Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012470
(789 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039750.1| complement component C8 alpha chain [Bos tau... 445 e-125
Alignment gi|NP_001039431.1| complement component C7 precursor [Bos tauru... 118 7e-27
Alignment gi|NP_001039606.2| complement component 8, beta polypeptide [Bo... 117 9e-27
Alignment gi|NP_001030441.1| complement component C9 precursor [Bos tauru... 114 1e-25
Alignment gi|NP_001039444.1| complement component C6 precursor [Bos tauru... 102 3e-22
Alignment gi|XP_002685444.1| PREDICTED: low density lipoprotein receptor ... 52 8e-07
Alignment gi|XP_618582.4| PREDICTED: low density lipoprotein-related prot... 52 8e-07
Alignment gi|NP_001071311.1| low-density lipoprotein receptor-related pro... 49 5e-06
Alignment gi|NP_001179686.1| sortilin-related receptor [Bos taurus]. 48 8e-06
Alignment gi|XP_002693133.1| PREDICTED: sortilin-related receptor, L(DLR ... 48 8e-06
>ref|NP_001039750.1| complement component C8 alpha chain [Bos taurus].
Length = 589
Score = 445 bits (1144), Expect = e-125
Identities = 203/227 (89%), Positives = 211/227 (92%)
Frame = +2
Query: 107 MLAVAFFILSLMTCQPGVTIQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKK 286
M A AFF+L LMT QPGVTIQEKVN RVSRAV S TPTAVSCQL NWAEWT+CFPCQDKK
Sbjct: 1 MFAAAFFLLFLMTYQPGVTIQEKVNWRVSRAVQSFTPTAVSCQLDNWAEWTDCFPCQDKK 60
Query: 287 YRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNG 466
YRYRSLLQPNKFGGTICSGNVWDQASCHSPT CL QAQCGQDFQCKETGRCLKRHLVCNG
Sbjct: 61 YRYRSLLQPNKFGGTICSGNVWDQASCHSPTACLSQAQCGQDFQCKETGRCLKRHLVCNG 120
Query: 467 DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQC 646
D+DCLDGSDEDDCEDVRI E+DCSQYDPIPGSE+A LGYNILTQEE Q VYDARYYGGQC
Sbjct: 121 DKDCLDGSDEDDCEDVRILENDCSQYDPIPGSEKAALGYNILTQEEAQHVYDARYYGGQC 180
Query: 647 ETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYHFEALADSK 787
ETVYNGEWREL+YD ACERLYYGDD+KYFRKPYNFLKYHFEA AD+K
Sbjct: 181 ETVYNGEWRELQYDPACERLYYGDDDKYFRKPYNFLKYHFEAQADTK 227
>ref|NP_001039431.1| complement component C7 precursor [Bos taurus].
Length = 843
Score = 118 bits (295), Expect = 7e-27
Identities = 59/160 (36%), Positives = 88/160 (55%), Gaps = 1/160 (0%)
Frame = +2
Query: 200 VLSSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPT 379
V SS + ++CQ ++A W+EC C + R RS+ ++GG C G+ ++ C
Sbjct: 18 VFSSASSPINCQWGSYAPWSECNGCTKTQTRRRSIAVYGQYGGHSCVGSAFETQPCQPTR 77
Query: 380 ECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDC-LDGSDEDDCEDVRIFEDDCSQYDPIP 556
C + CG+ F+C +G+C+ + LVCNGD DC DG+DED CED C + P P
Sbjct: 78 GCPTEDGCGERFRC-FSGQCISKSLVCNGDSDCEEDGADEDRCEDAE-SRPACDKDKPPP 135
Query: 557 GSERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRE 676
E GYN LT + V + + +GGQC VY+G+ R+
Sbjct: 136 NIELTGRGYNALTGQFRNQVLNTKSFGGQCRKVYSGDGRD 175
>ref|NP_001039606.2| complement component 8, beta polypeptide [Bos taurus].
Length = 590
Score = 117 bits (294), Expect = 9e-27
Identities = 67/180 (37%), Positives = 91/180 (50%), Gaps = 1/180 (0%)
Frame = +2
Query: 212 TPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLR 391
TP + C+LS+W+ WT C PCQ K+YR+ L++P++F G C+ + + C S C
Sbjct: 59 TPLPIDCELSSWSSWTTCDPCQKKRYRHAYLIRPSQFHGEQCNFSDKEVEDCVSNRPCRS 118
Query: 392 QAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDC-EDVRIFEDDCSQYDPIPGSER 568
Q +C + F C +TGRC+ R L+CNGD DC D SDE +C + + + + QY I GS
Sbjct: 119 QVRC-EGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCRKTYKKCQQEMEQYWAI-GS-- 174
Query: 569 ATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYN 748
G N+ T V D RYY G C Y R FRKPYN
Sbjct: 175 LASGINLFTNNLEGPVLDHRYYAGLCSPHYILNTR-------------------FRKPYN 215
>ref|NP_001030441.1| complement component C9 precursor [Bos taurus].
Length = 548
Score = 114 bits (285), Expect = 1e-25
Identities = 67/203 (33%), Positives = 97/203 (47%), Gaps = 13/203 (6%)
Frame = +2
Query: 212 TPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLR 391
TP + C++S+W+EW++C PC + +R RS+ +F G C V D+ C PTE
Sbjct: 35 TPLPIDCRMSSWSEWSKCDPCLKQMFRSRSIEIFGQFNGRKCVDAVGDRQQC-VPTEACE 93
Query: 392 QAQ--CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQYDPIPG-- 559
+ CG DFQC TGRC+K L+CN D DC D SDED+CE DP P
Sbjct: 94 DPEEGCGNDFQC-GTGRCIKNRLLCNEDNDCGDYSDEDNCEQ-----------DPRPPCR 141
Query: 560 ---------SERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYY 712
+ A G NIL + + +D +YY G C+R++
Sbjct: 142 NRVVEESELARTAGFGINILGMDPLSTPFDNQYYNG-----------------LCDRVWD 184
Query: 713 GDDEKYFRKPYNFLKYHFEALAD 781
G+ Y+R+P+N ++ AD
Sbjct: 185 GNTLTYYRRPWNVASLTYDTKAD 207
>ref|NP_001039444.1| complement component C6 precursor [Bos taurus].
Length = 932
Score = 102 bits (255), Expect = 3e-22
Identities = 50/146 (34%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Frame = +2
Query: 224 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 400
++C+L ++ W++C PC K+++ RS+L+P++FGG C+ + C C + +
Sbjct: 80 INCRLGDYGPWSDCDPCVQKRFKVRSILRPSQFGGQPCTEPLMTFQPCIPSKLCKIEEID 139
Query: 401 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQ-YDPIPGSERATL 577
C F+C ++GRC+ L CNG+ DC D SDE +C + CS+ ++PIPG + +
Sbjct: 140 CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRKKTV---CSRSHNPIPGVQLMGM 195
Query: 578 GYNILTQEETQSVYDARYYGGQCETV 655
G++ L E V D + GG C TV
Sbjct: 196 GFHFLAGEPRGEVLDNSFTGGVCRTV 221
>ref|XP_002685444.1| PREDICTED: low density lipoprotein receptor related protein-deleted
in tumor-like, partial [Bos taurus].
Length = 4375
Score = 51.6 bits (122), Expect = 8e-07
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +2
Query: 353 DQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCED 511
D+ C+ LR F C+ TGRC+ + VC+GD DC D SDEDDC++
Sbjct: 1116 DEKGCNGT---LRLCDHKTKFSCRSTGRCISKAWVCDGDIDCEDQSDEDDCDN 1165
>ref|XP_618582.4| PREDICTED: low density lipoprotein-related protein 1B, partial [Bos
taurus].
Length = 1678
Score = 51.6 bits (122), Expect = 8e-07
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +2
Query: 353 DQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCED 511
D+ C+ LR F C+ TGRC+ + VC+GD DC D SDEDDC++
Sbjct: 1116 DEKGCNGT---LRLCDHKTKFSCRSTGRCISKAWVCDGDIDCEDQSDEDDCDN 1165
>ref|NP_001071311.1| low-density lipoprotein receptor-related protein 4 [Bos taurus].
Length = 1905
Score = 48.9 bits (115), Expect = 5e-06
Identities = 28/80 (35%), Positives = 41/80 (51%)
Frame = +2
Query: 266 FPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLK 445
FPCQ+ Y RSL C G+ + +S +C + ++F+C + G C+
Sbjct: 115 FPCQNG-YCIRSLWH--------CDGD--NDCGDNSDEQCDMRKCSDKEFRCSD-GSCIA 162
Query: 446 RHLVCNGDRDCLDGSDEDDC 505
H C+GD DC DGSDE+ C
Sbjct: 163 EHWYCDGDTDCKDGSDEESC 182
Score = 48.5 bits (114), Expect = 6e-06
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 341 GNVWDQASCHSPTECLRQAQCGQ-DFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVR 517
G+ D+ C PT C DF C + G+C++R VC+GD DC D SDE DC
Sbjct: 58 GDHSDEDGCKLPT-------CSPLDFHC-DNGKCIRRSWVCDGDNDCEDDSDEQDCPPRE 109
Query: 518 IFEDD 532
ED+
Sbjct: 110 CEEDE 114
>ref|NP_001179686.1| sortilin-related receptor [Bos taurus].
Length = 2211
Score = 48.1 bits (113), Expect = 8e-06
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +2
Query: 341 GNVWDQASCHSPTE---CLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCED 511
G+ D+A+C +PTE C R Q FQC E G C+ C+ + DC D SDE DC D
Sbjct: 1348 GDDSDEANCENPTEAPTCSRYFQ----FQC-ENGHCIPNRWKCDRENDCGDWSDEKDCGD 1402
Query: 512 VRIFEDDCSQYDPIPGSERATLGY 583
I P PG Y
Sbjct: 1403 SHILP------SPTPGPSTCLPNY 1420
>ref|XP_002693133.1| PREDICTED: sortilin-related receptor, L(DLR class) A
repeats-containing [Bos taurus].
Length = 2310
Score = 48.1 bits (113), Expect = 8e-06
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +2
Query: 341 GNVWDQASCHSPTE---CLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCED 511
G+ D+A+C +PTE C R Q FQC E G C+ C+ + DC D SDE DC D
Sbjct: 1447 GDDSDEANCENPTEAPTCSRYFQ----FQC-ENGHCIPNRWKCDRENDCGDWSDEKDCGD 1501
Query: 512 VRIFEDDCSQYDPIPGSERATLGY 583
I P PG Y
Sbjct: 1502 SHILP------SPTPGPSTCLPNY 1519
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,278,478
Number of extensions: 900674
Number of successful extensions: 3897
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3845
Number of HSP's successfully gapped: 11
Length of query: 263
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 163
Effective length of database: 14,372,574
Effective search space: 2342729562
Effective search space used: 2342729562
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Animal-Genome cDNA 20110601C-012470
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012470
(789 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536695.2| PREDICTED: similar to complement component 8, a... 436 e-122
Alignment gi|XP_536694.2| PREDICTED: similar to Complement component C8 b... 119 4e-27
Alignment gi|XP_546339.2| PREDICTED: similar to complement component 7 pr... 106 3e-23
Alignment gi|XP_536489.2| PREDICTED: similar to complement component 6 [C... 101 7e-22
Alignment gi|XP_868028.1| PREDICTED: similar to Complement component C6 p... 101 7e-22
Alignment gi|XP_536488.2| PREDICTED: similar to Complement component C6 p... 101 7e-22
Alignment gi|XP_536494.2| PREDICTED: similar to Complement component C9 p... 96 4e-20
Alignment gi|XP_868034.1| PREDICTED: similar to complement component 7 pr... 82 4e-16
Alignment gi|XP_536545.2| PREDICTED: similar to sortilin-related receptor... 52 5e-07
Alignment gi|XP_533343.2| PREDICTED: similar to Low-density lipoprotein r... 51 1e-06
>ref|XP_536695.2| PREDICTED: similar to complement component 8, alpha polypeptide
precursor [Canis familiaris].
Length = 589
Score = 436 bits (1120), Expect = e-122
Identities = 196/227 (86%), Positives = 210/227 (92%)
Frame = +2
Query: 107 MLAVAFFILSLMTCQPGVTIQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKK 286
M A AFFILSLM CQPGVTIQEKVNRRVSRAV S+ TAV CQLSNW+EWT+CFPCQDKK
Sbjct: 1 MFAAAFFILSLMICQPGVTIQEKVNRRVSRAVQSAPITAVPCQLSNWSEWTDCFPCQDKK 60
Query: 287 YRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNG 466
YRYRSLLQP+KFGGTICSG+VWDQASCHSPT CL QAQCGQDFQCKETGRCLKRHLVCNG
Sbjct: 61 YRYRSLLQPDKFGGTICSGDVWDQASCHSPTACLHQAQCGQDFQCKETGRCLKRHLVCNG 120
Query: 467 DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQC 646
D+DCLDGSDEDDCEDVR+ E+DCSQY+PIPGSE A LGYNILTQ+E Q VYD RYYGGQC
Sbjct: 121 DKDCLDGSDEDDCEDVRVAENDCSQYEPIPGSESAALGYNILTQKEAQHVYDPRYYGGQC 180
Query: 647 ETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYHFEALADSK 787
ETVYNGEWRE+RYD CERLYYG+DEKYFRKPYNFLKYHFEALAD++
Sbjct: 181 ETVYNGEWREIRYDPTCERLYYGEDEKYFRKPYNFLKYHFEALADTR 227
>ref|XP_536694.2| PREDICTED: similar to Complement component C8 beta chain precursor
(Complement component 8 beta subunit) [Canis
familiaris].
Length = 590
Score = 119 bits (297), Expect = 4e-27
Identities = 65/179 (36%), Positives = 89/179 (49%)
Frame = +2
Query: 224 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQC 403
+ C+LS+W+ WT C PCQ K+YR+ SLL+P++F G C+ + + C + C Q +C
Sbjct: 63 IDCELSSWSSWTMCDPCQKKRYRHASLLRPSQFYGEPCNFSDKEVEDCVTSRPCRSQVRC 122
Query: 404 GQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGY 583
+ F C +TGRC+ R L+CNGD DC D SDE +C RI++ + + R G
Sbjct: 123 -EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCR--RIYKKCQHEMEQYWAIGRLASGV 179
Query: 584 NILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKY 760
N+ T V D RYY G C Y R FRKPYN Y
Sbjct: 180 NLFTNSFEGPVLDHRYYAGGCSPHYILNTR-------------------FRKPYNVESY 219
>ref|XP_546339.2| PREDICTED: similar to complement component 7 precursor isoform 1
[Canis familiaris].
Length = 863
Score = 106 bits (264), Expect = 3e-23
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 1/157 (0%)
Frame = +2
Query: 200 VLSSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPT 379
+ S + V+CQ +A W+EC C + RS+ ++GG C G+ ++ C
Sbjct: 18 IFSRAASPVNCQWDTYAPWSECNGCTKTQTHRRSVAVYGQYGGHPCVGSAFETQPCEPTR 77
Query: 380 ECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDC-LDGSDEDDCEDVRIFEDDCSQYDPIP 556
C + CG+ F+C +G+C+ + LVCNGD DC D +DED CED C P P
Sbjct: 78 GCPTEEGCGERFRCF-SGQCISKSLVCNGDSDCEEDSADEDKCEDSE-SRPSCDLDQPPP 135
Query: 557 GSERATLGYNILTQEETQSVYDARYYGGQCETVYNGE 667
E GYN LT + V + + +GGQC V++G+
Sbjct: 136 NIELTGNGYNELTGQFKNKVINTKSFGGQCRKVFSGD 172
>ref|XP_536489.2| PREDICTED: similar to complement component 6 [Canis familiaris].
Length = 2211
Score = 101 bits (252), Expect = 7e-22
Identities = 48/145 (33%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Frame = +2
Query: 224 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 400
++C L ++ W++C PC +K+++ RS+L+P++FGG C+ + C C + +
Sbjct: 57 INCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEPLVTFQPCIPSKLCKIEEID 116
Query: 401 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLG 580
C F+C ++GRC+ L CNG+ DC D SDE +C + Q++PIP + G
Sbjct: 117 CKNKFRC-DSGRCIANKLECNGENDCGDNSDERNCGRAKAVCPGKRQWNPIPSVQLMGAG 175
Query: 581 YNILTQEETQSVYDARYYGGQCETV 655
++ L E V D + GG C+TV
Sbjct: 176 FHFLAGEPRGEVLDNSFTGGICKTV 200
>ref|XP_868028.1| PREDICTED: similar to Complement component C6 precursor isoform 2
[Canis familiaris].
Length = 936
Score = 101 bits (252), Expect = 7e-22
Identities = 48/145 (33%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Frame = +2
Query: 224 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 400
++C L ++ W++C PC +K+++ RS+L+P++FGG C+ + C C + +
Sbjct: 80 INCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEPLVTFQPCIPSKLCKIEEID 139
Query: 401 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLG 580
C F+C ++GRC+ L CNG+ DC D SDE +C + Q++PIP + G
Sbjct: 140 CKNKFRC-DSGRCIANKLECNGENDCGDNSDERNCGRAKAVCPGKRQWNPIPSVQLMGAG 198
Query: 581 YNILTQEETQSVYDARYYGGQCETV 655
++ L E V D + GG C+TV
Sbjct: 199 FHFLAGEPRGEVLDNSFTGGICKTV 223
>ref|XP_536488.2| PREDICTED: similar to Complement component C6 precursor isoform 1
[Canis familiaris].
Length = 936
Score = 101 bits (252), Expect = 7e-22
Identities = 48/145 (33%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Frame = +2
Query: 224 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 400
++C L ++ W++C PC +K+++ RS+L+P++FGG C+ + C C + +
Sbjct: 80 INCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEPLVTFQPCIPSKLCKIEEID 139
Query: 401 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLG 580
C F+C ++GRC+ L CNG+ DC D SDE +C + Q++PIP + G
Sbjct: 140 CKNKFRC-DSGRCIANKLECNGENDCGDNSDERNCGRAKAVCPGKRQWNPIPSVQLMGAG 198
Query: 581 YNILTQEETQSVYDARYYGGQCETV 655
++ L E V D + GG C+TV
Sbjct: 199 FHFLAGEPRGEVLDNSFTGGICKTV 223
>ref|XP_536494.2| PREDICTED: similar to Complement component C9 precursor [Canis
familiaris].
Length = 589
Score = 95.9 bits (237), Expect = 4e-20
Identities = 68/213 (31%), Positives = 101/213 (47%), Gaps = 21/213 (9%)
Frame = +2
Query: 206 SSTPTAVSCQLSNWAEWTECFPCQDK------------KYRYRSLLQPNKFGG-----TI 334
+ TP V C++S+W++W+EC PC + ++ RS+ +F G +
Sbjct: 44 NDTPFPVDCRMSSWSQWSECDPCLKQMVKILIFPAGFVQFPSRSIQVFRQFKGQKGVAAL 103
Query: 335 CSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCE-D 511
+ WD +P E + G DF C+ TGRC+K+ L+CNGD DC D SDEDDCE D
Sbjct: 104 GNRGHWDPGDPCAPGE---EDWGGGDFGCR-TGRCIKKRLLCNGDNDCGDFSDEDDCESD 159
Query: 512 VRIFEDDCSQYDPIPGSERATL---GYNILTQEETQSVYDARYYGGQCETVYNGEWRELR 682
R+ C + + SE A + G NIL E + +D YY G
Sbjct: 160 PRL---PCRE-KVVEESELARMAGYGINILGMEPLSTPFDNEYYNG-------------- 201
Query: 683 YDSACERLYYGDDEKYFRKPYNFLKYHFEALAD 781
C+R+ G+ Y+R+P+N +E AD
Sbjct: 202 ---LCDRVRDGNTLVYYRRPWNVASLVYETKAD 231
>ref|XP_868034.1| PREDICTED: similar to complement component 7 precursor isoform 2
[Canis familiaris].
Length = 143
Score = 82.4 bits (202), Expect = 4e-16
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Frame = +2
Query: 200 VLSSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPT 379
+ S + V+CQ +A W+EC C + RS+ ++GG C G+ ++ C
Sbjct: 18 IFSRAASPVNCQWDTYAPWSECNGCTKTQTHRRSVAVYGQYGGHPCVGSAFETQPCEPTR 77
Query: 380 ECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDC-LDGSDEDDCEDVRIFEDDCSQYDPIP 556
C + CG+ F+C +G+C+ + LVCNGD DC D +DED CED C P P
Sbjct: 78 GCPTEEGCGERFRC-FSGQCISKSLVCNGDSDCEEDSADEDKCEDSE-SRPSCDLDQPPP 135
Query: 557 GSE 565
E
Sbjct: 136 NIE 138
>ref|XP_536545.2| PREDICTED: similar to sortilin-related receptor containing LDLR class
A repeats preproprotein [Canis familiaris].
Length = 2204
Score = 52.4 bits (124), Expect = 5e-07
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 341 GNVWDQASCHSPTECLRQAQCGQDFQCK-ETGRCLKRHLVCNGDRDCLDGSDEDDCEDVR 517
G+ D+A+C +PTE C + FQ + E G C+ C+G+ DC D SDE DC D+
Sbjct: 1341 GDYSDEANCENPTEA---PNCSRYFQFRCENGHCIPNRWKCDGENDCGDWSDEKDCGDLH 1397
Query: 518 IFEDDCSQYDPIPGSERATLGY 583
I P PG Y
Sbjct: 1398 ILP------SPTPGPSTCLPNY 1413
>ref|XP_533343.2| PREDICTED: similar to Low-density lipoprotein receptor-related
protein 1B precursor (Low-density lipoprotein
receptor-related protein-deleted in tumor) (LRP-DIT)
[Canis familiaris].
Length = 4492
Score = 50.8 bits (120), Expect = 1e-06
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +2
Query: 353 DQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCE 508
D+ C+ LR F C+ TGRC+ + +C+GD DC D SDEDDC+
Sbjct: 977 DEKGCNGT---LRLCDHKTKFSCRSTGRCINKAWICDGDIDCEDQSDEDDCD 1025
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,627,117
Number of extensions: 928057
Number of successful extensions: 3890
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3859
Number of HSP's successfully gapped: 13
Length of query: 263
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 162
Effective length of database: 15,507,568
Effective search space: 2512226016
Effective search space used: 2512226016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012470
(789 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090919.1| complement component C8 alpha chain [Sus scr... 484 e-137
Alignment gi|NP_001090920.1| complement component C8B [Sus scrofa]. 123 1e-28
Alignment gi|NP_001090917.1| complement component C9 [Sus scrofa]. 117 9e-27
Alignment gi|NP_999447.1| complement component C7 precursor [Sus scrofa]. 112 2e-25
Alignment gi|NP_001090918.1| complement component C6 [Sus scrofa]. 102 2e-22
Alignment gi|XP_003359813.1| PREDICTED: complement component C6-like [Sus... 102 3e-22
Alignment gi|XP_003126347.2| PREDICTED: prolow-density lipoprotein recept... 49 2e-06
Alignment gi|XP_003355405.1| PREDICTED: transmembrane protease serine 6-l... 47 9e-06
>ref|NP_001090919.1| complement component C8 alpha chain [Sus scrofa].
Length = 589
Score = 484 bits (1247), Expect = e-137
Identities = 224/227 (98%), Positives = 224/227 (98%)
Frame = +2
Query: 107 MLAVAFFILSLMTCQPGVTIQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKK 286
MLAVAFFILSLMTCQPGVTI EKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKK
Sbjct: 1 MLAVAFFILSLMTCQPGVTIPEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKK 60
Query: 287 YRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNG 466
YRYRSLLQPNKFGG ICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNG
Sbjct: 61 YRYRSLLQPNKFGGAICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNG 120
Query: 467 DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQC 646
DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQC
Sbjct: 121 DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQC 180
Query: 647 ETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYHFEALADSK 787
ETVYNGEWRELRYDSACERLYYGDDEKYFR PYNFLKYHFEALADSK
Sbjct: 181 ETVYNGEWRELRYDSACERLYYGDDEKYFRNPYNFLKYHFEALADSK 227
>ref|NP_001090920.1| complement component C8B [Sus scrofa].
Length = 611
Score = 123 bits (308), Expect = 1e-28
Identities = 68/195 (34%), Positives = 95/195 (48%)
Frame = +2
Query: 164 IQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSG 343
+ E + + + T T + C+LS+W+ WT C PCQ K+YR+ SLL+P++F G C+
Sbjct: 55 VNESLGKSRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCNF 114
Query: 344 NVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIF 523
+ + C S C Q +C + F C +TGRC+ R L+CNGD DC D SDE +C+ RI+
Sbjct: 115 SDKEVEDCVSNRPCRSQVRC-EGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCK--RIY 171
Query: 524 EDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACER 703
+ + D G N+ T V D RYY G C Y R
Sbjct: 172 KKCQQEMDQYWAIGSLASGINLFTNNLEGPVLDHRYYAGACSPHYILNTR---------- 221
Query: 704 LYYGDDEKYFRKPYN 748
FRKPYN
Sbjct: 222 ---------FRKPYN 227
>ref|NP_001090917.1| complement component C9 [Sus scrofa].
Length = 543
Score = 117 bits (292), Expect = 9e-27
Identities = 71/197 (36%), Positives = 96/197 (48%), Gaps = 5/197 (2%)
Frame = +2
Query: 206 SSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC 385
+ TP+ + C++S W EW+ C PC + +R RS+ +F G C V D+ C PTE
Sbjct: 35 NGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQC-VPTEP 93
Query: 386 LRQAQ--CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCE-DVRIFEDDCSQYDPIP 556
+ CG DFQC TGRC+KR L+CNGD DC D SDEDDC+ D R C +
Sbjct: 94 CEDLEEDCGSDFQCG-TGRCIKRRLLCNGDNDCGDFSDEDDCDSDPR---PPCRERVVEE 149
Query: 557 GSERATLGY--NILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKY 730
T GY NIL + + +D YY G C+R+ G+ Y
Sbjct: 150 SELARTAGYGINILGMDPLTTPFDNEYYNG-----------------LCDRVRDGNTLTY 192
Query: 731 FRKPYNFLKYHFEALAD 781
+RKP+N +E D
Sbjct: 193 YRKPWNVAALIYETKVD 209
>ref|NP_999447.1| complement component C7 precursor [Sus scrofa].
Length = 843
Score = 112 bits (281), Expect = 2e-25
Identities = 58/160 (36%), Positives = 86/160 (53%), Gaps = 1/160 (0%)
Frame = +2
Query: 200 VLSSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPT 379
V SS + V+CQ ++A W+EC C + R R + ++GG C G+ ++ SC
Sbjct: 18 VFSSASSPVNCQWDSYAPWSECNGCTKTQTRRRPVAVYGQYGGHPCVGSTFETQSCEPTR 77
Query: 380 ECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDC-LDGSDEDDCEDVRIFEDDCSQYDPIP 556
C + CG+ F+C +G+C+ + LVCNGD DC D +DED CED C P P
Sbjct: 78 GCPTEEGCGERFRCF-SGQCISKSLVCNGDSDCEEDSADEDRCEDSE-SRPSCDLSKPPP 135
Query: 557 GSERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRE 676
E GYN LT + V + + +GGQC V++G+ R+
Sbjct: 136 NIELTGNGYNALTGQFRNRVLNTKSFGGQCRKVFSGDGRD 175
>ref|NP_001090918.1| complement component C6 [Sus scrofa].
Length = 935
Score = 102 bits (254), Expect = 2e-22
Identities = 51/146 (34%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Frame = +2
Query: 224 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 400
++C L ++ W++C PC +K+++ RS+L+PN+FGG C+ + C C + +
Sbjct: 80 INCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 139
Query: 401 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCS-QYDPIPGSERATL 577
C F+C ++GRC+ L CNG+ DC D SDE +C + CS +Y+PIP +
Sbjct: 140 CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIPSVQLMGA 195
Query: 578 GYNILTQEETQSVYDARYYGGQCETV 655
G++IL E V + GG C+TV
Sbjct: 196 GFHILAGEPRGEVLGNSFTGGICKTV 221
>ref|XP_003359813.1| PREDICTED: complement component C6-like [Sus scrofa].
Length = 267
Score = 102 bits (253), Expect = 3e-22
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Frame = +2
Query: 224 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 400
++C L ++ W++C PC +K+++ RS+L PN+FGG C+ + C C + +
Sbjct: 81 INCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 140
Query: 401 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCS-QYDPIPGSERATL 577
C F+C ++GRC+ L CNG+ DC D SDE +C + CS +Y+PIP +
Sbjct: 141 CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIPSVQLMGA 196
Query: 578 GYNILTQEETQSVYDARYYGGQCETV 655
G++IL E V + GG C+TV
Sbjct: 197 GFHILAGEPRGEVLGNSFTGGICKTV 222
>ref|XP_003126347.2| PREDICTED: prolow-density lipoprotein receptor-related protein
1-like [Sus scrofa].
Length = 1598
Score = 49.3 bits (116), Expect = 2e-06
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Frame = +2
Query: 311 PNKFGGTI---CSGNVWDQASCHSPTECL---------RQAQCGQD-FQCKETGRCLKRH 451
PN+F +I C VW C +C+ Q CG D F+CK++GRC+
Sbjct: 509 PNQFQCSITKRCIPRVW---VCDRDNDCVDGSDEPANCTQMTCGVDEFRCKDSGRCIPAR 565
Query: 452 LVCNGDRDCLDGSDE--DDCED--VRIFEDDCSQYDPIPG 559
C+G+ DC DGSDE ++C++ ++ C +PG
Sbjct: 566 WKCDGEDDCGDGSDEPKEECDERTCEPYQFRCKNNRCVPG 605
>ref|XP_003355405.1| PREDICTED: transmembrane protease serine 6-like [Sus scrofa].
Length = 509
Score = 47.4 bits (111), Expect = 9e-06
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = +2
Query: 323 GGTICSGNVWDQASCHSPTECL-----RQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDG 487
G +CS N +C +C R C FQC+E C+ VC+ DCL+G
Sbjct: 158 GEFLCSVNGLCVPACDGVKDCPNGLDERNCVCRATFQCQEDSTCISLSRVCDRQPDCLNG 217
Query: 488 SDEDDCED 511
SDE+ C++
Sbjct: 218 SDEEQCQE 225
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,121,242
Number of extensions: 578763
Number of successful extensions: 2407
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2384
Number of HSP's successfully gapped: 8
Length of query: 263
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 166
Effective length of database: 8,928,923
Effective search space: 1482201218
Effective search space used: 1482201218
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012470
(789 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666260.1| complement component C8 alpha chain precursor [... 412 e-115
Alignment gi|NP_038513.1| complement component C9 [Mus musculus]. 129 3e-30
Alignment gi|NP_598643.1| complement component C8 beta chain precursor [M... 121 5e-28
Alignment gi|NP_001230766.1| complement component C7 [Mus musculus]. 114 6e-26
Alignment gi|NP_057913.2| complement component 6 [Mus musculus]. 92 4e-19
Alignment gi|NP_034830.2| low-density lipoprotein receptor [Mus musculus]. 52 7e-07
Alignment gi|XP_992216.3| PREDICTED: low-density lipoprotein receptor-rel... 50 1e-06
Alignment gi|XP_003084810.1| PREDICTED: low-density lipoprotein receptor-... 50 2e-06
Alignment gi|NP_032538.2| prolow-density lipoprotein receptor-related pro... 49 3e-06
Alignment gi|NP_001139329.1| low-density lipoprotein receptor-related pro... 49 4e-06
>ref|NP_666260.1| complement component C8 alpha chain precursor [Mus musculus].
Length = 587
Score = 412 bits (1058), Expect = e-115
Identities = 186/226 (82%), Positives = 204/226 (90%)
Frame = +2
Query: 107 MLAVAFFILSLMTCQPGVTIQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKK 286
M VAFF LSL+ PGVT QEKVN+RV+RAV TP AVSCQLS+W +WT+CFPCQDKK
Sbjct: 1 MFVVAFFGLSLVAWHPGVTAQEKVNQRVTRAV---TPQAVSCQLSDWYKWTDCFPCQDKK 57
Query: 287 YRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNG 466
YRYRSLLQP+KFGGTICSG++WD+ASC SPT CLRQAQCGQDFQC+ETGRCLKRHLVCNG
Sbjct: 58 YRYRSLLQPSKFGGTICSGDIWDEASCDSPTPCLRQAQCGQDFQCRETGRCLKRHLVCNG 117
Query: 467 DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQC 646
D DCLDGSDE DCEDVR+ EDDC QY+PIPGSERA LGYNILTQEE QSVYDA+YYGGQC
Sbjct: 118 DNDCLDGSDESDCEDVRVTEDDCHQYEPIPGSERAALGYNILTQEEAQSVYDAKYYGGQC 177
Query: 647 ETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYHFEALADS 784
ETVYNG+WR+LRYD CERLYYG+DEKYFRKPYNFLKYHFEALAD+
Sbjct: 178 ETVYNGDWRKLRYDPTCERLYYGEDEKYFRKPYNFLKYHFEALADT 223
>ref|NP_038513.1| complement component C9 [Mus musculus].
Length = 561
Score = 129 bits (324), Expect = 3e-30
Identities = 77/227 (33%), Positives = 109/227 (48%), Gaps = 3/227 (1%)
Frame = +2
Query: 110 LAVAFFILSLMTCQPGVTIQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKKY 289
LA+A F L + P +E+ + P + C++S W+ W+EC PC +++
Sbjct: 22 LALAIFALGVNAQMPIPVSREEQEQHY--------PIPIDCRMSPWSNWSECDPCLKQRF 73
Query: 290 RYRSLLQPNKFGGTICSGNVWDQASCHSPTECLR-QAQCGQDFQCKETGRCLKRHLVCNG 466
R RS+L +F G C + D+ C EC Q CG DFQC ETGRC+KR L+CNG
Sbjct: 74 RSRSILAFGQFNGKSCVDVLGDRQGCEPTQECEEIQENCGNDFQC-ETGRCIKRRLLCNG 132
Query: 467 DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGY--NILTQEETQSVYDARYYGG 640
D DC D SDE+DC+D C T GY NIL E ++ +D +Y G
Sbjct: 133 DNDCGDYSDENDCDDDP--RTPCRDRVAEESELGLTAGYGINILGMEPLRTPFDNEFYNG 190
Query: 641 QCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYHFEALAD 781
C+ V D++ Y+RKP+N + +E AD
Sbjct: 191 LCDRV-------------------RDEKTYYRKPWNVVSLIYETKAD 218
>ref|NP_598643.1| complement component C8 beta chain precursor [Mus musculus].
Length = 589
Score = 121 bits (304), Expect = 5e-28
Identities = 68/195 (34%), Positives = 96/195 (49%)
Frame = +2
Query: 176 VNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWD 355
V R R+V + P + C+LS W+ WT C PCQ K+YR+ LL+P++F G +C + +
Sbjct: 47 VKSRPVRSV-AEAPAPIDCELSTWSSWTACDPCQKKRYRHTYLLRPSQFYGELCDLSDKE 105
Query: 356 QASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDC 535
C + C Q +C + F C +TGRC+ R L+CNGD DC D SDE +C RI+++
Sbjct: 106 VEDCVTNQPCRSQVRC-EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCR--RIYKNCQ 162
Query: 536 SQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYG 715
+ + +R G N+ T V D RYY G C Y +
Sbjct: 163 REMEQYWAIDRLASGINLFTNTFEGPVLDHRYYAGGCSPHYILDTN-------------- 208
Query: 716 DDEKYFRKPYNFLKY 760
FRKPYN Y
Sbjct: 209 -----FRKPYNVESY 218
>ref|NP_001230766.1| complement component C7 [Mus musculus].
Length = 845
Score = 114 bits (286), Expect = 6e-26
Identities = 62/196 (31%), Positives = 98/196 (50%), Gaps = 1/196 (0%)
Frame = +2
Query: 200 VLSSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPT 379
V S + V+C+ ++ W+EC C + R RS+ ++GG C G+ ++ SC
Sbjct: 18 VFSRASSPVNCKWDSYGPWSECNGCTKTQTRRRSVAVYGQYGGYPCEGSAFETQSCKPER 77
Query: 380 ECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDC-LDGSDEDDCEDVRIFEDDCSQYDPIP 556
C + CG F+C +G+C+ + LVCNGD DC DG+DED CE+V C+ P P
Sbjct: 78 GCPTEEGCGDRFRC-FSGQCISKSLVCNGDPDCEEDGADEDKCENVA--NPSCNIDKPPP 134
Query: 557 GSERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFR 736
E GYN++T + + V + + +GGQC V++ GD + ++R
Sbjct: 135 NIELTGYGYNVVTGQGKKRVINTKSFGGQCRKVFS-----------------GDGKDFYR 177
Query: 737 KPYNFLKYHFEALADS 784
N L Y F+ D+
Sbjct: 178 LSGNILSYTFQVKVDN 193
>ref|NP_057913.2| complement component 6 [Mus musculus].
Length = 769
Score = 92.0 bits (227), Expect = 4e-19
Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 2/146 (1%)
Frame = +2
Query: 224 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 400
++C L ++ W++C PC +K+ + +S+L+P++FGG C+ + C C + +
Sbjct: 80 INCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEPLVTFQPCVPSKLCKIEETN 139
Query: 401 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQ-YDPIPGSERATL 577
C F C ++GRC+ L CNG+ DC D SDE +C + C++ Y PIP +
Sbjct: 140 CKNKFLC-DSGRCIPSKLECNGENDCGDNSDERNCGRTK---PVCTRIYTPIPSVQLMGT 195
Query: 578 GYNILTQEETQSVYDARYYGGQCETV 655
G++ L E V D + GG C+ V
Sbjct: 196 GFHFLAGEPRGEVLDNSFTGGICKLV 221
>ref|NP_034830.2| low-density lipoprotein receptor [Mus musculus].
Length = 862
Score = 51.6 bits (122), Expect = 7e-07
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Frame = +2
Query: 308 QPNKF--GGTI--CSGNVW---DQASCHSPTE---CLRQAQCGQDFQCKETGRCLKRHLV 457
Q N+F GG + C + W Q C + ++ C + DF+C++ G+C+ V
Sbjct: 69 QSNQFSCGGRVSRCIPDSWRCDGQVDCENDSDEQGCPPKTCSQDDFRCQD-GKCISPQFV 127
Query: 458 CNGDRDCLDGSDEDDCE 508
C+GDRDCLDGSDE C+
Sbjct: 128 CDGDRDCLDGSDEAHCQ 144
>ref|XP_992216.3| PREDICTED: low-density lipoprotein receptor-related protein 2-like
[Mus musculus].
Length = 1974
Score = 50.4 bits (119), Expect = 1e-06
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +2
Query: 311 PNKFGGTICSGNVW---DQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCL 481
PN G T N + D +C +C +QC CK+ RC+ + +C+G DCL
Sbjct: 1711 PNPEGKTCWCPNGYCLVDGHTCMEAVQCSPMSQC-----CKDGQRCISKEQICDGHVDCL 1765
Query: 482 DGSDEDDC 505
DGSDE DC
Sbjct: 1766 DGSDEVDC 1773
Score = 47.8 bits (112), Expect = 1e-05
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +2
Query: 383 CLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDC 505
C + +FQC E G+C+ L C+GDRDCLD SDE+ C
Sbjct: 880 CFHEKCSSPEFQC-ENGQCISSSLRCDGDRDCLDHSDEEGC 919
>ref|XP_003084810.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like
[Mus musculus].
Length = 976
Score = 50.1 bits (118), Expect = 2e-06
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +2
Query: 311 PNKFGGTICSGNVW---DQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCL 481
PN G T N + D +C +C +QC CK+ RC+ + +C+G DCL
Sbjct: 713 PNPEGKTCWCPNGYCLVDGHTCVEAVQCSPMSQC-----CKDGQRCISKEQICDGHVDCL 767
Query: 482 DGSDEDDC 505
DGSDE DC
Sbjct: 768 DGSDEVDC 775
>ref|NP_032538.2| prolow-density lipoprotein receptor-related protein 1 [Mus musculus].
Length = 4545
Score = 49.3 bits (116), Expect = 3e-06
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Frame = +2
Query: 311 PNKFGGTI---CSGNVWDQASCHSPTECL---------RQAQCGQD-FQCKETGRCLKRH 451
PN+F +I C VW C +C+ Q CG D F+CK++GRC+
Sbjct: 3456 PNQFQCSITKRCIPRVW---VCDRDNDCVDGSDEPANCTQMTCGVDEFRCKDSGRCIPAR 3512
Query: 452 LVCNGDRDCLDGSDE--DDCED--VRIFEDDCSQYDPIPG 559
C+G+ DC DGSDE ++C++ ++ C +PG
Sbjct: 3513 WKCDGEDDCGDGSDEPKEECDERTCEPYQFRCKNNRCVPG 3552
Score = 48.1 bits (113), Expect = 7e-06
Identities = 24/62 (38%), Positives = 33/62 (53%)
Frame = +2
Query: 323 GGTICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDD 502
G T C + D+ SC T F CK++ RC+ + VC+GD DC D SDE++
Sbjct: 1085 GDTDCMDSS-DEKSCEGVTHV---CDPNVKFGCKDSARCISKAWVCDGDSDCEDNSDEEN 1140
Query: 503 CE 508
CE
Sbjct: 1141 CE 1142
>ref|NP_001139329.1| low-density lipoprotein receptor-related protein 4 isoform 2 [Mus
musculus].
Length = 519
Score = 48.9 bits (115), Expect = 4e-06
Identities = 28/80 (35%), Positives = 41/80 (51%)
Frame = +2
Query: 266 FPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLK 445
FPCQ+ Y RSL C G+ + +S +C + ++F+C + G C+
Sbjct: 115 FPCQNG-YCIRSLWH--------CDGD--NDCGDNSDEQCDMRKCSDKEFRCSD-GSCIA 162
Query: 446 RHLVCNGDRDCLDGSDEDDC 505
H C+GD DC DGSDE+ C
Sbjct: 163 EHWYCDGDTDCKDGSDEESC 182
Score = 48.1 bits (113), Expect = 7e-06
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 341 GNVWDQASCHSPTECLRQAQCGQ-DFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVR 517
G+ D+ C PT C DF C + G+C++R VC+GD DC D SDE DC
Sbjct: 58 GDHSDEDGCTLPT-------CSPLDFHC-DNGKCIRRSWVCDGDNDCEDDSDEQDCPPRE 109
Query: 518 IFEDD 532
ED+
Sbjct: 110 CEEDE 114
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,280,390
Number of extensions: 777856
Number of successful extensions: 3625
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3540
Number of HSP's successfully gapped: 17
Length of query: 263
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 164
Effective length of database: 12,643,995
Effective search space: 2073615180
Effective search space used: 2073615180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012470
(789 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000553.1| complement component C8 alpha chain precursor [... 427 e-120
Alignment gi|NP_000057.1| complement component C8 beta chain preproprotei... 121 8e-28
Alignment gi|NP_000578.2| complement component C7 precursor [Homo sapiens]. 110 1e-24
Alignment gi|NP_001728.1| complement component C9 precursor [Homo sapiens]. 108 4e-24
Alignment gi|NP_001108603.2| complement component C6 precursor [Homo sapi... 102 5e-22
Alignment gi|NP_000056.2| complement component C6 precursor [Homo sapiens]. 102 5e-22
Alignment gi|NP_001182728.1| low-density lipoprotein receptor isoform 3 p... 54 2e-07
Alignment gi|NP_705837.1| transmembrane protease serine 6 [Homo sapiens]. 52 8e-07
Alignment gi|NP_001182727.1| low-density lipoprotein receptor isoform 2 p... 50 3e-06
Alignment gi|NP_000518.1| low-density lipoprotein receptor isoform 1 prec... 50 3e-06
>ref|NP_000553.1| complement component C8 alpha chain precursor [Homo sapiens].
Length = 584
Score = 427 bits (1098), Expect = e-120
Identities = 192/226 (84%), Positives = 209/226 (92%)
Frame = +2
Query: 107 MLAVAFFILSLMTCQPGVTIQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKK 286
M AV FFILSLMTCQPGVT QEKVN+RV RA +TP AV+CQLSNW+EWT+CFPCQDKK
Sbjct: 1 MFAVVFFILSLMTCQPGVTAQEKVNQRVRRA---ATPAAVTCQLSNWSEWTDCFPCQDKK 57
Query: 287 YRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQCGQDFQCKETGRCLKRHLVCNG 466
YR+RSLLQPNKFGGTICSG++WDQASC S T C+RQAQCGQDFQCKETGRCLKRHLVCNG
Sbjct: 58 YRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNG 117
Query: 467 DRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGYNILTQEETQSVYDARYYGGQC 646
D+DCLDGSDEDDCEDVR ++DCSQY+PIPGS++A LGYNILTQE+ QSVYDA YYGGQC
Sbjct: 118 DQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQSVYDASYYGGQC 177
Query: 647 ETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYHFEALADS 784
ETVYNGEWRELRYDS CERLYYGDDEKYFRKPYNFLKYHFEALAD+
Sbjct: 178 ETVYNGEWRELRYDSTCERLYYGDDEKYFRKPYNFLKYHFEALADT 223
>ref|NP_000057.1| complement component C8 beta chain preproprotein [Homo sapiens].
Length = 591
Score = 121 bits (303), Expect = 8e-28
Identities = 67/179 (37%), Positives = 88/179 (49%)
Frame = +2
Query: 224 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQC 403
+ C+LS+W+ WT C PCQ K+YRY LLQP++F G C+ + + C + C Q +C
Sbjct: 63 IDCELSSWSSWTTCDPCQKKRYRYAYLLQPSQFHGEPCNFSDKEVEDCVTNRPCGSQVRC 122
Query: 404 GQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERATLGY 583
+ F C +TGRC+ R L+CNGD DC D SDE +C RI++ + D G G
Sbjct: 123 -EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCR--RIYKKCQHEMDQYWGIGSLASGI 179
Query: 584 NILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKY 760
N+ T V D RYY G C Y R FRKPYN Y
Sbjct: 180 NLFTNSFEGPVLDHRYYAGGCSPHYILNTR-------------------FRKPYNVESY 219
>ref|NP_000578.2| complement component C7 precursor [Homo sapiens].
Length = 843
Score = 110 bits (276), Expect = 1e-24
Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
Frame = +2
Query: 206 SSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC 385
SS + V+CQ +A W+EC C + R RS+ ++GG C GN ++ SC C
Sbjct: 20 SSASSPVNCQWDFYAPWSECNGCTKTQTRRRSVAVYGQYGGQPCVGNAFETQSCEPTRGC 79
Query: 386 LRQAQCGQDFQCKETGRCLKRHLVCNGDRDC-LDGSDEDDCEDVRIFEDDCSQYDPIPGS 562
+ CG+ F+C +G+C+ + LVCNGD DC D +DED CED C P P
Sbjct: 80 PTEEGCGERFRC-FSGQCISKSLVCNGDSDCDEDSADEDRCEDSE-RRPSCDIDKPPPNI 137
Query: 563 ERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRE 676
E GYN LT + V + + +GGQC V++G+ ++
Sbjct: 138 ELTGNGYNELTGQFRNRVINTKSFGGQCRKVFSGDGKD 175
>ref|NP_001728.1| complement component C9 precursor [Homo sapiens].
Length = 559
Score = 108 bits (271), Expect = 4e-24
Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 9/229 (3%)
Frame = +2
Query: 110 LAVAFFILSLMTCQPGVTIQEKVNRRVSRAVLSSTPTAVSCQLSNWAEWTECFPCQDKKY 289
+A+ +S++T Q + ++ S + + + C++S W+EW++C PC + +
Sbjct: 9 VAICILEISILTAQYTTSYDPELTES------SGSASHIDCRMSPWSEWSQCDPCLRQMF 62
Query: 290 RYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQ--CGQDFQCKETGRCLKRHLVCN 463
R RS+ +F G C+ V D+ C PTE A+ CG DFQC TGRC+K L CN
Sbjct: 63 RSRSIEVFGQFNGKRCTDAVGDRRQC-VPTEPCEDAEDDCGNDFQCS-TGRCIKMRLRCN 120
Query: 464 GDRDCLDGSDEDDCEDV-------RIFEDDCSQYDPIPGSERATLGYNILTQEETQSVYD 622
GD DC D SDEDDCE R+ E+ + A G NIL + + +D
Sbjct: 121 GDNDCGDFSDEDDCESEPRPPCRDRVVEES-------ELARTAGYGINILGMDPLSTPFD 173
Query: 623 ARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRKPYNFLKYHFE 769
+Y G C R G+ Y+R+P+N +E
Sbjct: 174 NEFYNG-----------------LCNRDRDGNTLTYYRRPWNVASLIYE 205
>ref|NP_001108603.2| complement component C6 precursor [Homo sapiens].
Length = 934
Score = 102 bits (253), Expect = 5e-22
Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Frame = +2
Query: 224 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 400
++C L ++ W++C PC +K+ + RS+L+P++FGG C+ + C C + +A
Sbjct: 80 INCLLGDFGPWSDCDPCIEKQSKVRSVLRPSQFGGQPCTAPLVAFQPCIPSKLCKIEEAD 139
Query: 401 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCS-QYDPIPGSERATL 577
C F+C ++GRC+ R L CNG+ DC D SDE DC + C+ +Y+PIP +
Sbjct: 140 CKNKFRC-DSGRCIARKLECNGENDCGDNSDERDCGRTKAV---CTRKYNPIPSVQLMGN 195
Query: 578 GYNILTQEETQSVYDARYYGGQCETV 655
G++ L E V D + GG C+TV
Sbjct: 196 GFHFLAGEPRGEVLDNSFTGGICKTV 221
>ref|NP_000056.2| complement component C6 precursor [Homo sapiens].
Length = 934
Score = 102 bits (253), Expect = 5e-22
Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Frame = +2
Query: 224 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTEC-LRQAQ 400
++C L ++ W++C PC +K+ + RS+L+P++FGG C+ + C C + +A
Sbjct: 80 INCLLGDFGPWSDCDPCIEKQSKVRSVLRPSQFGGQPCTAPLVAFQPCIPSKLCKIEEAD 139
Query: 401 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCS-QYDPIPGSERATL 577
C F+C ++GRC+ R L CNG+ DC D SDE DC + C+ +Y+PIP +
Sbjct: 140 CKNKFRC-DSGRCIARKLECNGENDCGDNSDERDCGRTKAV---CTRKYNPIPSVQLMGN 195
Query: 578 GYNILTQEETQSVYDARYYGGQCETV 655
G++ L E V D + GG C+TV
Sbjct: 196 GFHFLAGEPRGEVLDNSFTGGICKTV 221
>ref|NP_001182728.1| low-density lipoprotein receptor isoform 3 precursor [Homo
sapiens].
Length = 819
Score = 53.9 bits (128), Expect = 2e-07
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +2
Query: 266 FPCQDKK---YRYRSLLQPNKFGGTICSGNVWDQASCHSPTECLRQAQCGQD-FQCKETG 433
F CQD K Y++ +C G+ Q E C QD F+C + G
Sbjct: 32 FQCQDGKCISYKW------------VCDGSAECQDGSDESQETCSPKTCSQDEFRCHD-G 78
Query: 434 RCLKRHLVCNGDRDCLDGSDEDDC 505
+C+ R VC+ DRDCLDGSDE C
Sbjct: 79 KCISRQFVCDSDRDCLDGSDEASC 102
>ref|NP_705837.1| transmembrane protease serine 6 [Homo sapiens].
Length = 811
Score = 51.6 bits (122), Expect = 8e-07
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +2
Query: 323 GGTICSGNVWDQASCHSPTECL-----RQAQCGQDFQCKETGRCLKRHLVCNGDRDCLDG 487
G +CS N +C +C R C FQCKE C+ VC+G DCL+G
Sbjct: 460 GEFLCSVNGLCVPACDGVKDCPNGLDERNCVCRATFQCKEDSTCISLPKVCDGQPDCLNG 519
Query: 488 SDEDDCED 511
SDE+ C++
Sbjct: 520 SDEEQCQE 527
>ref|NP_001182727.1| low-density lipoprotein receptor isoform 2 precursor [Homo
sapiens].
Length = 858
Score = 49.7 bits (117), Expect = 3e-06
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 326 GTICSGNVWDQASCHSPTECLRQAQCGQD-FQCKETGRCLKRHLVCNGDRDCLDGSDEDD 502
G + N D+ C T C QD F+C + G+C+ R VC+ DRDCLDGSDE
Sbjct: 91 GQVDCDNGSDEQGCPPKT-------CSQDEFRCHD-GKCISRQFVCDSDRDCLDGSDEAS 142
Query: 503 C 505
C
Sbjct: 143 C 143
>ref|NP_000518.1| low-density lipoprotein receptor isoform 1 precursor [Homo
sapiens].
Length = 860
Score = 49.7 bits (117), Expect = 3e-06
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 326 GTICSGNVWDQASCHSPTECLRQAQCGQD-FQCKETGRCLKRHLVCNGDRDCLDGSDEDD 502
G + N D+ C T C QD F+C + G+C+ R VC+ DRDCLDGSDE
Sbjct: 91 GQVDCDNGSDEQGCPPKT-------CSQDEFRCHD-GKCISRQFVCDSDRDCLDGSDEAS 142
Query: 503 C 505
C
Sbjct: 143 C 143
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,144,688
Number of extensions: 922149
Number of successful extensions: 3931
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3894
Number of HSP's successfully gapped: 14
Length of query: 263
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 162
Effective length of database: 14,967,800
Effective search space: 2424783600
Effective search space used: 2424783600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012470
(789 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 381 e-103
gb|GL894714.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 365 2e-98
>Sscrofa_Chr06
|| Length = 157765593
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 579 ggtacaatattctgacccaggaagaaacgcagagtgtgtatgatgccaggtattatgggg 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143254814 ggtacaatattctgacccaggaagaaacgcagagtgtgtatgatgccaggtattatgggg 143254755
Query: 639 gccagtgtgagactgtctacaacggggagtggagggagcttcggtatgactctgcctgtg 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143254754 gccagtgtgagactgtctacaacggggagtggagggagcttcggtatgactctgcctgtg 143254695
Query: 699 agcgtctctactatggagatgatgagaagtacttccggaaaccctacaatttcctgaagt 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143254694 agcgtctctactatggagatgatgagaagtacttccggaaaccctacaatttcctgaagt 143254635
Query: 759 accacttcgaag 770
||||||||||||
Sbjct: 143254634 accacttcgaag 143254623
Score = 280 bits (141), Expect = 1e-72
Identities = 150/153 (98%)
Strand = Plus / Minus
Query: 429 cagggcgctgcctgaaacgccacctcgtgtgtaacggagacagggactgcctggatggct 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143260105 cagggcgctgcctgaaacgccacctcgtgtgtaacggagacagggactgcctggatggct 143260046
Query: 489 ctgacgaggatgactgtgaagatgtcaggatcttcgaagatgactgcagccagtacgacc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 143260045 ctgacgaggatgactgtgaagatgtcaggatcttcgaagatgactgcagccagtatgacc 143259986
Query: 549 caattccgggatcggagagggcgaccttggggt 581
| ||||| |||||||||||||||||||||||||
Sbjct: 143259985 cgattccaggatcggagagggcgaccttggggt 143259953
Score = 270 bits (136), Expect = 1e-69
Identities = 145/148 (97%)
Strand = Plus / Minus
Query: 285 agtacagataccggagcctcctgcagccaaacaagtttgggggaaccatctgcagtggga 344
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 143261232 agtacagataccggagcctcctgcagccaaacaagtttgggggagccatctgcagtggga 143261173
Query: 345 acgtctgggaccaagccagctgtcacagtcccacagagtgtctaaggcaagcacagtgtg 404
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 143261172 acgtctgggaccaagccagctgtcacagccccacagagtgtctgaggcaagcacagtgtg 143261113
Query: 405 gacaggatttccagtgtaaggagacagg 432
||||||||||||||||||||||||||||
Sbjct: 143261112 gacaggatttccagtgtaaggagacagg 143261085
Score = 206 bits (104), Expect = 1e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 183 ggagagtcagtcgggctgttctgagctccacccccacagccgtttcctgccagctaagca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143266588 ggagagtcagtcgggctgttctgagctccacccccacagccgtttcctgccagctaagca 143266529
Query: 243 actgggcagagtggacagaatgcttcccatgccaggacaaaaag 286
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143266528 actgggcagagtggacagaatgcttcccatgccaggacaaaaag 143266485
>gb|GL894714.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3351
Length = 27555
Score = 365 bits (184), Expect = 2e-98
Identities = 187/188 (99%)
Strand = Plus / Plus
Query: 2 cattagatagatcttctaggtcctggtctgtagacacctcttacttcaactccctaagta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20501 cattagatagatcttctaggtcctggtctgtagacacctcttacttcaactccctaagta 20560
Query: 62 gttttagtccttctttgtaatatagggtagtggcttctggatgagatgttggctgttgct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20561 gttttagtccttctttgtaatatagggtagtggcttctggatgagatgttggctgttgct 20620
Query: 122 tttttcatcttgtctttgatgacttgtcagcctggggtaaccatacaggagaaggtgaac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20621 tttttcatcttgtctttgatgacttgtcagcctggggtaaccatacaggagaaggtgaac 20680
Query: 182 cggagagt 189
||| ||||
Sbjct: 20681 cggtgagt 20688
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,144,718
Number of extensions: 381
Number of successful extensions: 381
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 5
Length of query: 789
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 768
Effective length of database: 2,808,413,156
Effective search space: 2156861303808
Effective search space used: 2156861303808
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)