Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012469
(2139 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536695.2| PREDICTED: similar to complement component 8, a... 899 0.0
Alignment gi|XP_536694.2| PREDICTED: similar to Complement component C8 b... 281 1e-75
Alignment gi|XP_536494.2| PREDICTED: similar to Complement component C9 p... 249 6e-66
Alignment gi|XP_868028.1| PREDICTED: similar to Complement component C6 p... 238 1e-65
Alignment gi|XP_536488.2| PREDICTED: similar to Complement component C6 p... 238 1e-65
Alignment gi|XP_546339.2| PREDICTED: similar to complement component 7 pr... 216 7e-56
Alignment gi|XP_536489.2| PREDICTED: similar to complement component 6 [C... 128 1e-32
Alignment gi|XP_868034.1| PREDICTED: similar to complement component 7 pr... 82 2e-15
Alignment gi|NP_001184111.1| perforin-1 precursor [Canis lupus familiaris]. 59 1e-08
Alignment gi|XP_536545.2| PREDICTED: similar to sortilin-related receptor... 52 2e-06
>ref|XP_536695.2| PREDICTED: similar to complement component 8, alpha polypeptide
precursor [Canis familiaris].
Length = 589
Score = 899 bits (2324), Expect = 0.0
Identities = 426/574 (74%), Positives = 478/574 (83%)
Frame = +2
Query: 119 MLAVAFFILSLMTCQPGVTIQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKK 298
M A AFFILSLM CQPGVTIQEKVNRRVSRAV S+ TAV CQLSNW+EWT+CFPCQDKK
Sbjct: 1 MFAAAFFILSLMICQPGVTIQEKVNRRVSRAVQSAPITAVPCQLSNWSEWTDCFPCQDKK 60
Query: 299 YRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNG 478
YRYRSLLQP+KFGGTICSG+VWDQASCHSPT CL QAQCGQDFQCKETGRCLKRHLVCNG
Sbjct: 61 YRYRSLLQPDKFGGTICSGDVWDQASCHSPTACLHQAQCGQDFQCKETGRCLKRHLVCNG 120
Query: 479 DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQC 658
D+DCLDGSDEDDCEDVR+ E+DCSQY+PIPGSE A LGYNILTQ+E Q VYD RYYGGQC
Sbjct: 121 DKDCLDGSDEDDCEDVRVAENDCSQYEPIPGSESAALGYNILTQKEAQHVYDPRYYGGQC 180
Query: 659 ETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYHFEALADSKFSSESYDDANDLL 838
ETVYNGEWRE+RYD CERLYYG+DEKYFRKPYNFLKYHFEALAD++FSSE YDDA+DLL
Sbjct: 181 ETVYNGEWREIRYDPTCERLYYGEDEKYFRKPYNFLKYHFEALADTRFSSELYDDAHDLL 240
Query: 839 KKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRESAFLNKLSKYNEKKYSFIRIFTKVQ 1018
KVKN VS GVTVG+ TGS T +VG+S S+ S+ L++L KYN+KKYSF+R+FTKVQ
Sbjct: 241 SKVKNNNFVSTGVTVGVSFTGSSVTVDVGVSSSQNSSSLDELKKYNKKKYSFLRVFTKVQ 300
Query: 1019 TASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKFIDDYGTHYITSGSMGGVYEYILVL 1198
TA FKMRR NI+LDE MLQSLMELPEQYNYGMYAKFI+DYGTHYITSGSMGG+YE+ILVL
Sbjct: 301 TAHFKMRRGNIVLDEGMLQSLMELPEQYNYGMYAKFINDYGTHYITSGSMGGIYEHILVL 360
Query: 1199 NKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSLSGKHCKKLGGGHREDEESNTA 1378
NKE M +TS D+ CFG S GI+YDY + ++I GSL GK C+ +GGG + TA
Sbjct: 361 NKEEMESQRITSRDIEKCFGISVGIEYDYANWMKIGGSLGGKGCENIGGGDSKGHRLTTA 420
Query: 1379 VEDIISRVRXXXXXXXXXLTQNGSIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGP 1558
VEDIIS VR L + S ITYR+WGRSLKYNP VIDFEM+PI+E+LRHT LGP
Sbjct: 421 VEDIISLVRGGSSGWGAGLAEKRSTITYRSWGRSLKYNPVVIDFEMQPIHEVLRHTTLGP 480
Query: 1559 LEAKCQNLRRALDQYLMEFNACRCGPCFNNGEPILVGTSCRCQCPVGCQGLACEQMKSEG 1738
LE K QNL RALDQYLMEFNACRCGPCFNNG+PIL GTSC+CQCP+G +GL+CEQM+ +G
Sbjct: 481 LETKRQNLHRALDQYLMEFNACRCGPCFNNGKPILEGTSCKCQCPLGRKGLSCEQMEQKG 540
Query: 1739 AKADGRXXXXXXXXACRLGTQERKERV*QPCTPK 1840
AKADG ACR GTQER+ P TP+
Sbjct: 541 AKADGHWSCWSSWSACRAGTQERRRECNNP-TPQ 573
>ref|XP_536694.2| PREDICTED: similar to Complement component C8 beta chain precursor
(Complement component 8 beta subunit) [Canis familiaris].
Length = 590
Score = 281 bits (720), Expect = 1e-75
Identities = 157/533 (29%), Positives = 260/533 (48%), Gaps = 2/533 (0%)
Frame = +2
Query: 236 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQC 415
+ C+LS+W+ WT C PCQ K+YR+ SLL+P++F G C+ + + C + C Q +C
Sbjct: 63 IDCELSSWSSWTMCDPCQKKRYRHASLLRPSQFYGEPCNFSDKEVEDCVTSRPCRSQVRC 122
Query: 416 GQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGY 595
+ F C +TGRC+ R L+CNGD DC D SDE +C RI++ + + R G
Sbjct: 123 -EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCR--RIYKKCQHEMEQYWAIGRLASGV 179
Query: 596 NILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYH 775
N+ T V D RYY G C Y R FRKPYN Y
Sbjct: 180 NLFTNSFEGPVLDHRYYAGGCSPHYILNTR-------------------FRKPYNVESYT 220
Query: 776 FEALADSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRESAFL 955
+ KF+ +Y+ +D + + ++ + G F + ++ F+
Sbjct: 221 PQTQGKYKFALTAYESYSDFEHNITKTERSTSSFSFGF-KIPEIFEFGISMASDNGKHFI 279
Query: 956 NKLSKYNEKKYSFIRIFTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKFIDD 1135
+++ +++ K +F+ + ++ A +K++ ++ML LQ + LP +Y+YG Y D
Sbjct: 280 SRIKRFSHTKSTFLHARSDLEVAHYKLKPRSLMLHYEFLQRVKLLPLEYSYGEYRDLFRD 339
Query: 1136 YGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSL 1315
+GTHYIT +GG+YEY L++NKE M ++ + + +C F I + + +
Sbjct: 340 FGTHYITEAVLGGIYEYTLIMNKEAMERADYSLKAIQTCAQNDFKIGAAIK-KIYVNLGV 398
Query: 1316 SGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLTQNG--SIITYRAWGRSLKY 1489
S C+ + + + NT VED++ VR L + + WG +++Y
Sbjct: 399 SVDTCEHILREIGDRNKRNTMVEDLVVLVRGGASEHITTLAYKELPTADLMQEWGDAVQY 458
Query: 1490 NPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACRCGPCFNNGEPILVG 1669
NP +I + +P+YE++ T+ QN++RAL+++ E ++CRC PC NG P+L
Sbjct: 459 NPDIIKIKAEPLYELVTATDFAYSSTVRQNMKRALEEFQKEVSSCRCAPCQGNGVPVLKE 518
Query: 1670 TSCRCQCPVGCQGLACEQMKSEGAKADGRXXXXXXXXACRLGTQERKERV*QP 1828
+ C C CP+G +G ACE + DGR C G + R+ + P
Sbjct: 519 SRCDCICPIGSRGPACEVTYEKNVAIDGRWNCWSNWSPCSGGHKTRQRQCNNP 571
>ref|XP_536494.2| PREDICTED: similar to Complement component C9 precursor [Canis
familiaris].
Length = 589
Score = 249 bits (637), Expect = 6e-66
Identities = 168/558 (30%), Positives = 263/558 (47%), Gaps = 49/558 (8%)
Frame = +2
Query: 218 SSTPTAVSCQLSNWAEWTECFPCQDK------------KYRYRSLLQPNKFGG-----TI 346
+ TP V C++S+W++W+EC PC + ++ RS+ +F G +
Sbjct: 44 NDTPFPVDCRMSSWSQWSECDPCLKQMVKILIFPAGFVQFPSRSIQVFRQFKGQKGVAAL 103
Query: 347 CSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCE-D 523
+ WD +P E + G DF C+ TGRC+K+ L+CNGD DC D SDEDDCE D
Sbjct: 104 GNRGHWDPGDPCAPGE---EDWGGGDFGCR-TGRCIKKRLLCNGDNDCGDFSDEDDCESD 159
Query: 524 VRIFEDDCSQYDPIPGSERATL---GYNILTQEETQSVYDARYYGGQCETVYNGEWRELR 694
R+ C + + SE A + G NIL E + +D YY G C+ V +G
Sbjct: 160 PRL---PCRE-KVVEESELARMAGYGINILGMEPLSTPFDNEYYNGLCDRVRDG------ 209
Query: 695 YDSACERLYYGDDEKYFRKPYNFLKYHFEALADSKFSSESYDDANDLLKKVKNEKSVS-- 868
+ Y+R+P+N +E AD F +E Y++ + KK+ EK+ +
Sbjct: 210 -----------NTLVYYRRPWNVASLVYETKADKNFRTEYYEEQIESFKKIVQEKTSNFK 258
Query: 869 AGVTVGIGPTGSPFTANVGLSG--SRESAFLNKLSKY-----------------NEKKYS 991
A + + + PT + + G S + +N SK+ ++K+
Sbjct: 259 ADIALKLTPTEAIEKCKINPEGEDSPRDSSINAESKFQFTYSKNEIYQLFLTHSSKKEKV 318
Query: 992 FIRIFTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKFIDDYGTHYITSGSMG 1171
F+ + + F MR ++ML L + LP Y G Y F++ YGTHY +SGS+G
Sbjct: 319 FLHVKGVIHLGRFVMRSRDVMLTTTFLDDIKALPSTYEKGEYFAFLETYGTHYSSSGSLG 378
Query: 1172 GVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSLSGKHCKKLGGGH 1351
G YE I VL+K +M + GV DV C G F +D+ ++I+G L+ C K G G
Sbjct: 379 GYYELIYVLDKASMEEKGVELRDVQRCLG--FNLDFSLEAGVEISGKLNKDDCLKRGEGE 436
Query: 1352 REDEESNTAVEDIISRVRXXXXXXXXXL-------TQNGSIITYRAWGRSLKYNPAVIDF 1510
+ S+ ++D+IS +R L + I + W SL P +I+
Sbjct: 437 TVNISSDGIIDDVISLIRGGTQKYAYELKEKLLKGAKTIDITDFTNWATSLNDAPVLINH 496
Query: 1511 EMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACRCGPCFNNGEPILVGTSCRCQC 1690
++ PIY ++ + K QNL A++ Y+ EF+ +C C N G IL+ C C C
Sbjct: 497 KLSPIYNLI-PVQIKDAHLKKQNLESAIEDYINEFSVRKCDQCKNGGTIILLEGECLCSC 555
Query: 1691 PVGCQGLACEQMKSEGAK 1744
P+ G+ACE K + +K
Sbjct: 556 PIEFTGIACETSKRKISK 573
>ref|XP_868028.1| PREDICTED: similar to Complement component C6 precursor isoform 2
[Canis familiaris].
Length = 936
Score = 238 bits (608), Expect(2) = 1e-65
Identities = 146/504 (28%), Positives = 243/504 (48%), Gaps = 8/504 (1%)
Frame = +2
Query: 236 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 412
++C L ++ W++C PC +K+++ RS+L+P++FGG C+ + C C + +
Sbjct: 80 INCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEPLVTFQPCIPSKLCKIEEID 139
Query: 413 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLG 592
C F+C ++GRC+ L CNG+ DC D SDE +C + Q++PIP + G
Sbjct: 140 CKNKFRC-DSGRCIANKLECNGENDCGDNSDERNCGRAKAVCPGKRQWNPIPSVQLMGAG 198
Query: 593 YNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKY 772
++ L E V D + GG C+TV + + +R P N
Sbjct: 199 FHFLAGEPRGEVLDNSFTGGICKTVKSSK-----------------ASNPYRVPANLENV 241
Query: 773 HFEALA-DSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRESA 949
+FE + ++ Y D L K +N++ + G +++ S + SA
Sbjct: 242 NFEVQTKEDDLETDFYKDLISLTKN-ENQQGLFGGEEQSSLYIPIFYSSKKTQSTTHNSA 300
Query: 950 FLNKLSKYNEKKYSFIRIFTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKFI 1129
F + ++K SF RI ++ +F M+ ++ L +V L++L LP +YN+ +Y++
Sbjct: 301 FKQAIQASHKKDSSFTRIHKVIEVLNFTMKTKDLQLSDVFLKALNHLPLEYNFALYSRIF 360
Query: 1130 DDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQIT- 1306
DD+GTHY TSGS+GGVY+ + + E + SG+T ++ +C + ++
Sbjct: 361 DDFGTHYYTSGSLGGVYDLLYQYSAEELRTSGLTEKEIQNCVSTETKKSVLFFSKKEVEH 420
Query: 1307 GSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLT-QNGSII----TYRAW 1471
+ K KK G + E + IS ++ L + GS + + W
Sbjct: 421 RCTTNKMSKKYEGSFLQGAEKS------ISLIQGGRSKYAAALAWEKGSSVPTEKEFSEW 474
Query: 1472 GRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACRCGPCFNNG 1651
S+K NP VIDFE+ PI +++R N+ + NLR+A +Y +F+ C C PC NNG
Sbjct: 475 LESVKENPVVIDFELAPITDLVR--NIPCAVTRRNNLRKAFREYAAKFDPCWCAPCPNNG 532
Query: 1652 EPILVGTSCRCQCPVGCQGLACEQ 1723
P L GT C C C G G CE+
Sbjct: 533 RPTLSGTECLCVCHSGTYGDNCER 556
Score = 32.0 bits (71), Expect(2) = 1e-65
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 1800 RKGRRECNNPAPQNGSASGFGHKVQTQAC 1886
R RECNNPAPQ G G + Q + C
Sbjct: 585 RSRTRECNNPAPQQGGKPCEGEQRQEEDC 613
>ref|XP_536488.2| PREDICTED: similar to Complement component C6 precursor isoform 1
[Canis familiaris].
Length = 936
Score = 238 bits (608), Expect(2) = 1e-65
Identities = 146/504 (28%), Positives = 243/504 (48%), Gaps = 8/504 (1%)
Frame = +2
Query: 236 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 412
++C L ++ W++C PC +K+++ RS+L+P++FGG C+ + C C + +
Sbjct: 80 INCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEPLVTFQPCIPSKLCKIEEID 139
Query: 413 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLG 592
C F+C ++GRC+ L CNG+ DC D SDE +C + Q++PIP + G
Sbjct: 140 CKNKFRC-DSGRCIANKLECNGENDCGDNSDERNCGRAKAVCPGKRQWNPIPSVQLMGAG 198
Query: 593 YNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKY 772
++ L E V D + GG C+TV + + +R P N
Sbjct: 199 FHFLAGEPRGEVLDNSFTGGICKTVKSSK-----------------ASNPYRVPANLENV 241
Query: 773 HFEALA-DSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRESA 949
+FE + ++ Y D L K +N++ + G +++ S + SA
Sbjct: 242 NFEVQTKEDDLETDFYKDLISLTKN-ENQQGLFGGEEQSSLYIPIFYSSKKTQSTTHNSA 300
Query: 950 FLNKLSKYNEKKYSFIRIFTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKFI 1129
F + ++K SF RI ++ +F M+ ++ L +V L++L LP +YN+ +Y++
Sbjct: 301 FKQAIQASHKKDSSFTRIHKVIEVLNFTMKTKDLQLSDVFLKALNHLPLEYNFALYSRIF 360
Query: 1130 DDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQIT- 1306
DD+GTHY TSGS+GGVY+ + + E + SG+T ++ +C + ++
Sbjct: 361 DDFGTHYYTSGSLGGVYDLLYQYSAEELRTSGLTEKEIQNCVSTETKKSVLFFSKKEVEH 420
Query: 1307 GSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLT-QNGSII----TYRAW 1471
+ K KK G + E + IS ++ L + GS + + W
Sbjct: 421 RCTTNKMSKKYEGSFLQGAEKS------ISLIQGGRSKYAAALAWEKGSSVPTEKEFSEW 474
Query: 1472 GRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACRCGPCFNNG 1651
S+K NP VIDFE+ PI +++R N+ + NLR+A +Y +F+ C C PC NNG
Sbjct: 475 LESVKENPVVIDFELAPITDLVR--NIPCAVTRRNNLRKAFREYAAKFDPCWCAPCPNNG 532
Query: 1652 EPILVGTSCRCQCPVGCQGLACEQ 1723
P L GT C C C G G CE+
Sbjct: 533 RPTLSGTECLCVCHSGTYGDNCER 556
Score = 32.0 bits (71), Expect(2) = 1e-65
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 1800 RKGRRECNNPAPQNGSASGFGHKVQTQAC 1886
R RECNNPAPQ G G + Q + C
Sbjct: 585 RSRTRECNNPAPQQGGKPCEGEQRQEEDC 613
>ref|XP_546339.2| PREDICTED: similar to complement component 7 precursor isoform 1
[Canis familiaris].
Length = 863
Score = 216 bits (550), Expect = 7e-56
Identities = 155/551 (28%), Positives = 241/551 (43%), Gaps = 12/551 (2%)
Frame = +2
Query: 212 VLSSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPT 391
+ S + V+CQ +A W+EC C + RS+ ++GG C G+ ++ C
Sbjct: 18 IFSRAASPVNCQWDTYAPWSECNGCTKTQTHRRSVAVYGQYGGHPCVGSAFETQPCEPTR 77
Query: 392 ECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDC-LDGSDEDDCEDVRIFEDDCSQYDPIP 568
C + CG+ F+C +G+C+ + LVCNGD DC D +DED CED C P P
Sbjct: 78 GCPTEEGCGERFRCF-SGQCISKSLVCNGDSDCEEDSADEDKCEDSE-SRPSCDLDQPPP 135
Query: 569 GSERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFR 748
E GYN LT + V + + +GGQC V++ GD ++R
Sbjct: 136 NIELTGNGYNELTGQFKNKVINTKSFGGQCRKVFS-----------------GDGNFFYR 178
Query: 749 KPYNFLKYHFEALADSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGL 928
N L Y F+ ++ F+ E Y+ + +K E + S S F+++
Sbjct: 179 LSGNILSYTFQVKINNDFNYEFYNSSWSYVKHTSAEYTSSR-------KKSSLFSSSSSS 231
Query: 929 SGSRESAFLNKLSKYNE-KKYSFIRIFTKVQTASFKMRRDNIM-LDEVMLQSLMELPEQY 1102
S +R ++ SK +E K + + + V+ A F + L E + L LP Y
Sbjct: 232 SYNR----ISHTSKTHENKNHQLLIVQNTVEVAQFVNNNPEFLHLAEPFWKELSLLPPLY 287
Query: 1103 NYGMYAKFIDDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYD 1282
+Y Y + ID YGTHY+ SGS+GG Y+ + ++ + + G+ S D+ C +F
Sbjct: 288 DYSAYRRLIDQYGTHYLQSGSLGGEYKVVFYVDSRKLKQRGLGSVDMKECAASTF----- 342
Query: 1283 YTDNLQITGSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLTQ------N 1444
N S K CK L + D + + VR L++
Sbjct: 343 ---NFLFYASSENK-CKDLEDVLKSDSGTQGNMVRGDPYVRGGSLDFVAGLSKLQLDNPA 398
Query: 1445 GSIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNAC 1624
G+ Y +W S+ P VI ++ P+YE+++ K L+RAL++YL EF+ C
Sbjct: 399 GNKGRYASWAESVTRLPQVIKQKLTPLYELVKEVPCA--SVKRLYLKRALEEYLDEFDPC 456
Query: 1625 RCGPCFNNGEPILVGTSCRCQCPVGCQGLACEQ---MKSEGAKADGRXXXXXXXXACRLG 1795
C PC N G + GT C+C C G+ACEQ + +E DG C G
Sbjct: 457 HCRPCQNGGIATVEGTQCQCHCKPYTFGVACEQGFLVGNEAGGVDGGWNCWSSWTPCVQG 516
Query: 1796 TQERKERV*QP 1828
+ R P
Sbjct: 517 KKTRHRECNNP 527
>ref|XP_536489.2| PREDICTED: similar to complement component 6 [Canis familiaris].
Length = 2211
Score = 128 bits (322), Expect(2) = 1e-32
Identities = 78/254 (30%), Positives = 117/254 (46%)
Frame = +2
Query: 962 LSKYNEKKYSFIRIFTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKFIDDYG 1141
L N + SF RI ++ +F M+ ++ L +V L++L LP +YN+ +Y++ DD+G
Sbjct: 215 LENVNFEDSSFTRIHKVIEVLNFTMKTKDLQLSDVFLKALNHLPLEYNFALYSRIFDDFG 274
Query: 1142 THYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSLSG 1321
THY TSGS+GGVY+ + + E + SG + + + SL
Sbjct: 275 THYYTSGSLGGVYDLLYQYSAEELRTSG------------------SFLQGAEKSISLIQ 316
Query: 1322 KHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLTQNGSIITYRAWGRSLKYNPAV 1501
K ++ S+ E S W S+K NP V
Sbjct: 317 GGRSKYAAALAWEKGSSVPTEKEFSE-----------------------WLESVKENPVV 353
Query: 1502 IDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACRCGPCFNNGEPILVGTSCR 1681
IDFE+ PI +++R N+ + NLR+A +Y +F+ C C PC NNG P L GT C
Sbjct: 354 IDFELAPITDLVR--NIPCAVTRRNNLRKAFREYAAKFDPCWCAPCPNNGRPTLSGTECL 411
Query: 1682 CQCPVGCQGLACEQ 1723
C C G G CE+
Sbjct: 412 CVCHSGTYGDNCER 425
Score = 32.0 bits (71), Expect(2) = 1e-32
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 1800 RKGRRECNNPAPQNGSASGFGHKVQTQAC 1886
R RECNNPAPQ G G + Q + C
Sbjct: 454 RSRTRECNNPAPQQGGKPCEGEQRQEEDC 482
Score = 101 bits (252), Expect = 3e-21
Identities = 48/145 (33%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Frame = +2
Query: 236 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 412
++C L ++ W++C PC +K+++ RS+L+P++FGG C+ + C C + +
Sbjct: 57 INCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEPLVTFQPCIPSKLCKIEEID 116
Query: 413 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLG 592
C F+C ++GRC+ L CNG+ DC D SDE +C + Q++PIP + G
Sbjct: 117 CKNKFRC-DSGRCIANKLECNGENDCGDNSDERNCGRAKAVCPGKRQWNPIPSVQLMGAG 175
Query: 593 YNILTQEETQSVYDARYYGGQCETV 667
++ L E V D + GG C+TV
Sbjct: 176 FHFLAGEPRGEVLDNSFTGGICKTV 200
>ref|XP_868034.1| PREDICTED: similar to complement component 7 precursor isoform 2
[Canis familiaris].
Length = 143
Score = 82.4 bits (202), Expect = 2e-15
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Frame = +2
Query: 212 VLSSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPT 391
+ S + V+CQ +A W+EC C + RS+ ++GG C G+ ++ C
Sbjct: 18 IFSRAASPVNCQWDTYAPWSECNGCTKTQTHRRSVAVYGQYGGHPCVGSAFETQPCEPTR 77
Query: 392 ECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDC-LDGSDEDDCEDVRIFEDDCSQYDPIP 568
C + CG+ F+C +G+C+ + LVCNGD DC D +DED CED C P P
Sbjct: 78 GCPTEEGCGERFRC-FSGQCISKSLVCNGDSDCEEDSADEDKCEDSE-SRPSCDLDQPPP 135
Query: 569 GSE 577
E
Sbjct: 136 NIE 138
>ref|NP_001184111.1| perforin-1 precursor [Canis lupus familiaris].
Length = 555
Score = 59.3 bits (142), Expect = 1e-08
Identities = 59/277 (21%), Positives = 112/277 (40%), Gaps = 7/277 (2%)
Frame = +2
Query: 881 VGIGPTGSP-FTANVGLSGSRESAFLNKLSKYNEKKYSFIRIFTKVQTASFKMRRDNIML 1057
VG+ + P +V ++GS K ++ +YSF + + SF + L
Sbjct: 131 VGLDVSPKPNINVHVSMAGSHSRVADFAAQKTHQDRYSFSTDVVECRFYSFHLVHSP-PL 189
Query: 1058 DEVMLQSLMELPEQYNYGM---YAKFIDDYGTHYITSGSMGGVYEYILVLNKENMTKSGV 1228
++L +LP +N Y + I +YGTH+I S +GG + L + G+
Sbjct: 190 HPNFQRALSDLPPNFNTSTEADYLRLISNYGTHFIRSMELGGRTLALTALRTCELALEGL 249
Query: 1229 TSDDVTSCFGGSFGIDYDYTDNLQITGSLSGKHCKKLGGGHREDEESNTAVEDIISRVRX 1408
T+D+V+ C ++ + + S K C++ H+ + A ++ S +
Sbjct: 250 TADEVSDC----LTVEAQVSISDHANPSSEFKACEEKKKKHKMTTSFHQAYQERFSEIIG 305
Query: 1409 XXXXXXXXLT--QNGSIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNL 1582
L + AW SL P ++D+ ++P+ H L + + + L
Sbjct: 306 GHHTSMSDLLFGNQAGPEQFSAWMASLLDRPGLVDYTLEPL-----HVLLESQDPRREAL 360
Query: 1583 RRALDQYLMEFNACR-CGPCFNNGEPILVGTSCRCQC 1690
R+A+ +Y+M+ + C G+ C C C
Sbjct: 361 RQAVSKYVMDRARWKNCSRPCPPGQQKSPHNPCHCVC 397
>ref|XP_536545.2| PREDICTED: similar to sortilin-related receptor containing LDLR class
A repeats preproprotein [Canis familiaris].
Length = 2204
Score = 52.4 bits (124), Expect = 2e-06
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 353 GNVWDQASCHSPTECLRQAQCGQDFQCK-ETGRCLKRHLVCNGDRDCLDGSDEDDCEDVR 529
G+ D+A+C +PTE C + FQ + E G C+ C+G+ DC D SDE DC D+
Sbjct: 1341 GDYSDEANCENPTEA---PNCSRYFQFRCENGHCIPNRWKCDGENDCGDWSDEKDCGDLH 1397
Query: 530 IFEDDCSQYDPIPGSERATLGY 595
I P PG Y
Sbjct: 1398 ILP------SPTPGPSTCLPNY 1413
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 87,085,328
Number of extensions: 2483749
Number of successful extensions: 10469
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 10379
Number of HSP's successfully gapped: 16
Length of query: 713
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 603
Effective length of database: 15,207,544
Effective search space: 9170149032
Effective search space used: 9170149032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012469
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012469
(2139 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039750.1| complement component C8 alpha chain [Bos tau... 923 0.0
Alignment gi|NP_001039606.2| complement component 8, beta polypeptide [Bo... 281 1e-75
Alignment gi|NP_001030441.1| complement component C9 precursor [Bos tauru... 266 4e-71
Alignment gi|NP_001039444.1| complement component C6 precursor [Bos tauru... 245 1e-67
Alignment gi|NP_001039431.1| complement component C7 precursor [Bos tauru... 227 8e-62
Alignment gi|NP_001137207.1| perforin-1 [Bos taurus]. 58 3e-08
Alignment gi|XP_002685444.1| PREDICTED: low density lipoprotein receptor ... 52 3e-06
Alignment gi|XP_618582.4| PREDICTED: low density lipoprotein-related prot... 52 3e-06
>ref|NP_001039750.1| complement component C8 alpha chain [Bos taurus].
Length = 589
Score = 923 bits (2386), Expect(2) = 0.0
Identities = 440/570 (77%), Positives = 486/570 (85%)
Frame = +2
Query: 119 MLAVAFFILSLMTCQPGVTIQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKK 298
M A AFF+L LMT QPGVTIQEKVN RVSRAV S TPTAVSCQL NWAEWT+CFPCQDKK
Sbjct: 1 MFAAAFFLLFLMTYQPGVTIQEKVNWRVSRAVQSFTPTAVSCQLDNWAEWTDCFPCQDKK 60
Query: 299 YRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNG 478
YRYRSLLQPNKFGGTICSGNVWDQASCHSPT CL QAQCGQDFQCKETGRCLKRHLVCNG
Sbjct: 61 YRYRSLLQPNKFGGTICSGNVWDQASCHSPTACLSQAQCGQDFQCKETGRCLKRHLVCNG 120
Query: 479 DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQC 658
D+DCLDGSDEDDCEDVRI E+DCSQYDPIPGSE+A LGYNILTQEE Q VYDARYYGGQC
Sbjct: 121 DKDCLDGSDEDDCEDVRILENDCSQYDPIPGSEKAALGYNILTQEEAQHVYDARYYGGQC 180
Query: 659 ETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYHFEALADSKFSSESYDDANDLL 838
ETVYNGEWREL+YD ACERLYYGDD+KYFRKPYNFLKYHFEA AD+K SSE Y+DANDLL
Sbjct: 181 ETVYNGEWRELQYDPACERLYYGDDDKYFRKPYNFLKYHFEAQADTKISSEIYNDANDLL 240
Query: 839 KKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRESAFLNKLSKYNEKKYSFIRIFTKVQ 1018
KVKN+KSVS+G+T+G+G G P T G+S S+++AFL KLSKY+EKKYSF+RIFTKVQ
Sbjct: 241 TKVKNDKSVSSGLTIGVGIRGVPVTVTAGVSMSQDAAFLKKLSKYHEKKYSFMRIFTKVQ 300
Query: 1019 TASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKFIDDYGTHYITSGSMGGVYEYILVL 1198
TA FKMRR+NI+LDE MLQSLMELPE+Y+YGMYAKFI+DYGTHYITSGSMGGVYEYILVL
Sbjct: 301 TAHFKMRRENIVLDEGMLQSLMELPERYHYGMYAKFINDYGTHYITSGSMGGVYEYILVL 360
Query: 1199 NKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSLSGKHCKKLGGGHREDEESNTA 1378
N+E M +GVTS ++ CFG S GI+Y+Y++ +QI GS S CKK G G + E
Sbjct: 361 NREKMETAGVTSAEIQKCFGVSLGIEYEYSEAIQIKGSSSLGPCKKSGDGKLTENEKAMG 420
Query: 1379 VEDIISRVRXXXXXXXXXLTQNGSIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGP 1558
VED ISRVR LTQ+ S++TYR+WGRSLKYNPAVIDFEMKPI+EIL+HTNLG
Sbjct: 421 VEDFISRVRGDSSGWGGSLTQDSSLVTYRSWGRSLKYNPAVIDFEMKPIHEILQHTNLGS 480
Query: 1559 LEAKCQNLRRALDQYLMEFNACRCGPCFNNGEPILVGTSCRCQCPVGCQGLACEQMKSEG 1738
LE K QNLRRALD+YLMEFNACRCGPCFNNGEPIL GTSC+CQCPVG QGLACEQM+SEG
Sbjct: 481 LETKRQNLRRALDKYLMEFNACRCGPCFNNGEPILEGTSCKCQCPVGHQGLACEQMQSEG 540
Query: 1739 AKADGRXXXXXXXXACRLGTQERKERV*QP 1828
A+ADGR ACR GTQER+ P
Sbjct: 541 AQADGRWSCWSSWSACRSGTQERRRECNNP 570
Score = 50.8 bits (120), Expect(2) = 0.0
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +3
Query: 1809 RRECNNPAPQNGSASGFGHKVQTQAC 1886
RRECNNPAPQNG AS GH+VQTQAC
Sbjct: 564 RRECNNPAPQNGGASCPGHRVQTQAC 589
>ref|NP_001039606.2| complement component 8, beta polypeptide [Bos taurus].
Length = 590
Score = 281 bits (720), Expect = 1e-75
Identities = 164/543 (30%), Positives = 265/543 (48%), Gaps = 8/543 (1%)
Frame = +2
Query: 224 TPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLR 403
TP + C+LS+W+ WT C PCQ K+YR+ L++P++F G C+ + + C S C
Sbjct: 59 TPLPIDCELSSWSSWTTCDPCQKKRYRHAYLIRPSQFHGEQCNFSDKEVEDCVSNRPCRS 118
Query: 404 QAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDV-RIFEDDCSQYDPIPGSER 580
Q +C + F C +TGRC+ R L+CNGD DC D SDE +C + + + QY I GS
Sbjct: 119 QVRC-EGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCRKTYKKCQQEMEQYWAI-GSLA 176
Query: 581 ATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYN 760
+ G N+ T V D RYY G C Y R FRKPYN
Sbjct: 177 S--GINLFTNNLEGPVLDHRYYAGLCSPHYILNTR-------------------FRKPYN 215
Query: 761 FLKYHFEALADSKFSSESYDDANDLLKKVK----NEKSVSAGVTV-GIGPTGSPFTANVG 925
+ + F+ Y+ +D V + S S G + GI G +N+G
Sbjct: 216 VENFIPQTRGKYDFTLTEYESYSDFEHNVTGTAISRSSFSLGFKIAGIFELGYSSMSNIG 275
Query: 926 LSGSRESAFLNKLSKYNEKKYSFIRIFTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYN 1105
F++++ +++ K F+ + ++ A +K++ N+ML LQ + +LP +Y+
Sbjct: 276 ------QHFISRIRRFSHTKSKFLHARSDLEVAHYKLKTRNLMLHHEFLQRVKQLPLEYS 329
Query: 1106 YGMYAKFIDDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDY 1285
YG Y D+GTHYIT +GG+YEY L++NKE M + + ++ C F I
Sbjct: 330 YGEYRDLFRDFGTHYITEAVLGGIYEYTLIMNKEAMDRGDYSLKNIHDCAKHDFKIGAAI 389
Query: 1286 TDNLQITGSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLTQNG--SIIT 1459
T ++ + +S C + ++ + ++ V+D++ VR L +
Sbjct: 390 T-SVYLKLGVSEAKCSDILNEIKDRNKKDSMVKDLVVLVRGGASEYVTALAYKELPTADL 448
Query: 1460 YRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACRCGPC 1639
+ WG +++YNP +I ++ P+YE++ T+ QN+++AL+++ E ++C+C PC
Sbjct: 449 MQEWGDAVQYNPDIIKVKVMPLYELVTATDFAYSSTVKQNMKKALEEFQKEVDSCQCAPC 508
Query: 1640 FNNGEPILVGTSCRCQCPVGCQGLACEQMKSEGAKADGRXXXXXXXXACRLGTQERKERV 1819
NG P+L GT C C CP G QG ACE + DG+ C G + R+ +
Sbjct: 509 QGNGVPVLKGTRCECICPAGFQGSACEVTHRKNVPIDGKWNCWSNWSPCSGGHKTRQRQC 568
Query: 1820 *QP 1828
P
Sbjct: 569 TNP 571
>ref|NP_001030441.1| complement component C9 precursor [Bos taurus].
Length = 548
Score = 266 bits (681), Expect = 4e-71
Identities = 168/548 (30%), Positives = 262/548 (47%), Gaps = 46/548 (8%)
Frame = +2
Query: 224 TPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLR 403
TP + C++S+W+EW++C PC + +R RS+ +F G C V D+ C PTE
Sbjct: 35 TPLPIDCRMSSWSEWSKCDPCLKQMFRSRSIEIFGQFNGRKCVDAVGDRQQC-VPTEACE 93
Query: 404 QAQ--CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQYDPIPG-- 571
+ CG DFQC TGRC+K L+CN D DC D SDED+CE DP P
Sbjct: 94 DPEEGCGNDFQCG-TGRCIKNRLLCNEDNDCGDYSDEDNCEQ-----------DPRPPCR 141
Query: 572 ---------SERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYY 724
+ A G NIL + + +D +YY G C+ V++G
Sbjct: 142 NRVVEESELARTAGFGINILGMDPLSTPFDNQYYNGLCDRVWDG---------------- 185
Query: 725 GDDEKYFRKPYNFLKYHFEALADSKFSSESYDDANDLLKKVKNEKSVS--AGVTVGIGP- 895
+ Y+R+P+N ++ AD F +E+++++ +L+ + EK ++ AG++V P
Sbjct: 186 -NTLTYYRRPWNVASLTYDTKADKNFRTENHEESIQILRTIIEEKKLNFNAGLSVKYTPV 244
Query: 896 ------------------TGSPFT----ANVGLSGSRESAFLNKLSKYNEKKYS-FIRIF 1006
T SP A + S++ + LS Y+ K+ F+ +
Sbjct: 245 EAIEKNKCVDLEHSDKGSTSSPSKLAAEAKFRFTYSKDDIY-RLLSSYSAKQEKMFLHVK 303
Query: 1007 TKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKFIDDYGTHYITSGSMGGVYEY 1186
KV F MR ++ML L S+ LP Y G Y F++ YGTHY +SGS+GG+YE
Sbjct: 304 GKVHLGRFVMRSRDVMLQTTFLDSINTLPTTYEKGEYFAFLETYGTHYSSSGSLGGLYEL 363
Query: 1187 ILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSLSGKHCKKLGGGHREDEE 1366
I VL+K++M + + DV C G F +D +++TG+ K C K G G E
Sbjct: 364 IYVLDKKSMEQKDIELRDVQRCLG--FDLDLSLKVGVEVTGNFDSKLCSKKGMGQTETNP 421
Query: 1367 SNTAVEDIISRVRXXXXXXXXXLTQN-------GSIITYRAWGRSLKYNPAVIDFEMKPI 1525
+D+I+ +R L + ++ + W SL + P +I ++ PI
Sbjct: 422 EADLFDDVITFIRGGTRKYATELKEKLLRGARMINVTDFVNWAASLNHAPVLISQKLVPI 481
Query: 1526 YEILRHTNLGPLEAKCQNLRRALDQYLMEFNACRCGPCFNNGEPILVGTSCRCQCPVGCQ 1705
Y+++ + K QNL RA++ Y+ EF+ +C PC N G +L+ C C CP +
Sbjct: 482 YDLI-PVKMKDAHLKKQNLERAIEDYINEFSVRKCQPCQNGGTVVLLDGECVCSCPKEFK 540
Query: 1706 GLACEQMK 1729
G+ACE K
Sbjct: 541 GVACEIKK 548
>ref|NP_001039444.1| complement component C6 precursor [Bos taurus].
Length = 932
Score = 245 bits (625), Expect(2) = 1e-67
Identities = 149/505 (29%), Positives = 251/505 (49%), Gaps = 9/505 (1%)
Frame = +2
Query: 236 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 412
++C+L ++ W++C PC K+++ RS+L+P++FGG C+ + C C + +
Sbjct: 80 INCRLGDYGPWSDCDPCVQKRFKVRSILRPSQFGGQPCTEPLMTFQPCIPSKLCKIEEID 139
Query: 413 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQ-YDPIPGSERATL 589
C F+C ++GRC+ L CNG+ DC D SDE +C + CS+ ++PIPG + +
Sbjct: 140 CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRKKTV---CSRSHNPIPGVQLMGM 195
Query: 590 GYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLK 769
G++ L E V D + GG C TV + +R P N
Sbjct: 196 GFHFLAGEPRGEVLDNSFTGGVCRTVKSSR-----------------ASNPYRVPANLEN 238
Query: 770 YHFEALA-DSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRES 946
+FE + ++ YDD L + K+++++ +G+ +++ S S S
Sbjct: 239 VNFEVQTKEDDLEADFYDDLIPL-EDNKDQEALGSGLATSSFRVPIFYSSKRSQSSSHSS 297
Query: 947 AFLNKLSKYNEKKYSFIRIFTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKF 1126
AF + +K SFIRI ++ +F M+ ++ L +V L++L LP +YN +Y++
Sbjct: 298 AFKQAIQASQKKASSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNSALYSRI 357
Query: 1127 IDDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQIT 1306
DD+GTHY TSGS+GGVY+ + +KE + SG+T ++ +C + + ++
Sbjct: 358 FDDFGTHYFTSGSLGGVYDLLYQFSKEELKNSGLTQEEAKNCIRIETKKRFLFVKKTKVE 417
Query: 1307 -GSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLT-QNGSII----TYRA 1468
+ K +K G + E + IS V+ L + GS + +
Sbjct: 418 HRCTTNKLSEKYEGSFMQGSEKS------ISLVQGGRSAYAAALAWEKGSPVPEERVFSD 471
Query: 1469 WGRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACRCGPCFNN 1648
W S+K NP+VIDF + PI +++R N+ + NLRRA +Y +F+ C+C C N+
Sbjct: 472 WLESVKENPSVIDFALAPITDLVR--NIPCAVTRRNNLRRAFREYAAKFDPCQCARCPNS 529
Query: 1649 GEPILVGTSCRCQCPVGCQGLACEQ 1723
G P+L GT C C C G G CE+
Sbjct: 530 GRPVLSGTECLCVCQSGTYGENCER 554
Score = 32.3 bits (72), Expect(2) = 1e-67
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 1800 RKGRRECNNPAPQNGSASGFGHKVQTQAC 1886
R RECNNPAPQ G G + Q + C
Sbjct: 583 RSRTRECNNPAPQQGGKRCEGERRQEEHC 611
>ref|NP_001039431.1| complement component C7 precursor [Bos taurus].
Length = 843
Score = 227 bits (579), Expect(2) = 8e-62
Identities = 153/522 (29%), Positives = 238/522 (45%), Gaps = 8/522 (1%)
Frame = +2
Query: 212 VLSSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPT 391
V SS + ++CQ ++A W+EC C + R RS+ ++GG C G+ ++ C
Sbjct: 18 VFSSASSPINCQWGSYAPWSECNGCTKTQTRRRSIAVYGQYGGHSCVGSAFETQPCQPTR 77
Query: 392 ECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCL-DGSDEDDCEDVRIFEDDCSQYDPIP 568
C + CG+ F+C +G+C+ + LVCNGD DC DG+DED CED C + P P
Sbjct: 78 GCPTEDGCGERFRCF-SGQCISKSLVCNGDSDCEEDGADEDRCEDAES-RPACDKDKPPP 135
Query: 569 GSERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFR 748
E GYN LT + V + + +GGQC VY+G+ R+ ++R
Sbjct: 136 NIELTGRGYNALTGQFRNQVLNTKSFGGQCRKVYSGDGRD-----------------FYR 178
Query: 749 KPYNFLKYHFEALADSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGL 928
N L Y F+ ++ F++E Y+ +K+ E S S+ G +
Sbjct: 179 LSGNILSYTFQVKINNDFNNEFYNSTWAYVKETSTEHSSSS--------KGRFLFFSSSS 230
Query: 929 SGSRESAFLNKLSKYNEKKYSFIRIFTKVQTASF-KMRRDNIMLDEVMLQSLMELPEQYN 1105
S S+ N L+K +K Y + + V+ A F + + L E + L LP Y+
Sbjct: 231 SSHGYSSNTNILTK--KKSYQLLVLQNTVEVAQFINNNPEFLQLAESFWKELSYLPSLYD 288
Query: 1106 YGMYAKFIDDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDY 1285
Y Y + ID YGTHY+ SGS+GG Y+ I ++ E + K S+D C F
Sbjct: 289 YSAYRRLIDQYGTHYLQSGSLGGEYKVIFHMDSEKVKKFDFHSEDKRKCASSHF------ 342
Query: 1286 TDNLQITGSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLT------QNG 1447
Q + S + C + + E+ + + VR L+ G
Sbjct: 343 ----QFLFTSSKQKCTTMEEVLKSVSENEGNLLRGVPFVRGGHSGFLAGLSYLDLNNPAG 398
Query: 1448 SIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACR 1627
+ Y W S+ P VI ++ P+YE+++ K L+RA+++YL EF+ C
Sbjct: 399 NKRRYSQWAGSVPDLPEVIKQKLTPLYELVKEVPCA--SVKKLYLKRAIEEYLDEFDPCH 456
Query: 1628 CGPCFNNGEPILVGTSCRCQCPVGCQGLACEQMKSEGAKADG 1753
C PC N G + G+ C+C C G+ACEQ G +A G
Sbjct: 457 CRPCHNGGMATVQGSQCQCYCKPKTSGVACEQGVLLGDQAGG 498
Score = 30.4 bits (67), Expect(2) = 8e-62
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Frame = +3
Query: 1791 WAP----RKGR-RECNNPAPQNGSASGFGHKVQTQAC 1886
W P +K R R+CNNP+P G S G +T+ C
Sbjct: 509 WGPCVQGKKTRSRQCNNPSPSAGGKSCIGETSETRQC 545
>ref|NP_001137207.1| perforin-1 [Bos taurus].
Length = 554
Score = 58.2 bits (139), Expect = 3e-08
Identities = 62/298 (20%), Positives = 121/298 (40%), Gaps = 6/298 (2%)
Frame = +2
Query: 818 DDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRESAFLNKLSKYNEKKYSFI 997
D A + ++N+ V G+ V P + V ++GS K ++ Y F
Sbjct: 115 DVAGEAANGIRNDWQV--GLDVSPKPNAN---VRVTVAGSHSEDANFAAQKTHQDNYRFG 169
Query: 998 RIFTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNYGM---YAKFIDDYGTHYITSGSM 1168
+ + SF + + E ++L LP +N Y + I YGTH+I S +
Sbjct: 170 MDLVECRFYSFHLVHTPPVHPEFK-RALKTLPPHFNTSTKPDYHRLISSYGTHFIRSMEL 228
Query: 1169 GGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSLSGKHCKKLGGG 1348
GG + L + G+T+ +V C ++ + + + + + S S K C++
Sbjct: 229 GGRISALTXLRTCELALEGLTASEVEDC----LAVEAEVSISDRASASPSFKACEEKKKN 284
Query: 1349 HREDEESNTAVEDIISRVRXXXXXXXXXLT--QNGSIITYRAWGRSLKYNPAVIDFEMKP 1522
H+ + A + S V L + AW SL+ +P ++D+ ++P
Sbjct: 285 HKVGTSFHQAYRERHSNVDGGHHSTMHDLLFGSQAGPEQFSAWVASLQDSPGLVDYTLEP 344
Query: 1523 IYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACR-CGPCFNNGEPILVGTSCRCQCP 1693
++ ++ + + + LR+A+ +Y+ + R C G+ C+C CP
Sbjct: 345 LHMLVESQ-----DPRREALRQAVSKYVTDRARWRDCNRPCPPGQHKNPKNPCQCMCP 397
>ref|XP_002685444.1| PREDICTED: low density lipoprotein receptor related protein-deleted
in tumor-like, partial [Bos taurus].
Length = 4375
Score = 51.6 bits (122), Expect = 3e-06
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +2
Query: 365 DQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCED 523
D+ C+ LR F C+ TGRC+ + VC+GD DC D SDEDDC++
Sbjct: 1116 DEKGCNGT---LRLCDHKTKFSCRSTGRCISKAWVCDGDIDCEDQSDEDDCDN 1165
>ref|XP_618582.4| PREDICTED: low density lipoprotein-related protein 1B, partial [Bos
taurus].
Length = 1678
Score = 51.6 bits (122), Expect = 3e-06
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +2
Query: 365 DQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCED 523
D+ C+ LR F C+ TGRC+ + VC+GD DC D SDEDDC++
Sbjct: 1116 DEKGCNGT---LRLCDHKTKFSCRSTGRCISKAWVCDGDIDCEDQSDEDDCDN 1165
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 83,660,921
Number of extensions: 2446443
Number of successful extensions: 10387
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 10246
Number of HSP's successfully gapped: 12
Length of query: 713
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 604
Effective length of database: 14,074,782
Effective search space: 8501168328
Effective search space used: 8501168328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012469
(2139 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090919.1| complement component C8 alpha chain [Sus scr... 1118 0.0
Alignment gi|NP_001090920.1| complement component C8B [Sus scrofa]. 283 4e-76
Alignment gi|NP_001090918.1| complement component C6 [Sus scrofa]. 252 1e-69
Alignment gi|NP_001090917.1| complement component C9 [Sus scrofa]. 242 5e-64
Alignment gi|NP_999447.1| complement component C7 precursor [Sus scrofa]. 228 1e-59
Alignment gi|XP_003359813.1| PREDICTED: complement component C6-like [Sus... 102 1e-21
Alignment gi|XP_003126347.2| PREDICTED: prolow-density lipoprotein recept... 49 9e-06
>ref|NP_001090919.1| complement component C8 alpha chain [Sus scrofa].
Length = 589
Score = 1118 bits (2892), Expect = 0.0
Identities = 540/570 (94%), Positives = 541/570 (94%)
Frame = +2
Query: 119 MLAVAFFILSLMTCQPGVTIQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKK 298
MLAVAFFILSLMTCQPGVTI EKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKK
Sbjct: 1 MLAVAFFILSLMTCQPGVTIPEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKK 60
Query: 299 YRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNG 478
YRYRSLLQPNKFGG ICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNG
Sbjct: 61 YRYRSLLQPNKFGGAICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNG 120
Query: 479 DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQC 658
DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQC
Sbjct: 121 DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQC 180
Query: 659 ETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYHFEALADSKFSSESYDDANDLL 838
ETVYNGEWRELRYDSACERLYYGDDEKYFR PYNFLKYHFEALADSKFSSESYDDANDLL
Sbjct: 181 ETVYNGEWRELRYDSACERLYYGDDEKYFRNPYNFLKYHFEALADSKFSSESYDDANDLL 240
Query: 839 KKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRESAFLNKLSKYNEKKYSFIRIFTKVQ 1018
KKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRESAFLNKLS YNEKKYSFIRIFTKVQ
Sbjct: 241 KKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRESAFLNKLSTYNEKKYSFIRIFTKVQ 300
Query: 1019 TASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKFIDDYGTHYITSGSMGGVYEYILVL 1198
TASF MRRDNIMLDEVMLQSLMELPEQYNYGMYAKFIDDYGTHYITSGSMGGVYEYILVL
Sbjct: 301 TASFMMRRDNIMLDEVMLQSLMELPEQYNYGMYAKFIDDYGTHYITSGSMGGVYEYILVL 360
Query: 1199 NKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSLSGKHCKKLGGGHREDEESNTA 1378
NKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSLSGKHCKKLGGGHREDEESN A
Sbjct: 361 NKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSLSGKHCKKLGGGHREDEESNMA 420
Query: 1379 VEDIISRVRXXXXXXXXXLTQNGSIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGP 1558
VEDIISRVR LTQNGSIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGP
Sbjct: 421 VEDIISRVRGGSSGWGGGLTQNGSIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGP 480
Query: 1559 LEAKCQNLRRALDQYLMEFNACRCGPCFNNGEPILVGTSCRCQCPVGCQGLACEQMKSEG 1738
LEAK QNLRRALDQYLMEFNACRCGPCFNNGEPILVGTSCRCQCPVGCQGLACEQMKSEG
Sbjct: 481 LEAKRQNLRRALDQYLMEFNACRCGPCFNNGEPILVGTSCRCQCPVGCQGLACEQMKSEG 540
Query: 1739 AKADGRXXXXXXXXACRLGTQERKERV*QP 1828
AKADGR ACRLGTQER+ P
Sbjct: 541 AKADGRWSCWSSWSACRLGTQERRRECNNP 570
Score = 52.8 bits (125), Expect = 8e-07
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = +3
Query: 1809 RRECNNPAPQNGSASGFGHKVQTQAC 1886
RRECNNPAPQNG AS GHKVQTQAC
Sbjct: 564 RRECNNPAPQNGGASCSGHKVQTQAC 589
>ref|NP_001090920.1| complement component C8B [Sus scrofa].
Length = 611
Score = 283 bits (723), Expect = 4e-76
Identities = 156/529 (29%), Positives = 258/529 (48%), Gaps = 2/529 (0%)
Frame = +2
Query: 176 IQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSG 355
+ E + + + T T + C+LS+W+ WT C PCQ K+YR+ SLL+P++F G C+
Sbjct: 55 VNESLGKSRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCNF 114
Query: 356 NVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIF 535
+ + C S C Q +C + F C +TGRC+ R L+CNGD DC D SDE +C+ RI+
Sbjct: 115 SDKEVEDCVSNRPCRSQVRC-EGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCK--RIY 171
Query: 536 EDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACER 715
+ + D G N+ T V D RYY G C Y R
Sbjct: 172 KKCQQEMDQYWAIGSLASGINLFTNNLEGPVLDHRYYAGACSPHYILNTR---------- 221
Query: 716 LYYGDDEKYFRKPYNFLKYHFEALADSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGP 895
FRKPYN ++ + F+ Y+ +D + V + + G
Sbjct: 222 ---------FRKPYNVENFNPQTQGKYDFALTEYESYSDFEQNVTTAAISKSSFSFGFKI 272
Query: 896 TGSPFTANVGLSGSRESAFLNKLSKYNEKKYSFIRIFTKVQTASFKMRRDNIMLDEVMLQ 1075
+G F + + + F+++ +++ K +F+ + ++ A +K++ N+ML LQ
Sbjct: 273 SGM-FEFGISSTSDKGKRFISRTKRFSHTKSTFLHARSDLEVARYKLKSRNLMLHYEFLQ 331
Query: 1076 SLMELPEQYNYGMYAKFIDDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCF 1255
+ +LP +Y+YG Y D+GTHYIT +GGVYEY L++NKE M ++ + DV +C
Sbjct: 332 RVKQLPLEYSYGEYRDLFRDFGTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACA 391
Query: 1256 GGSFGIDYDYTDNLQITGSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXL 1435
F I + + + + CK + ++ + ++ V D++ VR L
Sbjct: 392 QHGFKIGV-AIEEVYVKLGVPVHKCKDILNEIKDRNKRSSMVNDLVVLVRGGASEHITAL 450
Query: 1436 TQNG--SIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLM 1609
+ + WG +++YNP +I + +P+YE++ + QN++RAL+++
Sbjct: 451 AYKDLPTADLMQEWGDAVQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEK 510
Query: 1610 EFNACRCGPCFNNGEPILVGTSCRCQCPVGCQGLACEQMKSEGAKADGR 1756
E ++C C PC NG P+L + C C CP G QG ACE + DG+
Sbjct: 511 EISSCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRKNVPIDGK 559
>ref|NP_001090918.1| complement component C6 [Sus scrofa].
Length = 935
Score = 252 bits (644), Expect(2) = 1e-69
Identities = 161/511 (31%), Positives = 250/511 (48%), Gaps = 15/511 (2%)
Frame = +2
Query: 236 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 412
++C L ++ W++C PC +K+++ RS+L+PN+FGG C+ + C C + +
Sbjct: 80 INCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 139
Query: 413 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQ-YDPIPGSERATL 589
C F+C ++GRC+ L CNG+ DC D SDE +C + CS+ Y+PIP +
Sbjct: 140 CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIPSVQLMGA 195
Query: 590 GYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLK 769
G++IL E V + GG C+TV + + FR P N
Sbjct: 196 GFHILAGEPRGEVLGNSFTGGICKTVKSSK-----------------ASNPFRVPANLEN 238
Query: 770 YHFEALA-DSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGLSG---- 934
+FE + F ++ Y+D L ++N K A G G S F + S
Sbjct: 239 VNFEVQTKEDDFQTDFYED----LIPLENSKDQQA---TGFGQEKSSFHVPIFYSSKKSQ 291
Query: 935 --SRESAFLNKLSKYNEKKYSFIRIFTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNY 1108
S SAF + ++K SFIRI ++ +F M+ ++ L +V L++L LP +YN
Sbjct: 292 TSSHNSAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNA 351
Query: 1109 GMYAKFIDDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYT 1288
+Y++ DD+GTHY TSGS+GGVY+ + + E + SG+T ++ +C Y
Sbjct: 352 ALYSRIFDDFGTHYFTSGSLGGVYDLLYQFSNEELKNSGLTQEEAKNCIRIETKKRYFIV 411
Query: 1289 DNLQIT-GSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLT-QNGSI--- 1453
++ + + +K G + E + IS V+ L + GS
Sbjct: 412 TKTKVEHRCTTNRMSEKYEGSFLQGSEKS------ISLVKGGRSEYAAALAWEKGSSGPG 465
Query: 1454 -ITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACRC 1630
TY W S+K NPAVIDFE+ PI +++R N+ + NLRRA +Y +F+ C+C
Sbjct: 466 EKTYSDWLESVKENPAVIDFELAPITDLVR--NIPCAVTRRNNLRRAFREYAAKFDPCQC 523
Query: 1631 GPCFNNGEPILVGTSCRCQCPVGCQGLACEQ 1723
PC NNG P+L GT C C C G G CE+
Sbjct: 524 APCPNNGRPVLSGTECLCVCQSGTYGDNCER 554
Score = 30.8 bits (68), Expect(2) = 1e-69
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 1800 RKGRRECNNPAPQNGSASGFGHKVQTQAC 1886
R RECNNPAP+ G G + Q + C
Sbjct: 583 RSRTRECNNPAPRQGGKPCDGERRQEEHC 611
>ref|NP_001090917.1| complement component C9 [Sus scrofa].
Length = 543
Score = 242 bits (618), Expect = 5e-64
Identities = 158/501 (31%), Positives = 242/501 (48%), Gaps = 34/501 (6%)
Frame = +2
Query: 218 SSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC 397
+ TP+ + C++S W EW+ C PC + +R RS+ +F G C V D+ C PTE
Sbjct: 35 NGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQC-VPTEP 93
Query: 398 LRQAQ--CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCE-DVRIFEDDCSQYDPIP 568
+ CG DFQC TGRC+KR L+CNGD DC D SDEDDC+ D R C +
Sbjct: 94 CEDLEEDCGSDFQCG-TGRCIKRRLLCNGDNDCGDFSDEDDCDSDPR---PPCRERVVEE 149
Query: 569 GSERATLGY--NILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKY 742
T GY NIL + + +D YY G C+ V +G + Y
Sbjct: 150 SELARTAGYGINILGMDPLTTPFDNEYYNGLCDRVRDG-----------------NTLTY 192
Query: 743 FRKPYNFLKYHFEALADSKFSSESYDDANDLLKKVKNEK--SVSAGVTVGIGPTGSPF-- 910
+RKP+N +E D F +E ++ +LK + EK + +A +T+ PT +
Sbjct: 193 YRKPWNVAALIYETKVDKNFRTEYHERQIQVLKTIIEEKKSNFNADLTIKFTPTEAIEQL 252
Query: 911 -TANVGLSGSRESAFLNK-----------------LSKYNEKKYSFIRIFTKVQTASFKM 1036
+ NV L+ S +N LS ++K+ F+ + + F M
Sbjct: 253 KSKNVELANEENSNPMNNKAHFRFTYSKTETYKLLLSYSSKKEKIFLHVKGVIHLGRFVM 312
Query: 1037 RRDNIMLDEVMLQSLMELPEQYNYGMYAKFIDDYGTHYITSGSMGGVYEYILVLNKENMT 1216
R+ ++ML + L + LP Y G Y F++ YGTHY +SGS+GG+YE I VL+K MT
Sbjct: 313 RKRDVMLTKTFLDDVKYLPSTYEKGEYFAFLETYGTHYSSSGSLGGLYELIYVLDKATMT 372
Query: 1217 KSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSLSGKHCKKLGGGHREDEESNTAVEDIIS 1396
+ G+ DV C G F +D ++I G + ++C K G G E+ ++ ++D+IS
Sbjct: 373 EKGIELRDVHRCLG--FNLDLSLNFGVEIKGKIDSENCLKRGDGKTENIMNDDFIDDVIS 430
Query: 1397 RVRXXXXXXXXXLTQN-------GSIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLG 1555
+R L + ++ + W SL P +I+ ++ PIY+++ L
Sbjct: 431 FIRGGTRKYATELKEKLLKGAKMINVTDFVNWASSLNDAPVLINQKLSPIYDLI-PVKLN 489
Query: 1556 PLEAKCQNLRRALDQYLMEFN 1618
K QNL RA++ Y+ EFN
Sbjct: 490 DAHLKRQNLERAIEDYINEFN 510
>ref|NP_999447.1| complement component C7 precursor [Sus scrofa].
Length = 843
Score = 228 bits (581), Expect = 1e-59
Identities = 157/551 (28%), Positives = 241/551 (43%), Gaps = 12/551 (2%)
Frame = +2
Query: 212 VLSSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPT 391
V SS + V+CQ ++A W+EC C + R R + ++GG C G+ ++ SC
Sbjct: 18 VFSSASSPVNCQWDSYAPWSECNGCTKTQTRRRPVAVYGQYGGHPCVGSTFETQSCEPTR 77
Query: 392 ECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDC-LDGSDEDDCEDVRIFEDDCSQYDPIP 568
C + CG+ F+C +G+C+ + LVCNGD DC D +DED CED C P P
Sbjct: 78 GCPTEEGCGERFRCF-SGQCISKSLVCNGDSDCEEDSADEDRCEDSE-SRPSCDLSKPPP 135
Query: 569 GSERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFR 748
E GYN LT + V + + +GGQC V++G+ R+ ++R
Sbjct: 136 NIELTGNGYNALTGQFRNRVLNTKSFGGQCRKVFSGDGRD-----------------FYR 178
Query: 749 KPYNFLKYHFEALADSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGL 928
N L Y F+ ++ F+ E Y+ K E + S+ V I
Sbjct: 179 LSGNVLSYTFQVKVNNDFNYEFYNSTWSYAKHTSTEHTSSSKGRVFI----------FSS 228
Query: 929 SGSRESAFLNKLSKYNEKKYSFIRIFTKVQTASF-KMRRDNIMLDEVMLQSLMELPEQYN 1105
S S S + +K Y + + V+ A F + + L E + L LP Y+
Sbjct: 229 SSSSSSYYAKTYEILKKKSYQLLVVQNTVEVAQFINNNPEFLQLAESFWKELSYLPPLYD 288
Query: 1106 YGMYAKFIDDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDY 1285
Y Y + ID YGTHY+ SGS+GG Y+ + ++ E + +S + S+D C +
Sbjct: 289 YSAYRRLIDQYGTHYLQSGSLGGEYKVLFYVDSEKVAESDLGSEDKKKCASSHISFLFK- 347
Query: 1286 TDNLQITGSLSGKH-CKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLT------QN 1444
S KH CK + + + + V + VR L+ +
Sbjct: 348 ----------SSKHKCKAMEEALKSASGTQSNVLRGVPFVRGGRPGFVSGLSYLELDNPD 397
Query: 1445 GSIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNAC 1624
G+ Y +W S+ P VI ++ P+YE+++ K L+RAL++YL EF++C
Sbjct: 398 GNKQRYSSWAGSVTDLPQVIKQKLTPLYELVKEVPCA--SVKRLYLKRALEEYLDEFDSC 455
Query: 1625 RCGPCFNNGEPILVGTSCRCQCPVGCQGLACEQMKSEGAKA---DGRXXXXXXXXACRLG 1795
C PC N G + GT C+C C G+ACEQ G A DG C G
Sbjct: 456 HCQPCQNGGMASVEGTQCQCHCKPNTFGVACEQGVLVGDHAGGIDGGWSCWSSWGPCAQG 515
Query: 1796 TQERKERV*QP 1828
+ R + P
Sbjct: 516 KKTRSRKCNNP 526
>ref|XP_003359813.1| PREDICTED: complement component C6-like [Sus scrofa].
Length = 267
Score = 102 bits (253), Expect = 1e-21
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Frame = +2
Query: 236 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 412
++C L ++ W++C PC +K+++ RS+L PN+FGG C+ + C C + +
Sbjct: 81 INCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 140
Query: 413 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCS-QYDPIPGSERATL 589
C F+C ++GRC+ L CNG+ DC D SDE +C + CS +Y+PIP +
Sbjct: 141 CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIPSVQLMGA 196
Query: 590 GYNILTQEETQSVYDARYYGGQCETV 667
G++IL E V + GG C+TV
Sbjct: 197 GFHILAGEPRGEVLGNSFTGGICKTV 222
>ref|XP_003126347.2| PREDICTED: prolow-density lipoprotein receptor-related protein
1-like [Sus scrofa].
Length = 1598
Score = 49.3 bits (116), Expect = 9e-06
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Frame = +2
Query: 323 PNKFGGTI---CSGNVWDQASCHSPTECL---------RQAQCGQD-FQCKETGRCLKRH 463
PN+F +I C VW C +C+ Q CG D F+CK++GRC+
Sbjct: 509 PNQFQCSITKRCIPRVW---VCDRDNDCVDGSDEPANCTQMTCGVDEFRCKDSGRCIPAR 565
Query: 464 LVCNGDRDCLDGSDE--DDCED--VRIFEDDCSQYDPIPG 571
C+G+ DC DGSDE ++C++ ++ C +PG
Sbjct: 566 WKCDGEDDCGDGSDEPKEECDERTCEPYQFRCKNNRCVPG 605
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 54,113,763
Number of extensions: 1608536
Number of successful extensions: 6436
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6363
Number of HSP's successfully gapped: 10
Length of query: 713
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 607
Effective length of database: 8,704,850
Effective search space: 5283843950
Effective search space used: 5283843950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012469
(2139 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666260.1| complement component C8 alpha chain precursor [... 835 0.0
Alignment gi|NP_598643.1| complement component C8 beta chain precursor [M... 303 4e-82
Alignment gi|NP_038513.1| complement component C9 [Mus musculus]. 276 4e-74
Alignment gi|NP_057913.2| complement component 6 [Mus musculus]. 235 4e-65
Alignment gi|NP_001230766.1| complement component C7 [Mus musculus]. 217 9e-59
Alignment gi|NP_035203.3| perforin-1 precursor [Mus musculus]. 68 3e-11
Alignment gi|NP_034830.2| low-density lipoprotein receptor [Mus musculus]. 52 2e-06
Alignment gi|XP_992216.3| PREDICTED: low-density lipoprotein receptor-rel... 50 5e-06
Alignment gi|XP_003084810.1| PREDICTED: low-density lipoprotein receptor-... 50 7e-06
>ref|NP_666260.1| complement component C8 alpha chain precursor [Mus musculus].
Length = 587
Score = 835 bits (2156), Expect(2) = 0.0
Identities = 401/573 (69%), Positives = 457/573 (79%), Gaps = 3/573 (0%)
Frame = +2
Query: 119 MLAVAFFILSLMTCQPGVTIQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKK 298
M VAFF LSL+ PGVT QEKVN+RV+RAV TP AVSCQLS+W +WT+CFPCQDKK
Sbjct: 1 MFVVAFFGLSLVAWHPGVTAQEKVNQRVTRAV---TPQAVSCQLSDWYKWTDCFPCQDKK 57
Query: 299 YRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNG 478
YRYRSLLQP+KFGGTICSG++WD+ASC SPT CLRQAQCGQDFQC+ETGRCLKRHLVCNG
Sbjct: 58 YRYRSLLQPSKFGGTICSGDIWDEASCDSPTPCLRQAQCGQDFQCRETGRCLKRHLVCNG 117
Query: 479 DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQC 658
D DCLDGSDE DCEDVR+ EDDC QY+PIPGSERA LGYNILTQEE QSVYDA+YYGGQC
Sbjct: 118 DNDCLDGSDESDCEDVRVTEDDCHQYEPIPGSERAALGYNILTQEEAQSVYDAKYYGGQC 177
Query: 659 ETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYHFEALADSKFSSESYDDANDLL 838
ETVYNG+WR+LRYD CERLYYG+DEKYFRKPYNFLKYHFEALAD+ SSE YDDANDL
Sbjct: 178 ETVYNGDWRKLRYDPTCERLYYGEDEKYFRKPYNFLKYHFEALADTSISSEFYDDANDLF 237
Query: 839 KKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRESAFLNKLSKYNEKKYSFIRIFTKVQ 1018
+KN KS SAGVTVG+ P SP + V SGS+ S+FLNKL+KYNEK+Y F+R+ TK+Q
Sbjct: 238 FHIKNGKSHSAGVTVGVAPVKSPVSIEVTGSGSKASSFLNKLNKYNEKRYGFMRVSTKIQ 297
Query: 1019 TASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKFIDDYGTHYITSGSMGGVYEYILVL 1198
TA FKMRR+NI+LDE MLQSLMELPEQ+NYGMYAKFI+DYGTHYITSG+MGG+YEY++VL
Sbjct: 298 TAQFKMRRNNIVLDEGMLQSLMELPEQFNYGMYAKFINDYGTHYITSGTMGGIYEYVMVL 357
Query: 1199 NKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSLSGKHCKKLGGGHREDEESNTA 1378
+KE M G T D+V C GG GI D+ +SG+ C+ G G R+ + T
Sbjct: 358 DKEKMKTEGTTVDEVQKCIGGGIGI--GIKDSTIEGVGISGEFCENSGDGDRDIRKKITG 415
Query: 1379 VEDIISRVRXXXXXXXXXLTQNGSIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGP 1558
VEDIISRV+ LT N S ITY++WGRSLKYNP VIDFEM+PIY++LRHTNLGP
Sbjct: 416 VEDIISRVQGGSSVWGSVLTHNSSAITYQSWGRSLKYNPVVIDFEMQPIYQLLRHTNLGP 475
Query: 1559 LEAKCQNLRRALDQYLMEFNACRCGPCFNNGEPILVGTSCRCQCPVGCQGLACEQMKSEG 1738
LE K QNLRRALDQYLMEFNACRCGPCFNNGEPIL GT+CRCQC +G QGLACE+ EG
Sbjct: 476 LETKRQNLRRALDQYLMEFNACRCGPCFNNGEPILDGTNCRCQCSMGRQGLACERTVIEG 535
Query: 1739 A---KADGRXXXXXXXXACRLGTQERKERV*QP 1828
KA G CR G+QER+ + P
Sbjct: 536 LKDFKAAGHWSCWSSWSECRGGSQERRRQCNNP 568
Score = 39.3 bits (90), Expect(2) = 0.0
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 1809 RRECNNPAPQNGSASGFGHKVQTQAC 1886
RR+CNNP P+NG G +QTQAC
Sbjct: 562 RRQCNNPPPKNGGTPCLGRNLQTQAC 587
>ref|NP_598643.1| complement component C8 beta chain precursor [Mus musculus].
Length = 589
Score = 303 bits (776), Expect = 4e-82
Identities = 172/553 (31%), Positives = 271/553 (49%), Gaps = 2/553 (0%)
Frame = +2
Query: 188 VNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWD 367
V R R+V + P + C+LS W+ WT C PCQ K+YR+ LL+P++F G +C + +
Sbjct: 47 VKSRPVRSV-AEAPAPIDCELSTWSSWTACDPCQKKRYRHTYLLRPSQFYGELCDLSDKE 105
Query: 368 QASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDC 547
C + C Q +C + F C +TGRC+ R L+CNGD DC D SDE +C RI+++
Sbjct: 106 VEDCVTNQPCRSQVRC-EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCR--RIYKNCQ 162
Query: 548 SQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYG 727
+ + +R G N+ T V D RYY G C Y +
Sbjct: 163 REMEQYWAIDRLASGINLFTNTFEGPVLDHRYYAGGCSPHYILDTN-------------- 208
Query: 728 DDEKYFRKPYNFLKYHFEALADSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSP 907
FRKPYN Y + + +F+ Y+ +D + V +K+ T G G
Sbjct: 209 -----FRKPYNVESYTPQTKCEYEFTLTEYESYSDFERLVIEKKTHMFNFTSGFKVDGV- 262
Query: 908 FTANVGLSGSRESAFLNKLSKYNEKKYSFIRIFTKVQTASFKMRRDNIMLDEVMLQSLME 1087
+ + + ++ + ++ + F+ + ++ A +K++ ++ML LQ +
Sbjct: 263 MDLGIKVESNEGKNYVTRTKRFAHTQSKFLHARSVLEVAHYKLKSRSLMLHYEFLQRVKS 322
Query: 1088 LPEQYNYGMYAKFIDDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSF 1267
LP +Y+YG Y + D+GTH+IT +GG+YEY L++NK+ M + T VT+C GGSF
Sbjct: 323 LPLEYSYGEYRDLLRDFGTHFITEAVLGGIYEYTLIMNKDAMEQGDYTLSHVTACAGGSF 382
Query: 1268 GIDYDYTDNLQITGSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLTQNG 1447
GI + + +S K C + E + +T VED++ VR L
Sbjct: 383 GIG-GMVYKVYVKVGVSAKKCSDIMKEINERNKRSTMVEDLVVLVRGGTSEDITALAYKE 441
Query: 1448 --SIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNA 1621
+ AWG ++KYNPA+I + +P+YE++ T+ QNL++AL+++ E ++
Sbjct: 442 LPTPELMEAWGDAVKYNPAIIKIKAEPLYELVTATDFAYSSTVKQNLKKALEEFQSEVSS 501
Query: 1622 CRCGPCFNNGEPILVGTSCRCQCPVGCQGLACEQMKSEGAKADGRXXXXXXXXACRLGTQ 1801
CRC PC NG P+L G+ C C CP G QG ACE + DG+ AC G +
Sbjct: 502 CRCAPCRGNGVPVLKGSRCECICPGGFQGTACEVTYRKDIPIDGKWSCWSDWSACSGGHK 561
Query: 1802 ERKERV*QPCTPK 1840
R + P K
Sbjct: 562 TRHRQCNNPAPHK 574
>ref|NP_038513.1| complement component C9 [Mus musculus].
Length = 561
Score = 276 bits (707), Expect = 4e-74
Identities = 178/566 (31%), Positives = 267/566 (47%), Gaps = 33/566 (5%)
Frame = +2
Query: 122 LAVAFFILSLMTCQPGVTIQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKKY 301
LA+A F L + P +E+ + P + C++S W+ W+EC PC +++
Sbjct: 22 LALAIFALGVNAQMPIPVSREEQEQHY--------PIPIDCRMSPWSNWSECDPCLKQRF 73
Query: 302 RYRSLLQPNKFGGTICSGNVWDQASCHSPTECLR-QAQCGQDFQCKETGRCLKRHLVCNG 478
R RS+L +F G C + D+ C EC Q CG DFQC ETGRC+KR L+CNG
Sbjct: 74 RSRSILAFGQFNGKSCVDVLGDRQGCEPTQECEEIQENCGNDFQC-ETGRCIKRRLLCNG 132
Query: 479 DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGY--NILTQEETQSVYDARYYGG 652
D DC D SDE+DC+D C T GY NIL E ++ +D +Y G
Sbjct: 133 DNDCGDYSDENDCDDDP--RTPCRDRVAEESELGLTAGYGINILGMEPLRTPFDNEFYNG 190
Query: 653 QCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYHFEALADSKFSSESYDDAND 832
C+ V D++ Y+RKP+N + +E AD F +E+YD+ +
Sbjct: 191 LCDRVR-------------------DEKTYYRKPWNVVSLIYETKADKSFRTENYDEHLE 231
Query: 833 LLKKVKNEKS--VSAGVTVGIGPTGSPFTANVGLSGSRESA-------------FLNK-- 961
+ K + EK+ +A + T P +S + S+ F+ K
Sbjct: 232 VFKAINREKTSNFNADFALKFSATEVPEKGAGEVSPAEHSSKPTNISAKFKFSYFMGKNF 291
Query: 962 --LSKY-NEKKYSFIRIFTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKFID 1132
LS Y ++ K F+ + VQ F MR +++L L + LP Y G Y F++
Sbjct: 292 RRLSSYFSQSKKMFVHLRGVVQLGRFVMRNRDVVLRSTFLDDVKALPTSYEKGEYFGFLE 351
Query: 1133 DYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQ---I 1303
YGTHY TSGS+GG YE + VL+K +M + GV +DV C G + + D+L+ +
Sbjct: 352 TYGTHYSTSGSLGGQYEIVYVLDKASMKEKGVDLNDVKHCLGFNMDLRIPLQDDLKDASV 411
Query: 1304 TGSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLTQ-------NGSIITY 1462
T S++ C K G + + ++D+IS +R L + +
Sbjct: 412 TASVNADGCIKTDNGKTVNITRDNIIDDVISFIRGGTREQAILLKEKILRGDKTFDKTDF 471
Query: 1463 RAWGRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACRCGPCF 1642
W SL PA+I M PIY ++ + K QNL +A++ Y+ EF+ RC PC
Sbjct: 472 ANWASSLANAPALISQRMSPIYNLI-PLKIKDAYIKKQNLEKAVEDYIDEFSTKRCYPCL 530
Query: 1643 NNGEPILVGTSCRCQCPVGCQGLACE 1720
N G IL+ C C CP+ +G+ACE
Sbjct: 531 NGGTIILLDGQCLCSCPMMFRGMACE 556
>ref|NP_057913.2| complement component 6 [Mus musculus].
Length = 769
Score = 235 bits (600), Expect(2) = 4e-65
Identities = 150/509 (29%), Positives = 244/509 (47%), Gaps = 4/509 (0%)
Frame = +2
Query: 236 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 412
++C L ++ W++C PC +K+ + +S+L+P++FGG C+ + C C + +
Sbjct: 80 INCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEPLVTFQPCVPSKLCKIEETN 139
Query: 413 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQ-YDPIPGSERATL 589
C F C ++GRC+ L CNG+ DC D SDE +C + C++ Y PIP +
Sbjct: 140 CKNKFLC-DSGRCIPSKLECNGENDCGDNSDERNCGRTKPV---CTRIYTPIPSVQLMGT 195
Query: 590 GYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLK 769
G++ L E V D + GG C+ V +R N
Sbjct: 196 GFHFLAGEPRGEVLDNSFTGGICKLVKTSR-----------------ASNPYRVSANLEN 238
Query: 770 YHFEALA-DSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRES 946
+FE + +E Y + +K KNE S+S P + S
Sbjct: 239 VNFEVQTIEDDLKTEFYKNLISF-EKNKNEDSLSVDERTKFFPIPIFHFSEKNEHSHYSS 297
Query: 947 AFLNKLSKYNEKKYSFIRIFTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKF 1126
AF + ++K SFIRI ++ +F M+ ++ L +V L++L+ LP +YN +Y++
Sbjct: 298 AFNKVIKASHKKDSSFIRIHKLIKVLNFTMKATDLQLSDVFLKALVHLPLEYNSAVYSRI 357
Query: 1127 IDDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFG-GSFGIDYDYTDNLQI 1303
DD+GTHY TSGS+GG Y+ I +++ + SG+T ++ +C + + + Y + +
Sbjct: 358 FDDFGTHYFTSGSLGGKYDLIYQFSRQELQNSGLTEEEAQNCVQYETKKLKFLYMEIHKE 417
Query: 1304 TGSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLTQNGSIITYRAWGRSL 1483
K +K GG + E + ++ R + T Y W S+
Sbjct: 418 DTCTKNKLSEKYGGSFLQGSEKSISLVQ-GGRSQQAAALAWEKGTSGPEENVYSEWLESV 476
Query: 1484 KYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACRCGPCFNNGEPIL 1663
K NPAV+D+++ PI +++R N+ K NLRRAL +Y +F+ C+C PC NNG P L
Sbjct: 477 KENPAVVDYKLAPITDLVR--NIPCAVTKRNNLRRALQEYAAKFDPCQCAPCPNNGRPRL 534
Query: 1664 VGTSCRCQCPVGCQGLACEQMKSEGAKAD 1750
GT C C C G G CE+ +S G K+D
Sbjct: 535 SGTECLCVCQSGTYGENCER-RSPGYKSD 562
Score = 33.1 bits (74), Expect(2) = 4e-65
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +3
Query: 1800 RKGRRECNNPAPQNGSASGFGHKVQTQAC 1886
R RECNNPAPQ G S G Q + C
Sbjct: 583 RSRTRECNNPAPQRGGQSCGGKDQQEEDC 611
>ref|NP_001230766.1| complement component C7 [Mus musculus].
Length = 845
Score = 217 bits (553), Expect(2) = 9e-59
Identities = 147/526 (27%), Positives = 232/526 (44%), Gaps = 12/526 (2%)
Frame = +2
Query: 212 VLSSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPT 391
V S + V+C+ ++ W+EC C + R RS+ ++GG C G+ ++ SC
Sbjct: 18 VFSRASSPVNCKWDSYGPWSECNGCTKTQTRRRSVAVYGQYGGYPCEGSAFETQSCKPER 77
Query: 392 ECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCL-DGSDEDDCEDVRIFEDDCSQYDPIP 568
C + CG F+C +G+C+ + LVCNGD DC DG+DED CE+V C+ P P
Sbjct: 78 GCPTEEGCGDRFRCF-SGQCISKSLVCNGDPDCEEDGADEDKCENVA--NPSCNIDKPPP 134
Query: 569 GSERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFR 748
E GYN++T + + V + + +GGQC V++G D + ++R
Sbjct: 135 NIELTGYGYNVVTGQGKKRVINTKSFGGQCRKVFSG-----------------DGKDFYR 177
Query: 749 KPYNFLKYHFEALADSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGL 928
N L Y F+ D+ F+ E Y+ + +K E++ F + GL
Sbjct: 178 LSGNILSYTFQVKVDNDFNYEFYNSSWSYIKHTSTEQNT--------------FYSWKGL 223
Query: 929 SGSRESAFLNKLSKYN----EKKYSFIRIFTKVQTASFKMRRDNIM-LDEVMLQSLMELP 1093
+ + + +K K Y + + V+ A F + + E + L LP
Sbjct: 224 FSHSRNTYGHGSAKEEIDTKMKSYKLLVVQNTVEVAQFTNNNPEFLQVAEPFWKELSHLP 283
Query: 1094 EQYNYGMYAKFIDDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSF-- 1267
Y+Y Y + ID YGTHY+ SGS+GG Y + ++ + ++G SD +C F
Sbjct: 284 TLYDYSAYRRLIDQYGTHYLQSGSLGGEYRVLFYVDSGSAKETGFQSDQDNACSSADFQF 343
Query: 1268 ----GIDYDYTDNLQITGSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXL 1435
D L+ S SG + L G + V D+
Sbjct: 344 LFTSSADQRCMKQLETEKSTSGNKGRLLRGKPLVRGGDSGFVADL---------SFLDLD 394
Query: 1436 TQNGSIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEF 1615
G+ Y +W S+ P VI ++ P+YE+++ K L+RA+++Y EF
Sbjct: 395 NPAGNKQRYSSWAGSVTRLPQVIKEKLAPLYELVKEVPCA--SVKRLYLKRAIEEYFDEF 452
Query: 1616 NACRCGPCFNNGEPILVGTSCRCQCPVGCQGLACEQMKSEGAKADG 1753
+ C C PC N G I+V T C+C C G ACEQ G +A G
Sbjct: 453 DPCHCRPCQNGGLAIVVETQCQCLCKPYTFGSACEQGVLVGDQAGG 498
Score = 30.0 bits (66), Expect(2) = 9e-59
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +3
Query: 1791 WAP-----RKGRRECNNPAPQNGSASGFGHKVQTQAC 1886
W+P R RECNNP P++ S G +++ C
Sbjct: 509 WSPCVQGKRTRSRECNNPPPRDDGKSCLGETTESKQC 545
>ref|NP_035203.3| perforin-1 precursor [Mus musculus].
Length = 554
Score = 67.8 bits (164), Expect = 3e-11
Identities = 58/262 (22%), Positives = 111/262 (42%), Gaps = 7/262 (2%)
Frame = +2
Query: 926 LSGSRESAFLNKLSKYNEKKYSFIRIFTKVQTASFKM-RRDNIMLDEVMLQSLMELPEQY 1102
++GS K + +Y+F + + SF++ ++ + LD ++L LP +
Sbjct: 146 VAGSHSKVANFAAEKTYQDQYNFNSDTVECRMYSFRLVQKPPLHLD--FKKALRALPRNF 203
Query: 1103 NYGM---YAKFIDDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGI 1273
N Y + I YGTH+IT+ +GG + L +T +G+T+D+V C +
Sbjct: 204 NSSTEHAYHRLISSYGTHFITAVDLGGRISVLTALRTCQLTLNGLTADEVGDC----LNV 259
Query: 1274 DYDYTDNLQITGSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLT--QNG 1447
+ + Q + S K C++ H+ + + V L
Sbjct: 260 EAQVSIGAQASVSSEYKACEEKKKQHKMATSFHQTYRERHVEVLGGPLDSTHDLLFGNQA 319
Query: 1448 SIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACR 1627
+ + W SL NP ++D+ ++P++ +L N K + LR+A+ Y+M +
Sbjct: 320 TPEQFSTWTASLPSNPGLVDYSLEPLHTLLEEQN-----PKREALRQAISHYIMSRARWQ 374
Query: 1628 -CGPCFNNGEPILVGTSCRCQC 1690
C +G+ SC+C+C
Sbjct: 375 NCSRPCRSGQHKSSHDSCQCEC 396
>ref|NP_034830.2| low-density lipoprotein receptor [Mus musculus].
Length = 862
Score = 51.6 bits (122), Expect = 2e-06
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Frame = +2
Query: 320 QPNKF--GGTI--CSGNVW---DQASCHSPTE---CLRQAQCGQDFQCKETGRCLKRHLV 469
Q N+F GG + C + W Q C + ++ C + DF+C++ G+C+ V
Sbjct: 69 QSNQFSCGGRVSRCIPDSWRCDGQVDCENDSDEQGCPPKTCSQDDFRCQD-GKCISPQFV 127
Query: 470 CNGDRDCLDGSDEDDCE 520
C+GDRDCLDGSDE C+
Sbjct: 128 CDGDRDCLDGSDEAHCQ 144
>ref|XP_992216.3| PREDICTED: low-density lipoprotein receptor-related protein 2-like
[Mus musculus].
Length = 1974
Score = 50.4 bits (119), Expect = 5e-06
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +2
Query: 323 PNKFGGTICSGNVW---DQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCL 493
PN G T N + D +C +C +QC CK+ RC+ + +C+G DCL
Sbjct: 1711 PNPEGKTCWCPNGYCLVDGHTCMEAVQCSPMSQC-----CKDGQRCISKEQICDGHVDCL 1765
Query: 494 DGSDEDDC 517
DGSDE DC
Sbjct: 1766 DGSDEVDC 1773
>ref|XP_003084810.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like
[Mus musculus].
Length = 976
Score = 50.1 bits (118), Expect = 7e-06
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +2
Query: 323 PNKFGGTICSGNVW---DQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCL 493
PN G T N + D +C +C +QC CK+ RC+ + +C+G DCL
Sbjct: 713 PNPEGKTCWCPNGYCLVDGHTCVEAVQCSPMSQC-----CKDGQRCISKEQICDGHVDCL 767
Query: 494 DGSDEDDC 517
DGSDE DC
Sbjct: 768 DGSDEVDC 775
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 72,600,336
Number of extensions: 2060399
Number of successful extensions: 8780
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 8647
Number of HSP's successfully gapped: 12
Length of query: 713
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 604
Effective length of database: 12,343,635
Effective search space: 7455555540
Effective search space used: 7455555540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012469
(2139 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000553.1| complement component C8 alpha chain precursor [... 895 0.0
Alignment gi|NP_000057.1| complement component C8 beta chain preproprotei... 295 1e-79
Alignment gi|NP_001108603.2| complement component C6 precursor [Homo sapi... 245 5e-68
Alignment gi|NP_000056.2| complement component C6 precursor [Homo sapiens]. 245 5e-68
Alignment gi|NP_001728.1| complement component C9 precursor [Homo sapiens]. 252 8e-67
Alignment gi|NP_000578.2| complement component C7 precursor [Homo sapiens]. 212 4e-57
Alignment gi|NP_001076585.1| perforin-1 precursor [Homo sapiens]. 69 2e-11
Alignment gi|NP_005032.2| perforin-1 precursor [Homo sapiens]. 69 2e-11
Alignment gi|NP_001182728.1| low-density lipoprotein receptor isoform 3 p... 54 6e-07
Alignment gi|NP_705837.1| transmembrane protease serine 6 [Homo sapiens]. 52 3e-06
>ref|NP_000553.1| complement component C8 alpha chain precursor [Homo sapiens].
Length = 584
Score = 895 bits (2314), Expect(2) = 0.0
Identities = 424/570 (74%), Positives = 474/570 (83%)
Frame = +2
Query: 119 MLAVAFFILSLMTCQPGVTIQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKK 298
M AV FFILSLMTCQPGVT QEKVN+RV RA +TP AV+CQLSNW+EWT+CFPCQDKK
Sbjct: 1 MFAVVFFILSLMTCQPGVTAQEKVNQRVRRA---ATPAAVTCQLSNWSEWTDCFPCQDKK 57
Query: 299 YRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNG 478
YR+RSLLQPNKFGGTICSG++WDQASC S T C+RQAQCGQDFQCKETGRCLKRHLVCNG
Sbjct: 58 YRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNG 117
Query: 479 DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQC 658
D+DCLDGSDEDDCEDVR ++DCSQY+PIPGS++A LGYNILTQE+ QSVYDA YYGGQC
Sbjct: 118 DQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQSVYDASYYGGQC 177
Query: 659 ETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYHFEALADSKFSSESYDDANDLL 838
ETVYNGEWRELRYDS CERLYYGDDEKYFRKPYNFLKYHFEALAD+ SSE YD+ANDLL
Sbjct: 178 ETVYNGEWRELRYDSTCERLYYGDDEKYFRKPYNFLKYHFEALADTGISSEFYDNANDLL 237
Query: 839 KKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRESAFLNKLSKYNEKKYSFIRIFTKVQ 1018
KVK +KS S GVT+GIGP GSP VG+S S++++FLN+L+KYNEKK+ F RIFTKVQ
Sbjct: 238 SKVKKDKSDSFGVTIGIGPAGSPLLVGVGVSHSQDTSFLNELNKYNEKKFIFTRIFTKVQ 297
Query: 1019 TASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKFIDDYGTHYITSGSMGGVYEYILVL 1198
TA FKMR+D+IMLDE MLQSLMELP+QYNYGMYAKFI+DYGTHYITSGSMGG+YEYILV+
Sbjct: 298 TAHFKMRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVI 357
Query: 1199 NKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSLSGKHCKKLGGGHREDEESNTA 1378
+K M G+TS D+T+CFGGS GI Y+ D + + G LSG HCKK GGG E A
Sbjct: 358 DKAKMESLGITSRDITTCFGGSLGIQYE--DKINVGGGLSGDHCKKFGGGKTERARKAMA 415
Query: 1379 VEDIISRVRXXXXXXXXXLTQNGSIITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGP 1558
VEDIISRVR L QN S ITYR+WGRSLKYNP VIDFEM+PI+E+LRHT+LGP
Sbjct: 416 VEDIISRVRGGSSGWSGGLAQNRSTITYRSWGRSLKYNPVVIDFEMQPIHEVLRHTSLGP 475
Query: 1559 LEAKCQNLRRALDQYLMEFNACRCGPCFNNGEPILVGTSCRCQCPVGCQGLACEQMKSEG 1738
LEAK QNLRRALDQYLMEFNACRCGPCFNNG PIL GTSCRCQC +G G ACEQ ++EG
Sbjct: 476 LEAKRQNLRRALDQYLMEFNACRCGPCFNNGVPILEGTSCRCQCRLGSLGAACEQTQTEG 535
Query: 1739 AKADGRXXXXXXXXACRLGTQERKERV*QP 1828
AKADG CR G QER+ P
Sbjct: 536 AKADGSWSCWSSWSVCRAGIQERRRECDNP 565
Score = 47.0 bits (110), Expect(2) = 0.0
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +3
Query: 1809 RRECNNPAPQNGSASGFGHKVQTQAC 1886
RREC+NPAPQNG AS G KVQTQAC
Sbjct: 559 RRECDNPAPQNGGASCPGRKVQTQAC 584
>ref|NP_000057.1| complement component C8 beta chain preproprotein [Homo sapiens].
Length = 591
Score = 295 bits (754), Expect = 1e-79
Identities = 167/529 (31%), Positives = 263/529 (49%), Gaps = 4/529 (0%)
Frame = +2
Query: 236 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQC 415
+ C+LS+W+ WT C PCQ K+YRY LLQP++F G C+ + + C + C Q +C
Sbjct: 63 IDCELSSWSSWTTCDPCQKKRYRYAYLLQPSQFHGEPCNFSDKEVEDCVTNRPCGSQVRC 122
Query: 416 GQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGY 595
+ F C +TGRC+ R L+CNGD DC D SDE +C RI++ + D G G
Sbjct: 123 -EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCR--RIYKKCQHEMDQYWGIGSLASGI 179
Query: 596 NILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYH 775
N+ T V D RYY G C Y R FRKPYN Y
Sbjct: 180 NLFTNSFEGPVLDHRYYAGGCSPHYILNTR-------------------FRKPYNVESYT 220
Query: 776 FEALADSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRESAFL 955
+ +F + Y+ +D + V + + +G + G G F + R ++
Sbjct: 221 PQTQGKYEFILKEYESYSDFERNVTEKMASKSGFSFGFKIPGI-FELGISSQSDRGKHYI 279
Query: 956 NKLSKYNEKKYSFIRIFTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKFIDD 1135
+ +++ K F+ + ++ A +K++ ++ML LQ + LP +Y+YG Y D
Sbjct: 280 RRTKRFSHTKSVFLHARSDLEVAHYKLKPRSLMLHYEFLQRVKRLPLEYSYGEYRDLFRD 339
Query: 1136 YGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSL 1315
+GTHYIT +GG+YEY LV+NKE M + T ++V +C F I + G
Sbjct: 340 FGTHYITEAVLGGIYEYTLVMNKEAMERGDYTLNNVHACAKNDFKIGGAIEEVYVSLGVS 399
Query: 1316 SGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLTQNG--SIITYRAWGRSLKY 1489
GK C+ + ++ + +T VED++ VR L + + WG +++Y
Sbjct: 400 VGK-CRGILNEIKDRNKRDTMVEDLVVLVRGGASEHITTLAYQELPTADLMQEWGDAVQY 458
Query: 1490 NPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACRCGPCFNNGEPILVG 1669
NPA+I +++P+YE++ T+ QN+++AL+++ E ++C C PC NG P+L G
Sbjct: 459 NPAIIKVKVEPLYELVTATDFAYSSTVRQNMKQALEEFQKEVSSCHCAPCQGNGVPVLKG 518
Query: 1670 TSCRCQCPVGCQGLACEQMKSEGAKADGRXXXXXXXXAC--RLGTQERK 1810
+ C C CPVG QGLACE + DG+ +C R T++R+
Sbjct: 519 SRCDCICPVGSQGLACEVSYRKNTPIDGKWNCWSNWSSCSGRRKTRQRQ 567
>ref|NP_001108603.2| complement component C6 precursor [Homo sapiens].
Length = 934
Score = 245 bits (625), Expect(2) = 5e-68
Identities = 162/524 (30%), Positives = 247/524 (47%), Gaps = 24/524 (4%)
Frame = +2
Query: 236 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 412
++C L ++ W++C PC +K+ + RS+L+P++FGG C+ + C C + +A
Sbjct: 80 INCLLGDFGPWSDCDPCIEKQSKVRSVLRPSQFGGQPCTAPLVAFQPCIPSKLCKIEEAD 139
Query: 413 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQ-YDPIPGSERATL 589
C F+C ++GRC+ R L CNG+ DC D SDE DC + C++ Y+PIP +
Sbjct: 140 CKNKFRC-DSGRCIARKLECNGENDCGDNSDERDCGRTKAV---CTRKYNPIPSVQLMGN 195
Query: 590 GYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLK 769
G++ L E V D + GG C+TV + +R P N
Sbjct: 196 GFHFLAGEPRGEVLDNSFTGGICKTVKSSR-----------------TSNPYRVPANLEN 238
Query: 770 YHFEA-LADSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRE- 943
FE A+ ++ Y D L + S S+ GS F+ + S R
Sbjct: 239 VGFEVQTAEDDLKTDFYKDLTSLGHNENQQGSFSS-------QGGSSFSVPIFYSSKRSE 291
Query: 944 -----SAFLNKLSKYNEKKYSFIRIFTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNY 1108
SAF + ++K SFIRI ++ +F + ++ L +V L++L LP +YN
Sbjct: 292 NINHNSAFKQAIQASHKKDSSFIRIHKVMKVLNFTTKAKDLHLSDVFLKALNHLPLEYNS 351
Query: 1109 GMYAKFIDDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSC----------FG 1258
+Y++ DD+GTHY TSGS+GGVY+ + + E + SG+T ++ C F
Sbjct: 352 ALYSRIFDDFGTHYFTSGSLGGVYDLLYQFSSEELKNSGLTEEEAKHCVRIETKKRVLFA 411
Query: 1259 GSFGIDYDYTDNLQITGSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLT 1438
+++ T T LS KH + E IS +R L
Sbjct: 412 KKTKVEHRCT-----TNKLSEKH----------EGSFIQGAEKSISLIRGGRSEYGAALA 456
Query: 1439 -QNGSI----ITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQY 1603
+ GS T+ W S+K NPAVIDFE+ PI +++R N+ K NLR+AL +Y
Sbjct: 457 WEKGSSGLEEKTFSEWLESVKENPAVIDFELAPIVDLVR--NIPCAVTKRNNLRKALQEY 514
Query: 1604 LMEFNACRCGPCFNNGEPILVGTSCRCQCPVGCQGLACEQMKSE 1735
+F+ C+C PC NNG P L GT C C C G G CE+ +
Sbjct: 515 AAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCEKQSPD 558
Score = 33.5 bits (75), Expect(2) = 5e-68
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +3
Query: 1800 RKGRRECNNPAPQNGSASGFGHKVQTQAC 1886
R RECNNPAPQ G G K Q + C
Sbjct: 583 RSRTRECNNPAPQRGGKRCEGEKRQEEDC 611
>ref|NP_000056.2| complement component C6 precursor [Homo sapiens].
Length = 934
Score = 245 bits (625), Expect(2) = 5e-68
Identities = 162/524 (30%), Positives = 247/524 (47%), Gaps = 24/524 (4%)
Frame = +2
Query: 236 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 412
++C L ++ W++C PC +K+ + RS+L+P++FGG C+ + C C + +A
Sbjct: 80 INCLLGDFGPWSDCDPCIEKQSKVRSVLRPSQFGGQPCTAPLVAFQPCIPSKLCKIEEAD 139
Query: 413 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQ-YDPIPGSERATL 589
C F+C ++GRC+ R L CNG+ DC D SDE DC + C++ Y+PIP +
Sbjct: 140 CKNKFRC-DSGRCIARKLECNGENDCGDNSDERDCGRTKAV---CTRKYNPIPSVQLMGN 195
Query: 590 GYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLK 769
G++ L E V D + GG C+TV + +R P N
Sbjct: 196 GFHFLAGEPRGEVLDNSFTGGICKTVKSSR-----------------TSNPYRVPANLEN 238
Query: 770 YHFEA-LADSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRE- 943
FE A+ ++ Y D L + S S+ GS F+ + S R
Sbjct: 239 VGFEVQTAEDDLKTDFYKDLTSLGHNENQQGSFSS-------QGGSSFSVPIFYSSKRSE 291
Query: 944 -----SAFLNKLSKYNEKKYSFIRIFTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNY 1108
SAF + ++K SFIRI ++ +F + ++ L +V L++L LP +YN
Sbjct: 292 NINHNSAFKQAIQASHKKDSSFIRIHKVMKVLNFTTKAKDLHLSDVFLKALNHLPLEYNS 351
Query: 1109 GMYAKFIDDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSC----------FG 1258
+Y++ DD+GTHY TSGS+GGVY+ + + E + SG+T ++ C F
Sbjct: 352 ALYSRIFDDFGTHYFTSGSLGGVYDLLYQFSSEELKNSGLTEEEAKHCVRIETKKRVLFA 411
Query: 1259 GSFGIDYDYTDNLQITGSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLT 1438
+++ T T LS KH + E IS +R L
Sbjct: 412 KKTKVEHRCT-----TNKLSEKH----------EGSFIQGAEKSISLIRGGRSEYGAALA 456
Query: 1439 -QNGSI----ITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQY 1603
+ GS T+ W S+K NPAVIDFE+ PI +++R N+ K NLR+AL +Y
Sbjct: 457 WEKGSSGLEEKTFSEWLESVKENPAVIDFELAPIVDLVR--NIPCAVTKRNNLRKALQEY 514
Query: 1604 LMEFNACRCGPCFNNGEPILVGTSCRCQCPVGCQGLACEQMKSE 1735
+F+ C+C PC NNG P L GT C C C G G CE+ +
Sbjct: 515 AAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCEKQSPD 558
Score = 33.5 bits (75), Expect(2) = 5e-68
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +3
Query: 1800 RKGRRECNNPAPQNGSASGFGHKVQTQAC 1886
R RECNNPAPQ G G K Q + C
Sbjct: 583 RSRTRECNNPAPQRGGKRCEGEKRQEEDC 611
>ref|NP_001728.1| complement component C9 precursor [Homo sapiens].
Length = 559
Score = 252 bits (644), Expect = 8e-67
Identities = 164/573 (28%), Positives = 267/573 (46%), Gaps = 31/573 (5%)
Frame = +2
Query: 122 LAVAFFILSLMTCQPGVTIQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKKY 301
+A+ +S++T Q + ++ S + + + C++S W+EW++C PC + +
Sbjct: 9 VAICILEISILTAQYTTSYDPELTES------SGSASHIDCRMSPWSEWSQCDPCLRQMF 62
Query: 302 RYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQ--CGQDFQCKETGRCLKRHLVCN 475
R RS+ +F G C+ V D+ C PTE A+ CG DFQC TGRC+K L CN
Sbjct: 63 RSRSIEVFGQFNGKRCTDAVGDRRQC-VPTEPCEDAEDDCGNDFQCS-TGRCIKMRLRCN 120
Query: 476 GDRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGY--NILTQEETQSVYDARYYG 649
GD DC D SDEDDCE C T GY NIL + + +D +Y
Sbjct: 121 GDNDCGDFSDEDDCESEP--RPPCRDRVVEESELARTAGYGINILGMDPLSTPFDNEFYN 178
Query: 650 GQCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYHFEALADSKFSSESYDDAN 829
G C R G+ Y+R+P+N +E + F +E Y++
Sbjct: 179 G-----------------LCNRDRDGNTLTYYRRPWNVASLIYETKGEKNFRTEHYEEQI 221
Query: 830 DLLKKVKNEKS--VSAGVTVGIGPTGS--------PFTANVGLSG--------SRESAFL 955
+ K + EK+ +A +++ PT + +++ L G S+ +
Sbjct: 222 EAFKSIIQEKTSNFNAAISLKFTPTETNKAEQCCEETASSISLHGKGSFRFSYSKNETYQ 281
Query: 956 NKLSKYNEKKYSFIRIFTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNYGMYAKFIDD 1135
LS ++K+ F+ + ++ F MR +++L + + LP Y G Y F++
Sbjct: 282 LFLSYSSKKEKMFLHVKGEIHLGRFVMRNRDVVLTTTFVDDIKALPTTYEKGEYFAFLET 341
Query: 1136 YGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSL 1315
YGTHY +SGS+GG+YE I VL+K +M + GV D+ C G + +++ + +
Sbjct: 342 YGTHYSSSGSLGGLYELIYVLDKASMKRKGVELKDIKRCLGYHLDVSLAFSE-ISVGAEF 400
Query: 1316 SGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLTQ---NGSII---TYRAWGR 1477
+ C K G G + S ++D++S +R L + G++I + W
Sbjct: 401 NKDDCVKRGEGRAVNITSENLIDDVVSLIRGGTRKYAFELKEKLLRGTVIDVTDFVNWAS 460
Query: 1478 SLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACRCGPCFNNGEP 1657
S+ P +I ++ PIY ++ + K QNL RA++ Y+ EF+ +C C N G
Sbjct: 461 SINDAPVLISQKLSPIYNLV-PVKMKNAHLKKQNLERAIEDYINEFSVRKCHTCQNGGTV 519
Query: 1658 ILVGTSCRCQCPVGCQGLACE---QMKSEGAKA 1747
IL+ C C CP +G+ACE Q SEG A
Sbjct: 520 ILMDGKCLCACPFKFEGIACEISKQKISEGLPA 552
>ref|NP_000578.2| complement component C7 precursor [Homo sapiens].
Length = 843
Score = 212 bits (539), Expect(2) = 4e-57
Identities = 148/520 (28%), Positives = 225/520 (43%), Gaps = 8/520 (1%)
Frame = +2
Query: 218 SSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC 397
SS + V+CQ +A W+EC C + R RS+ ++GG C GN ++ SC C
Sbjct: 20 SSASSPVNCQWDFYAPWSECNGCTKTQTRRRSVAVYGQYGGQPCVGNAFETQSCEPTRGC 79
Query: 398 LRQAQCGQDFQCKETGRCLKRHLVCNGDRDC-LDGSDEDDCEDVRIFEDDCSQYDPIPGS 574
+ CG+ F+C +G+C+ + LVCNGD DC D +DED CED C P P
Sbjct: 80 PTEEGCGERFRC-FSGQCISKSLVCNGDSDCDEDSADEDRCEDSE-RRPSCDIDKPPPNI 137
Query: 575 ERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRKP 754
E GYN LT + V + + +GGQC V++ GD + ++R
Sbjct: 138 ELTGNGYNELTGQFRNRVINTKSFGGQCRKVFS-----------------GDGKDFYRLS 180
Query: 755 YNFLKYHFEALADSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGLSG 934
N L Y F+ ++ F+ E Y+ +K E + S+ F + S
Sbjct: 181 GNVLSYTFQVKINNDFNYEFYNSTWSYVKHTSTEHTSSS--------RKRSFFRSSSSSS 232
Query: 935 SRESAFLNKLSKYNEKKYSFIRIFTKVQTASF-KMRRDNIMLDEVMLQSLMELPEQYNYG 1111
++ N++ K K Y + + V+ A F + + L E + L LP Y+Y
Sbjct: 233 RSYTSHTNEIHK--GKSYQLLVVENTVEVAQFINNNPEFLQLAEPFWKELSHLPSLYDYS 290
Query: 1112 MYAKFIDDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYTD 1291
Y + ID YGTHY+ SGS+GG Y + ++ E + ++ S + C +
Sbjct: 291 AYRRLIDQYGTHYLQSGSLGGEYRVLFYVDSEKLKQNDFNSVEEKKCKSSGW-------- 342
Query: 1292 NLQITGSLSGKHCKKLGGGHREDEESNTAVEDIISRVRXXXXXXXXXLT------QNGSI 1453
S CK+L + + V +R L+ G+
Sbjct: 343 --HFVVKFSSHGCKELENALKAASGTQNNVLRGEPFIRGGGAGFISGLSYLELDNPAGNK 400
Query: 1454 ITYRAWGRSLKYNPAVIDFEMKPIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACRCG 1633
Y AW S+ P VI ++ P+YE+++ K L+ AL++YL EF+ C C
Sbjct: 401 RRYSAWAESVTNLPQVIKQKLTPLYELVKEVPCA--SVKKLYLKWALEEYLDEFDPCHCR 458
Query: 1634 PCFNNGEPILVGTSCRCQCPVGCQGLACEQMKSEGAKADG 1753
PC N G + GT C C C G ACEQ G +A G
Sbjct: 459 PCQNGGLATVEGTHCLCHCKPYTFGAACEQGVLVGNQAGG 498
Score = 30.0 bits (66), Expect(2) = 4e-57
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +3
Query: 1791 WAP----RKGR-RECNNPAPQNGSASGFGHKVQTQAC 1886
W+P +K R RECNNP P G S G ++ C
Sbjct: 509 WSPCVQGKKTRSRECNNPPPSGGGRSCVGETTESTQC 545
>ref|NP_001076585.1| perforin-1 precursor [Homo sapiens].
Length = 555
Score = 68.6 bits (166), Expect = 2e-11
Identities = 73/298 (24%), Positives = 124/298 (41%), Gaps = 9/298 (3%)
Frame = +2
Query: 824 ANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRESAFLNKLSKYNEKKYSFIRI 1003
A D + ++N+ V VT PT + +V ++GS A K ++ +YSF
Sbjct: 118 ARDAARSIRNDWKVGLDVTPK--PTSN---VHVSVAGSHSQAANFAAQKTHQDQYSFSTD 172
Query: 1004 FTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNYGM---YAKFIDDYGTHYITSGSMGG 1174
+ + SF + + + ++L +LP +N Y + I +YGTH+I + +GG
Sbjct: 173 TVECRFYSFHVVHTPPLHPDFK-RALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGG 231
Query: 1175 VYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSLS--GKHCKKLGGG 1348
+ L + G+T ++V C + + N+ I GS+S K C++
Sbjct: 232 RISALTALRTCELALEGLTDNEVEDC------LTVEAQVNIGIHGSISAEAKACEEKKKK 285
Query: 1349 HREDEESNTAVEDIISRVRXXXXXXXXXL---TQNGSIITYRAWGRSLKYNPAVIDFEMK 1519
H+ + + S V L Q G Y AW SL +P ++D+ ++
Sbjct: 286 HKMTASFHQTYRERHSEVVGGHHTSINDLLFGIQAGP-EQYSAWVNSLPGSPGLVDYTLE 344
Query: 1520 PIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACR-CGPCFNNGEPILVGTSCRCQC 1690
P+ H L + + + LRRAL QYL + R C G C+C C
Sbjct: 345 PL-----HVLLDSQDPRREALRRALSQYLTDRARWRDCSRPCPPGRQKSPRDPCQCVC 397
>ref|NP_005032.2| perforin-1 precursor [Homo sapiens].
Length = 555
Score = 68.6 bits (166), Expect = 2e-11
Identities = 73/298 (24%), Positives = 124/298 (41%), Gaps = 9/298 (3%)
Frame = +2
Query: 824 ANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRESAFLNKLSKYNEKKYSFIRI 1003
A D + ++N+ V VT PT + +V ++GS A K ++ +YSF
Sbjct: 118 ARDAARSIRNDWKVGLDVTPK--PTSN---VHVSVAGSHSQAANFAAQKTHQDQYSFSTD 172
Query: 1004 FTKVQTASFKMRRDNIMLDEVMLQSLMELPEQYNYGM---YAKFIDDYGTHYITSGSMGG 1174
+ + SF + + + ++L +LP +N Y + I +YGTH+I + +GG
Sbjct: 173 TVECRFYSFHVVHTPPLHPDFK-RALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGG 231
Query: 1175 VYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQITGSLS--GKHCKKLGGG 1348
+ L + G+T ++V C + + N+ I GS+S K C++
Sbjct: 232 RISALTALRTCELALEGLTDNEVEDC------LTVEAQVNIGIHGSISAEAKACEEKKKK 285
Query: 1349 HREDEESNTAVEDIISRVRXXXXXXXXXL---TQNGSIITYRAWGRSLKYNPAVIDFEMK 1519
H+ + + S V L Q G Y AW SL +P ++D+ ++
Sbjct: 286 HKMTASFHQTYRERHSEVVGGHHTSINDLLFGIQAGP-EQYSAWVNSLPGSPGLVDYTLE 344
Query: 1520 PIYEILRHTNLGPLEAKCQNLRRALDQYLMEFNACR-CGPCFNNGEPILVGTSCRCQC 1690
P+ H L + + + LRRAL QYL + R C G C+C C
Sbjct: 345 PL-----HVLLDSQDPRREALRRALSQYLTDRARWRDCSRPCPPGRQKSPRDPCQCVC 397
>ref|NP_001182728.1| low-density lipoprotein receptor isoform 3 precursor [Homo
sapiens].
Length = 819
Score = 53.9 bits (128), Expect = 6e-07
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +2
Query: 278 FPCQDKK---YRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQCGQD-FQCKETG 445
F CQD K Y++ +C G+ Q E C QD F+C + G
Sbjct: 32 FQCQDGKCISYKW------------VCDGSAECQDGSDESQETCSPKTCSQDEFRCHD-G 78
Query: 446 RCLKRHLVCNGDRDCLDGSDEDDC 517
+C+ R VC+ DRDCLDGSDE C
Sbjct: 79 KCISRQFVCDSDRDCLDGSDEASC 102
>ref|NP_705837.1| transmembrane protease serine 6 [Homo sapiens].
Length = 811
Score = 51.6 bits (122), Expect = 3e-06
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +2
Query: 335 GGTICSGNVWDQASCHSPTECL-----RQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDG 499
G +CS N +C +C R C FQCKE C+ VC+G DCL+G
Sbjct: 460 GEFLCSVNGLCVPACDGVKDCPNGLDERNCVCRATFQCKEDSTCISLPKVCDGQPDCLNG 519
Query: 500 SDEDDCED 523
SDE+ C++
Sbjct: 520 SDEEQCQE 527
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 85,550,062
Number of extensions: 2442462
Number of successful extensions: 10132
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 10026
Number of HSP's successfully gapped: 17
Length of query: 713
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 603
Effective length of database: 14,671,124
Effective search space: 8846687772
Effective search space used: 8846687772
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012469
(2139 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 486 e-134
gb|GL894714.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 365 7e-98
>Sscrofa_Chr06
|| Length = 157765593
Score = 486 bits (245), Expect = e-134
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 981 agaaatacagcttcatcaggattttcacaaaggtacagactgctagttttaagatgagga 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143249954 agaaatacagcttcatcaggattttcacaaaggtacagactgctagttttaagatgagga 143249895
Query: 1041 gggacaatattatgctggatgaagttatgctgcagtcattaatggagcttccggagcagt 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143249894 gggacaatattatgctggatgaagttatgctgcagtcattaatggagcttccggagcagt 143249835
Query: 1101 acaattacggcatgtacgccaagttcattgatgactacggcacccattatatcacgtctg 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143249834 acaattacggcatgtacgccaagttcattgatgactacggcacccattatatcacgtctg 143249775
Query: 1161 gatcgatgggtggtgtttatgaatatatcctggtgcttaacaaagaaaatatgacaaaat 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143249774 gatcgatgggtggtgtttatgaatatatcctggtgcttaacaaagaaaatatgacaaaat 143249715
Query: 1221 ctggt 1225
|||||
Sbjct: 143249714 ctggt 143249710
Score = 440 bits (222), Expect = e-120
Identities = 225/226 (99%)
Strand = Plus / Minus
Query: 1512 agatgaagcccatttacgagatactgcgccacacaaacctggggcccctggaggccaagt 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143222053 agatgaagcccatttacgagatactgcgccacacaaacctggggcccctggaggccaagt 143221994
Query: 1572 gccagaacctgcgacgggccttggatcagtacctgatggaattcaacgcctgccgctgtg 1631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143221993 gccagaacctgcgacgggccttggatcagtacctgatggaattcaacgcctgccgctgtg 143221934
Query: 1632 ggccctgcttcaacaatggcgagcccatcctcgtgggtaccagctgccggtgtcagtgcc 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143221933 ggccctgcttcaacaatggcgagcccatcctcgtgggtaccagctgccggtgtcagtgcc 143221874
Query: 1692 ctgtgggttgccagggccttgcctgtgagcaaatgaagtcagaggg 1737
||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 143221873 ctgtgggttaccagggccttgcctgtgagcaaatgaagtcagaggg 143221828
Score = 381 bits (192), Expect = e-102
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 591 ggtacaatattctgacccaggaagaaacgcagagtgtgtatgatgccaggtattatgggg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143254814 ggtacaatattctgacccaggaagaaacgcagagtgtgtatgatgccaggtattatgggg 143254755
Query: 651 gccagtgtgagactgtctacaacggggagtggagggagcttcggtatgactctgcctgtg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143254754 gccagtgtgagactgtctacaacggggagtggagggagcttcggtatgactctgcctgtg 143254695
Query: 711 agcgtctctactatggagatgatgagaagtacttccggaaaccctacaatttcctgaagt 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143254694 agcgtctctactatggagatgatgagaagtacttccggaaaccctacaatttcctgaagt 143254635
Query: 771 accacttcgaag 782
||||||||||||
Sbjct: 143254634 accacttcgaag 143254623
Score = 315 bits (159), Expect = 6e-83
Identities = 187/201 (93%)
Strand = Plus / Minus
Query: 782 gccctggcagacagtaaattttcctcagagtcatacgatgatgcaaatgaccttcttnnn 841
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143251835 gccctggcagacagtaaattttcctcagagtcatacgatgatgcaaatgaccttcttaaa 143251776
Query: 842 nnnnnnnnnnntgagaagtctgtgtcagctggagtgaccgttggtataggccctacaggt 901
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143251775 aaagtaaaaaatgagaagtctgtgtcagctggagtgaccgttggtataggccctacaggt 143251716
Query: 902 agcccatttacagcaaatgtgggcttatcagggtcacgagagtctgcgttcttgaacaag 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143251715 agcccatttacagcaaatgtgggcttatcagggtcacgagagtctgcgttcttgaacaag 143251656
Query: 962 ctaagcaagtataacgagaag 982
|||||||||||||||||||||
Sbjct: 143251655 ctaagcaagtataacgagaag 143251635
Score = 309 bits (156), Expect = 3e-81
Identities = 159/160 (99%)
Strand = Plus / Minus
Query: 1354 agaagacgaagagagcaacacggctgtggaagacatcatttctcgggtgcgaggtggcag 1413
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 143226726 agaagacgaagagagcaacatggctgtggaagacatcatttctcgggtgcgaggtggcag 143226667
Query: 1414 ttctggctggggcggtggcttgacgcaaaacggcagcatcattacataccgtgcctgggg 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143226666 ttctggctggggcggtggcttgacgcaaaacggcagcatcattacataccgtgcctgggg 143226607
Query: 1474 gaggtcattaaagtataatcctgctgttattgattttgag 1513
||||||||||||||||||||||||||||||||||||||||
Sbjct: 143226606 gaggtcattaaagtataatcctgctgttattgattttgag 143226567
Score = 303 bits (153), Expect = 2e-79
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 441 cagggcgctgcctgaaacgccacctcgtgtgtaacggagacagggactgcctggatggct 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143260105 cagggcgctgcctgaaacgccacctcgtgtgtaacggagacagggactgcctggatggct 143260046
Query: 501 ctgacgaggatgactgtgaagatgtcaggatcttcgaagatgactgcagccagtatgacc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143260045 ctgacgaggatgactgtgaagatgtcaggatcttcgaagatgactgcagccagtatgacc 143259986
Query: 561 cgattccaggatcggagagggcgaccttggggt 593
|||||||||||||||||||||||||||||||||
Sbjct: 143259985 cgattccaggatcggagagggcgaccttggggt 143259953
Score = 281 bits (142), Expect = 8e-73
Identities = 191/202 (94%), Gaps = 4/202 (1%)
Strand = Plus / Minus
Query: 1736 ggagccaaggctgatggtcgctggagctgctggagctcctggtctgcttgcagattgggc 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143218164 ggagccaaggctgatggtcgctggagctgctggagctcctggtctgcttgcagattgggc 143218105
Query: 1796 acccaggaaaggaaggagagagtgtaacaaccctgcaccccaaaatggaagtgcctccgg 1855
|||||||||||| ||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct: 143218104 acccaggaaagg-aggagagagtgtaacaaccctgcaccccagaatggaggtgcct-cgt 143218047
Query: 1856 gttc-ggccacaaagtgcaaacccaggcatgctgaagggcctctgggcacaggctggaac 1914
|||| ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 143218046 gttcaggccacatagtgcagacccaggcatgctg-agggcctctgggcacaggctggaac 143217988
Query: 1915 ccacccagcaaacatcaccgcc 1936
|||||||||| || ||||||||
Sbjct: 143217987 ccacccagcagacgtcaccgcc 143217966
Score = 270 bits (136), Expect = 3e-69
Identities = 145/148 (97%)
Strand = Plus / Minus
Query: 297 agtacagataccggagcctcctgcagccaaacaagtttgggggaaccatctgcagtggga 356
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 143261232 agtacagataccggagcctcctgcagccaaacaagtttgggggagccatctgcagtggga 143261173
Query: 357 acgtctgggaccaagccagctgtcacagtcccacagagtgtctaaggcaagcacagtgtg 416
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 143261172 acgtctgggaccaagccagctgtcacagccccacagagtgtctgaggcaagcacagtgtg 143261113
Query: 417 gacaggatttccagtgtaaggagacagg 444
||||||||||||||||||||||||||||
Sbjct: 143261112 gacaggatttccagtgtaaggagacagg 143261085
Score = 256 bits (129), Expect = 4e-65
Identities = 132/133 (99%)
Strand = Plus / Minus
Query: 1223 ggtgttaccagtgatgatgtcacatcatgctttggagggtcttttggcatcgactatgac 1282
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143228346 ggtgttaccagcgatgatgtcacatcatgctttggagggtcttttggcatcgactatgac 143228287
Query: 1283 tatacagataacttacaaattacaggaagtttatcaggaaaacattgtaaaaaacttgga 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143228286 tatacagataacttacaaattacaggaagtttatcaggaaaacattgtaaaaaacttgga 143228227
Query: 1343 ggtggccacagag 1355
|||||||||||||
Sbjct: 143228226 ggtggccacagag 143228214
Score = 206 bits (104), Expect = 4e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 195 ggagagtcagtcgggctgttctgagctccacccccacagccgtttcctgccagctaagca 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143266588 ggagagtcagtcgggctgttctgagctccacccccacagccgtttcctgccagctaagca 143266529
Query: 255 actgggcagagtggacagaatgcttcccatgccaggacaaaaag 298
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143266528 actgggcagagtggacagaatgcttcccatgccaggacaaaaag 143266485
>gb|GL894714.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3351
Length = 27555
Score = 365 bits (184), Expect = 7e-98
Identities = 187/188 (99%)
Strand = Plus / Plus
Query: 14 cattagatagatcttctaggtcctggtctgtagacacctcttacttcaactccctaagta 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20501 cattagatagatcttctaggtcctggtctgtagacacctcttacttcaactccctaagta 20560
Query: 74 gttttagtccttctttgtaatatagggtagtggcttctggatgagatgttggctgttgct 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20561 gttttagtccttctttgtaatatagggtagtggcttctggatgagatgttggctgttgct 20620
Query: 134 tttttcatcttgtctttgatgacttgtcagcctggggtaaccatacaggagaaggtgaac 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20621 tttttcatcttgtctttgatgacttgtcagcctggggtaaccatacaggagaaggtgaac 20680
Query: 194 cggagagt 201
||| ||||
Sbjct: 20681 cggtgagt 20688
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 60,424,070
Number of extensions: 482
Number of successful extensions: 482
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 12
Length of query: 2139
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2117
Effective length of database: 2,808,408,574
Effective search space: 5945400951158
Effective search space used: 5945400951158
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)