Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012471
(1084 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035594.1| protein transport protein Sec61 subunit alph... 601 e-172
Alignment gi|NP_001039989.1| protein transport protein Sec61 subunit alph... 588 e-168
>ref|NP_001035594.1| protein transport protein Sec61 subunit alpha isoform 1 [Bos taurus].
Length = 476
Score = 601 bits (1550), Expect = e-172
Identities = 306/312 (98%), Positives = 308/312 (98%)
Frame = +1
Query: 148 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 327
M IKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 328 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 507
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 508 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 687
M ITIGQSIVYVMTGMYGDPSEMGAG+CLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MTITIGQSIVYVMTGMYGDPSEMGAGVCLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 688 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 867
LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 868 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYHTYPIKLFYNSKIPIILQSALVSN 1047
NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQY+TYPIKLFY S IPIILQSALVSN
Sbjct: 241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 300
Query: 1048 LYVISQMLSARF 1083
LYVISQMLSARF
Sbjct: 301 LYVISQMLSARF 312
>ref|NP_001039989.1| protein transport protein Sec61 subunit alpha isoform 2 [Bos taurus].
Length = 476
Score = 588 bits (1517), Expect = e-168
Identities = 296/312 (94%), Positives = 304/312 (97%)
Frame = +1
Query: 148 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 327
M IKFLEVIKPFC +LPEIQKPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 328 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 507
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 508 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 687
MIITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 688 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 867
LFIATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 868 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYHTYPIKLFYNSKIPIILQSALVSN 1047
NLMNLIAT+FVFAVVIYFQGFRVDLPIKSARYRGQY +YPIKLFY S IPIILQSALVSN
Sbjct: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
Query: 1048 LYVISQMLSARF 1083
LYVISQMLS RF
Sbjct: 301 LYVISQMLSVRF 312
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,544,581
Number of extensions: 1042593
Number of successful extensions: 4366
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4342
Number of HSP's successfully gapped: 2
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012471
(1084 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003315.1| protein transport protein Sec61 subunit alph... 605 e-173
Alignment gi|XP_535191.2| PREDICTED: similar to Sec61, alpha subunit 2 [C... 586 e-167
>ref|NP_001003315.1| protein transport protein Sec61 subunit alpha isoform 1 [Canis lupus
familiaris].
Length = 476
Score = 605 bits (1560), Expect = e-173
Identities = 309/312 (99%), Positives = 310/312 (99%)
Frame = +1
Query: 148 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 327
MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 328 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 507
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 508 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 687
MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 688 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 867
LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 868 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYHTYPIKLFYNSKIPIILQSALVSN 1047
NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQY+TYPIKLFY S IPIILQSALVSN
Sbjct: 241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 300
Query: 1048 LYVISQMLSARF 1083
LYVISQMLSARF
Sbjct: 301 LYVISQMLSARF 312
>ref|XP_535191.2| PREDICTED: similar to Sec61, alpha subunit 2 [Canis familiaris].
Length = 551
Score = 586 bits (1511), Expect = e-167
Identities = 294/310 (94%), Positives = 303/310 (97%)
Frame = +1
Query: 154 IKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPF 333
+KFLEVIKPFC +LPEIQKPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSADPF
Sbjct: 78 VKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPF 137
Query: 334 YWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMI 513
YWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMI
Sbjct: 138 YWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMI 197
Query: 514 ITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLF 693
ITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGISLF
Sbjct: 198 ITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLF 257
Query: 694 IATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNL 873
IATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLPNL
Sbjct: 258 IATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNL 317
Query: 874 MNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYHTYPIKLFYNSKIPIILQSALVSNLY 1053
MNLIAT+FVFAVVIYFQGFRVDLPIKSARYRGQY +YPIKLFY S IPIILQSALVSNLY
Sbjct: 318 MNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLY 377
Query: 1054 VISQMLSARF 1083
VISQMLS RF
Sbjct: 378 VISQMLSVRF 387
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,323,774
Number of extensions: 1082719
Number of successful extensions: 4845
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4796
Number of HSP's successfully gapped: 2
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012471
(1084 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130856.1| PREDICTED: protein transport protein Sec61 s... 588 e-168
Alignment gi|XP_003360745.1| PREDICTED: protein transport protein Sec61 s... 556 e-159
Alignment gi|XP_003361138.1| PREDICTED: protein transport protein Sec61 s... 533 e-152
Alignment gi|XP_001924516.2| PREDICTED: protein transport protein Sec61 s... 456 e-128
>ref|XP_003130856.1| PREDICTED: protein transport protein Sec61 subunit alpha isoform
2-like [Sus scrofa].
Length = 476
Score = 588 bits (1517), Expect = e-168
Identities = 296/312 (94%), Positives = 304/312 (97%)
Frame = +1
Query: 148 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 327
M IKFLEVIKPFC +LPEIQKPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 328 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 507
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 508 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 687
MIITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 688 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 867
LFIATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 868 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYHTYPIKLFYNSKIPIILQSALVSN 1047
NLMNLIAT+FVFAVVIYFQGFRVDLPIKSARYRGQY +YPIKLFY S IPIILQSALVSN
Sbjct: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
Query: 1048 LYVISQMLSARF 1083
LYVISQMLS RF
Sbjct: 301 LYVISQMLSVRF 312
>ref|XP_003360745.1| PREDICTED: protein transport protein Sec61 subunit alpha isoform
1-like, partial [Sus scrofa].
Length = 451
Score = 556 bits (1432), Expect = e-159
Identities = 284/287 (98%), Positives = 285/287 (99%)
Frame = +1
Query: 223 IQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIV 402
IQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIV
Sbjct: 1 IQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIV 60
Query: 403 TSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGA 582
TSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGA
Sbjct: 61 TSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGA 120
Query: 583 GICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGR 762
GICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGR
Sbjct: 121 GICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGR 180
Query: 763 GMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDL 942
GMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDL
Sbjct: 181 GMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDL 240
Query: 943 PIKSARYRGQYHTYPIKLFYNSKIPIILQSALVSNLYVISQMLSARF 1083
PIKSARYRGQY+TYPIKLFY S IPIILQSALVSNLYVISQMLSARF
Sbjct: 241 PIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARF 287
>ref|XP_003361138.1| PREDICTED: protein transport protein Sec61 subunit alpha isoform
2-like [Sus scrofa].
Length = 484
Score = 533 bits (1373), Expect = e-152
Identities = 276/310 (89%), Positives = 283/310 (91%)
Frame = +1
Query: 154 IKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPF 333
+KFLEVIKPFC +LPEIQKPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSADPF
Sbjct: 22 VKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPF 81
Query: 334 YWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMI 513
YWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMI
Sbjct: 82 YWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMI 141
Query: 514 ITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLF 693
ITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGISLF
Sbjct: 142 ITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLF 201
Query: 694 IATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNL 873
IATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLPN
Sbjct: 202 IATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPN- 260
Query: 874 MNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYHTYPIKLFYNSKIPIILQSALVSNLY 1053
FVFAVVIYFQGFRVD YPIKLFY S IPIILQSALVSNLY
Sbjct: 261 -----XXFVFAVVIYFQGFRVD-----XXXXXXXXXYPIKLFYTSNIPIILQSALVSNLY 310
Query: 1054 VISQMLSARF 1083
VISQMLSARF
Sbjct: 311 VISQMLSARF 320
>ref|XP_001924516.2| PREDICTED: protein transport protein Sec61 subunit alpha isoform 1,
partial [Sus scrofa].
Length = 402
Score = 456 bits (1172), Expect = e-128
Identities = 235/238 (98%), Positives = 236/238 (99%)
Frame = +1
Query: 370 TLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMT 549
TLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMT
Sbjct: 1 TLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMT 60
Query: 550 GMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWK 729
GMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWK
Sbjct: 61 GMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWK 120
Query: 730 AFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAV 909
AFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAV
Sbjct: 121 AFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAV 180
Query: 910 VIYFQGFRVDLPIKSARYRGQYHTYPIKLFYNSKIPIILQSALVSNLYVISQMLSARF 1083
VIYFQGFRVDLPIKSARYRGQY+TYPIKLFY S IPIILQSALVSNLYVISQMLSARF
Sbjct: 181 VIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARF 238
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,186,395
Number of extensions: 673575
Number of successful extensions: 2779
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2763
Number of HSP's successfully gapped: 4
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012471
(1084 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058602.1| protein transport protein Sec61 subunit alpha i... 605 e-173
Alignment gi|NP_067280.1| protein transport protein Sec61 subunit alpha i... 588 e-168
>ref|NP_058602.1| protein transport protein Sec61 subunit alpha isoform 1 [Mus
musculus].
Length = 476
Score = 605 bits (1560), Expect = e-173
Identities = 309/312 (99%), Positives = 310/312 (99%)
Frame = +1
Query: 148 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 327
MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 328 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 507
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 508 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 687
MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 688 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 867
LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 868 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYHTYPIKLFYNSKIPIILQSALVSN 1047
NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQY+TYPIKLFY S IPIILQSALVSN
Sbjct: 241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 300
Query: 1048 LYVISQMLSARF 1083
LYVISQMLSARF
Sbjct: 301 LYVISQMLSARF 312
>ref|NP_067280.1| protein transport protein Sec61 subunit alpha isoform 2 [Mus
musculus].
Length = 476
Score = 588 bits (1517), Expect = e-168
Identities = 296/312 (94%), Positives = 304/312 (97%)
Frame = +1
Query: 148 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 327
M IKFLEVIKPFC +LPEIQKPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 328 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 507
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 508 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 687
MIITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 688 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 867
LFIATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 868 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYHTYPIKLFYNSKIPIILQSALVSN 1047
NLMNLIAT+FVFAVVIYFQGFRVDLPIKSARYRGQY +YPIKLFY S IPIILQSALVSN
Sbjct: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
Query: 1048 LYVISQMLSARF 1083
LYVISQMLS RF
Sbjct: 301 LYVISQMLSVRF 312
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,680,129
Number of extensions: 891691
Number of successful extensions: 3553
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3515
Number of HSP's successfully gapped: 2
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012471
(1084 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_037468.1| protein transport protein Sec61 subunit alpha i... 605 e-173
Alignment gi|NP_060614.2| protein transport protein Sec61 subunit alpha i... 588 e-168
Alignment gi|NP_001136099.1| protein transport protein Sec61 subunit alph... 588 e-168
Alignment gi|NP_001136100.1| protein transport protein Sec61 subunit alph... 531 e-151
>ref|NP_037468.1| protein transport protein Sec61 subunit alpha isoform 1 [Homo
sapiens].
Length = 476
Score = 605 bits (1560), Expect = e-173
Identities = 309/312 (99%), Positives = 310/312 (99%)
Frame = +1
Query: 148 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 327
MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 328 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 507
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 508 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 687
MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 688 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 867
LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 868 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYHTYPIKLFYNSKIPIILQSALVSN 1047
NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQY+TYPIKLFY S IPIILQSALVSN
Sbjct: 241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 300
Query: 1048 LYVISQMLSARF 1083
LYVISQMLSARF
Sbjct: 301 LYVISQMLSARF 312
>ref|NP_060614.2| protein transport protein Sec61 subunit alpha isoform 2 isoform a
[Homo sapiens].
Length = 476
Score = 588 bits (1517), Expect = e-168
Identities = 296/312 (94%), Positives = 304/312 (97%)
Frame = +1
Query: 148 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 327
M IKFLEVIKPFC +LPEIQKPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 328 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 507
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 508 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 687
MIITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 688 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 867
LFIATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 868 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYHTYPIKLFYNSKIPIILQSALVSN 1047
NLMNLIAT+FVFAVVIYFQGFRVDLPIKSARYRGQY +YPIKLFY S IPIILQSALVSN
Sbjct: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
Query: 1048 LYVISQMLSARF 1083
LYVISQMLS RF
Sbjct: 301 LYVISQMLSVRF 312
>ref|NP_001136099.1| protein transport protein Sec61 subunit alpha isoform 2 isoform c
[Homo sapiens].
Length = 437
Score = 588 bits (1517), Expect = e-168
Identities = 296/312 (94%), Positives = 304/312 (97%)
Frame = +1
Query: 148 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 327
M IKFLEVIKPFC +LPEIQKPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 328 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 507
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 508 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 687
MIITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 688 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 867
LFIATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 868 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYHTYPIKLFYNSKIPIILQSALVSN 1047
NLMNLIAT+FVFAVVIYFQGFRVDLPIKSARYRGQY +YPIKLFY S IPIILQSALVSN
Sbjct: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
Query: 1048 LYVISQMLSARF 1083
LYVISQMLS RF
Sbjct: 301 LYVISQMLSVRF 312
>ref|NP_001136100.1| protein transport protein Sec61 subunit alpha isoform 2 isoform b
[Homo sapiens].
Length = 454
Score = 531 bits (1369), Expect = e-151
Identities = 275/312 (88%), Positives = 282/312 (90%)
Frame = +1
Query: 148 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 327
M IKFLEVIKPFC +LPEIQKPERKI PLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKI----------------------PLFGIMSSDSAD 38
Query: 328 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 507
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 39 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 98
Query: 508 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 687
MIITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 99 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 158
Query: 688 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 867
LFIATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 159 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 218
Query: 868 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYHTYPIKLFYNSKIPIILQSALVSN 1047
NLMNLIAT+FVFAVVIYFQGFRVDLPIKSARYRGQY +YPIKLFY S IPIILQSALVSN
Sbjct: 219 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 278
Query: 1048 LYVISQMLSARF 1083
LYVISQMLS RF
Sbjct: 279 LYVISQMLSVRF 290
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,600,133
Number of extensions: 1066309
Number of successful extensions: 4350
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4317
Number of HSP's successfully gapped: 4
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012471
(1084 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118478.1| Sus scrofa unplaced genomic scaffold ChrUScaf556 325 3e-86
Sscrofa_Chr13 325 3e-86
Sscrofa_Chr10 178 4e-42
gb|GL893598.2| Sus scrofa unplaced genomic scaffold ChrUScaf1483 135 6e-29
>gb|JH118478.1| Sus scrofa unplaced genomic scaffold ChrUScaf556
Length = 230758
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 762 aggaatggagtttgaaggtgccatcattgccctgttccacctgctggccacacgcacgga 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6652 aggaatggagtttgaaggtgccatcattgccctgttccacctgctggccacacgcacgga 6711
Query: 822 caaggtccgggcccttcgagaggccttctaccgccagaatctccccaacctcatgaatct 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6712 caaggtccgggcccttcgagaggccttctaccgccagaatctccccaacctcatgaatct 6771
Query: 882 gattgccaccatctttgtctttgccgtggtcatctacttccagg 925
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6772 gattgccaccatctttgtctttgccgtggtcatctacttccagg 6815
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 606 acagctctttgttgctggcctgattgttctgcttctggatgaacttctgcaaaaggggta 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5094 acagctctttgttgctggcctgattgttctgcttctggatgaacttctgcaaaaggggta 5153
Query: 666 tggcctgggctctgggatctccctcttcattgccacaaacatctgcgagaccatcgtgtg 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5154 tggcctgggctctgggatctccctcttcattgccacaaacatctgcgagaccatcgtgtg 5213
Query: 726 gaaggctttcagccctaccactgtcaacactggccgagg 764
|||||||||||||||||||||||||||||||||||||||
Sbjct: 5214 gaaggctttcagccctaccactgtcaacactggccgagg 5252
Score = 283 bits (143), Expect = 1e-73
Identities = 158/163 (96%)
Strand = Plus / Plus
Query: 922 cagggcttccgcgtggacctgccgatcaagtcagcccgttaccgaggccagtaccacacc 981
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8139 cagggcttccgcgtggacctgccgatcaagtcagcccgttaccgaggccagtacaacacc 8198
Query: 982 taccctatcaagctcttctataactccaaaatccccatcatcctgcagtcggccctggtg 1041
|||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||
Sbjct: 8199 taccctatcaagctcttctatacctccaacatccccatcatcctgcagtctgccctggtg 8258
Query: 1042 tccaacctgtatgtcatctcccaaatgctgtccgcccgcttca 1084
||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 8259 tccaacctgtatgtcatctcccagatgctgtccgcccgcttca 8301
Score = 258 bits (130), Expect = 6e-66
Identities = 133/134 (99%)
Strand = Plus / Plus
Query: 366 aggcacattgatggagctcggtatctctcccattgtcacttctggcctcatcatgcagct 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2235 aggcacattgatggagctcggtatctctcccattgtcacttctggcctcatcatgcagct 2294
Query: 426 cttggctggcgccaaaataattgaagttggtgacaccccaaaagaccgagccctcttcaa 485
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2295 cttggctggcgccaaaataattgaagtaggtgacaccccaaaagaccgagccctcttcaa 2354
Query: 486 cggagctcagaagt 499
||||||||||||||
Sbjct: 2355 cggagctcagaagt 2368
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 500 tatttggcatgatcatcaccattggccagtccatcgtgtatgtgatgacggggatgtatg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4719 tatttggcatgatcatcaccattggccagtccatcgtgtatgtgatgacggggatgtatg 4778
Query: 560 gagacccttctgaaatgggggctgggatctgcctgttgatcaccatacag 609
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4779 gagacccttctgaaatgggggctgggatctgcctgttgatcaccatacag 4828
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 285 ccagatccccctgtttggcatcatgtcttcagactcagccgaccctttctattggatgag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 ccagatccccctgtttggcatcatgtcttcagactcagccgaccctttctattggatgag 1135
Query: 345 agtgatccttgcctcaaacagagg 368
||||||||||||||||||||||||
Sbjct: 1136 agtgatccttgcctcaaacagagg 1159
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 221 agattcagtttaaggagaaagtgctatggactgccatcaccctcttcatcttcttggtct 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 agattcagtttaaggagaaagtgctatggactgccatcaccctcttcatcttcttggtct 980
Query: 281 gctgccag 288
||||||||
Sbjct: 981 gctgccag 988
>Sscrofa_Chr13
|| Length = 218635234
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 762 aggaatggagtttgaaggtgccatcattgccctgttccacctgctggccacacgcacgga 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79742034 aggaatggagtttgaaggtgccatcattgccctgttccacctgctggccacacgcacgga 79741975
Query: 822 caaggtccgggcccttcgagaggccttctaccgccagaatctccccaacctcatgaatct 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79741974 caaggtccgggcccttcgagaggccttctaccgccagaatctccccaacctcatgaatct 79741915
Query: 882 gattgccaccatctttgtctttgccgtggtcatctacttccagg 925
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79741914 gattgccaccatctttgtctttgccgtggtcatctacttccagg 79741871
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 606 acagctctttgttgctggcctgattgttctgcttctggatgaacttctgcaaaaggggta 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79743592 acagctctttgttgctggcctgattgttctgcttctggatgaacttctgcaaaaggggta 79743533
Query: 666 tggcctgggctctgggatctccctcttcattgccacaaacatctgcgagaccatcgtgtg 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79743532 tggcctgggctctgggatctccctcttcattgccacaaacatctgcgagaccatcgtgtg 79743473
Query: 726 gaaggctttcagccctaccactgtcaacactggccgagg 764
|||||||||||||||||||||||||||||||||||||||
Sbjct: 79743472 gaaggctttcagccctaccactgtcaacactggccgagg 79743434
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 1 gagcccggccgcggcgctatcactgacgtgtctctcggcgaggcgcggcgccccggacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79751250 gagcccggccgcggcgctatcactgacgtgtctctcggcgaggcgcggcgccccggacca 79751191
Query: 61 ggccgggcgggcagtagagctgcactcgcagcgcagcggagccggagcgcgacccggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79751190 ggccgggcgggcagtagagctgcactcgcagcgcagcggagccggagcgcgacccggagc 79751131
Query: 121 ccgacctggagcccagcagccgccgccatggcga 154
||||||||||||||||||||||||||||||||||
Sbjct: 79751130 ccgacctggagcccagcagccgccgccatggcga 79751097
Score = 283 bits (143), Expect = 1e-73
Identities = 158/163 (96%)
Strand = Plus / Minus
Query: 922 cagggcttccgcgtggacctgccgatcaagtcagcccgttaccgaggccagtaccacacc 981
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 79740589 cagggcttccgcgtggacctgccgatcaagtcagcccgttaccgaggccagtacaacacc 79740530
Query: 982 taccctatcaagctcttctataactccaaaatccccatcatcctgcagtcggccctggtg 1041
|||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||
Sbjct: 79740529 taccctatcaagctcttctatacctccaacatccccatcatcctgcagtctgccctggtg 79740470
Query: 1042 tccaacctgtatgtcatctcccaaatgctgtccgcccgcttca 1084
||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 79740469 tccaacctgtatgtcatctcccagatgctgtccgcccgcttca 79740427
Score = 258 bits (130), Expect = 6e-66
Identities = 133/134 (99%)
Strand = Plus / Minus
Query: 366 aggcacattgatggagctcggtatctctcccattgtcacttctggcctcatcatgcagct 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79746352 aggcacattgatggagctcggtatctctcccattgtcacttctggcctcatcatgcagct 79746293
Query: 426 cttggctggcgccaaaataattgaagttggtgacaccccaaaagaccgagccctcttcaa 485
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 79746292 cttggctggcgccaaaataattgaagtaggtgacaccccaaaagaccgagccctcttcaa 79746233
Query: 486 cggagctcagaagt 499
||||||||||||||
Sbjct: 79746232 cggagctcagaagt 79746219
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 500 tatttggcatgatcatcaccattggccagtccatcgtgtatgtgatgacggggatgtatg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79743967 tatttggcatgatcatcaccattggccagtccatcgtgtatgtgatgacggggatgtatg 79743908
Query: 560 gagacccttctgaaatgggggctgggatctgcctgttgatcaccatacag 609
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79743907 gagacccttctgaaatgggggctgggatctgcctgttgatcaccatacag 79743858
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 285 ccagatccccctgtttggcatcatgtcttcagactcagccgaccctttctattggatgag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79747660 ccagatccccctgtttggcatcatgtcttcagactcagccgaccctttctattggatgag 79747601
Query: 345 agtgatccttgcctcaaacagagg 368
||||||||||||||||||||||||
Sbjct: 79747600 agtgatccttgcctcaaacagagg 79747577
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 221 agattcagtttaaggagaaagtgctatggactgccatcaccctcttcatcttcttggtct 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79747815 agattcagtttaaggagaaagtgctatggactgccatcaccctcttcatcttcttggtct 79747756
Query: 281 gctgccag 288
||||||||
Sbjct: 79747755 gctgccag 79747748
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 155 tcaagtttctggaggtcatcaagcccttctgtgtcatcctgccagaaattcagaagccgg 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79750928 tcaagtttctggaggtcatcaagcccttctgtgtcatcctgccagaaattcagaagccgg 79750869
Query: 215 agcggaag 222
||||||||
Sbjct: 79750868 agcggaag 79750861
>Sscrofa_Chr10
|| Length = 79102373
Score = 178 bits (90), Expect = 4e-42
Identities = 138/154 (89%)
Strand = Plus / Minus
Query: 922 cagggcttccgcgtggacctgccgatcaagtcagcccgttaccgaggccagtaccacacc 981
||||||||||| ||||||||||| |||||||| || || |||||||| |||||| || |
Sbjct: 65585692 cagggcttccgtgtggacctgcccatcaagtcggcgcggtaccgagggcagtacagcagc 65585633
Query: 982 taccctatcaagctcttctataactccaaaatccccatcatcctgcagtcggccctggtg 1041
||||| |||||||||||||| | ||||| |||||||||||||||||||||||||| |||
Sbjct: 65585632 taccccatcaagctcttctacacgtccaacatccccatcatcctgcagtcggccctcgtg 65585573
Query: 1042 tccaacctgtatgtcatctcccaaatgctgtccg 1075
||||||||||||||||||||||| ||||||||||
Sbjct: 65585572 tccaacctgtatgtcatctcccagatgctgtccg 65585539
Score = 95.6 bits (48), Expect = 5e-17
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 502 tttggcatgatcatcaccattggccagtccatcgtgtatgtgatgacggggatgtatgga 561
||||| |||||||||||||| |||||| ||||||||||||| |||||||| ||||| ||
Sbjct: 65591822 tttgggatgatcatcaccatcggccaggccatcgtgtatgtcatgacgggcatgtacggg 65591763
Query: 562 gacccttctgaaatgggggctgggatctgcct 593
|||||| |||| ||||| || |||||||||||
Sbjct: 65591762 gaccctgctgagatgggcgccgggatctgcct 65591731
Score = 79.8 bits (40), Expect = 3e-12
Identities = 124/152 (81%)
Strand = Plus / Minus
Query: 613 tttgttgctggcctgattgttctgcttctggatgaacttctgcaaaaggggtatggcctg 672
||||||||||| ||||||| ||||| | ||||| || || || ||||| || ||| ||
Sbjct: 65587258 tttgttgctggtttgattgtgctgctgttagatgagctgctacagaagggttacggcttg 65587199
Query: 673 ggctctgggatctccctcttcattgccacaaacatctgcgagaccatcgtgtggaaggct 732
|| ||||| || |||||||| |||||||| |||||||| |||||||| || ||||||||
Sbjct: 65587198 gggtctggtatttccctctttattgccaccaacatctgtgagaccattgtctggaaggcc 65587139
Query: 733 ttcagccctaccactgtcaacactggccgagg 764
|| || || ||||| | ||||||||||||||
Sbjct: 65587138 tttagtcccaccaccattaacactggccgagg 65587107
Score = 60.0 bits (30), Expect = 3e-06
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 376 atggagctcggtatctctcccattgtcacttctggcctcatcatgcagctcttggctggc 435
|||||| | |||||||| || ||||| || ||||| | || |||||| | || |||||
Sbjct: 65592047 atggagttgggtatctccccaattgtaacatctggtttgattatgcagttgttagctgga 65591988
Query: 436 gccaaaataattgaagttggtgacaccccaaaagaccgagccctcttcaacggagctcag 495
|||||||| ||||||||||| || || || ||||| ||||||| ||||||||||| |||
Sbjct: 65591987 gccaaaatcattgaagttggagatacacccaaagatagagccctattcaacggagcccag 65591928
Query: 496 aa 497
||
Sbjct: 65591927 aa 65591926
>gb|GL893598.2| Sus scrofa unplaced genomic scaffold ChrUScaf1483
Length = 101682
Score = 135 bits (68), Expect = 6e-29
Identities = 89/96 (92%)
Strand = Plus / Plus
Query: 981 ctaccctatcaagctcttctataactccaaaatccccatcatcctgcagtcggccctggt 1040
|||||| |||||||||||||| | ||||| |||||||||||||||||||||||||| ||
Sbjct: 19554 ctaccccatcaagctcttctacacgtccaacatccccatcatcctgcagtcggccctcgt 19613
Query: 1041 gtccaacctgtatgtcatctcccaaatgctgtccgc 1076
|||||||||||||||||||||||| |||||||||||
Sbjct: 19614 gtccaacctgtatgtcatctcccagatgctgtccgc 19649
Score = 95.6 bits (48), Expect = 5e-17
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 502 tttggcatgatcatcaccattggccagtccatcgtgtatgtgatgacggggatgtatgga 561
||||| |||||||||||||| |||||| ||||||||||||| |||||||| ||||| ||
Sbjct: 13620 tttgggatgatcatcaccatcggccaggccatcgtgtatgtcatgacgggcatgtacggg 13679
Query: 562 gacccttctgaaatgggggctgggatctgcct 593
|||||| |||| ||||| || |||||||||||
Sbjct: 13680 gaccctgctgagatgggcgccgggatctgcct 13711
Score = 79.8 bits (40), Expect = 3e-12
Identities = 124/152 (81%)
Strand = Plus / Plus
Query: 613 tttgttgctggcctgattgttctgcttctggatgaacttctgcaaaaggggtatggcctg 672
||||||||||| ||||||| ||||| | ||||| || || || ||||| || ||| ||
Sbjct: 17752 tttgttgctggtttgattgtgctgctgttagatgagctgctacagaagggttacggcttg 17811
Query: 673 ggctctgggatctccctcttcattgccacaaacatctgcgagaccatcgtgtggaaggct 732
|| ||||| || |||||||| |||||||| |||||||| |||||||| || ||||||||
Sbjct: 17812 gggtctggtatttccctctttattgccaccaacatctgtgagaccattgtctggaaggcc 17871
Query: 733 ttcagccctaccactgtcaacactggccgagg 764
|| || || ||||| | ||||||||||||||
Sbjct: 17872 tttagtcccaccaccattaacactggccgagg 17903
Score = 60.0 bits (30), Expect = 3e-06
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 376 atggagctcggtatctctcccattgtcacttctggcctcatcatgcagctcttggctggc 435
|||||| | |||||||| || ||||| || ||||| | || |||||| | || |||||
Sbjct: 13395 atggagttgggtatctccccaattgtaacatctggtttgattatgcagttgttagctgga 13454
Query: 436 gccaaaataattgaagttggtgacaccccaaaagaccgagccctcttcaacggagctcag 495
|||||||| ||||||||||| || || || ||||| ||||||| ||||||||||| |||
Sbjct: 13455 gccaaaatcattgaagttggagatacacccaaagatagagccctattcaacggagcccag 13514
Query: 496 aa 497
||
Sbjct: 13515 aa 13516
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,918,608
Number of extensions: 220
Number of successful extensions: 220
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 24
Length of query: 1084
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1063
Effective length of database: 2,808,413,156
Effective search space: 2985343184828
Effective search space used: 2985343184828
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)