Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012468
(1907 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus]. 1021 0.0
Alignment gi|NP_001033175.1| T-complex protein 1 subunit alpha [Bos tauru... 297 2e-80
Alignment gi|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus]. 296 6e-80
Alignment gi|NP_001033283.1| T-complex protein 1 subunit delta [Bos tauru... 295 7e-80
Alignment gi|NP_001017934.2| T-complex protein 1 subunit gamma [Bos tauru... 285 1e-76
Alignment gi|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsil... 251 1e-66
Alignment gi|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subun... 251 1e-66
Alignment gi|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subun... 251 1e-66
Alignment gi|NP_001029714.1| T-complex protein 1 subunit zeta [Bos taurus]. 239 8e-63
Alignment gi|NP_001029814.1| T-complex protein 1 subunit zeta-2 [Bos taur... 229 8e-60
>ref|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus].
Length = 543
Score = 1021 bits (2641), Expect = 0.0
Identities = 524/528 (99%), Positives = 526/528 (99%)
Frame = +2
Query: 68 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 247
MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN
Sbjct: 1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 60
Query: 248 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 427
DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI
Sbjct: 61 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 120
Query: 428 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 607
IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV
Sbjct: 121 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 180
Query: 608 DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 787
DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL
Sbjct: 181 DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 240
Query: 788 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVAT 967
NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLE+I+HSGAKVVLSKLPIGDVAT
Sbjct: 241 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVAT 300
Query: 968 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF 1147
QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF
Sbjct: 301 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF 360
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL
Sbjct: 361 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN 1507
RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG WYGVDIN
Sbjct: 421 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDIN 480
Query: 1508 NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
EDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD
Sbjct: 481 TEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 528
>ref|NP_001033175.1| T-complex protein 1 subunit alpha [Bos taurus].
Length = 556
Score = 297 bits (761), Expect = 2e-80
Identities = 189/537 (35%), Positives = 291/537 (54%), Gaps = 22/537 (4%)
Frame = +2
Query: 107 DSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVH 286
D S G N+ A IA V+++LGP G+DK++VD G TI+NDGATILKLL+V H
Sbjct: 10 DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 69
Query: 287 PAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAV 466
PAAK L ++A QD EVGDGTTSV ++AAE LK V++ +HP +I +R A + AV
Sbjct: 70 PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 129
Query: 467 NKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML------- 625
I E + E R L A T++SSK+I FFA +VVDAV+ +
Sbjct: 130 RYISENLIINTDE---LGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRG 186
Query: 626 DDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELEL 805
+ I + K G + ES L+ G A G + PK+ N IA L+ L+
Sbjct: 187 QPRYPVNSINVLKAHGRSQMESMLINGYALN---CVVGSQGMPKRIVNAKIACLDFSLQK 243
Query: 806 KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQYFADR 985
K ++ + E I E +I +++++I +GA V+L+ I D+ +YF +
Sbjct: 244 TKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEA 303
Query: 986 DMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSD------VLGRCQVFEETQIGGERYNF 1147
RV + DLKR A G ++ +++ L + +LG+ + + +I +
Sbjct: 304 GAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELIL 363
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
+ ++ILRG + +E ERSLHDA+ +V+R +++ SVV GGGA+E LS YL
Sbjct: 364 IKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYL 423
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGT------- 1486
+Y+ ++ ++QL I +A++L +IP L NA D+T+++ KLRA H +
Sbjct: 424 ENYATSMGSREQLAIAEFARSLPVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNL 483
Query: 1487 -WYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTVD 1651
W G+D+ N DN +A V+EP +V++ +L A+EAA I+ +D+ IK +P S D
Sbjct: 484 KWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 540
>ref|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus].
Length = 535
Score = 296 bits (757), Expect = 6e-80
Identities = 183/527 (34%), Positives = 289/527 (54%), Gaps = 4/527 (0%)
Frame = +2
Query: 80 PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKAT--ISNDG 253
PV + K G D + +S+ I + V++TLGP+GMDK+++ A+ ++NDG
Sbjct: 8 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 67
Query: 254 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 433
ATILK + V +PAAK LVD+++ QD EVGDGTTSVT+LAAE L++ + + + +HPQ II
Sbjct: 68 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTII 127
Query: 434 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 613
+R AT+ A + AV D+V+ R+ L A T LSSKL++ K F K+ V+A
Sbjct: 128 AGWREATKAARQALLNSAVD-HGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA 186
Query: 614 VMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNV 793
V+ L L+ I + K GG+L +S L G K QPK+ N I + N
Sbjct: 187 VLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN----QPKRIENAKILIANT 242
Query: 794 ELEL-KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQ 970
++ K + + +RV + I AE + +K+ERI G +++ I + Q
Sbjct: 243 GMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQ 302
Query: 971 YFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFF 1150
F + ++R + GG I ++ + LG C++ EE IG ++ F
Sbjct: 303 LFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHF 362
Query: 1151 TGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLR 1330
+G + CTI+LRG +Q ++E ERSLHDA+ ++ + +K+ V GGG EM ++ +
Sbjct: 363 SGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVT 422
Query: 1331 DYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINN 1510
+ PGK+ + + +YAKAL ++P + DNAG+D+ +++ +LRA H++G T G+D+
Sbjct: 423 QLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKE 482
Query: 1511 EDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTV 1648
I D + E V+ L +A+EAA +I+ VD IK PR V
Sbjct: 483 GTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRV 529
>ref|NP_001033283.1| T-complex protein 1 subunit delta [Bos taurus].
Length = 542
Score = 295 bits (756), Expect = 7e-80
Identities = 177/510 (34%), Positives = 291/510 (57%), Gaps = 13/510 (2%)
Frame = +2
Query: 137 SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIA 316
SNISA + +A+A+RT+LGP+GMDK+I DG+G TI+NDGATILK + V+HPAA+ LV+++
Sbjct: 39 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELS 98
Query: 317 KSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTV 496
K+QD E GDGTTSV ++A L +++G+HP II +F Q A+ K EI +
Sbjct: 99 KAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESF----QKALEKGIEILTDM 154
Query: 497 KKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDD-----LLQLKMIGIK 661
+ +++ R+ L A T+L+SK++SQ + + M VDAVM + D + L+ I I
Sbjct: 155 SRPEELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIV 214
Query: 662 KVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELEL-KAEKDNAEIRV 838
K GG +++ +LV G+ + + +G + I L+ L K + DN +I V
Sbjct: 215 KKLGGTIDDCELVEGLVLTQKVANSGI----TRVEKAKIGLIQFCLSAPKTDMDN-QIVV 269
Query: 839 HTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPI-----GDVATQYFADRDMFCAG 1003
++ E + + +++I +G V+L + I D+A + +
Sbjct: 270 SDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVK 329
Query: 1004 RVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGE-RYNFFTGCPK-AKTC 1177
+ ED++ G V+ ++D+LG ++ EE + G + TGC KT
Sbjct: 330 DIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTV 389
Query: 1178 TIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGK 1357
TI++RG + +EE ERS+HDA+ ++R +K +++AGGGA E+EL+ L +YSRT+ G
Sbjct: 390 TIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGM 449
Query: 1358 QQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEA 1537
+ I A+A A+E+IP L +NAG + + + +LR RHAQG G+++ I++ E
Sbjct: 450 ESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEE 509
Query: 1538 FVWEPAMVRINALTAASEAACLIVSVDETI 1627
V +P +V ++ALT A+E I+ +D+ +
Sbjct: 510 QVVQPLLVSVSALTLATETVRSILKIDDVV 539
>ref|NP_001017934.2| T-complex protein 1 subunit gamma [Bos taurus].
Length = 545
Score = 285 bits (729), Expect = 1e-76
Identities = 168/534 (31%), Positives = 283/534 (52%), Gaps = 10/534 (1%)
Frame = +2
Query: 80 PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGAT 259
PV++L + T G NI+A + IA+ +RT LGP+ M K+++D G ++NDG
Sbjct: 6 PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNA 65
Query: 260 ILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRA 439
IL+ + V HPAAK++++I+++QD EVGDGTTSV +LA E L + ++E+ +HP ++I A
Sbjct: 66 ILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISA 125
Query: 440 FRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVM 619
+R A ++ +K+I++ V ++ ++ +++++K+IS+ + + +DAV
Sbjct: 126 YRKALDDMISTLKKISIPVDTSNRDTMLNIIN----SSITTKVISRWSSLACNIALDAVK 181
Query: 620 MLD-------DLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMI 778
+ ++ K ++K+ GG +E+S ++ GV K ++ K NP I
Sbjct: 182 TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIK---NPRI 238
Query: 779 ALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGD 958
LL+ LE K + +I + ED+ I+ E + E I VV+++ I D
Sbjct: 239 VLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISD 298
Query: 959 VATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGR-CQVFEETQIGGE 1135
+A Y ++ RV + D R ACG I + L + +G + E +IG E
Sbjct: 299 LAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDE 358
Query: 1136 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 1315
+ F T C K CTI+LRG +++ + E ER+L DA+ + R + + +V GGGA EM +
Sbjct: 359 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 418
Query: 1316 SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG--TW 1489
+ L + S+ + G +Q A A+ALE+IPR L N G +L LRA+H Q TW
Sbjct: 419 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 478
Query: 1490 YGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
GV+ + D E +WEP V++ A E A L++ +D+ + + D
Sbjct: 479 -GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGD 531
>ref|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsilon) [Bos taurus].
Length = 541
Score = 251 bits (642), Expect = 1e-66
Identities = 153/526 (29%), Positives = 285/526 (54%), Gaps = 9/526 (1%)
Frame = +2
Query: 80 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 253
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 15 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 74
Query: 254 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 433
ATIL ++DV H AK +V+++KSQD E+GDGTT V +LA L++ + ++ G+HP I
Sbjct: 75 ATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIA 134
Query: 434 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 613
+ A ++A+ + +I+ +V + ++ + L + A T L SK+++ A++ V+A
Sbjct: 135 DGYEQAARIAIEHLDKISDSVLVD--MKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 192
Query: 614 VMMLDDL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIA 781
V+ + D+ + ++I ++ GG LE+++L+ GV K FS+ PK+ + IA
Sbjct: 193 VLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 249
Query: 782 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDV 961
+L E K ++ V +VED++A+ E + + +I +GA + + + D
Sbjct: 250 ILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDE 309
Query: 962 ATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIG--GE 1135
A D+ V +++ +A GG I + L+++ LG + +E G +
Sbjct: 310 ANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKD 369
Query: 1136 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 1315
+ C ++ TI +RGG + +EE +RSLHDA+ ++R I+++ VV GGGA E+
Sbjct: 370 KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISC 429
Query: 1316 SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA-QGGTWY 1492
+ + + P +Q + A+A ALE+IP L +N+G + + ++RAR +
Sbjct: 430 ALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPAL 489
Query: 1493 GVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK 1630
G+D ++ D V E + + ++ A++ +I+ +D+ K
Sbjct: 490 GIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRK 535
>ref|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
taurus].
Length = 541
Score = 251 bits (642), Expect = 1e-66
Identities = 153/526 (29%), Positives = 285/526 (54%), Gaps = 9/526 (1%)
Frame = +2
Query: 80 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 253
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 15 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 74
Query: 254 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 433
ATIL ++DV H AK +V+++KSQD E+GDGTT V +LA L++ + ++ G+HP I
Sbjct: 75 ATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIA 134
Query: 434 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 613
+ A ++A+ + +I+ +V + ++ + L + A T L SK+++ A++ V+A
Sbjct: 135 DGYEQAARIAIEHLDKISDSVLVD--MKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 192
Query: 614 VMMLDDL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIA 781
V+ + D+ + ++I ++ GG LE+++L+ GV K FS+ PK+ + IA
Sbjct: 193 VLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 249
Query: 782 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDV 961
+L E K ++ V +VED++A+ E + + +I +GA + + + D
Sbjct: 250 ILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDE 309
Query: 962 ATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIG--GE 1135
A D+ V +++ +A GG I + L+++ LG + +E G +
Sbjct: 310 ANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKD 369
Query: 1136 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 1315
+ C ++ TI +RGG + +EE +RSLHDA+ ++R I+++ VV GGGA E+
Sbjct: 370 KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISC 429
Query: 1316 SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA-QGGTWY 1492
+ + + P +Q + A+A ALE+IP L +N+G + + ++RAR +
Sbjct: 430 ALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPAL 489
Query: 1493 GVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK 1630
G+D ++ D V E + + ++ A++ +I+ +D+ K
Sbjct: 490 GIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRK 535
>ref|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
taurus].
Length = 541
Score = 251 bits (642), Expect = 1e-66
Identities = 153/526 (29%), Positives = 285/526 (54%), Gaps = 9/526 (1%)
Frame = +2
Query: 80 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 253
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 15 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 74
Query: 254 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 433
ATIL ++DV H AK +V+++KSQD E+GDGTT V +LA L++ + ++ G+HP I
Sbjct: 75 ATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIA 134
Query: 434 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 613
+ A ++A+ + +I+ +V + ++ + L + A T L SK+++ A++ V+A
Sbjct: 135 DGYEQAARIAIEHLDKISDSVLVD--MKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 192
Query: 614 VMMLDDL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIA 781
V+ + D+ + ++I ++ GG LE+++L+ GV K FS+ PK+ + IA
Sbjct: 193 VLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 249
Query: 782 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDV 961
+L E K ++ V +VED++A+ E + + +I +GA + + + D
Sbjct: 250 ILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDE 309
Query: 962 ATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIG--GE 1135
A D+ V +++ +A GG I + L+++ LG + +E G +
Sbjct: 310 ANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKD 369
Query: 1136 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 1315
+ C ++ TI +RGG + +EE +RSLHDA+ ++R I+++ VV GGGA E+
Sbjct: 370 KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISC 429
Query: 1316 SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA-QGGTWY 1492
+ + + P +Q + A+A ALE+IP L +N+G + + ++RAR +
Sbjct: 430 ALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPAL 489
Query: 1493 GVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK 1630
G+D ++ D V E + + ++ A++ +I+ +D+ K
Sbjct: 490 GIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRK 535
>ref|NP_001029714.1| T-complex protein 1 subunit zeta [Bos taurus].
Length = 531
Score = 239 bits (609), Expect = 8e-63
Identities = 146/518 (28%), Positives = 268/518 (51%), Gaps = 12/518 (2%)
Frame = +2
Query: 131 LVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVD 310
L NISA + + + +RT LGP+G K++V G G ++ DG +L + + HP A +
Sbjct: 20 LAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAK 79
Query: 311 IAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAV 490
+A +QD GDGTTS L+ E LKQ Y+ EGLHP+II F A + A+ ++++ V
Sbjct: 80 VATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKV 139
Query: 491 TVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML---DDLLQLKMIGIK 661
+ K R+ L A T+L +K+ ++ + VVD+++ + D+ + L M+ I
Sbjct: 140 S-----KEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLFMVEIM 194
Query: 662 KVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVH 841
+++ + ++ L+ G+ + + K+ + I NV LE + + N+
Sbjct: 195 EMKHKSETDTSLIRGLVLDHGARHPDMK---KRVEDAYILTCNVSLEYEKTEVNSGFFYK 251
Query: 842 TVEDYQAIVDAEWNILYDKLERIYHSGAKV---------VLSKLPIGDVATQYFADRDMF 994
+ E+ + +V AE + D++++I KV V+++ I + A +
Sbjct: 252 SAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGII 311
Query: 995 CAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKT 1174
R +++R +ACGG S++ L+ D LG + E +G E++ F C ++
Sbjct: 312 ALRRAKRRNMERLTLACGGIALNSLDDLNPDCLGHAGLVYEYTLGEEKFTFIEKCNNPRS 371
Query: 1175 CTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPG 1354
T++++G + + + + ++ D + V+ AI + VV G GA+E+ +++ L Y ++ G
Sbjct: 372 VTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKG 431
Query: 1355 KQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFE 1534
+ QL + A+A AL IIP+ L N+GFD L K++A H++ G GVD+N + E
Sbjct: 432 RAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGEPMVAAE 491
Query: 1535 AFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTV 1648
A +W+ V+ L + + A I+ VDE ++ S++
Sbjct: 492 AGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSL 529
>ref|NP_001029814.1| T-complex protein 1 subunit zeta-2 [Bos taurus].
Length = 531
Score = 229 bits (583), Expect = 8e-60
Identities = 148/518 (28%), Positives = 265/518 (51%), Gaps = 12/518 (2%)
Frame = +2
Query: 131 LVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVD 310
L NI A + + + +RT LGP+G K++V G G ++ DG +L + + HP A +
Sbjct: 20 LAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDVKLTKDGNVLLHEMQIQHPTASLIAK 79
Query: 311 IAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAV 490
+A +QD GDGTTS L+ E LKQ Y+ EGLHP+II F A A+ +++ V
Sbjct: 80 VATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEIAKIKALEVLEQ--V 137
Query: 491 TVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML---DDLLQLKMIGIK 661
+KKE K R++ A T+L +K+ Q + VVD+V+ + + + L M+ I
Sbjct: 138 KIKKEMK---REIHLDVARTSLQTKVHPQLADVLTEAVVDSVLAIRRPNYPIDLFMVEIM 194
Query: 662 KVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVH 841
+++ + +++L+ G+ + + K+ + I NV LE + + ++
Sbjct: 195 EMKHKSETDTKLIKGLVLDHGARHPDMK---KRVDDAFILTCNVSLEYEKTEVSSGFFYK 251
Query: 842 TVEDYQAIVDAEWNILYDKLERIYHSGAKV---------VLSKLPIGDVATQYFADRDMF 994
T E+ + +V AE + D++++I KV V+++ I + A +
Sbjct: 252 TAEEKEKLVKAERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDALAKHGIL 311
Query: 995 CAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKT 1174
R +++R +ACGG SV LS D LG + E +G E+Y F C ++
Sbjct: 312 ALRRAKRRNMERLSLACGGVAVNSVEDLSVDCLGHAGLVYEYTLGEEKYTFIEDCINPRS 371
Query: 1175 CTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPG 1354
T++++G + + + + ++ D + ++ AI++ VV G GA+E+ +++ L Y TI G
Sbjct: 372 VTLLVKGPNKHTLTQIKDAVRDGLRAIKNAIEDGCVVPGAGAVEVVIAEALVTYKHTIQG 431
Query: 1355 KQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFE 1534
+ +L + A+A AL IIP+ L N+G+D L K++A H+ G+D+N + +
Sbjct: 432 RARLGVQAFADALLIIPKVLAQNSGYDLQETLVKVQAEHSNSKQPVGIDLNTGEPMVAAD 491
Query: 1535 AFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTV 1648
A VW+ V+ L + + A I+ VDE ++ S++
Sbjct: 492 AGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSL 529
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 73,144,163
Number of extensions: 2153887
Number of successful extensions: 6850
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 6800
Number of HSP's successfully gapped: 24
Length of query: 635
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 527
Effective length of database: 14,107,870
Effective search space: 7434847490
Effective search space used: 7434847490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012468
(1907 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848245.1| PREDICTED: similar to T-complex protein 1, eta ... 1018 0.0
Alignment gi|XP_852889.1| PREDICTED: similar to T-complex protein 1, eta ... 1018 0.0
Alignment gi|XP_866598.1| PREDICTED: similar to T-complex protein 1, eta ... 1012 0.0
Alignment gi|XP_866608.1| PREDICTED: similar to T-complex protein 1, eta ... 1012 0.0
Alignment gi|XP_850875.1| PREDICTED: similar to T-complex protein 1, eta ... 1003 0.0
Alignment gi|XP_866587.1| PREDICTED: similar to T-complex protein 1, eta ... 933 0.0
Alignment gi|XP_855760.1| PREDICTED: similar to T-complex protein 1, eta ... 871 0.0
Alignment gi|XP_862576.1| PREDICTED: similar to T-complex protein 1, eta ... 856 0.0
Alignment gi|XP_866560.1| PREDICTED: similar to T-complex protein 1, eta ... 849 0.0
Alignment gi|XP_866574.1| PREDICTED: similar to T-complex protein 1, eta ... 769 0.0
>ref|XP_848245.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 1
[Canis familiaris].
Length = 543
Score = 1018 bits (2631), Expect = 0.0
Identities = 521/528 (98%), Positives = 527/528 (99%)
Frame = +2
Query: 68 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 247
MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN
Sbjct: 1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 60
Query: 248 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 427
DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI
Sbjct: 61 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 120
Query: 428 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 607
IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV
Sbjct: 121 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 180
Query: 608 DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 787
DAV+MLD+LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKY+NPMIALL
Sbjct: 181 DAVIMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIALL 240
Query: 788 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVAT 967
NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERI+HSGAKVVLSKLPIGDVAT
Sbjct: 241 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDVAT 300
Query: 968 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF 1147
QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALS+DVLGRCQVFEETQIGGERYNF
Sbjct: 301 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNF 360
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL
Sbjct: 361 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN 1507
RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG WYGVD+N
Sbjct: 421 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDVN 480
Query: 1508 NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD
Sbjct: 481 NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 528
>ref|XP_852889.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 2
[Canis familiaris].
Length = 543
Score = 1018 bits (2631), Expect = 0.0
Identities = 521/528 (98%), Positives = 527/528 (99%)
Frame = +2
Query: 68 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 247
MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN
Sbjct: 1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 60
Query: 248 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 427
DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI
Sbjct: 61 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 120
Query: 428 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 607
IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV
Sbjct: 121 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 180
Query: 608 DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 787
DAV+MLD+LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKY+NPMIALL
Sbjct: 181 DAVIMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIALL 240
Query: 788 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVAT 967
NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERI+HSGAKVVLSKLPIGDVAT
Sbjct: 241 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDVAT 300
Query: 968 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF 1147
QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALS+DVLGRCQVFEETQIGGERYNF
Sbjct: 301 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNF 360
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL
Sbjct: 361 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN 1507
RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG WYGVD+N
Sbjct: 421 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDVN 480
Query: 1508 NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD
Sbjct: 481 NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 528
>ref|XP_866598.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 9
[Canis familiaris].
Length = 546
Score = 1012 bits (2617), Expect = 0.0
Identities = 521/531 (98%), Positives = 527/531 (99%), Gaps = 3/531 (0%)
Frame = +2
Query: 68 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 247
MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN
Sbjct: 1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 60
Query: 248 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 427
DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI
Sbjct: 61 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 120
Query: 428 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 607
IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV
Sbjct: 121 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 180
Query: 608 DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 787
DAV+MLD+LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKY+NPMIALL
Sbjct: 181 DAVIMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIALL 240
Query: 788 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVAT 967
NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERI+HSGAKVVLSKLPIGDVAT
Sbjct: 241 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDVAT 300
Query: 968 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF 1147
QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALS+DVLGRCQVFEETQIGGERYNF
Sbjct: 301 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNF 360
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL
Sbjct: 361 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQ---GGTWYGV 1498
RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQ GG WYGV
Sbjct: 421 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQVPGGGMWYGV 480
Query: 1499 DINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
D+NNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD
Sbjct: 481 DVNNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 531
>ref|XP_866608.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 10
[Canis familiaris].
Length = 547
Score = 1012 bits (2616), Expect = 0.0
Identities = 521/532 (97%), Positives = 527/532 (99%), Gaps = 4/532 (0%)
Frame = +2
Query: 68 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 247
MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN
Sbjct: 1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 60
Query: 248 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 427
DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI
Sbjct: 61 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 120
Query: 428 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 607
IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV
Sbjct: 121 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 180
Query: 608 DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 787
DAV+MLD+LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKY+NPMIALL
Sbjct: 181 DAVIMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIALL 240
Query: 788 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVAT 967
NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERI+HSGAKVVLSKLPIGDVAT
Sbjct: 241 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDVAT 300
Query: 968 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF 1147
QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALS+DVLGRCQVFEETQIGGERYNF
Sbjct: 301 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNF 360
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL
Sbjct: 361 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQ----GGTWYG 1495
RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQ GG WYG
Sbjct: 421 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGLKRGGMWYG 480
Query: 1496 VDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
VD+NNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD
Sbjct: 481 VDVNNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 532
>ref|XP_850875.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 2
[Canis familiaris].
Length = 543
Score = 1003 bits (2592), Expect = 0.0
Identities = 514/528 (97%), Positives = 522/528 (98%)
Frame = +2
Query: 68 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 247
MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN
Sbjct: 1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 60
Query: 248 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 427
DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI
Sbjct: 61 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 120
Query: 428 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 607
IIRAFRTATQLAVNKIKEI VTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV
Sbjct: 121 IIRAFRTATQLAVNKIKEIVVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 180
Query: 608 DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 787
DAV+MLD+LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKY+NPMIALL
Sbjct: 181 DAVIMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIALL 240
Query: 788 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVAT 967
NVELELKAEKDNA+IRVHTVEDYQAIVDAEWNILYDKLERI+HSGAKVVLSKLPIGDVAT
Sbjct: 241 NVELELKAEKDNAKIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDVAT 300
Query: 968 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF 1147
QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALS+DVLGRCQVFEE QIGGERYNF
Sbjct: 301 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQVFEEMQIGGERYNF 360
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL
Sbjct: 361 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN 1507
RDYSRTIPGKQQLLIGAYAKALEIIP QLCDNAGFDATNILNKLRARHAQGG WYGVD+N
Sbjct: 421 RDYSRTIPGKQQLLIGAYAKALEIIPCQLCDNAGFDATNILNKLRARHAQGGMWYGVDVN 480
Query: 1508 NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
NEDIADNFEAFVWEPAMV INALTAASEAACLIVSVD+TIKNP STVD
Sbjct: 481 NEDIADNFEAFVWEPAMVHINALTAASEAACLIVSVDKTIKNPCSTVD 528
>ref|XP_866587.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 8
[Canis familiaris].
Length = 499
Score = 933 bits (2412), Expect = 0.0
Identities = 477/484 (98%), Positives = 483/484 (99%)
Frame = +2
Query: 200 MDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEF 379
MDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEF
Sbjct: 1 MDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEF 60
Query: 380 LKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALS 559
LKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALS
Sbjct: 61 LKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALS 120
Query: 560 SKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAG 739
SKLISQQKAFFAKMVVDAV+MLD+LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAG
Sbjct: 121 SKLISQQKAFFAKMVVDAVIMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAG 180
Query: 740 FEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHS 919
FEMQPKKY+NPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERI+HS
Sbjct: 181 FEMQPKKYNNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHS 240
Query: 920 GAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGR 1099
GAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALS+DVLGR
Sbjct: 241 GAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGR 300
Query: 1100 CQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDS 1279
CQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDS
Sbjct: 301 CQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDS 360
Query: 1280 VVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKL 1459
VVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKL
Sbjct: 361 VVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKL 420
Query: 1460 RARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 1639
RARHAQGG WYGVD+NNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR
Sbjct: 421 RARHAQGGMWYGVDVNNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 480
Query: 1640 STVD 1651
STVD
Sbjct: 481 STVD 484
>ref|XP_855760.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 4
[Canis familiaris].
Length = 489
Score = 871 bits (2251), Expect = 0.0
Identities = 464/528 (87%), Positives = 469/528 (88%)
Frame = +2
Query: 68 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 247
MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN
Sbjct: 1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 60
Query: 248 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 427
DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI
Sbjct: 61 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 120
Query: 428 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 607
IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV
Sbjct: 121 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 180
Query: 608 DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 787
DAV+MLD+LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKY+NPMIALL
Sbjct: 181 DAVIMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIALL 240
Query: 788 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVAT 967
NVELELKAEKDNAEIRVHTVEDYQAI
Sbjct: 241 NVELELKAEKDNAEIRVHTVEDYQAI---------------------------------- 266
Query: 968 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF 1147
R M G GSIQTSVNALS+DVLGRCQVFEETQIGGERYNF
Sbjct: 267 -----RTMMACG---------------GSIQTSVNALSADVLGRCQVFEETQIGGERYNF 306
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL
Sbjct: 307 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 366
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN 1507
RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG WYGVD+N
Sbjct: 367 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDVN 426
Query: 1508 NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD
Sbjct: 427 NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 474
>ref|XP_862576.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 3
[Canis familiaris].
Length = 489
Score = 856 bits (2212), Expect = 0.0
Identities = 457/528 (86%), Positives = 464/528 (87%)
Frame = +2
Query: 68 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 247
MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN
Sbjct: 1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 60
Query: 248 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 427
DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI
Sbjct: 61 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 120
Query: 428 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 607
IIRAFRTATQLAVNKIKEI VTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV
Sbjct: 121 IIRAFRTATQLAVNKIKEIVVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 180
Query: 608 DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 787
DAV+MLD+LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKY+NPMIALL
Sbjct: 181 DAVIMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIALL 240
Query: 788 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVAT 967
NVELELKAEKDNA+IRVHTVEDYQAI
Sbjct: 241 NVELELKAEKDNAKIRVHTVEDYQAI---------------------------------- 266
Query: 968 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF 1147
R M G GSIQTSVNALS+DVLGRCQVFEE QIGGERYNF
Sbjct: 267 -----RTMMACG---------------GSIQTSVNALSADVLGRCQVFEEMQIGGERYNF 306
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL
Sbjct: 307 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 366
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN 1507
RDYSRTIPGKQQLLIGAYAKALEIIP QLCDNAGFDATNILNKLRARHAQGG WYGVD+N
Sbjct: 367 RDYSRTIPGKQQLLIGAYAKALEIIPCQLCDNAGFDATNILNKLRARHAQGGMWYGVDVN 426
Query: 1508 NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
NEDIADNFEAFVWEPAMV INALTAASEAACLIVSVD+TIKNP STVD
Sbjct: 427 NEDIADNFEAFVWEPAMVHINALTAASEAACLIVSVDKTIKNPCSTVD 474
>ref|XP_866560.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 6
[Canis familiaris].
Length = 456
Score = 849 bits (2193), Expect = 0.0
Identities = 432/439 (98%), Positives = 438/439 (99%)
Frame = +2
Query: 335 VGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKV 514
VGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKV
Sbjct: 3 VGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKV 62
Query: 515 EQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQ 694
EQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAV+MLD+LLQLKMIGIKKVQGGALEESQ
Sbjct: 63 EQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVIMLDELLQLKMIGIKKVQGGALEESQ 122
Query: 695 LVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDA 874
LVAGVAFKKTFSYAGFEMQPKKY+NPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDA
Sbjct: 123 LVAGVAFKKTFSYAGFEMQPKKYNNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDA 182
Query: 875 EWNILYDKLERIYHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGS 1054
EWNILYDKLERI+HSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGS
Sbjct: 183 EWNILYDKLERIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGS 242
Query: 1055 IQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSL 1234
IQTSVNALS+DVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSL
Sbjct: 243 IQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSL 302
Query: 1235 HDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQL 1414
HDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQL
Sbjct: 303 HDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQL 362
Query: 1415 CDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEA 1594
CDNAGFDATNILNKLRARHAQGG WYGVD+NNEDIADNFEAFVWEPAMVRINALTAASEA
Sbjct: 363 CDNAGFDATNILNKLRARHAQGGMWYGVDVNNEDIADNFEAFVWEPAMVRINALTAASEA 422
Query: 1595 ACLIVSVDETIKNPRSTVD 1651
ACLIVSVDETIKNPRSTVD
Sbjct: 423 ACLIVSVDETIKNPRSTVD 441
>ref|XP_866574.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 7
[Canis familiaris].
Length = 474
Score = 769 bits (1986), Expect = 0.0
Identities = 396/401 (98%), Positives = 401/401 (100%)
Frame = +2
Query: 68 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 247
MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN
Sbjct: 1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 60
Query: 248 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 427
DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI
Sbjct: 61 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 120
Query: 428 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 607
IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV
Sbjct: 121 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 180
Query: 608 DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 787
DAV+MLD+LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKY+NPMIALL
Sbjct: 181 DAVIMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIALL 240
Query: 788 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVAT 967
NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERI+HSGAKVVLSKLPIGDVAT
Sbjct: 241 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDVAT 300
Query: 968 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF 1147
QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALS+DVLGRCQVFEETQIGGERYNF
Sbjct: 301 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNF 360
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIK 1270
FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIK
Sbjct: 361 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIK 401
Score = 119 bits (299), Expect = 8e-27
Identities = 57/62 (91%), Positives = 59/62 (95%)
Frame = +2
Query: 1466 RHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRST 1645
R +GG WYGVD+NNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRST
Sbjct: 398 RAIKGGMWYGVDVNNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRST 457
Query: 1646 VD 1651
VD
Sbjct: 458 VD 459
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 76,013,278
Number of extensions: 2160488
Number of successful extensions: 7037
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 6948
Number of HSP's successfully gapped: 73
Length of query: 635
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 526
Effective length of database: 15,240,880
Effective search space: 8016702880
Effective search space used: 8016702880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012468
(1907 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa]. 1029 0.0
Alignment gi|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrof... 301 1e-81
Alignment gi|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa]. 297 1e-80
Alignment gi|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta... 291 9e-79
Alignment gi|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma... 288 1e-77
Alignment gi|XP_003355175.1| PREDICTED: t-complex protein 1 subunit gamma... 259 5e-69
Alignment gi|XP_001926412.3| PREDICTED: t-complex protein 1 subunit gamma... 242 5e-64
Alignment gi|XP_003124509.2| PREDICTED: t-complex protein 1 subunit zeta-... 237 2e-62
Alignment gi|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsil... 224 1e-58
Alignment gi|XP_003354567.1| PREDICTED: t-complex protein 1 subunit zeta-... 216 5e-56
>ref|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa].
Length = 543
Score = 1029 bits (2661), Expect = 0.0
Identities = 528/528 (100%), Positives = 528/528 (100%)
Frame = +2
Query: 68 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 247
MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN
Sbjct: 1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 60
Query: 248 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 427
DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI
Sbjct: 61 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 120
Query: 428 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 607
IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV
Sbjct: 121 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 180
Query: 608 DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 787
DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL
Sbjct: 181 DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 240
Query: 788 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVAT 967
NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVAT
Sbjct: 241 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVAT 300
Query: 968 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF 1147
QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF
Sbjct: 301 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF 360
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL
Sbjct: 361 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN 1507
RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN
Sbjct: 421 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN 480
Query: 1508 NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD
Sbjct: 481 NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 528
>ref|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrofa].
Length = 556
Score = 301 bits (770), Expect = 1e-81
Identities = 194/537 (36%), Positives = 291/537 (54%), Gaps = 22/537 (4%)
Frame = +2
Query: 107 DSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVH 286
D S G N+ A IA V+++LGP G+DK++VD G TI+NDGATILKLL+V H
Sbjct: 10 DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 69
Query: 287 PAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAV 466
PAAK L ++A QD EVGDGTTSV ++AAE LK V++ +HP +I +R A + AV
Sbjct: 70 PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 129
Query: 467 NKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML------- 625
I E + E R L A T++SSK+I FFA MVVDAV+ +
Sbjct: 130 RYISENLIINTDE---LGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRG 186
Query: 626 DDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELEL 805
+ I I K G + ES L+ G A G + PK+ N IA L+ L+
Sbjct: 187 QPRYPVNSINILKAHGRSQTESMLINGYALN---CVVGSQGMPKRIVNAKIACLDFSLQK 243
Query: 806 KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQYFADR 985
K ++ + E I E +I +++++I +GA V+L+ I D+ +YF +
Sbjct: 244 TKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVET 303
Query: 986 DMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSD------VLGRCQVFEETQIGGERYNF 1147
RV + DLKR A G +I +++ L + +LG+ + + +I +
Sbjct: 304 GAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELIL 363
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
+ +IILRG + +E ERSLHDA+ +VRR +++ SVV GGGA+E LS YL
Sbjct: 364 IKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYL 423
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGT------- 1486
+Y+ ++ ++QL I +A++L +IP L NA D+T+++ KLRA H +
Sbjct: 424 ENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNL 483
Query: 1487 -WYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTVD 1651
W G+D+ N DN +A V+EP +V++ +L A+EAA I+ +D+ IK +P S D
Sbjct: 484 KWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 540
>ref|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa].
Length = 535
Score = 297 bits (761), Expect = 1e-80
Identities = 183/527 (34%), Positives = 289/527 (54%), Gaps = 4/527 (0%)
Frame = +2
Query: 80 PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKAT--ISNDG 253
PV + K G D + +S+ I + V++TLGP+GMDK+++ A+ ++NDG
Sbjct: 8 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 67
Query: 254 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 433
ATILK + V +PAAK LVD+++ QD EVGDGTTSVT+LAAE L++ + + + +HPQ II
Sbjct: 68 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTII 127
Query: 434 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 613
+R AT+ A + AV D+V+ R+ L A T LSSKL++ K F K+ V+A
Sbjct: 128 AGWREATKAARQALLNSAVD-HGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA 186
Query: 614 VMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNV 793
V+ L L+ I + K GG+L +S L G K QPK+ N I + N
Sbjct: 187 VLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN----QPKRIENAKILIANT 242
Query: 794 ELEL-KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQ 970
++ K + + +RV + I AE + +K+ERI G +++ I + Q
Sbjct: 243 GMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQ 302
Query: 971 YFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFF 1150
F + ++R + GG I ++ + LG C++ EE IG ++ F
Sbjct: 303 LFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHF 362
Query: 1151 TGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLR 1330
+G + CTI+LRG +Q ++E ERSLHDA+ ++ + +K+ V GGG EM ++ +
Sbjct: 363 SGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVT 422
Query: 1331 DYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINN 1510
+ PGK+ + + +YAKAL ++P + DNAG+D+ +++ +LRA H++G T G+D+
Sbjct: 423 QLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGNTTAGLDMKE 482
Query: 1511 EDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTV 1648
I D + E V+ L +A+EAA +I+ VD IK PR V
Sbjct: 483 GTIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRV 529
>ref|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta-like [Sus scrofa].
Length = 539
Score = 291 bits (745), Expect = 9e-79
Identities = 174/510 (34%), Positives = 289/510 (56%), Gaps = 13/510 (2%)
Frame = +2
Query: 137 SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIA 316
SNISA + +A+A+RT+LGP+GMDK+I DG+G TI+NDGATILK + V+HPAA+ LV+++
Sbjct: 36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELS 95
Query: 317 KSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTV 496
K+QD E GDGTTSV ++A L +++G+HP II +F Q A+ K EI +
Sbjct: 96 KAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESF----QKALEKGIEILTDM 151
Query: 497 KKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDD-----LLQLKMIGIK 661
+ ++ R L A T+L+SK++SQ + + M V+AVM + D + L+ I I
Sbjct: 152 SRPVELSDRDTLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIV 211
Query: 662 KVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELEL-KAEKDNAEIRV 838
K GG +++ +LV G+ + + +G + I L+ L K + DN +I V
Sbjct: 212 KKLGGTIDDCELVEGLVLTQKVANSGI----TRVEKAKIGLIQFCLSAPKTDMDN-QIVV 266
Query: 839 HTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPI-----GDVATQYFADRDMFCAG 1003
++ E + + +++I +G V+L + I D+A + +
Sbjct: 267 SDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVK 326
Query: 1004 RVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGE-RYNFFTGCPK-AKTC 1177
+ ED++ G ++ ++D+LG ++ EE + G + TGC KT
Sbjct: 327 DIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKMLKITGCASPGKTV 386
Query: 1178 TIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGK 1357
TI++RG + +EE ERS+HDA+ ++R +K +++AGGGA E+EL+ L +YSRT+ G
Sbjct: 387 TIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGM 446
Query: 1358 QQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEA 1537
+ + A+A A+E+IP L +NAG + + + +LR RHAQG G+++ I++ E
Sbjct: 447 ESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEE 506
Query: 1538 FVWEPAMVRINALTAASEAACLIVSVDETI 1627
V +P +V ++ALT A+E I+ +D+ +
Sbjct: 507 MVVQPLLVSVSALTLATETVRSILKIDDVV 536
>ref|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma isoform 2 [Sus scrofa].
Length = 545
Score = 288 bits (736), Expect = 1e-77
Identities = 170/534 (31%), Positives = 282/534 (52%), Gaps = 10/534 (1%)
Frame = +2
Query: 80 PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGAT 259
PV++L + T G NI+A + IA+ +RT LGP+ M K+++D G ++NDG
Sbjct: 6 PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNA 65
Query: 260 ILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRA 439
IL+ + V HPAAK++++I+++QD EVGDGTTSV +LA E L + ++E+ +HP ++I A
Sbjct: 66 ILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISA 125
Query: 440 FRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVM 619
+R A ++ +K+I+ V R ++ +++++K+IS+ + + +DAV
Sbjct: 126 YRKALDDMISTLKKISTPV----DTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVK 181
Query: 620 MLD-------DLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMI 778
+ ++ K ++K+ GG +E+S ++ GV K ++ K NP I
Sbjct: 182 TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIK---NPRI 238
Query: 779 ALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGD 958
LL+ LE K + +I + ED+ I+ E + E I H VV+++ I D
Sbjct: 239 VLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISD 298
Query: 959 VATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGR-CQVFEETQIGGE 1135
+A Y ++ RV + D R ACG I + L + +G + E +IG E
Sbjct: 299 LAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDE 358
Query: 1136 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 1315
+ F T C K CTI+LRG +++ + E ER+L DA+ + R + + +V GGGA EM +
Sbjct: 359 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 418
Query: 1316 SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG--TW 1489
+ L + S+ + G +Q A A+ALE+IPR L N G +L LRA+H Q TW
Sbjct: 419 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 478
Query: 1490 YGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
GV+ + D E +WEP V++ A E A L++ +D+ + + D
Sbjct: 479 -GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGD 531
>ref|XP_003355175.1| PREDICTED: t-complex protein 1 subunit gamma isoform 3 [Sus scrofa].
Length = 500
Score = 259 bits (661), Expect = 5e-69
Identities = 155/494 (31%), Positives = 260/494 (52%), Gaps = 10/494 (2%)
Frame = +2
Query: 200 MDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEF 379
M K+++D G ++NDG IL+ + V HPAAK++++I+++QD EVGDGTTSV +LA E
Sbjct: 1 MMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEM 60
Query: 380 LKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALS 559
L + ++E+ +HP ++I A+R A ++ +K+I+ V + R ++ ++++
Sbjct: 61 LSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVDTNN----RDMMLNIINSSIT 116
Query: 560 SKLISQQKAFFAKMVVDAVMMLD-------DLLQLKMIGIKKVQGGALEESQLVAGVAFK 718
+K+IS+ + + +DAV + ++ K ++K+ GG +E+S ++ GV
Sbjct: 117 TKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMIN 176
Query: 719 KTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDK 898
K ++ K NP I LL+ LE K + +I + ED+ I+ E +
Sbjct: 177 KDVTHPRMRRYIK---NPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQL 233
Query: 899 LERIYHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNAL 1078
E I H VV+++ I D+A Y ++ RV + D R ACG I + L
Sbjct: 234 CEDIIHLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEEL 293
Query: 1079 SSDVLGR-CQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIV 1255
+ +G + E +IG E + F T C K CTI+LRG +++ + E ER+L DA+ +
Sbjct: 294 REEDIGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVC 353
Query: 1256 RRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFD 1435
R + + +V GGGA EM ++ L + S+ + G +Q A A+ALE+IPR L N G
Sbjct: 354 RNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGAS 413
Query: 1436 ATNILNKLRARHAQGG--TWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIV 1609
+L LRA+H Q TW GV+ + D E +WEP V++ A E A L++
Sbjct: 414 TIRLLTSLRAKHTQENCETW-GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLL 472
Query: 1610 SVDETIKNPRSTVD 1651
+D+ + + D
Sbjct: 473 RIDDIVSGHKKKGD 486
>ref|XP_001926412.3| PREDICTED: t-complex protein 1 subunit gamma isoform 1 [Sus scrofa].
Length = 507
Score = 242 bits (618), Expect = 5e-64
Identities = 146/470 (31%), Positives = 245/470 (52%), Gaps = 10/470 (2%)
Frame = +2
Query: 272 LDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTA 451
+ V HPAAK++++I+++QD EVGDGTTSV +LA E L + ++E+ +HP ++I A+R A
Sbjct: 32 IQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKA 91
Query: 452 TQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLD- 628
++ +K+I+ V + R ++ +++++K+IS+ + + +DAV +
Sbjct: 92 LDDMISTLKKISTPVDTNN----RDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQF 147
Query: 629 ------DLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLN 790
++ K ++K+ GG +E+S ++ GV K ++ K NP I LL+
Sbjct: 148 EENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIK---NPRIVLLD 204
Query: 791 VELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQ 970
LE K + +I + ED+ I+ E + E I H VV+++ I D+A
Sbjct: 205 SSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQH 264
Query: 971 YFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGR-CQVFEETQIGGERYNF 1147
Y ++ RV + D R ACG I + L + +G + E +IG E + F
Sbjct: 265 YLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFTF 324
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
T C K CTI+LRG +++ + E ER+L DA+ + R + + +V GGGA EM ++ L
Sbjct: 325 ITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHAL 384
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG--TWYGVD 1501
+ S+ + G +Q A A+ALE+IPR L N G +L LRA+H Q TW GV+
Sbjct: 385 TEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW-GVN 443
Query: 1502 INNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
+ D E +WEP V++ A E A L++ +D+ + + D
Sbjct: 444 GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGD 493
>ref|XP_003124509.2| PREDICTED: t-complex protein 1 subunit zeta-like isoform 1 [Sus
scrofa].
Length = 531
Score = 237 bits (604), Expect = 2e-62
Identities = 146/518 (28%), Positives = 267/518 (51%), Gaps = 12/518 (2%)
Frame = +2
Query: 131 LVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVD 310
L NISA + + + +RT LGP+G K++V G G ++ DG +L + + HP A +
Sbjct: 20 LAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAK 79
Query: 311 IAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAV 490
+A +QD GDGTTS L+ E LKQ Y+ EGLHP+II F A + A+ ++++ V
Sbjct: 80 VATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKV 139
Query: 491 TVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML---DDLLQLKMIGIK 661
+ K R+ L A T+L +K+ ++ + VVD+V+ + D+ + L M+ I
Sbjct: 140 S-----KEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSVLAIKKQDEPIDLFMVEIM 194
Query: 662 KVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVH 841
+++ + ++ L+ G+ + + K+ + I NV LE + + N+
Sbjct: 195 EMKHKSETDTSLIRGLVLDHGARHPDMK---KRVEDAYILTCNVSLEYEKTEVNSGFFYK 251
Query: 842 TVEDYQAIVDAEWNILYDKLERIYHSGAKV---------VLSKLPIGDVATQYFADRDMF 994
+ E+ + +V AE + D++++I KV V+++ I + A +
Sbjct: 252 SAEEREKLVRAERKFIEDRVKKIVELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIV 311
Query: 995 CAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKT 1174
R +++R +ACGG S++ L+ D LG + E +G E++ F C ++
Sbjct: 312 ALRRAKRRNMERLTLACGGVALNSLDDLNPDCLGHAGLVYEYTLGEEKFTFIEKCNNPRS 371
Query: 1175 CTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPG 1354
T++++G + + + + ++ D + V+ AI + VV G GA+E+ +++ L Y ++ G
Sbjct: 372 VTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALIKYKPSVKG 431
Query: 1355 KQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFE 1534
+ QL + A+A AL IIP+ L N+GFD L K++A H++ G GVD+N + E
Sbjct: 432 RAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGEPMVAAE 491
Query: 1535 AFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTV 1648
+W+ V+ L + + A I+ VDE ++ S++
Sbjct: 492 VGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSL 529
>ref|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsilon, partial [Sus scrofa].
Length = 487
Score = 224 bits (571), Expect = 1e-58
Identities = 140/505 (27%), Positives = 257/505 (50%), Gaps = 7/505 (1%)
Frame = +2
Query: 137 SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIA 316
S+I A + +A ++T+LGP G+DK++VD G T++NDGATIL ++DV H AK +V+++
Sbjct: 1 SHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELS 60
Query: 317 KSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTV 496
KSQD E+GDGTT V +LA L++ + ++ G+HP I + A ++A+ +
Sbjct: 61 KSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLD------ 114
Query: 497 KKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL----LQLKMIGIKK 664
T L SK+++ A++ V+AV+ + D+ + ++I ++
Sbjct: 115 ---------------XXTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEG 159
Query: 665 VQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHT 844
GG LE+++L+ GV K FS+ PK+ + IA+L E K ++ V +
Sbjct: 160 KVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTS 216
Query: 845 VEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 1024
VEDY+A+ E + + +I +GA + + + D A ++ V ++
Sbjct: 217 VEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEI 276
Query: 1025 KRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIG--GERYNFFTGCPKAKTCTIILRGG 1198
+ +A GG I + L+ + LG + +E G ++ C ++ TI +RGG
Sbjct: 277 ELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGG 336
Query: 1199 AEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGA 1378
+ +EE +RSLHDA+ ++R I+++ VV GGGA E+ + + + + +
Sbjct: 337 NKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKVKRGDRXXXXX 396
Query: 1379 YAKALEIIPRQLCDNAGFDATNILNKLRARHA-QGGTWYGVDINNEDIADNFEAFVWEPA 1555
ALE+IP L +N+G + + ++RAR + G+D ++ D + V E
Sbjct: 397 XXXALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETL 456
Query: 1556 MVRINALTAASEAACLIVSVDETIK 1630
+ + ++ A++ +I+ +D+ K
Sbjct: 457 IGKKQQISLATQMVRMILKIDDIRK 481
>ref|XP_003354567.1| PREDICTED: t-complex protein 1 subunit zeta-like isoform 2 [Sus
scrofa].
Length = 494
Score = 216 bits (549), Expect = 5e-56
Identities = 142/522 (27%), Positives = 253/522 (48%), Gaps = 16/522 (3%)
Frame = +2
Query: 131 LVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVD 310
L NISA + + + +RT LGP+G K++V G G ++ DG +L + + HP A +
Sbjct: 20 LAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAK 79
Query: 311 IAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAV 490
+A +QD GDGTTS L+ E LKQ Y+ EGLHP+II F A + A+ ++++ V
Sbjct: 80 VATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKV 139
Query: 491 TVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML---DDLLQLKMIGIK 661
+ K R+ L A T+L +K+ ++ + VVD+V+ + D+ + L M+ I
Sbjct: 140 S-----KEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSVLAIKKQDEPIDLFMVEI- 193
Query: 662 KVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIR-- 835
+E++ K+E D E+
Sbjct: 194 -------------------------------------------MEMKHKSETDTREVNSG 210
Query: 836 --VHTVEDYQAIVDAEWNILYDKLERIYHSGAKV---------VLSKLPIGDVATQYFAD 982
+ E+ + +V AE + D++++I KV V+++ I + A
Sbjct: 211 FFYKSAEEREKLVRAERKFIEDRVKKIVELKKKVCGDSDKGFVVINQKGIDPFSLDALAK 270
Query: 983 RDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCP 1162
+ R +++R +ACGG S++ L+ D LG + E +G E++ F C
Sbjct: 271 EGIVALRRAKRRNMERLTLACGGVALNSLDDLNPDCLGHAGLVYEYTLGEEKFTFIEKCN 330
Query: 1163 KAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSR 1342
++ T++++G + + + + ++ D + V+ AI + VV G GA+E+ +++ L Y
Sbjct: 331 NPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALIKYKP 390
Query: 1343 TIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIA 1522
++ G+ QL + A+A AL IIP+ L N+GFD L K++A H++ G GVD+N +
Sbjct: 391 SVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGEPM 450
Query: 1523 DNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTV 1648
E +W+ V+ L + + A I+ VDE ++ S++
Sbjct: 451 VAAEVGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSL 492
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,705,739
Number of extensions: 1474618
Number of successful extensions: 4400
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 4358
Number of HSP's successfully gapped: 21
Length of query: 635
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 530
Effective length of database: 8,729,747
Effective search space: 4626765910
Effective search space used: 4626765910
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012468
(1907 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus]. 1000 0.0
Alignment gi|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus]. 295 1e-79
Alignment gi|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus]. 291 1e-78
Alignment gi|NP_001229994.1| T-complex protein 1 subunit gamma [Mus muscu... 290 4e-78
Alignment gi|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus]. 290 4e-78
Alignment gi|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus]. 288 1e-77
Alignment gi|NP_031663.1| T-complex protein 1 subunit epsilon [Mus muscul... 254 1e-67
Alignment gi|NP_033968.1| T-complex protein 1 subunit zeta [Mus musculus]. 236 4e-62
Alignment gi|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculu... 235 8e-62
Alignment gi|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus]. 204 1e-52
>ref|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus].
Length = 544
Score = 1000 bits (2586), Expect = 0.0
Identities = 512/528 (96%), Positives = 520/528 (98%)
Frame = +2
Query: 68 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 247
MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN
Sbjct: 1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 60
Query: 248 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 427
DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI
Sbjct: 61 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 120
Query: 428 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 607
IIRAFRTATQLAVNKIKEIAVTVKK+DKVEQRK+LEKCAMTALSSKLISQQK FFAKMVV
Sbjct: 121 IIRAFRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVV 180
Query: 608 DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 787
DAVMMLD+LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKY NP IALL
Sbjct: 181 DAVMMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIALL 240
Query: 788 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVAT 967
NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLE+I+ SGAKV+LSKLPIGDVAT
Sbjct: 241 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHQSGAKVILSKLPIGDVAT 300
Query: 968 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF 1147
QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNAL DVLG CQVFEETQIGGERYNF
Sbjct: 301 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALVPDVLGHCQVFEETQIGGERYNF 360
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL
Sbjct: 361 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN 1507
RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG WYGVDIN
Sbjct: 421 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDIN 480
Query: 1508 NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
NE+IADNF+AFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD
Sbjct: 481 NENIADNFQAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 528
>ref|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus].
Length = 539
Score = 295 bits (754), Expect = 1e-79
Identities = 176/510 (34%), Positives = 290/510 (56%), Gaps = 13/510 (2%)
Frame = +2
Query: 137 SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIA 316
SNISA + +A+A+RT+LGP+GMDK+I DG+G TI+NDGATILK + V+HPAA+ LV+++
Sbjct: 36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELS 95
Query: 317 KSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTV 496
K+QD E GDGTTSV ++A L +++G+HP II +F Q A+ K EI +
Sbjct: 96 KAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESF----QKALEKGLEILTDM 151
Query: 497 KKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDD-----LLQLKMIGIK 661
+ ++ R+ L A T+L+SK++SQ + + M V+AVM + D + L+ I I
Sbjct: 152 SRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIV 211
Query: 662 KVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELEL-KAEKDNAEIRV 838
K GG +++ +LV G+ + + +G + I L+ L K + DN +I V
Sbjct: 212 KKLGGTIDDCELVEGLVLTQKVANSGI----TRVEKAKIGLIQFCLSAPKTDMDN-QIVV 266
Query: 839 HTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPI-----GDVATQYFADRDMFCAG 1003
++ E + + +++I +G V+L + I D+A + +
Sbjct: 267 SDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVK 326
Query: 1004 RVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF-FTGCPK-AKTC 1177
V ED++ G ++ ++D+LG ++ EE + G F TGC KT
Sbjct: 327 DVEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVSLNGSGKLFKITGCTSPGKTV 386
Query: 1178 TIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGK 1357
TI++RG + +EE ERS+HDA+ ++R +K +++AGGGA E+EL+ L +YSRT+ G
Sbjct: 387 TIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGM 446
Query: 1358 QQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEA 1537
+ + A+A A+E+IP L +NAG + + + +LR RHAQG G+++ I++ E
Sbjct: 447 ESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEE 506
Query: 1538 FVWEPAMVRINALTAASEAACLIVSVDETI 1627
V +P +V ++ALT A+E I+ +D+ +
Sbjct: 507 MVVQPLLVSVSALTLATETVRSILKIDDVV 536
>ref|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus].
Length = 556
Score = 291 bits (745), Expect = 1e-78
Identities = 189/537 (35%), Positives = 288/537 (53%), Gaps = 22/537 (4%)
Frame = +2
Query: 107 DSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVH 286
D S G N+ A IA V+++ GP G+DK++VD G TI+NDGATILKLL+V H
Sbjct: 10 DRSTGEAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 69
Query: 287 PAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAV 466
PAAK L ++A QD EVGDGTTSV ++AAE LK V++ +HP +I +R A + AV
Sbjct: 70 PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 129
Query: 467 NKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML------- 625
I E + E R L A T++SSK+I +FA MVVDAV+ +
Sbjct: 130 RYINENLIINTDE---LGRDCLINAAKTSMSSKIIGINGDYFANMVVDAVLAVKYTDARG 186
Query: 626 DDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELEL 805
+ + I K G + ES L+ G A G + PK+ N IA L+ L+
Sbjct: 187 QPRYPVNSVNILKAHGRSQIESMLINGYALN---CVVGSQGMPKRIVNAKIACLDFSLQK 243
Query: 806 KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQYFADR 985
K ++ + E I E +I +++++I +GA V+L+ I D+ +YF +
Sbjct: 244 TKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMYLKYFVEA 303
Query: 986 DMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSD------VLGRCQVFEETQIGGERYNF 1147
RV + DLK A G SI +++ L + +LG+ + + +I +
Sbjct: 304 GAMAVRRVLKRDLKHVAKASGASILSTLANLEGEETFEVTMLGQAEEVVQERICDDELIL 363
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
+ +IILRG + +E ERSLHDA+ +V+R ++ SVV GGGA+E LS YL
Sbjct: 364 IKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLELKSVVPGGGAVEAALSIYL 423
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGT------- 1486
+Y+ ++ ++QL I +A++L +IP L NA D+T+++ KLRA H +
Sbjct: 424 ENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNL 483
Query: 1487 -WYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTVD 1651
W G+D+ + DN +A V+EP +V++ +L A+EAA I+ +D+ IK +P S D
Sbjct: 484 KWIGLDLVHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 540
>ref|NP_001229994.1| T-complex protein 1 subunit gamma [Mus musculus].
Length = 545
Score = 290 bits (741), Expect = 4e-78
Identities = 171/534 (32%), Positives = 284/534 (53%), Gaps = 10/534 (1%)
Frame = +2
Query: 80 PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGAT 259
PV++L + T G NI+A + IA+ +RT LGP+ M K+++D G ++NDG
Sbjct: 6 PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNA 65
Query: 260 ILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRA 439
IL+ + V HPAAK++++I+++QD EVGDGTTSV +LA E L + ++E+ +HP ++I A
Sbjct: 66 ILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISA 125
Query: 440 FRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVM 619
+R A ++ +K+I+ V V R+++ +++++K+IS+ + + +DAV
Sbjct: 126 YRMALDDMISTLKKISTPV----DVNNREMMLSIINSSITTKVISRWSSLACNIALDAVK 181
Query: 620 MLD-------DLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMI 778
+ ++ K ++K+ GG +E+S ++ GV K ++ K NP I
Sbjct: 182 TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIK---NPRI 238
Query: 779 ALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGD 958
LL+ LE K + +I + ED+ I+ E ++ E I VV+++ I D
Sbjct: 239 VLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISD 298
Query: 959 VATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGR-CQVFEETQIGGE 1135
+A Y ++ RV + D R ACG I + L D +G + E +IG E
Sbjct: 299 LAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDE 358
Query: 1136 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 1315
+ F T C K CTI+LRG +++ + E ER+L DA+ + R + + +V GGGA EM +
Sbjct: 359 YFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 418
Query: 1316 SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG--TW 1489
+ L + S+ + G +Q A A+ALE+IPR L N G +L LRA+H Q TW
Sbjct: 419 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCETW 478
Query: 1490 YGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
GV+ + D E +WEP V++ A E A L++ +D+ + + D
Sbjct: 479 -GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGD 531
>ref|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus].
Length = 545
Score = 290 bits (741), Expect = 4e-78
Identities = 171/534 (32%), Positives = 284/534 (53%), Gaps = 10/534 (1%)
Frame = +2
Query: 80 PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGAT 259
PV++L + T G NI+A + IA+ +RT LGP+ M K+++D G ++NDG
Sbjct: 6 PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNA 65
Query: 260 ILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRA 439
IL+ + V HPAAK++++I+++QD EVGDGTTSV +LA E L + ++E+ +HP ++I A
Sbjct: 66 ILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISA 125
Query: 440 FRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVM 619
+R A ++ +K+I+ V V R+++ +++++K+IS+ + + +DAV
Sbjct: 126 YRMALDDMISTLKKISTPV----DVNNREMMLSIINSSITTKVISRWSSLACNIALDAVK 181
Query: 620 MLD-------DLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMI 778
+ ++ K ++K+ GG +E+S ++ GV K ++ K NP I
Sbjct: 182 TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIK---NPRI 238
Query: 779 ALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGD 958
LL+ LE K + +I + ED+ I+ E ++ E I VV+++ I D
Sbjct: 239 VLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISD 298
Query: 959 VATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGR-CQVFEETQIGGE 1135
+A Y ++ RV + D R ACG I + L D +G + E +IG E
Sbjct: 299 LAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDE 358
Query: 1136 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 1315
+ F T C K CTI+LRG +++ + E ER+L DA+ + R + + +V GGGA EM +
Sbjct: 359 YFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 418
Query: 1316 SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG--TW 1489
+ L + S+ + G +Q A A+ALE+IPR L N G +L LRA+H Q TW
Sbjct: 419 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCETW 478
Query: 1490 YGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
GV+ + D E +WEP V++ A E A L++ +D+ + + D
Sbjct: 479 -GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGD 531
>ref|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus].
Length = 535
Score = 288 bits (736), Expect = 1e-77
Identities = 181/527 (34%), Positives = 286/527 (54%), Gaps = 4/527 (0%)
Frame = +2
Query: 80 PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVD-GRGKAT-ISNDG 253
PV + K G D + +S+ I + V++TLGP+GMDK+++ GR A ++NDG
Sbjct: 8 PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAALMVTNDG 67
Query: 254 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 433
ATILK + V +PAAK LVD+++ QD EVGDGTTSVT+LAAE L++ + + + +HPQ II
Sbjct: 68 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTII 127
Query: 434 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 613
+R AT+ A + AV D+ + L A T LSSKL++ K F K+ V+A
Sbjct: 128 SGWREATKAAREALLSSAVD-HGSDEARFWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA 186
Query: 614 VMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNV 793
V+ L L+ I + K GG+L +S L G K QPK+ N I + N
Sbjct: 187 VLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN----QPKRIENAKILIANT 242
Query: 794 ELEL-KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQ 970
++ K + + +RV + I AE + +K+ERI G +++ I + Q
Sbjct: 243 GMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQ 302
Query: 971 YFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFF 1150
F + ++R + GG I ++ + LG C++ EE IG ++ F
Sbjct: 303 LFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHF 362
Query: 1151 TGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLR 1330
+G + CTI+LRG +Q ++E ERSLHDA+ ++ + +K+ V GGG EM ++ +
Sbjct: 363 SGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVT 422
Query: 1331 DYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINN 1510
+ PGK+ + + ++AKAL ++P + DNAG+D+ +++ +LRA H++G G+D+
Sbjct: 423 QLANRTPGKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGHITAGLDMKE 482
Query: 1511 EDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTV 1648
I D + E V+ L +A+EAA +I+ VD IK PR V
Sbjct: 483 GTIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRV 529
>ref|NP_031663.1| T-complex protein 1 subunit epsilon [Mus musculus].
Length = 541
Score = 254 bits (650), Expect = 1e-67
Identities = 159/526 (30%), Positives = 283/526 (53%), Gaps = 9/526 (1%)
Frame = +2
Query: 80 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 253
P +++K+ S+ G+ L S+I A + +A +RT+LGP G+DK++VD G TI+NDG
Sbjct: 15 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITNDG 74
Query: 254 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 433
ATIL ++DV H AK +V+++KSQD E+GDGTT V +LA L++ + ++ G+HP I
Sbjct: 75 ATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIA 134
Query: 434 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 613
+ A ++A+ + +I+ V + + + L + A T L SK+I+ A++ V+A
Sbjct: 135 DGYEQAARIAIQHLDKISDKVLVD--INNPEPLIQTAKTTLGSKVINSCHRQMAEIAVNA 192
Query: 614 VMMLDDL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIA 781
V+ + D+ + ++I ++ GG LE+++L+ GV K FS+ PKK + IA
Sbjct: 193 VLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKKVVDAKIA 249
Query: 782 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDV 961
+L E K ++ V +VEDY+A+ E + +++I +GA + + + D
Sbjct: 250 ILTCPFEPPKPKTKHKLDVMSVEDYKALQKYEKEKFEEMIKQIKETGANLAICQWGFDDE 309
Query: 962 ATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIG--GE 1135
A + V +++ +A GG I + L+S+ LG V +E G +
Sbjct: 310 ANHLLLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVVQEISFGTTKD 369
Query: 1136 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 1315
+ C ++ TI +RGG + +EE +RSLHDA+ ++R I+++ VV GGGA E+
Sbjct: 370 KMLVIEKCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISC 429
Query: 1316 SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA-QGGTWY 1492
+ + + P +Q + A+A ALE+IP L +N+G + + ++RAR +
Sbjct: 430 ALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPAL 489
Query: 1493 GVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK 1630
G+D ++ D V E + + ++ A++ +I+ +D+ K
Sbjct: 490 GIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRK 535
>ref|NP_033968.1| T-complex protein 1 subunit zeta [Mus musculus].
Length = 531
Score = 236 bits (603), Expect = 4e-62
Identities = 147/518 (28%), Positives = 266/518 (51%), Gaps = 12/518 (2%)
Frame = +2
Query: 131 LVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVD 310
L NISA + + + +RT LGP+G K++V G G ++ DG +L + + HP A +
Sbjct: 20 LAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAK 79
Query: 311 IAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAV 490
+A +QD GDGTTS L+ E LKQ Y+ EGLHP+II F A + A+ ++++ V
Sbjct: 80 VATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKV 139
Query: 491 TVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML---DDLLQLKMIGIK 661
+ K R+ L A T+L +K+ ++ + VVD+++ + D+ + L M+ I
Sbjct: 140 S-----KEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIRKKDEPIDLFMVEIM 194
Query: 662 KVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVH 841
+++ + ++ L+ G+ + + K+ N I NV LE + + N+
Sbjct: 195 EMKHKSETDTSLIRGLVLDHGARHPDMK---KRVENAYILTCNVSLEYEKTEVNSGFFYK 251
Query: 842 TVEDYQAIVDAEWNILYDKLERIYHSGAKV---------VLSKLPIGDVATQYFADRDMF 994
+ E+ + +V AE + D++++I KV V+++ I + A +
Sbjct: 252 SAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIV 311
Query: 995 CAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKT 1174
R +++R +ACGG S + L+ D LG + E +G E++ F C ++
Sbjct: 312 ALRRAKRRNMERLTLACGGIALNSFDDLNPDCLGHAGLVYEYTLGEEKFTFIEKCNNPRS 371
Query: 1175 CTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPG 1354
T++++G + + + + ++ D + V+ AI + VV G GA+E+ L++ L Y ++ G
Sbjct: 372 VTLLVKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVALAEALIKYKPSVKG 431
Query: 1355 KQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFE 1534
+ QL + A+A AL IIP+ L N+GFD L K++A H++ G GVD++ + E
Sbjct: 432 RAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLSTGEPMVAAE 491
Query: 1535 AFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTV 1648
VW+ V+ L + + A I+ VDE ++ S++
Sbjct: 492 MGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSL 529
>ref|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculus].
Length = 531
Score = 235 bits (600), Expect = 8e-62
Identities = 151/528 (28%), Positives = 270/528 (51%), Gaps = 12/528 (2%)
Frame = +2
Query: 101 GTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDV 280
G + ++ L NI A + + + +R TLGP+G K++V G G ++ DG +L + +
Sbjct: 10 GAEVTRSQAALAVNICAARGLQDVLRPTLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQI 69
Query: 281 VHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQL 460
HP A + +A +QD GDGTTS L+ E LKQ Y+ EGLHP+II F A
Sbjct: 70 QHPTASIIAKVAAAQDHVTGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFDVAKTK 129
Query: 461 AVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL-- 634
A+ + EI V K +R++L A T+L +K+ ++ + VVD+V+ +
Sbjct: 130 ALEVLDEIKV-----QKEMKREILLDVARTSLQTKVHAELADILTEAVVDSVLAIRRPGV 184
Query: 635 -LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKA 811
+ L M+ I +++ + ++QL+ G+ A K+ + I NV LE +
Sbjct: 185 PIDLFMVEIVEMRHKSETDTQLIRGLVLDHG---ARHPRMRKQVRDAYILTCNVSLEYEK 241
Query: 812 EKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKV---------VLSKLPIGDVA 964
+ ++ TVE+ + +V AE + D++++I KV V+++ I V+
Sbjct: 242 TEVSSGFFYKTVEEKEKLVKAERKFIEDRVQKIIDLKQKVCAESNKGFVVINQKGIDPVS 301
Query: 965 TQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYN 1144
+ A ++ R +L+R +ACGG S LS + LG + E +G E++
Sbjct: 302 LEMLAKHNIVALRRAKRRNLERLTLACGGLAVNSFEGLSEECLGHAGLVFEYALGEEKFT 361
Query: 1145 FFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKY 1324
F C + T++++G + + + + +L D + V+ AI++ VV G GA+E+ +++
Sbjct: 362 FIEDCVNPLSVTLLVKGPNKHTLIQIKDALRDGLRAVKNAIEDGCVVPGAGAVEVAIAEA 421
Query: 1325 LRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDI 1504
L +Y + G+ +L I A+A AL IIP+ L N+G+D L K++ +HA+ G+D+
Sbjct: 422 LVNYKHRVQGRVRLGIQAFADALLIIPKVLAQNSGYDLQETLIKIQTKHAESKELLGIDL 481
Query: 1505 NNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTV 1648
N + EA +W+ V+ + L + + A I+ VDE ++ S++
Sbjct: 482 NTGEPMAAAEAGIWDNYCVKKHLLHSCTVIATNILLVDEIMRAGMSSL 529
>ref|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus].
Length = 548
Score = 204 bits (520), Expect = 1e-52
Identities = 142/522 (27%), Positives = 251/522 (48%), Gaps = 9/522 (1%)
Frame = +2
Query: 89 LLKEGTDSSQGIPQLV-SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATIL 265
+LK+G G+ + V NI AC+ +A+ RT GP GM+K++++ K ++ND ATIL
Sbjct: 14 MLKDGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINRLEKLFVTNDAATIL 73
Query: 266 KLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFR 445
+ L+V HPAAK +V + Q+ EVGDGT V + A L+ + + GL +I +
Sbjct: 74 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVISGYE 133
Query: 446 TATQLAVNKIKEIAVTVKKE--DKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVM 619
A + A + E+ K D E LL T++ SK + F AK++ A +
Sbjct: 134 IACKKAHEILPELVCCSAKNLRDVDEVSSLLR----TSIMSKQYGSE-TFLAKLIAQACV 188
Query: 620 ML---DDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLN 790
+ + I + K+ G + S ++ G+ FKK E + IA+ +
Sbjct: 189 SIFPDSGNFNVDNIRVCKILGSGIYSSSVLHGMVFKKET-----EGDVTSVKDAKIAVYS 243
Query: 791 VELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQ 970
+ + + + T E+ E N++ +++ I +GA V+++ + D+A
Sbjct: 244 CPFDGMITETKGTVLIKTAEELMNFSKGEENLMDAQVKAIAGTGANVIVTGGKVADIALH 303
Query: 971 YFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFF 1150
Y ++ + DL+R G + + + +G C +++G + F
Sbjct: 304 YANKYNIMLVRLNSKWDLRRLCKTVGATALPKLTPPVQEEMGHCDSVYLSEVGDTQVVVF 363
Query: 1151 TGCPK-AKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
+ TI+LRG + M++ ER++ D + + ++ +V GGGA E+EL+K +
Sbjct: 364 KHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQI 423
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN 1507
Y T PG +Q I +A+A E IPR L +N+G A +++KL + H +G G+DI
Sbjct: 424 TSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYSVHQEGNKNVGLDIE 483
Query: 1508 NE--DIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETI 1627
E + D EA + + + + A+ A+ AA ++ VD+ I
Sbjct: 484 AEVPAVKDMLEASILDTYLGKYWAIKLATNAAVTVLRVDQII 525
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 63,033,001
Number of extensions: 1769065
Number of successful extensions: 5786
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 5747
Number of HSP's successfully gapped: 16
Length of query: 635
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 527
Effective length of database: 12,373,671
Effective search space: 6520924617
Effective search space used: 6520924617
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012468
(1907 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo... 1018 0.0
Alignment gi|NP_001159757.1| T-complex protein 1 subunit eta isoform d [H... 933 0.0
Alignment gi|NP_001159756.1| T-complex protein 1 subunit eta isoform c [H... 849 0.0
Alignment gi|NP_001009570.1| T-complex protein 1 subunit eta isoform b [H... 634 0.0
Alignment gi|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Ho... 302 8e-82
Alignment gi|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Hom... 296 4e-80
Alignment gi|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens]. 293 4e-79
Alignment gi|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Ho... 288 9e-78
Alignment gi|NP_001185771.1| T-complex protein 1 subunit beta isoform 2 [... 273 4e-73
Alignment gi|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapie... 256 7e-68
>ref|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo sapiens].
Length = 543
Score = 1018 bits (2631), Expect = 0.0
Identities = 521/528 (98%), Positives = 525/528 (99%)
Frame = +2
Query: 68 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 247
MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN
Sbjct: 1 MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISN 60
Query: 248 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 427
DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI
Sbjct: 61 DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 120
Query: 428 IIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 607
IIRAFRTATQLAVNKIKEIAVTVKK DKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV
Sbjct: 121 IIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVV 180
Query: 608 DAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 787
DAVMMLDDLLQLKMIGIKKVQGGALE+SQLVAGVAFKKTFSYAGFEMQPKKYHNP IALL
Sbjct: 181 DAVMMLDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALL 240
Query: 788 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVAT 967
NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLE+I+HSGAKVVLSKLPIGDVAT
Sbjct: 241 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVAT 300
Query: 968 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF 1147
QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALS+DVLGRCQVFEETQIGGERYNF
Sbjct: 301 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNF 360
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
FTGCPKAKTCT ILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL
Sbjct: 361 FTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN 1507
RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN
Sbjct: 421 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN 480
Query: 1508 NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD
Sbjct: 481 NEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 528
>ref|NP_001159757.1| T-complex protein 1 subunit eta isoform d [Homo sapiens].
Length = 499
Score = 933 bits (2412), Expect = 0.0
Identities = 477/484 (98%), Positives = 481/484 (99%)
Frame = +2
Query: 200 MDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEF 379
MDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEF
Sbjct: 1 MDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEF 60
Query: 380 LKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALS 559
LKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKK DKVEQRKLLEKCAMTALS
Sbjct: 61 LKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALS 120
Query: 560 SKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAG 739
SKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALE+SQLVAGVAFKKTFSYAG
Sbjct: 121 SKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAG 180
Query: 740 FEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHS 919
FEMQPKKYHNP IALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLE+I+HS
Sbjct: 181 FEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHS 240
Query: 920 GAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGR 1099
GAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALS+DVLGR
Sbjct: 241 GAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGR 300
Query: 1100 CQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDS 1279
CQVFEETQIGGERYNFFTGCPKAKTCT ILRGGAEQFMEETERSLHDAIMIVRRAIKNDS
Sbjct: 301 CQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDS 360
Query: 1280 VVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKL 1459
VVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKL
Sbjct: 361 VVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKL 420
Query: 1460 RARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 1639
RARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR
Sbjct: 421 RARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 480
Query: 1640 STVD 1651
STVD
Sbjct: 481 STVD 484
>ref|NP_001159756.1| T-complex protein 1 subunit eta isoform c [Homo sapiens].
Length = 456
Score = 849 bits (2193), Expect = 0.0
Identities = 432/439 (98%), Positives = 436/439 (99%)
Frame = +2
Query: 335 VGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKV 514
VGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKK DKV
Sbjct: 3 VGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKV 62
Query: 515 EQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQ 694
EQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALE+SQ
Sbjct: 63 EQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEDSQ 122
Query: 695 LVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDA 874
LVAGVAFKKTFSYAGFEMQPKKYHNP IALLNVELELKAEKDNAEIRVHTVEDYQAIVDA
Sbjct: 123 LVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDA 182
Query: 875 EWNILYDKLERIYHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGS 1054
EWNILYDKLE+I+HSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGS
Sbjct: 183 EWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGS 242
Query: 1055 IQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSL 1234
IQTSVNALS+DVLGRCQVFEETQIGGERYNFFTGCPKAKTCT ILRGGAEQFMEETERSL
Sbjct: 243 IQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETERSL 302
Query: 1235 HDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQL 1414
HDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQL
Sbjct: 303 HDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQL 362
Query: 1415 CDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEA 1594
CDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEA
Sbjct: 363 CDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEA 422
Query: 1595 ACLIVSVDETIKNPRSTVD 1651
ACLIVSVDETIKNPRSTVD
Sbjct: 423 ACLIVSVDETIKNPRSTVD 441
>ref|NP_001009570.1| T-complex protein 1 subunit eta isoform b [Homo sapiens].
Length = 339
Score = 634 bits (1635), Expect = 0.0
Identities = 316/322 (98%), Positives = 320/322 (99%)
Frame = +2
Query: 686 ESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAI 865
+SQLVAGVAFKKTFSYAGFEMQPKKYHNP IALLNVELELKAEKDNAEIRVHTVEDYQAI
Sbjct: 3 DSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAI 62
Query: 866 VDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMAC 1045
VDAEWNILYDKLE+I+HSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMAC
Sbjct: 63 VDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMAC 122
Query: 1046 GGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETE 1225
GGSIQTSVNALS+DVLGRCQVFEETQIGGERYNFFTGCPKAKTCT ILRGGAEQFMEETE
Sbjct: 123 GGSIQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETE 182
Query: 1226 RSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIP 1405
RSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIP
Sbjct: 183 RSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIP 242
Query: 1406 RQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAA 1585
RQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAA
Sbjct: 243 RQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAA 302
Query: 1586 SEAACLIVSVDETIKNPRSTVD 1651
SEAACLIVSVDETIKNPRSTVD
Sbjct: 303 SEAACLIVSVDETIKNPRSTVD 324
>ref|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Homo sapiens].
Length = 556
Score = 302 bits (773), Expect = 8e-82
Identities = 192/537 (35%), Positives = 293/537 (54%), Gaps = 22/537 (4%)
Frame = +2
Query: 107 DSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVH 286
D S G N+ A IA V+++LGP G+DK++VD G TI+NDGATILKLL+V H
Sbjct: 10 DRSTGETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 69
Query: 287 PAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAV 466
PAAK L ++A QD EVGDGTTSV ++AAE LK V++ +HP +I +R A + AV
Sbjct: 70 PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 129
Query: 467 NKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML------- 625
I E + E R L A T++SSK+I FFA MVVDAV+ +
Sbjct: 130 RYINENLIVNTDE---LGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDIRG 186
Query: 626 DDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELEL 805
+ + I K G + ES L++G A G + PK+ N IA L+ L+
Sbjct: 187 QPRYPVNSVNILKAHGRSQMESMLISGYALN---CVVGSQGMPKRIVNAKIACLDFSLQK 243
Query: 806 KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQYFADR 985
K ++ + E I E +I +++++I +GA V+L+ I D+ +YF +
Sbjct: 244 TKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEA 303
Query: 986 DMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSD------VLGRCQVFEETQIGGERYNF 1147
RV + DLKR A G +I +++ L + +LG+ + + +I +
Sbjct: 304 GAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELIL 363
Query: 1148 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 1327
+ +IILRG + +E ERSLHDA+ +V+R +++ SVV GGGA+E LS YL
Sbjct: 364 IKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYL 423
Query: 1328 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGT------- 1486
+Y+ ++ ++QL I +A++L +IP L NA D+T+++ KLRA H +
Sbjct: 424 ENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNL 483
Query: 1487 -WYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTVD 1651
W G+D++N DN +A V+EP +V++ +L A+EAA I+ +D+ IK +P S D
Sbjct: 484 KWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 540
>ref|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Homo sapiens].
Length = 535
Score = 296 bits (758), Expect = 4e-80
Identities = 183/527 (34%), Positives = 289/527 (54%), Gaps = 4/527 (0%)
Frame = +2
Query: 80 PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKAT--ISNDG 253
PV + K G D + +++ I + V++TLGP+GMDK+++ A+ ++NDG
Sbjct: 8 PVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 67
Query: 254 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 433
ATILK + V +PAAK LVD+++ QD EVGDGTTSVT+LAAE L++ + + + +HPQ II
Sbjct: 68 ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTII 127
Query: 434 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 613
+R AT+ A + AV D+V+ R+ L A T LSSKL++ K F K+ V+A
Sbjct: 128 AGWREATKAAREALLSSAVD-HGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA 186
Query: 614 VMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNV 793
V+ L L+ I I K GG+L +S L G K QPK+ N I + N
Sbjct: 187 VLRLKGSGNLEAIHIIKKLGGSLADSYLDEGFLLDKKIGVN----QPKRIENAKILIANT 242
Query: 794 ELEL-KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQ 970
++ K + + +RV + I AE + +K+ERI G +++ I + Q
Sbjct: 243 GMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQ 302
Query: 971 YFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFF 1150
F + ++R + GG I ++ + LG C++ EE IG ++ F
Sbjct: 303 LFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHF 362
Query: 1151 TGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLR 1330
+G + CTI+LRG +Q ++E ERSLHDA+ ++ + +K+ V GGG EM ++ +
Sbjct: 363 SGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVT 422
Query: 1331 DYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINN 1510
+ PGK+ + + +YAKAL ++P + DNAG+D+ +++ +LRA H++G T G+D+
Sbjct: 423 QLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGNTTAGLDMRE 482
Query: 1511 EDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTV 1648
I D + E V+ L +A+EAA +I+ VD IK PR V
Sbjct: 483 GTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRV 529
>ref|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens].
Length = 539
Score = 293 bits (750), Expect = 4e-79
Identities = 175/510 (34%), Positives = 290/510 (56%), Gaps = 13/510 (2%)
Frame = +2
Query: 137 SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIA 316
SNISA + +A+A+RT+LGP+GMDK+I DG+G TI+NDGATILK + V+HPAA+ LV+++
Sbjct: 36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELS 95
Query: 317 KSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTV 496
K+QD E GDGTTSV ++A L +++G+HP II +F Q A+ K EI +
Sbjct: 96 KAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESF----QKALEKGIEILTDM 151
Query: 497 KKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDD-----LLQLKMIGIK 661
+ ++ R+ L A T+L+SK++SQ + + M V+AVM + D + L+ I I
Sbjct: 152 SRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIV 211
Query: 662 KVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELEL-KAEKDNAEIRV 838
K GG +++ +LV G+ + S +G + I L+ L K + DN +I V
Sbjct: 212 KKLGGTIDDCELVEGLVLTQKVSNSGI----TRVEKAKIGLIQFCLSAPKTDMDN-QIVV 266
Query: 839 HTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPI-----GDVATQYFADRDMFCAG 1003
++ E + + +++I +G V+L + I D+A + +
Sbjct: 267 SDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIK 326
Query: 1004 RVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGE-RYNFFTGCPK-AKTC 1177
+ ED++ G ++ ++D+LG ++ EE + G + TGC KT
Sbjct: 327 DIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCASPGKTV 386
Query: 1178 TIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGK 1357
TI++RG + +EE ERS+HDA+ ++R +K +++AGGGA E+EL+ L +YSRT+ G
Sbjct: 387 TIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGM 446
Query: 1358 QQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEA 1537
+ + A+A A+E+IP L +NAG + + + +LR RHAQG G+++ I++ E
Sbjct: 447 ESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTAGINVRKGGISNILEE 506
Query: 1538 FVWEPAMVRINALTAASEAACLIVSVDETI 1627
V +P +V ++ALT A+E I+ +D+ +
Sbjct: 507 LVVQPLLVSVSALTLATETVRSILKIDDVV 536
>ref|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Homo sapiens].
Length = 545
Score = 288 bits (738), Expect = 9e-78
Identities = 171/534 (32%), Positives = 282/534 (52%), Gaps = 10/534 (1%)
Frame = +2
Query: 80 PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGAT 259
PV++L + T G NI+A + IA+ +RT LGP+ M K+++D G ++NDG
Sbjct: 6 PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNA 65
Query: 260 ILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRA 439
IL+ + V HPAAK++++I+++QD EVGDGTTSV +LA E L + ++E+ +HP ++I A
Sbjct: 66 ILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISA 125
Query: 440 FRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVM 619
+R A ++ +K+I++ V D ++ +++++K IS+ + + +DAV
Sbjct: 126 YRKALDDMISTLKKISIPVDISDSDMMLNIIN----SSITTKAISRWSSLACNIALDAVK 181
Query: 620 MLD-------DLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMI 778
M+ ++ K ++K+ GG +E+S ++ GV K ++ K NP I
Sbjct: 182 MVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIK---NPRI 238
Query: 779 ALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGD 958
LL+ LE K + +I + ED+ I+ E + E I VV+++ I D
Sbjct: 239 VLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISD 298
Query: 959 VATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGR-CQVFEETQIGGE 1135
+A Y ++ RV + D R ACG I + L D +G + E +IG E
Sbjct: 299 LAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDE 358
Query: 1136 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 1315
+ F T C K CTI+LRG +++ + E ER+L DA+ + R + + +V GGGA EM +
Sbjct: 359 YFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 418
Query: 1316 SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG--TW 1489
+ L + S+ + G +Q A A+ALE+IPR L N G +L LRA+H Q TW
Sbjct: 419 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 478
Query: 1490 YGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVD 1651
GV+ + D E +WEP V++ A E A L++ +D+ + + D
Sbjct: 479 -GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGD 531
>ref|NP_001185771.1| T-complex protein 1 subunit beta isoform 2 [Homo sapiens].
Length = 488
Score = 273 bits (698), Expect = 4e-73
Identities = 171/487 (35%), Positives = 268/487 (55%), Gaps = 4/487 (0%)
Frame = +2
Query: 200 MDKLIVDGRGKAT--ISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAA 373
MDK+++ A+ ++NDGATILK + V +PAAK LVD+++ QD EVGDGTTSVT+LAA
Sbjct: 1 MDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAA 60
Query: 374 EFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTA 553
E L++ + + + +HPQ II +R AT+ A + AV D+V+ R+ L A T
Sbjct: 61 ELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSAVD-HGSDEVKFRQDLMNIAGTT 119
Query: 554 LSSKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSY 733
LSSKL++ K F K+ V+AV+ L L+ I I K GG+L +S L G K
Sbjct: 120 LSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHIIKKLGGSLADSYLDEGFLLDKKIGV 179
Query: 734 AGFEMQPKKYHNPMIALLNVELEL-KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERI 910
QPK+ N I + N ++ K + + +RV + I AE + +K+ERI
Sbjct: 180 N----QPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERI 235
Query: 911 YHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDV 1090
G +++ I + Q F + ++R + GG I ++ +
Sbjct: 236 LKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVK 295
Query: 1091 LGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIK 1270
LG C++ EE IG ++ F+G + CTI+LRG +Q ++E ERSLHDA+ ++ + +K
Sbjct: 296 LGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVK 355
Query: 1271 NDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNIL 1450
+ V GGG EM ++ + + PGK+ + + +YAKAL ++P + DNAG+D+ +++
Sbjct: 356 DSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLV 415
Query: 1451 NKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK 1630
+LRA H++G T G+D+ I D + E V+ L +A+EAA +I+ VD IK
Sbjct: 416 AQLRAAHSEGNTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIK 475
Query: 1631 -NPRSTV 1648
PR V
Sbjct: 476 AAPRKRV 482
>ref|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapiens].
Length = 541
Score = 256 bits (653), Expect = 7e-68
Identities = 155/526 (29%), Positives = 287/526 (54%), Gaps = 9/526 (1%)
Frame = +2
Query: 80 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 253
P +++K+ S+ G+ L S+I A + +A +RT+LGP G+DK++VD G T++NDG
Sbjct: 15 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDG 74
Query: 254 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 433
ATIL ++DV H AK +V+++KSQD E+GDGTT V +LA L++ + ++ G+HP I
Sbjct: 75 ATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIA 134
Query: 434 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 613
+ A ++A+ + +I+ +V + ++ + L + A T L SK+++ A++ V+A
Sbjct: 135 DGYEQAARVAIEHLDKISDSVLVD--IKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 192
Query: 614 VMMLDDL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIA 781
V+ + D+ + ++I ++ GG LE+++L+ GV K FS+ PKK + IA
Sbjct: 193 VLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKKVEDAKIA 249
Query: 782 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDV 961
+L E K ++ V +VEDY+A+ E + +++I +GA + + + D
Sbjct: 250 ILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDE 309
Query: 962 ATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIG--GE 1135
A ++ V +++ +A GG I + L+++ LG + +E G +
Sbjct: 310 ANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKD 369
Query: 1136 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 1315
+ C ++ TI +RGG + +EE +RSLHDA+ ++R I+++ VV GGGA E+
Sbjct: 370 KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISC 429
Query: 1316 SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA-QGGTWY 1492
+ + + P +Q + A+A ALE+IP L +N+G + + ++RAR +
Sbjct: 430 ALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPAL 489
Query: 1493 GVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK 1630
G+D ++ D + V E + + ++ A++ +I+ +D+ K
Sbjct: 490 GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRK 535
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 74,585,503
Number of extensions: 2122389
Number of successful extensions: 7159
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 7098
Number of HSP's successfully gapped: 23
Length of query: 635
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 526
Effective length of database: 14,704,088
Effective search space: 7734350288
Effective search space used: 7734350288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012468
(1907 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 726 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 726 bits (366), Expect = 0.0
Identities = 366/366 (100%)
Strand = Plus / Minus
Query: 1475 caggggggcacgtggtacggggtggacatcaacaacgaggacattgctgacaacttcgag 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72730886 caggggggcacgtggtacggggtggacatcaacaacgaggacattgctgacaacttcgag 72730827
Query: 1535 gccttcgtgtgggagcccgctatggtgcggatcaacgccctgaccgccgcctctgaggcg 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72730826 gccttcgtgtgggagcccgctatggtgcggatcaacgccctgaccgccgcctctgaggcg 72730767
Query: 1595 gcctgccttatcgtgtccgtggacgaaaccatcaagaacccacgctccacagtggacgct 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72730766 gcctgccttatcgtgtccgtggacgaaaccatcaagaacccacgctccacagtggacgct 72730707
Query: 1655 cccccggctgctggccggggccgaggtcgtggccgccctcattgaggtgcaccccggccc 1714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72730706 cccccggctgctggccggggccgaggtcgtggccgccctcattgaggtgcaccccggccc 72730647
Query: 1715 tcacacgagcgccctgcagcctgcgcttcttactcactctgtcttggtcaaatggaatta 1774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72730646 tcacacgagcgccctgcagcctgcgcttcttactcactctgtcttggtcaaatggaatta 72730587
Query: 1775 caaggaagggctagtatttgaccctctgttctcactgaaggttatttaaataaaacttaa 1834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72730586 caaggaagggctagtatttgaccctctgttctcactgaaggttatttaaataaaacttaa 72730527
Query: 1835 gactta 1840
||||||
Sbjct: 72730526 gactta 72730521
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Minus
Query: 1269 agaatgattcagtggtggctgggggcggtgctatcgagatggagctctccaagtacctac 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72731926 agaatgattcagtggtggctgggggcggtgctatcgagatggagctctccaagtacctac 72731867
Query: 1329 gagattactcaaggaccattccaggaaaacagcagttactgattggggcctatgccaagg 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72731866 gagattactcaaggaccattccaggaaaacagcagttactgattggggcctatgccaagg 72731807
Query: 1389 ccttggaaattattccacggcagctctgtgacaatgctggctttgatgccacaaacatcc 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72731806 ccttggaaattattccacggcagctctgtgacaatgctggctttgatgccacaaacatcc 72731747
Query: 1449 tcaacaaactgcgggctcggcatgcccagg 1478
||||||||||||||||||||||||||||||
Sbjct: 72731746 tcaacaaactgcgggctcggcatgcccagg 72731717
Score = 381 bits (192), Expect = e-102
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 849 aggattatcaggcaattgtcgatgctgagtggaacattctctatgacaagttagagagga 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72734075 aggattatcaggcaattgtcgatgctgagtggaacattctctatgacaagttagagagga 72734016
Query: 909 tctatcactccggagccaaagtcgtcttgtccaaactgcccattggggatgtggccaccc 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72734015 tctatcactccggagccaaagtcgtcttgtccaaactgcccattggggatgtggccaccc 72733956
Query: 969 agtactttgctgacagggacatgttctgtgccggccgagtgcctgaggaggatctgaaga 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72733955 agtactttgctgacagggacatgttctgtgccggccgagtgcctgaggaggatctgaaga 72733896
Query: 1029 ggacgatgatgg 1040
||||||||||||
Sbjct: 72733895 ggacgatgatgg 72733884
Score = 343 bits (173), Expect = 2e-91
Identities = 173/173 (100%)
Strand = Plus / Minus
Query: 514 ggagcagaggaagctgctagagaaatgtgccatgactgctctgagctccaagctgatctc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72737994 ggagcagaggaagctgctagagaaatgtgccatgactgctctgagctccaagctgatctc 72737935
Query: 574 ccagcagaaagccttcttcgctaagatggtagtggatgcagtgatgatgctcgacgattt 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72737934 ccagcagaaagccttcttcgctaagatggtagtggatgcagtgatgatgctcgacgattt 72737875
Query: 634 gctgcagcttaaaatgattggaatcaaaaaggtgcagggcggagccctagagg 686
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72737874 gctgcagcttaaaatgattggaatcaaaaaggtgcagggcggagccctagagg 72737822
Score = 333 bits (168), Expect = 2e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 684 aggagtcccagcttgtagccggtgtcgcatttaagaagactttctcttatgctgggtttg 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72735315 aggagtcccagcttgtagccggtgtcgcatttaagaagactttctcttatgctgggtttg 72735256
Query: 744 aaatgcaacccaaaaagtaccataatccaatgattgcccttttaaacgtcgagctcgagc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72735255 aaatgcaacccaaaaagtaccataatccaatgattgcccttttaaacgtcgagctcgagc 72735196
Query: 804 tgaaagctgagaaggataatgctgaaatcagagtccacactgttgagg 851
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72735195 tgaaagctgagaaggataatgctgaaatcagagtccacactgttgagg 72735148
Score = 309 bits (156), Expect = 3e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 73 gcccacacccgttatcctgttgaaagaggggaccgatagctcccaaggcatcccccagct 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72743915 gcccacacccgttatcctgttgaaagaggggaccgatagctcccaaggcatcccccagct 72743856
Query: 133 tgtaagtaacatcagtgcctgccaggtgattgctgaggctgtcagaaccaccctgggccc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72743855 tgtaagtaacatcagtgcctgccaggtgattgctgaggctgtcagaaccaccctgggccc 72743796
Query: 193 ccgtggcatggacaagctcattgtggatggccgagg 228
||||||||||||||||||||||||||||||||||||
Sbjct: 72743795 ccgtggcatggacaagctcattgtggatggccgagg 72743760
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 1136 aggtacaatttcttcactggctgccccaaggccaagacttgcactatcatcctccgtggt 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72732787 aggtacaatttcttcactggctgccccaaggccaagacttgcactatcatcctccgtggt 72732728
Query: 1196 ggcgccgagcagtttatggaggagacagagcggtccctgcatgatgccatcatgattgtc 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72732727 ggcgccgagcagtttatggaggagacagagcggtccctgcatgatgccatcatgattgtc 72732668
Query: 1256 aggagggccatcaag 1270
|||||||||||||||
Sbjct: 72732667 aggagggccatcaag 72732653
Score = 256 bits (129), Expect = 4e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 333 aggttggtgatggcaccacctcagtgaccctgctggctgcagagtttctgaagcaggtga 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72740262 aggttggtgatggcaccacctcagtgaccctgctggctgcagagtttctgaagcaggtga 72740203
Query: 393 aaccctatgtggaagaaggtttgcacccacagatcatcatccgagctttccgcactgcca 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72740202 aaccctatgtggaagaaggtttgcacccacagatcatcatccgagctttccgcactgcca 72740143
Query: 453 ctcagctgg 461
|||||||||
Sbjct: 72740142 ctcagctgg 72740134
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 226 aggcaaagcaacaatttctaatgatggggccacaattctgaaactccttgacgttgtcca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72742997 aggcaaagcaacaatttctaatgatggggccacaattctgaaactccttgacgttgtcca 72742938
Query: 286 tcctgcagcaaagactttagtggacattgccaaatcccaggatgcagaggt 336
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72742937 tcctgcagcaaagactttagtggacattgccaaatcccaggatgcagaggt 72742887
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 1039 ggcttgcggaggctccatccagaccagtgtgaatgctctgtcgtcagacgtgctgggccg 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72733280 ggcttgcggaggctccatccagaccagtgtgaatgctctgtcgtcagacgtgctgggccg 72733221
Query: 1099 ctgccaagtctttgaagagacccagattggaggcgagaggt 1139
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 72733220 ctgccaagtctttgaagagacccagattggaggcgagaggt 72733180
Score = 145 bits (73), Expect = 1e-31
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 1 gggttgctgggcggcccgggcgcgaagcagggaagaggagtagcgggccactggataagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72749849 gggttgctgggcggcccgggcgcgaagcagggaagaggagtagcgggccactggataagc 72749790
Query: 61 ttacaagatgatg 73
|||||||||||||
Sbjct: 72749789 ttacaagatgatg 72749777
Score = 109 bits (55), Expect = 6e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 460 ggcagttaacaagatcaaagagattgccgtgactgtgaagaaggaagataaagtg 514
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72738631 ggcagttaacaagatcaaagagattgccgtgactgtgaagaaggaagataaagtg 72738577
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,656,974
Number of extensions: 277
Number of successful extensions: 277
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 12
Length of query: 1907
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1885
Effective length of database: 2,808,408,574
Effective search space: 5293850161990
Effective search space used: 5293850161990
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)