59 GGLPDSGDGPPLPPPQPYDPRLHEVECSVFYRDECIYQK-SFAPGSAALSTYTPENLLNK 117
Query: 977 CEPGDXXXXXXXXXXXXXXXXXXHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVN 1156
C PGD HWAVYVG Q++HLH+ E+ L +A GRVVN
Sbjct: 118 CRPGDLVEFVSQAQYP-------HWAVYVGNFQVVHLHRLEVSNSFLTDASQGRRGRVVN 170
Query: 1157 SWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFRAGGEVPAGTQPP 1336
YRY+PL VV+NA H+G K E+ W NSESFAAWCR+GKREF+ GGE+ G QP
Sbjct: 171 DLYRYKPLSPSAVVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQP- 229
Query: 1337 QQQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE*RGEQPL 1516
Y L++ L + HT F SLEDLI EKRR D GR VLQELA + E ++
Sbjct: 230 ---YRLQIQLSAQRSHTLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAE--PDEGD 284
Query: 1517 LQSPRALLPPPRP 1555
+ R PP RP
Sbjct: 285 SDAARTTPPPGRP 297
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 72,987,474
Number of extensions: 2283634
Number of successful extensions: 11684
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11482
Number of HSP's successfully gapped: 4
Length of query: 1000
Length of database: 11,343,932
Length adjustment: 109
Effective length of query: 891
Effective length of database: 8,630,159
Effective search space: 7689471669
Effective search space used: 7689471669
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012463
(3002 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083283.2| family with sequence similarity 84, member A [M... 525 e-149
Alignment gi|NP_001156398.1| hypothetical protein LOC399603 [Mus musculus]. 229 1e-59
>ref|NP_083283.2| family with sequence similarity 84, member A [Mus musculus].
Length = 292
Score = 525 bits (1353), Expect = e-149
Identities = 255/292 (87%), Positives = 260/292 (89%)
Frame = +2
Query: 620 MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPG 799
MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPG
Sbjct: 1 MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPG 60
Query: 800 CAPCPESPSRXXXXXXXXXXXNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALC 979
C+PCPESPSR NETQFSAFRGQECIFSKV+GGPQGADLSVYAVTALPA+C
Sbjct: 61 CSPCPESPSRHHHHLLHQLVLNETQFSAFRGQECIFSKVTGGPQGADLSVYAVTALPAIC 120
Query: 980 EPGDXXXXXXXXXXXXXXXXXXHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVNS 1159
EPGD HWAVYVGGGQIIHLHQGEIRQDSLY+AGAANVGRVVNS
Sbjct: 121 EPGDLLELLWLQPATEQPAPAPHWAVYVGGGQIIHLHQGEIRQDSLYQAGAANVGRVVNS 180
Query: 1160 WYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFRAGGEVPAGTQPPQ 1339
WYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREF+AGGEVPAGTQPPQ
Sbjct: 181 WYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFKAGGEVPAGTQPPQ 240
Query: 1340 QQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE 1495
QQYYLKVHL ENKVHTARFHSLEDLIREKRRIDASGRLRVLQEL D VDDKE
Sbjct: 241 QQYYLKVHLEENKVHTARFHSLEDLIREKRRIDASGRLRVLQELEDFVDDKE 292
>ref|NP_001156398.1| hypothetical protein LOC399603 [Mus musculus].
Length = 310
Score = 229 bits (583), Expect = 1e-59
Identities = 136/333 (40%), Positives = 182/333 (54%), Gaps = 11/333 (3%)
Frame = +2
Query: 620 MGNQLDRITHLNYSELPTGDPSGIEKDE-LRVGVAYFFSDEEEDLDERGQPDKFGVKG-- 790
MGNQ++++THL+Y E+PT DP+G+++D+ R+GV+Y FS+++ED++ QP G+ G
Sbjct: 1 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEP--QPPPQGLDGGA 58
Query: 791 -------PPGCAPCPESPSRXXXXXXXXXXXNETQFSAFRGQECIFSKVSGGPQGADLSV 949
PP P P P + +E + S F ECI+ K S P A LS
Sbjct: 59 LSDSGDRPPLPPPQPYDPRQ-----------HEVECSVFYRDECIYQK-SFAPGSAALST 106
Query: 950 YAVTALPALCEPGDXXXXXXXXXXXXXXXXXXHWAVYVGGGQIIHLHQGEIRQDSLYEAG 1129
Y L C PGD HWAVYVG Q++HLH+ E+ L +A
Sbjct: 107 YTPENLLNKCSPGDLVEFVSQAQYP-------HWAVYVGNFQVVHLHRLEVSNSFLTDAS 159
Query: 1130 AANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFRAGG 1309
GRVVN YRY+PL VV+NA H+G K E+ W NSESFAAWCR+GKREF+ GG
Sbjct: 160 QGRRGRVVNDLYRYKPLSPSAVVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGG 219
Query: 1310 EVPAGTQPPQQQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDD 1489
E+ G QP Y L++ L + HT F SLEDLI EKRR D GR VLQELA +
Sbjct: 220 ELRIGKQP----YRLQIQLSAQRSHTLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHP 275
Query: 1490 KE-*RGEQPLLQSPRALLPPPRPGFQAGDSSSL 1585
E G+ ++ + L PP G + + S+
Sbjct: 276 AEPDEGDSDATRTTPSPLRPPASGSEEENGDSV 308
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 95,714,501
Number of extensions: 2774497
Number of successful extensions: 13545
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 13205
Number of HSP's successfully gapped: 2
Length of query: 1000
Length of database: 15,617,559
Length adjustment: 111
Effective length of query: 889
Effective length of database: 12,283,563
Effective search space: 10920087507
Effective search space used: 10920087507
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012463
(3002 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_660158.2| neurologic sensory protein 1 [Homo sapiens]. 531 e-150
Alignment gi|NP_777571.1| family with sequence similarity 84, member B [H... 231 4e-60
>ref|NP_660158.2| neurologic sensory protein 1 [Homo sapiens].
Length = 292
Score = 531 bits (1368), Expect = e-150
Identities = 259/292 (88%), Positives = 261/292 (89%)
Frame = +2
Query: 620 MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPG 799
MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSD+EEDLDERGQPDKFGVK PPG
Sbjct: 1 MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDDEEDLDERGQPDKFGVKAPPG 60
Query: 800 CAPCPESPSRXXXXXXXXXXXNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALC 979
C PCPESPSR NETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALC
Sbjct: 61 CTPCPESPSRHHHHLLHQLVLNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALC 120
Query: 980 EPGDXXXXXXXXXXXXXXXXXXHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVNS 1159
EPGD HWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVNS
Sbjct: 121 EPGDLLELLWLQPAPEPPAPAPHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVNS 180
Query: 1160 WYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFRAGGEVPAGTQPPQ 1339
WYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREF+AGGEVPAGTQPPQ
Sbjct: 181 WYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFKAGGEVPAGTQPPQ 240
Query: 1340 QQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE 1495
QQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE
Sbjct: 241 QQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE 292
>ref|NP_777571.1| family with sequence similarity 84, member B [Homo sapiens].
Length = 310
Score = 231 bits (588), Expect = 4e-60
Identities = 137/322 (42%), Positives = 178/322 (55%), Gaps = 10/322 (3%)
Frame = +2
Query: 620 MGNQLDRITHLNYSELPTGDPSGIEKDE-LRVGVAYFFSDEEEDLDER---------GQP 769
MGNQ++++THL+Y E+PT DP+G+++D+ R+GV+Y FS+++ED++ + G P
Sbjct: 1 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLP 60
Query: 770 DKFGVKGPPGCAPCPESPSRXXXXXXXXXXXNETQFSAFRGQECIFSKVSGGPQGADLSV 949
D G GPP P P P +E + S F ECI+ K S P A LS
Sbjct: 61 D--GGDGPPPPQPQPYDPR-----------LHEVECSVFYRDECIYQK-SFAPGSAALST 106
Query: 950 YAVTALPALCEPGDXXXXXXXXXXXXXXXXXXHWAVYVGGGQIIHLHQGEIRQDSLYEAG 1129
Y L C+PGD HWAVYVG Q++HLH+ E+ L +A
Sbjct: 107 YTPENLLNKCKPGDLVEFVSQAQYP-------HWAVYVGNFQVVHLHRLEVINSFLTDAS 159
Query: 1130 AANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFRAGG 1309
GRVVN YRY+PL + VV+NA H+G K E+ W NSESFAAWCR+GKREF+ GG
Sbjct: 160 QGRRGRVVNDLYRYKPLSSSAVVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGG 219
Query: 1310 EVPAGTQPPQQQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDD 1489
E+ G QP Y L++ L + HT F SLEDLI EKRR D GR VLQELA +
Sbjct: 220 ELRIGKQP----YRLQIQLSAQRSHTLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHP 275
Query: 1490 KE*RGEQPLLQSPRALLPPPRP 1555
E E+ R PP RP
Sbjct: 276 AE--PEEGDSNVARTTPPPGRP 295
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 114,157,381
Number of extensions: 3389892
Number of successful extensions: 16972
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 16687
Number of HSP's successfully gapped: 2
Length of query: 1000
Length of database: 18,297,164
Length adjustment: 112
Effective length of query: 888
Effective length of database: 14,605,196
Effective search space: 12969414048
Effective search space used: 12969414048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012463
(3002 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 3705 0.0
Sscrofa_Chr04 66 1e-07
>Sscrofa_Chr03
|| Length = 144787322
Score = 3705 bits (1869), Expect = 0.0
Identities = 1931/1945 (99%), Gaps = 5/1945 (0%)
Strand = Plus / Minus
Query: 1045 acactgggccgtctacgtgggcggcgggcagatcatccacctgcatcaaggcgagatccg 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143908275 acactgggccgtctacgtgggcggcgggcagatcatccacctgcatcaaggcgagatccg 143908216
Query: 1105 ccaggacagcctgtacgaggcgggcgcggccaacgtgggccgggtggtgaatagctggta 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143908215 ccaggacagcctgtacgaggcgggcgcggccaacgtgggccgggtggtgaatagctggta 143908156
Query: 1165 ccgctaccgcccgctggtggccgagctagtggtgcagaacgcctgcggtcacctgggcct 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143908155 ccgctaccgcccgctggtggccgagctagtggtgcagaacgcctgcggtcacctgggcct 143908096
Query: 1225 caagagcgaggagatctgctggacgaactcggagagcttcgccgcctggtgccgctttgg 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143908095 caagagcgaggagatctgctggacgaactcggagagcttcgccgcctggtgccgctttgg 143908036
Query: 1285 caagcgggagttcagggcgggaggggaggtgcccgccggcacgcagcccccgcagcagca 1344
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143908035 caagcgggagttcaaggcgggaggggaggtgcccgccggcacgcagcccccgcagcagca 143907976
Query: 1345 gtactatctcaaggtgcacctgggtgagaacaaggtgcacacggccaggtttcacagcct 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143907975 gtactatctcaaggtgcacctgggtgagaacaaggtgcacacggccaggtttcacagcct 143907916
Query: 1405 ggaagacctcatccgcgagaagcgccgcatcgacgccagtgggcgcctgcgtgtgctcca 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143907915 ggaagacctcatccgcgagaagcgccgcatcgacgccagtgggcgcctgcgtgtgctcca 143907856
Query: 1465 ggagctcgccgacctcgtggacgacaaggagtagcggggggaacagcccctcctccagtc 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143907855 ggagctcgccgacctcgtggacgacaaggagtagcggggggaacagcccctcctccagtc 143907796
Query: 1525 tccccgcgccctgctccctcccccacgcccgggcttccaggccggcgattcatcatccct 1584
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 143907795 tccccgcgccctgctccctcccccacgcccgggcttccaggccggcgactcatcatacct 143907736
Query: 1585 gacccctcgagtggccgccgccagtggccagtgcccaggctgcagccttgcacccctccg 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143907735 gacccctcgagtggccgccgccagtggccagtgcccaggctgcagccttgcacccctccg 143907676
Query: 1645 gcaaggggcaggaagtctcaggaactggtcccgggactgaaagagctgtgtgggcccggc 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143907675 gcaaggggcaggaagtctcaggaactggtcccgggactgaaagagctgtgtgggcccggc 143907616
Query: 1705 tgagaccccccagtggtggtgatggtgtagggaacaccagcgtgcgccttccccttgagt 1764
||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 143907615 tgagatcccc-agtggtggtgatggtgtagggaaccccagcgtgcgccttccccttgagt 143907557
Query: 1765 tttaagtggggagaagagaaggggccgaggggagcagggactaagcctcccccacaagtt 1824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143907556 tttaagtggggagaagagaaggggccgaggggagcagggactaagcctcccccacaagtt 143907497
Query: 1825 actggtcagtgatgatcacccgacttactagaaagggaccctcacagccccaaacgcgca 1884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143907496 actggtcagtgatgatcacccgacttactagaaagggaccctcacagccccaaacgcgca 143907437
Query: 1885 cacacaaaccggtgggaggtgagaattgatcttttccgggcacagttcagctccagtatg 1944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143907436 cacacaaaccggtgggaggtgagaattgatcttttccgggcacagttcagctccagtatg 143907377
Query: 1945 gttgggtccccagattgcaggatttccaagaaatccagcctgtccctcatgcacttgtga 2004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143907376 gttgggtccccagattgcaggatttccaagaaatccagcctgtccctcatgcacttgtga 143907317
Query: 2005 ataattccacaagagagcacttggggactccgggttatccccgaggcggcctgggacttt 2064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143907316 ataattccacaagagagcacttggggactccgggttatccccgaggcggcctgggacttt 143907257
Query: 2065 tccagctctccagcctttggtctcctgacttcgcatccgcagctccgggctcagctagcc 2124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143907256 tccagctctccagcctttggtctcctgacttcgcatccgcagctccgggctcagctagcc 143907197
Query: 2125 agtgtctgcttcctgctctttccaccgagggaagcgaaacgccacccccc-acccgcatt 2183
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 143907196 agtgtctgcttcctgctctttccaccgagggaagcgaaacgccacccccccacccgcatt 143907137
Query: 2184 tgtctgtgagtctcccttgctggcagaagggatgccttcccggtccccaggggaaaatgg 2243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143907136 tgtctgtgagtctcccttgctggcagaagggatgccttcccggtccccaggggaaaatgg 143907077
Query: 2244 cgcagctaattcggtgaggcgagccggccccgcccccagcgagaagttcacttggtgtcc 2303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143907076 cgcagctaattcggtgaggcgagccggccccgcccccagcgagaagttcacttggtgtcc 143907017
Query: 2304 gcgaacttgaatttgtgaagagggcgctcattcttaaccacaaattgtgccctccttgag 2363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143907016 gcgaacttgaatttgtgaagagggcgctcattcttaaccacaaattgtgccctccttgag 143906957
Query: 2364 ctgcgtttcagaaataaccctgcttttacagggattgaaggagagagagaaggaggggga 2423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143906956 ctgcgtttcagaaataaccctgcttttacagggattgaaggagagagagaaggaggggga 143906897
Query: 2424 ggacatggcaacattccagaaaccagcattattacaacaccatagccagtatgtttagtt 2483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143906896 ggacatggcaacattccagaaaccagcattattacaacaccatagccagtatgtttagtt 143906837
Query: 2484 tggcttttcctaacagaaatctcagaaggtggggaaggtggaaataaagttttaaaaacg 2543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143906836 tggcttttcctaacagaaatctcagaaggtggggaaggtggaaataaagttttaaaaacg 143906777
Query: 2544 agagagcagttttccaacgatgtcaacaaagcctatcgtgttgatgttttttattgacca 2603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143906776 agagagcagttttccaacgatgtcaacaaagcctatcgtgttgatgttttttattgacca 143906717
Query: 2604 ttttagcaacatgctaataaaatttcaaattgaaatttttattttcatggctttaatcca 2663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143906716 ttttagcaacatgctaataaaatttcaaattgaaatttttattttcatggctttaatcca 143906657
Query: 2664 tgatagtttaaatactgggggccattaagagtggatttagctaagagcttagctaacatt 2723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143906656 tgatagtttaaatactgggggccattaagagtggatttagctaagagcttagctaacatt 143906597
Query: 2724 gccttttcactctatttttctcaaatctcatgagaattctgtttttgaatattgtagtta 2783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143906596 gccttttcactctatttttctcaaatctcatgagaattctgtttttgaatattgtagtta 143906537
Query: 2784 attgttttggctttaaaggcagccctggtaatggtggaattgttaaccaatgtgtgtatt 2843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143906536 attgttttggctttaaaggcagccctggtaatggtggaattgttaaccaatgtgtgtatt 143906477
Query: 2844 gtgctgaatttctgtcagttaaggggtttactgctttgttggaaa-tgctaatgggttcc 2902
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 143906476 gtgctgaatttctgtcagttaaggggtttactgctttgttggaaattgctagtgggttcc 143906417
Query: 2903 atgatgtttcttttctccagg-tgtataccataaacattccgtatttgcctttctatttt 2961
||||||||||||||||||||| |||||||||||| ||| |||||||||| ||||||||||
Sbjct: 143906416 atgatgtttcttttctccaggttgtataccataaccatcccgtatttgcatttctatttt 143906357
Query: 2962 tcttccctgtccccctgattttcgt 2986
|||| ||||||||||||||||||||
Sbjct: 143906356 tctt-cctgtccccctgattttcgt 143906333
Score = 858 bits (433), Expect = 0.0
Identities = 433/433 (100%)
Strand = Plus / Minus
Query: 583 gatcccctctcctggccctcacctcgccgcgtcattgatgggcaaccaactggaccgcat 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143908737 gatcccctctcctggccctcacctcgccgcgtcattgatgggcaaccaactggaccgcat 143908678
Query: 643 cacccacctcaactacagcgaattgcccacaggggatccgtcggggatcgagaaggacga 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143908677 cacccacctcaactacagcgaattgcccacaggggatccgtcggggatcgagaaggacga 143908618
Query: 703 gctgcgggtcggggtcgcctacttcttctcggatgaggaagaggacctggacgaacgcgg 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143908617 gctgcgggtcggggtcgcctacttcttctcggatgaggaagaggacctggacgaacgcgg 143908558
Query: 763 ccagcccgacaagtttggcgtgaagggccccccgggctgcgctccgtgcccagagagccc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143908557 ccagcccgacaagtttggcgtgaagggccccccgggctgcgctccgtgcccagagagccc 143908498
Query: 823 cagccgccaccaccaccacctgctgcaccagctggtcctcaacgaaactcagttctccgc 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143908497 cagccgccaccaccaccacctgctgcaccagctggtcctcaacgaaactcagttctccgc 143908438
Query: 883 ctttcggggccaggaatgcatcttttccaaagtgagcggcggccctcagggcgccgacct 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143908437 ctttcggggccaggaatgcatcttttccaaagtgagcggcggccctcagggcgccgacct 143908378
Query: 943 gagcgtctacgcggtcacggcgctgcccgcactctgcgagcccggcgacctgctggagct 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143908377 gagcgtctacgcggtcacggcgctgcccgcactctgcgagcccggcgacctgctggagct 143908318
Query: 1003 gctgtggctgcaa 1015
|||||||||||||
Sbjct: 143908317 gctgtggctgcaa 143908305
Score = 749 bits (378), Expect = 0.0
Identities = 378/378 (100%)
Strand = Plus / Minus
Query: 206 cgagctgctcccctccccctctggaagagattgacgagggctgggcaccagccccaacca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143910093 cgagctgctcccctccccctctggaagagattgacgagggctgggcaccagccccaacca 143910034
Query: 266 atgagcgcatcccggggcgggccctggaaccagcggctcaggctacttagagtcgtccgc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143910033 atgagcgcatcccggggcgggccctggaaccagcggctcaggctacttagagtcgtccgc 143909974
Query: 326 ggggctgaaggaaaccagaaccgagtcgggactgctcaggtggagcccgcagtcctgcca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143909973 ggggctgaaggaaaccagaaccgagtcgggactgctcaggtggagcccgcagtcctgcca 143909914
Query: 386 gcgccaaccagcaggcgcaccaacaccgctccggagactgcaccgcaccgatccgcgcgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143909913 gcgccaaccagcaggcgcaccaacaccgctccggagactgcaccgcaccgatccgcgcgg 143909854
Query: 446 gacagagcggagccgcagccccacgcgtcgcccaggacccgctcgccagcactacctcct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143909853 gacagagcggagccgcagccccacgcgtcgcccaggacccgctcgccagcactacctcct 143909794
Query: 506 ccggactaccgccgcagcacccatggggaccaggagactttaaaggagtttggggtttcg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143909793 ccggactaccgccgcagcacccatggggaccaggagactttaaaggagtttggggtttcg 143909734
Query: 566 ggagcagggaaatcacgg 583
||||||||||||||||||
Sbjct: 143909733 ggagcagggaaatcacgg 143909716
Score = 196 bits (99), Expect = 5e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 1 ttcattgctagagtcttttctcccggaacacagaaaacctgcggactgtgctctcagtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143910298 ttcattgctagagtcttttctcccggaacacagaaaacctgcggactgtgctctcagtta 143910239
Query: 61 caatcggtcagagcagcagcgcagcgcagctgtacggaa 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 143910238 caatcggtcagagcagcagcgcagcgcagctgtacggaa 143910200
>Sscrofa_Chr04
|| Length = 143465943
Score = 65.9 bits (33), Expect = 1e-07
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 1250 aactcggagagcttcgccgcctggtgccgctttggcaagcgggagttca 1298
||||| ||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 13885232 aactctgagagcttcgccgcctggtgccgctacggcaagcgtgagttca 13885280
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 78,912,015
Number of extensions: 965
Number of successful extensions: 965
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 960
Number of HSP's successfully gapped: 5
Length of query: 3002
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2980
Effective length of database: 2,808,408,574
Effective search space: 8369057550520
Effective search space used: 8369057550520
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)