Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012472
(3205 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003315.1| protein transport protein Sec61 subunit alph... 932 0.0
Alignment gi|XP_535191.2| PREDICTED: similar to Sec61, alpha subunit 2 [C... 891 0.0
>ref|NP_001003315.1| protein transport protein Sec61 subunit alpha isoform 1 [Canis lupus
familiaris].
Length = 476
Score = 932 bits (2410), Expect = 0.0
Identities = 475/476 (99%), Positives = 476/476 (100%)
Frame = +2
Query: 122 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 301
MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 302 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 481
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 482 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 661
MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 662 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 841
LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 842 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 1021
NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN
Sbjct: 241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 300
Query: 1022 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 1201
LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLC+YLSPPESFGSVLEDPVH
Sbjct: 301 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVH 360
Query: 1202 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 1381
AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA
Sbjct: 361 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 420
Query: 1382 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 1549
AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF
Sbjct: 421 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 476
>ref|XP_535191.2| PREDICTED: similar to Sec61, alpha subunit 2 [Canis familiaris].
Length = 551
Score = 891 bits (2302), Expect = 0.0
Identities = 443/474 (93%), Positives = 461/474 (97%)
Frame = +2
Query: 128 IKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPF 307
+KFLEVIKPFC +LPEIQKPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSADPF
Sbjct: 78 VKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPF 137
Query: 308 YWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMI 487
YWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMI
Sbjct: 138 YWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMI 197
Query: 488 ITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLF 667
ITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGISLF
Sbjct: 198 ITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLF 257
Query: 668 IATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNL 847
IATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLPNL
Sbjct: 258 IATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNL 317
Query: 848 MNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLY 1027
MNLIAT+FVFAVVIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSALVSNLY
Sbjct: 318 MNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLY 377
Query: 1028 VISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAV 1207
VISQMLS RFSGN LV+LLG W+D S GGPAR+YPVGGLCYYLSPPES G++ EDPVH V
Sbjct: 378 VISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVV 437
Query: 1208 VYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAA 1387
VYI+FMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHR+TSMVHELNRYIPTAAA
Sbjct: 438 VYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAA 497
Query: 1388 FGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 1549
FGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+EVG MGAL F
Sbjct: 498 FGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 551
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 135,358,189
Number of extensions: 3942542
Number of successful extensions: 15229
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 15165
Number of HSP's successfully gapped: 2
Length of query: 1068
Length of database: 18,874,504
Length adjustment: 113
Effective length of query: 955
Effective length of database: 15,107,536
Effective search space: 14427696880
Effective search space used: 14427696880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012472
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012472
(3205 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035594.1| protein transport protein Sec61 subunit alph... 931 0.0
Alignment gi|NP_001039989.1| protein transport protein Sec61 subunit alph... 893 0.0
>ref|NP_001035594.1| protein transport protein Sec61 subunit alpha isoform 1 [Bos taurus].
Length = 476
Score = 931 bits (2405), Expect = 0.0
Identities = 473/476 (99%), Positives = 474/476 (99%)
Frame = +2
Query: 122 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 301
M IKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 302 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 481
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 482 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 661
M ITIGQSIVYVMTGMYGDPSEMGAG+CLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MTITIGQSIVYVMTGMYGDPSEMGAGVCLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 662 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 841
LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 842 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 1021
NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN
Sbjct: 241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 300
Query: 1022 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 1201
LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH
Sbjct: 301 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 360
Query: 1202 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 1381
AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA
Sbjct: 361 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 420
Query: 1382 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 1549
AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF
Sbjct: 421 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 476
>ref|NP_001039989.1| protein transport protein Sec61 subunit alpha isoform 2 [Bos taurus].
Length = 476
Score = 893 bits (2308), Expect = 0.0
Identities = 445/476 (93%), Positives = 462/476 (97%)
Frame = +2
Query: 122 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 301
M IKFLEVIKPFC +LPEIQKPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 302 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 481
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 482 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 661
MIITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 662 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 841
LFIATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 842 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 1021
NLMNLIAT+FVFAVVIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSALVSN
Sbjct: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
Query: 1022 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 1201
LYVISQMLS RFSGN LV+LLG W+D S GGPAR+YPVGGLCYYLSPPES G++ EDPVH
Sbjct: 301 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 360
Query: 1202 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 1381
VVYI+FMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHR+TSMVHELNRYIPTA
Sbjct: 361 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTA 420
Query: 1382 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 1549
AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+EVG MGAL F
Sbjct: 421 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 476
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 130,305,455
Number of extensions: 3856820
Number of successful extensions: 14760
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 14727
Number of HSP's successfully gapped: 2
Length of query: 1068
Length of database: 17,681,374
Length adjustment: 113
Effective length of query: 955
Effective length of database: 13,942,430
Effective search space: 13315020650
Effective search space used: 13315020650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012472
(3205 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130856.1| PREDICTED: protein transport protein Sec61 s... 893 0.0
Alignment gi|XP_003360745.1| PREDICTED: protein transport protein Sec61 s... 885 0.0
Alignment gi|XP_003361138.1| PREDICTED: protein transport protein Sec61 s... 837 0.0
Alignment gi|XP_001924516.2| PREDICTED: protein transport protein Sec61 s... 785 0.0
>ref|XP_003130856.1| PREDICTED: protein transport protein Sec61 subunit alpha isoform
2-like [Sus scrofa].
Length = 476
Score = 893 bits (2308), Expect = 0.0
Identities = 445/476 (93%), Positives = 462/476 (97%)
Frame = +2
Query: 122 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 301
M IKFLEVIKPFC +LPEIQKPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 302 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 481
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 482 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 661
MIITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 662 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 841
LFIATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 842 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 1021
NLMNLIAT+FVFAVVIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSALVSN
Sbjct: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
Query: 1022 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 1201
LYVISQMLS RFSGN LV+LLG W+D S GGPAR+YPVGGLCYYLSPPES G++ EDPVH
Sbjct: 301 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 360
Query: 1202 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 1381
VVYI+FMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHR+TSMVHELNRYIPTA
Sbjct: 361 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTA 420
Query: 1382 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 1549
AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+EVG MGAL F
Sbjct: 421 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 476
>ref|XP_003360745.1| PREDICTED: protein transport protein Sec61 subunit alpha isoform
1-like, partial [Sus scrofa].
Length = 451
Score = 885 bits (2287), Expect = 0.0
Identities = 451/451 (100%), Positives = 451/451 (100%)
Frame = +2
Query: 197 IQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIV 376
IQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIV
Sbjct: 1 IQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIV 60
Query: 377 TSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGA 556
TSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGA
Sbjct: 61 TSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGA 120
Query: 557 GICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGR 736
GICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGR
Sbjct: 121 GICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGR 180
Query: 737 GMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDL 916
GMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDL
Sbjct: 181 GMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDL 240
Query: 917 PIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWS 1096
PIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWS
Sbjct: 241 PIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWS 300
Query: 1097 DTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGS 1276
DTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGS
Sbjct: 301 DTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGS 360
Query: 1277 SAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGT 1456
SAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGT
Sbjct: 361 SAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGT 420
Query: 1457 GILLAVTIIYQYFEIFVKEQSEVGSMGALLF 1549
GILLAVTIIYQYFEIFVKEQSEVGSMGALLF
Sbjct: 421 GILLAVTIIYQYFEIFVKEQSEVGSMGALLF 451
>ref|XP_003361138.1| PREDICTED: protein transport protein Sec61 subunit alpha isoform
2-like [Sus scrofa].
Length = 484
Score = 837 bits (2162), Expect = 0.0
Identities = 425/474 (89%), Positives = 440/474 (92%)
Frame = +2
Query: 128 IKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPF 307
+KFLEVIKPFC +LPEIQKPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSADPF
Sbjct: 22 VKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPF 81
Query: 308 YWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMI 487
YWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMI
Sbjct: 82 YWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMI 141
Query: 488 ITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLF 667
ITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGISLF
Sbjct: 142 ITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLF 201
Query: 668 IATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNL 847
IATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLPN
Sbjct: 202 IATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPN- 260
Query: 848 MNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLY 1027
FVFAVVIYFQGFRVD YPIKLFYTSNIPIILQSALVSNLY
Sbjct: 261 -----XXFVFAVVIYFQGFRVD-----XXXXXXXXXYPIKLFYTSNIPIILQSALVSNLY 310
Query: 1028 VISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAV 1207
VISQMLSARFSGN LV+LLG W+D S GGPAR+YPVGGLCYYLSPPES G++ EDPVH V
Sbjct: 311 VISQMLSARFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVV 370
Query: 1208 VYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAA 1387
VYI+FMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHR+TSMVHELNRYIPTAAA
Sbjct: 371 VYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAA 430
Query: 1388 FGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 1549
FGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+EVG MGAL F
Sbjct: 431 FGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 484
>ref|XP_001924516.2| PREDICTED: protein transport protein Sec61 subunit alpha isoform 1,
partial [Sus scrofa].
Length = 402
Score = 785 bits (2027), Expect = 0.0
Identities = 402/402 (100%), Positives = 402/402 (100%)
Frame = +2
Query: 344 TLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMT 523
TLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMT
Sbjct: 1 TLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMT 60
Query: 524 GMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWK 703
GMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWK
Sbjct: 61 GMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWK 120
Query: 704 AFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAV 883
AFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAV
Sbjct: 121 AFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAV 180
Query: 884 VIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSG 1063
VIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSG
Sbjct: 181 VIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSG 240
Query: 1064 NLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAF 1243
NLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAF
Sbjct: 241 NLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAF 300
Query: 1244 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVL 1423
FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVL
Sbjct: 301 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVL 360
Query: 1424 ADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 1549
ADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF
Sbjct: 361 ADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 402
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 84,001,702
Number of extensions: 2488314
Number of successful extensions: 9477
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9458
Number of HSP's successfully gapped: 4
Length of query: 1068
Length of database: 11,343,932
Length adjustment: 109
Effective length of query: 959
Effective length of database: 8,630,159
Effective search space: 8276322481
Effective search space used: 8276322481
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012472
(3205 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058602.1| protein transport protein Sec61 subunit alpha i... 934 0.0
Alignment gi|NP_067280.1| protein transport protein Sec61 subunit alpha i... 893 0.0
>ref|NP_058602.1| protein transport protein Sec61 subunit alpha isoform 1 [Mus
musculus].
Length = 476
Score = 934 bits (2415), Expect = 0.0
Identities = 476/476 (100%), Positives = 476/476 (100%)
Frame = +2
Query: 122 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 301
MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 302 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 481
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 482 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 661
MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 662 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 841
LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 842 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 1021
NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN
Sbjct: 241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 300
Query: 1022 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 1201
LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH
Sbjct: 301 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 360
Query: 1202 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 1381
AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA
Sbjct: 361 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 420
Query: 1382 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 1549
AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF
Sbjct: 421 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 476
>ref|NP_067280.1| protein transport protein Sec61 subunit alpha isoform 2 [Mus
musculus].
Length = 476
Score = 893 bits (2308), Expect = 0.0
Identities = 445/476 (93%), Positives = 462/476 (97%)
Frame = +2
Query: 122 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 301
M IKFLEVIKPFC +LPEIQKPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 302 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 481
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 482 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 661
MIITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 662 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 841
LFIATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 842 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 1021
NLMNLIAT+FVFAVVIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSALVSN
Sbjct: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
Query: 1022 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 1201
LYVISQMLS RFSGN LV+LLG W+D S GGPAR+YPVGGLCYYLSPPES G++ EDPVH
Sbjct: 301 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 360
Query: 1202 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 1381
VVYI+FMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHR+TSMVHELNRYIPTA
Sbjct: 361 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTA 420
Query: 1382 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 1549
AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+EVG MGAL F
Sbjct: 421 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 476
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 113,025,372
Number of extensions: 3282833
Number of successful extensions: 11949
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11891
Number of HSP's successfully gapped: 2
Length of query: 1068
Length of database: 15,617,559
Length adjustment: 112
Effective length of query: 956
Effective length of database: 12,253,527
Effective search space: 11714371812
Effective search space used: 11714371812
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012472
(3205 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_037468.1| protein transport protein Sec61 subunit alpha i... 934 0.0
Alignment gi|NP_060614.2| protein transport protein Sec61 subunit alpha i... 893 0.0
Alignment gi|NP_001136100.1| protein transport protein Sec61 subunit alph... 836 0.0
Alignment gi|NP_001136099.1| protein transport protein Sec61 subunit alph... 781 0.0
>ref|NP_037468.1| protein transport protein Sec61 subunit alpha isoform 1 [Homo
sapiens].
Length = 476
Score = 934 bits (2415), Expect = 0.0
Identities = 476/476 (100%), Positives = 476/476 (100%)
Frame = +2
Query: 122 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 301
MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 302 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 481
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 482 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 661
MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 662 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 841
LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 842 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 1021
NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN
Sbjct: 241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 300
Query: 1022 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 1201
LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH
Sbjct: 301 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 360
Query: 1202 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 1381
AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA
Sbjct: 361 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 420
Query: 1382 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 1549
AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF
Sbjct: 421 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 476
>ref|NP_060614.2| protein transport protein Sec61 subunit alpha isoform 2 isoform a
[Homo sapiens].
Length = 476
Score = 893 bits (2308), Expect = 0.0
Identities = 445/476 (93%), Positives = 462/476 (97%)
Frame = +2
Query: 122 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 301
M IKFLEVIKPFC +LPEIQKPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 302 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 481
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 482 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 661
MIITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 662 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 841
LFIATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 842 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 1021
NLMNLIAT+FVFAVVIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSALVSN
Sbjct: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
Query: 1022 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 1201
LYVISQMLS RFSGN LV+LLG W+D S GGPAR+YPVGGLCYYLSPPES G++ EDPVH
Sbjct: 301 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 360
Query: 1202 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 1381
VVYI+FMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHR+TSMVHELNRYIPTA
Sbjct: 361 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTA 420
Query: 1382 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 1549
AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+EVG MGAL F
Sbjct: 421 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 476
>ref|NP_001136100.1| protein transport protein Sec61 subunit alpha isoform 2 isoform b
[Homo sapiens].
Length = 454
Score = 836 bits (2160), Expect = 0.0
Identities = 424/476 (89%), Positives = 440/476 (92%)
Frame = +2
Query: 122 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 301
M IKFLEVIKPFC +LPEIQKPERKI PLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKI----------------------PLFGIMSSDSAD 38
Query: 302 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 481
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 39 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 98
Query: 482 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 661
MIITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 99 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 158
Query: 662 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 841
LFIATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 159 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 218
Query: 842 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 1021
NLMNLIAT+FVFAVVIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSALVSN
Sbjct: 219 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 278
Query: 1022 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 1201
LYVISQMLS RFSGN LV+LLG W+D S GGPAR+YPVGGLCYYLSPPES G++ EDPVH
Sbjct: 279 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 338
Query: 1202 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 1381
VVYI+FMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHR+TSMVHELNRYIPTA
Sbjct: 339 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTA 398
Query: 1382 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 1549
AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+EVG MGAL F
Sbjct: 399 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 454
>ref|NP_001136099.1| protein transport protein Sec61 subunit alpha isoform 2 isoform c
[Homo sapiens].
Length = 437
Score = 781 bits (2018), Expect = 0.0
Identities = 387/415 (93%), Positives = 403/415 (97%)
Frame = +2
Query: 122 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 301
M IKFLEVIKPFC +LPEIQKPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 302 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 481
PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 482 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 661
MIITIGQ+IVYVMTGMYGDP+EMGAGICLLI IQLFVAGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 662 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 841
LFIATNICETIVWKAFSPTT+NTGRG EFEGA+IALFHLLATRTDKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 842 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 1021
NLMNLIAT+FVFAVVIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSALVSN
Sbjct: 241 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 300
Query: 1022 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 1201
LYVISQMLS RFSGN LV+LLG W+D S GGPAR+YPVGGLCYYLSPPES G++ EDPVH
Sbjct: 301 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 360
Query: 1202 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNR 1366
VVYI+FMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHR+TSMVHELNR
Sbjct: 361 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNR 415
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 133,219,398
Number of extensions: 3904977
Number of successful extensions: 14520
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 14471
Number of HSP's successfully gapped: 4
Length of query: 1068
Length of database: 18,297,164
Length adjustment: 113
Effective length of query: 955
Effective length of database: 14,572,232
Effective search space: 13916481560
Effective search space used: 13916481560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012472
(3205 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 3287 0.0
gb|JH118478.1| Sus scrofa unplaced genomic scaffold ChrUScaf556 2888 0.0
Sscrofa_Chr10 204 2e-49
gb|GL893598.2| Sus scrofa unplaced genomic scaffold ChrUScaf1483 159 1e-35
>Sscrofa_Chr13
|| Length = 218635234
Score = 3287 bits (1658), Expect = 0.0
Identities = 1800/1847 (97%), Gaps = 7/1847 (0%)
Strand = Plus / Minus
Query: 1365 ggtacatccccactgctgcggcctttggtgggctgtgcatcggggccctctccgtcctgg 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79737761 ggtacatccccactgctgcggcctttggtgggctgtgcatcggggccctctccgtcctgg 79737702
Query: 1425 ctgacttcctgggcgccatcgggtctggaactgggatcctgctcgcggttaccatcatct 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79737701 ctgacttcctgggcgccatcgggtctggaactgggatcctgctcgcggttaccatcatct 79737642
Query: 1485 accagtactttgagatctttgtaaaggagcagagcgaggttggcagcatgggggcccttc 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79737641 accagtactttgagatctttgtaaaggagcagagcgaggttggcagcatgggggcccttc 79737582
Query: 1545 tcttctgagctgtggctcctggaccaggcaggcagtgtgctctgcggtggctgaaaaggg 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79737581 tcttctgagctgtggctcctggaccaggcaggcagtgtgctctgcggtggctgaaaaggg 79737522
Query: 1605 aacaacgaagccacactgtgggtgcttctcttgagcgctgctgtggcagagacttgggtt 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79737521 aacaacgaagccacactgtgggtgcttctcttgagcgctgctgtggcagagacttgggtt 79737462
Query: 1665 tagtaacatgtttgaacttcatattctttcattccactttctaaagtgctcgaaattttc 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79737461 tagtaacatgtttgaacttcatattctttcattccactttctaaagtgctcgaaattttc 79737402
Query: 1725 caatttgaaattttgctttttactctggcactggcatcagaactgtagaagtgaggtctt 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79737401 caatttgaaattttgctttttactctggcactggcatcagaactgtagaagtgaggtctt 79737342
Query: 1785 aagctgccagtggtaggggtgctgagtgcctgtgcccaggtccatgtaacttttgtcgta 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79737341 aagctgccagtggtaggggtgctgagtgcctgtgcccaggtccatgtaacttttgtcgta 79737282
Query: 1845 accattgcaccttctcggcgctgtatgtgactgcagtggtctcagctgttccccttgaag 1904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79737281 accattgcaccttctcggcgctgtatgtgactgcagtggtctcagctgttccccttgaag 79737222
Query: 1905 ggactgtcttactggttagaagcacaaacattgttgaaatgtcccaccctgggtgcagga 1964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79737221 ggactgtcttactggttagaagcacaaacattgttgaaatgtcccaccctgggtgcagga 79737162
Query: 1965 gggcagacggctgggagcaggtcggttttctggtgtgtgtgggtcgctcgctggtgggtc 2024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79737161 gggcagacggctgggagcaggtcggttttctggtgtgtgtgggtcgctcgctggtgggtc 79737102
Query: 2025 cccttacaatcaggggcaggaacacctggcttaaaactgtttctctggaaaacacaattg 2084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79737101 cccttacaatcaggggcaggaacacctggcttaaaactgtttctctggaaaacacaattg 79737042
Query: 2085 ttttccctttttaaagtagttttttagggcagagcttcttccaaaagaaagggatgaatg 2144
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79737041 tcttccctttttaaagtagttttttagggcagagcttcttccaaaagaaagggatgaatg 79736982
Query: 2145 tccagaagacactcttggctcatctgcatgtttttctacttttgcctattggctattctc 2204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79736981 tccagaagacactcttggctcatctgcatgtttttctacttttgcctattggctattctc 79736922
Query: 2205 cttggctggcctggtcgcgctctgctgtctctgctttgctaagcctgtgtcctctgctgg 2264
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79736921 cttggctggcctggtcgggctctgctgtctctgctttgctaagcctgtgtcctctgctgg 79736862
Query: 2265 agccaggccgcaatgctgtagctttgcagagtcacacggccatcgtgcagaggaccccaa 2324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79736861 agccaggccgcaatgctgtagctttgcagagtcacacggccatcgtgcagaggaccccaa 79736802
Query: 2325 gtggtctgtgcagttcctctgctgtcactggctttgctcctatggtgtgtccccttccca 2384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79736801 gtggtctgtgcagttcctctgctgtcactggctttgctcctatggtgtgtccccttccca 79736742
Query: 2385 cctggccaaggggaagcaccatggccagcctcagatgctaccttctaggctcaggacttc 2444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79736741 cctggccaaggggaagcaccatggccagcctcagatgctaccttctaggctcaggacttc 79736682
Query: 2445 ccacttgtattttcggaatgtttttactgtgcttattaggaccaaatgcaagtgaagtaa 2504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 79736681 ccacttgtattttcggaatgtttttactgtgcttattaggaccaaatgcaagtgaaataa 79736622
Query: 2505 atgacaagacacctcggtctgtctgcatttcagcagaactgcccagcagagacggcacag 2564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79736621 atgacaagacacctcggtctgtctgcatttcagcagaactgcccagcagagacggcacag 79736562
Query: 2565 gcacaggctctagattcatggtgaaatcagtgtcagannnnnnnnnnnnnnnnnatgaga 2624
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 79736561 gcacaggctctagattcatggtgaaatcagtgtcaga-ttttttttttttttttatgaga 79736503
Query: 2625 ttctccaatgtttgctatnnnnnnnngactcacaattatgtataagttgacccagacctt 2684
|||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 79736502 ttctccaatgtttgctataaaaaaaagactcacaattatgtataagttgacccagacctt 79736443
Query: 2685 agggccccttggggaccagccacactcagcagcaggatggcagtcaggtgctacagcctg 2744
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 79736442 agggccccttggggaccagccacactcagcagcaggatggcagtcaggtgctgcagcctg 79736383
Query: 2745 agggcttctcaccagaggacaccccagttctaagttgggaaccccaggggccagtgcagt 2804
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 79736382 agggcttctcaccagaggacaccccagttctaagttgggaaccccaggggctagtgcagt 79736323
Query: 2805 cctgtgctgagatacctcaccagcagcgggcacacaatggccttcaaagcacagagccag 2864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79736322 cctgtgctgagatacctcaccagcagcgggcacacaatggccttcaaagcacagagccag 79736263
Query: 2865 cagaggtggtaaacttggcacccatctgagtccagagggcctgcaagaccttactggcca 2924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79736262 cagaggtggtaaacttggcacccatctgagtccagagggcctgcaagaccttactggcca 79736203
Query: 2925 tgccgcctgcctgggaaacagaccagccaacaagaagaggcttgcctgatgtcacctggc 2984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79736202 tgccgcctgcctgggaaacagaccagccaacaagaagaggcttgcctgatgtcacctggc 79736143
Query: 2985 aagtctgcaaagagccaggcaggcctgcggactggggcgtccaccataccatacgtggcc 3044
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79736142 aagtccgcagagagccaggcaggcctgcggactggggcgtccaccataccatacgtggcc 79736083
Query: 3045 ttgtccga-ccagtcccgagtggaga-ctgacatgaccccca-ccccactagtcctgctg 3101
|||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 79736082 ttgtccgacccagtcccgagtggagacctgacatgacccccacccccactagtcctgctg 79736023
Query: 3102 cagcctgaacactgtgcctcaaatt-ctgccccacagtca-tggctacngaccantgntg 3159
|||||||| ||||||| |||| ||| |||||||||||||| ||||||| || | || ||
Sbjct: 79736022 cagcctgaccactgtggctcagattcctgccccacagtcactggctacggagcggtggtg 79735963
Query: 3160 ggagtgagggctgatcctta-cctccagggactgtcactgtggacgc 3205
|||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 79735962 ggagtgagggctgatccttagcttccagggactgtcactgtggacgc 79735916
Score = 400 bits (202), Expect = e-108
Identities = 202/202 (100%)
Strand = Plus / Minus
Query: 896 cagggcttccgcgtggacctgccgatcaagtcagcccgttaccgaggccagtacaacacc 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79740589 cagggcttccgcgtggacctgccgatcaagtcagcccgttaccgaggccagtacaacacc 79740530
Query: 956 taccctatcaagctcttctatacctccaacatccccatcatcctgcagtctgccctggtg 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79740529 taccctatcaagctcttctatacctccaacatccccatcatcctgcagtctgccctggtg 79740470
Query: 1016 tccaacctgtatgtcatctcccagatgctgtccgcccgcttcagtggcaacctgctggtt 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79740469 tccaacctgtatgtcatctcccagatgctgtccgcccgcttcagtggcaacctgctggtt 79740410
Query: 1076 agcctgctgggcacctggtctg 1097
||||||||||||||||||||||
Sbjct: 79740409 agcctgctgggcacctggtctg 79740388
Score = 385 bits (194), Expect = e-103
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 1097 gacacttcttctggtggcccagcacgtgcttatcctgttggcggcctttgctattacctg 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79740104 gacacttcttctggtggcccagcacgtgcttatcctgttggcggcctttgctattacctg 79740045
Query: 1157 tcccctccagagtcttttggctctgtcttggaagaccccgtccacgccgtcgtgtacata 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79740044 tcccctccagagtcttttggctctgtcttggaagaccccgtccacgccgtcgtgtacata 79739985
Query: 1217 gtgtttatgctgggctcctgtgccttcttctccaaaacctggattgaggtctcaggctcc 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79739984 gtgtttatgctgggctcctgtgccttcttctccaaaacctggattgaggtctcaggctcc 79739925
Query: 1277 tctgccaaggatgt 1290
||||||||||||||
Sbjct: 79739924 tctgccaaggatgt 79739911
Score = 325 bits (164), Expect = 9e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 736 aggaatggagtttgaaggtgccatcattgccctgttccacctgctggccacacgcacgga 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79742034 aggaatggagtttgaaggtgccatcattgccctgttccacctgctggccacacgcacgga 79741975
Query: 796 caaggtccgggcccttcgagaggccttctaccgccagaatctccccaacctcatgaatct 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79741974 caaggtccgggcccttcgagaggccttctaccgccagaatctccccaacctcatgaatct 79741915
Query: 856 gattgccaccatctttgtctttgccgtggtcatctacttccagg 899
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79741914 gattgccaccatctttgtctttgccgtggtcatctacttccagg 79741871
Score = 315 bits (159), Expect = 8e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 580 acagctctttgttgctggcctgattgttctgcttctggatgaacttctgcaaaaggggta 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79743592 acagctctttgttgctggcctgattgttctgcttctggatgaacttctgcaaaaggggta 79743533
Query: 640 tggcctgggctctgggatctccctcttcattgccacaaacatctgcgagaccatcgtgtg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79743532 tggcctgggctctgggatctccctcttcattgccacaaacatctgcgagaccatcgtgtg 79743473
Query: 700 gaaggctttcagccctaccactgtcaacactggccgagg 738
|||||||||||||||||||||||||||||||||||||||
Sbjct: 79743472 gaaggctttcagccctaccactgtcaacactggccgagg 79743434
Score = 258 bits (130), Expect = 2e-65
Identities = 133/134 (99%)
Strand = Plus / Minus
Query: 340 aggcacattgatggagctcggtatctctcccattgtcacttctggcctcatcatgcagct 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79746352 aggcacattgatggagctcggtatctctcccattgtcacttctggcctcatcatgcagct 79746293
Query: 400 cttggctggcgccaaaataattgaagttggtgacaccccaaaagaccgagccctcttcaa 459
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 79746292 cttggctggcgccaaaataattgaagtaggtgacaccccaaaagaccgagccctcttcaa 79746233
Query: 460 cggagctcagaagt 473
||||||||||||||
Sbjct: 79746232 cggagctcagaagt 79746219
Score = 252 bits (127), Expect = 1e-63
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 2 gtgtctctcggcgaggcgcggcgccccggaccaggccgggcgggcagtagagctgcactc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79751223 gtgtctctcggcgaggcgcggcgccccggaccaggccgggcgggcagtagagctgcactc 79751164
Query: 62 gcagcgcagcggagccggagcgcgacccggagcccgacctggagcccagcagccgccgcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79751163 gcagcgcagcggagccggagcgcgacccggagcccgacctggagcccagcagccgccgcc 79751104
Query: 122 atggcga 128
|||||||
Sbjct: 79751103 atggcga 79751097
Score = 218 bits (110), Expect = 1e-53
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 474 tatttggcatgatcatcaccattggccagtccatcgtgtatgtgatgacggggatgtatg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79743967 tatttggcatgatcatcaccattggccagtccatcgtgtatgtgatgacggggatgtatg 79743908
Query: 534 gagacccttctgaaatgggggctgggatctgcctgttgatcaccatacag 583
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79743907 gagacccttctgaaatgggggctgggatctgcctgttgatcaccatacag 79743858
Score = 167 bits (84), Expect = 5e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 259 ccagatccccctgtttggcatcatgtcttcagactcagccgaccctttctattggatgag 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79747660 ccagatccccctgtttggcatcatgtcttcagactcagccgaccctttctattggatgag 79747601
Query: 319 agtgatccttgcctcaaacagagg 342
||||||||||||||||||||||||
Sbjct: 79747600 agtgatccttgcctcaaacagagg 79747577
Score = 157 bits (79), Expect = 5e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 1289 gttgcaaagcagctgaaggagcagcagatggtgatgaggggccaccgagagacctccatg 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79739415 gttgcaaagcagctgaaggagcagcagatggtgatgaggggccaccgagagacctccatg 79739356
Query: 1349 gtccatgagctcaatcggt 1367
|||||||||||||||||||
Sbjct: 79739355 gtccatgagctcaatcggt 79739337
Score = 135 bits (68), Expect = 2e-28
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 195 agattcagtttaaggagaaagtgctatggactgccatcaccctcttcatcttcttggtct 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79747815 agattcagtttaaggagaaagtgctatggactgccatcaccctcttcatcttcttggtct 79747756
Query: 255 gctgccag 262
||||||||
Sbjct: 79747755 gctgccag 79747748
Score = 135 bits (68), Expect = 2e-28
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 129 tcaagtttctggaggtcatcaagcccttctgtgtcatcctgccagaaattcagaagccgg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79750928 tcaagtttctggaggtcatcaagcccttctgtgtcatcctgccagaaattcagaagccgg 79750869
Query: 189 agcggaag 196
||||||||
Sbjct: 79750868 agcggaag 79750861
>gb|JH118478.1| Sus scrofa unplaced genomic scaffold ChrUScaf556
Length = 230758
Score = 2888 bits (1457), Expect = 0.0
Identities = 1527/1557 (98%), Gaps = 1/1557 (0%)
Strand = Plus / Plus
Query: 1365 ggtacatccccactgctgcggcctttggtgggctgtgcatcggggccctctccgtcctgg 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10958 ggtacatccccactgctgcggcctttggtgggctgtgcatcggggccctctccgtcctgg 11017
Query: 1425 ctgacttcctgggcgccatcgggtctggaactgggatcctgctcgcggttaccatcatct 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11018 ctgacttcctgggcgccatcgggtctggaactgggatcctgctcgcggttaccatcatct 11077
Query: 1485 accagtactttgagatctttgtaaaggagcagagcgaggttggcagcatgggggcccttc 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11078 accagtactttgagatctttgtaaaggagcagagcgaggttggcagcatgggggcccttc 11137
Query: 1545 tcttctgagctgtggctcctggaccaggcaggcagtgtgctctgcggtggctgaaaaggg 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11138 tcttctgagctgtggctcctggaccaggcaggcagtgtgctctgcggtggctgaaaaggg 11197
Query: 1605 aacaacgaagccacactgtgggtgcttctcttgagcgctgctgtggcagagacttgggtt 1664
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11198 aacaacaaagccacactgtgggtgcttctcttgagcgctgctgtggcagagacttgggtt 11257
Query: 1665 tagtaacatgtttgaacttcatattctttcattccactttctaaagtgctcgaaattttc 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11258 tagtaacatgtttgaacttcatattctttcattccactttctaaagtgctcgaaattttc 11317
Query: 1725 caatttgaaattttgctttttactctggcactggcatcagaactgtagaagtgaggtctt 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11318 caatttgaaattttgctttttactctggcactggcatcagaactgtagaagtgaggtctt 11377
Query: 1785 aagctgccagtggtaggggtgctgagtgcctgtgcccaggtccatgtaacttttgtcgta 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11378 aagctgccagtggtaggggtgctgagtgcctgtgcccaggtccatgtaacttttgtcgta 11437
Query: 1845 accattgcaccttctcggcgctgtatgtgactgcagtggtctcagctgttccccttgaag 1904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11438 accattgcaccttctcggcgctgtatgtgactgcagtggtctcagctgttccccttgaag 11497
Query: 1905 ggactgtcttactggttagaagcacaaacattgttgaaatgtcccaccctgggtgcagga 1964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11498 ggactgtcttactggttagaagcacaaacattgttgaaatgtcccaccctgggtgcagga 11557
Query: 1965 gggcagacggctgggagcaggtcggttttctggtgtgtgtgggtcgctcgctggtgggtc 2024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11558 gggcagacggctgggagcaggtcggttttctggtgtgtgtgggtcgctcgctggtgggtc 11617
Query: 2025 cccttacaatcaggggcaggaacacctggcttaaaactgtttctctggaaaacacaattg 2084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11618 cccttacaatcaggggcaggaacacctggcttaaaactgtttctctggaaaacacaattg 11677
Query: 2085 ttttccctttttaaagtagttttttagggcagagcttcttccaaaagaaagggatgaatg 2144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11678 ttttccctttttaaagtagttttttagggcagagcttcttccaaaagaaagggatgaatg 11737
Query: 2145 tccagaagacactcttggctcatctgcatgtttttctacttttgcctattggctattctc 2204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11738 tccagaagacactcttggctcatctgcatgtttttctacttttgcctattggctattctc 11797
Query: 2205 cttggctggcctggtcgcgctctgctgtctctgctttgctaagcctgtgtcctctgctgg 2264
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11798 cttggctggcctggtcgggctctgctgtctctgctttgctaagcctgtgtcctctgctgg 11857
Query: 2265 agccaggccgcaatgctgtagctttgcagagtcacacggccatcgtgcagaggaccccaa 2324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11858 agccaggccgcaatgctgtagctttgcagagtcacacggccatcgtgcagaggaccccaa 11917
Query: 2325 gtggtctgtgcagttcctctgctgtcactggctttgctcctatggtgtgtccccttccca 2384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11918 gtggtctgtgcagttcctctgctgtcactggctttgctcctatggtgtgtccccttccca 11977
Query: 2385 cctggccaaggggaagcaccatggccagcctcagatgctaccttctaggctcaggacttc 2444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11978 cctggccaaggggaagcaccatggccagcctcagatgctaccttctaggctcaggacttc 12037
Query: 2445 ccacttgtattttcggaatgtttttactgtgcttattaggaccaaatgcaagtgaagtaa 2504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 12038 ccacttgtattttcggaatgtttttactgtgcttattaggaccaaatgcaagtgaaataa 12097
Query: 2505 atgacaagacacctcggtctgtctgcatttcagcagaactgcccagcagagacggcacag 2564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12098 atgacaagacacctcggtctgtctgcatttcagcagaactgcccagcagagacggcacag 12157
Query: 2565 gcacaggctctagattcatggtgaaatcagtgtcagannnnnnnnnnnnnnnnnatgaga 2624
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12158 gcacaggctctagattcatggtgaaatcagtgtcaga-ttttttttttttttttatgaga 12216
Query: 2625 ttctccaatgtttgctatnnnnnnnngactcacaattatgtataagttgacccagacctt 2684
|||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 12217 ttctccaatgtttgctataaaaaaaagactcacaattatgtataagttgacccagacctt 12276
Query: 2685 agggccccttggggaccagccacactcagcagcaggatggcagtcaggtgctacagcctg 2744
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 12277 agggccccttggggaccagccacactcagcagcaggatggcagtcaggtgctgcagcctg 12336
Query: 2745 agggcttctcaccagaggacaccccagttctaagttgggaaccccaggggccagtgcagt 2804
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 12337 agggcttctcaccagaggacaccccagttctaagttgggaaccccaggggctagtgcagt 12396
Query: 2805 cctgtgctgagatacctcaccagcagcgggcacacaatggccttcaaagcacagagccag 2864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12397 cctgtgctgagatacctcaccagcagcgggcacacaatggccttcaaagcacagagccag 12456
Query: 2865 cagaggtggtaaacttggcacccatctgagtccagagggcctgcaagaccttactgg 2921
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12457 cagaggtggtaaacttggcacccatctgagtccagagggcctgcaagaccttactgg 12513
Score = 400 bits (202), Expect = e-108
Identities = 202/202 (100%)
Strand = Plus / Plus
Query: 896 cagggcttccgcgtggacctgccgatcaagtcagcccgttaccgaggccagtacaacacc 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8139 cagggcttccgcgtggacctgccgatcaagtcagcccgttaccgaggccagtacaacacc 8198
Query: 956 taccctatcaagctcttctatacctccaacatccccatcatcctgcagtctgccctggtg 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8199 taccctatcaagctcttctatacctccaacatccccatcatcctgcagtctgccctggtg 8258
Query: 1016 tccaacctgtatgtcatctcccagatgctgtccgcccgcttcagtggcaacctgctggtt 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8259 tccaacctgtatgtcatctcccagatgctgtccgcccgcttcagtggcaacctgctggtt 8318
Query: 1076 agcctgctgggcacctggtctg 1097
||||||||||||||||||||||
Sbjct: 8319 agcctgctgggcacctggtctg 8340
Score = 385 bits (194), Expect = e-103
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 1097 gacacttcttctggtggcccagcacgtgcttatcctgttggcggcctttgctattacctg 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8624 gacacttcttctggtggcccagcacgtgcttatcctgttggcggcctttgctattacctg 8683
Query: 1157 tcccctccagagtcttttggctctgtcttggaagaccccgtccacgccgtcgtgtacata 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8684 tcccctccagagtcttttggctctgtcttggaagaccccgtccacgccgtcgtgtacata 8743
Query: 1217 gtgtttatgctgggctcctgtgccttcttctccaaaacctggattgaggtctcaggctcc 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8744 gtgtttatgctgggctcctgtgccttcttctccaaaacctggattgaggtctcaggctcc 8803
Query: 1277 tctgccaaggatgt 1290
||||||||||||||
Sbjct: 8804 tctgccaaggatgt 8817
Score = 325 bits (164), Expect = 9e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 736 aggaatggagtttgaaggtgccatcattgccctgttccacctgctggccacacgcacgga 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6652 aggaatggagtttgaaggtgccatcattgccctgttccacctgctggccacacgcacgga 6711
Query: 796 caaggtccgggcccttcgagaggccttctaccgccagaatctccccaacctcatgaatct 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6712 caaggtccgggcccttcgagaggccttctaccgccagaatctccccaacctcatgaatct 6771
Query: 856 gattgccaccatctttgtctttgccgtggtcatctacttccagg 899
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6772 gattgccaccatctttgtctttgccgtggtcatctacttccagg 6815
Score = 315 bits (159), Expect = 8e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 580 acagctctttgttgctggcctgattgttctgcttctggatgaacttctgcaaaaggggta 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5094 acagctctttgttgctggcctgattgttctgcttctggatgaacttctgcaaaaggggta 5153
Query: 640 tggcctgggctctgggatctccctcttcattgccacaaacatctgcgagaccatcgtgtg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5154 tggcctgggctctgggatctccctcttcattgccacaaacatctgcgagaccatcgtgtg 5213
Query: 700 gaaggctttcagccctaccactgtcaacactggccgagg 738
|||||||||||||||||||||||||||||||||||||||
Sbjct: 5214 gaaggctttcagccctaccactgtcaacactggccgagg 5252
Score = 297 bits (150), Expect = 2e-77
Identities = 193/202 (95%), Gaps = 4/202 (1%)
Strand = Plus / Plus
Query: 2943 cagaccagccaacaagaagaggcttgcctgatgtcacctggcaagtctgcaaagagccag 3002
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 12614 cagaccagccaacaagaagaggcttgcctgatgtcacctggcaagtccgcagagagccag 12673
Query: 3003 gcaggcctgcggactggggcgtccaccataccatacgtggccttgtccga-ccagtcccg 3061
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 12674 gcaggcctgcggactggggcgtccaccataccatacgtggccttgtccgacccagtcccg 12733
Query: 3062 agtggaga-ctgacatgaccccca-ccccactagtcctgctgcagcctgaacactgtgcc 3119
|||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct: 12734 agtggagacctgacatgacccccacccccactagtcctgctgcagcctgaccactgtggc 12793
Query: 3120 tcaaatt-ctgccccacagtca 3140
||| ||| ||||||||||||||
Sbjct: 12794 tcagattcctgccccacagtca 12815
Score = 258 bits (130), Expect = 2e-65
Identities = 133/134 (99%)
Strand = Plus / Plus
Query: 340 aggcacattgatggagctcggtatctctcccattgtcacttctggcctcatcatgcagct 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2235 aggcacattgatggagctcggtatctctcccattgtcacttctggcctcatcatgcagct 2294
Query: 400 cttggctggcgccaaaataattgaagttggtgacaccccaaaagaccgagccctcttcaa 459
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2295 cttggctggcgccaaaataattgaagtaggtgacaccccaaaagaccgagccctcttcaa 2354
Query: 460 cggagctcagaagt 473
||||||||||||||
Sbjct: 2355 cggagctcagaagt 2368
Score = 218 bits (110), Expect = 1e-53
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 474 tatttggcatgatcatcaccattggccagtccatcgtgtatgtgatgacggggatgtatg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4719 tatttggcatgatcatcaccattggccagtccatcgtgtatgtgatgacggggatgtatg 4778
Query: 534 gagacccttctgaaatgggggctgggatctgcctgttgatcaccatacag 583
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4779 gagacccttctgaaatgggggctgggatctgcctgttgatcaccatacag 4828
Score = 167 bits (84), Expect = 5e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 259 ccagatccccctgtttggcatcatgtcttcagactcagccgaccctttctattggatgag 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 ccagatccccctgtttggcatcatgtcttcagactcagccgaccctttctattggatgag 1135
Query: 319 agtgatccttgcctcaaacagagg 342
||||||||||||||||||||||||
Sbjct: 1136 agtgatccttgcctcaaacagagg 1159
Score = 157 bits (79), Expect = 5e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1289 gttgcaaagcagctgaaggagcagcagatggtgatgaggggccaccgagagacctccatg 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9313 gttgcaaagcagctgaaggagcagcagatggtgatgaggggccaccgagagacctccatg 9372
Query: 1349 gtccatgagctcaatcggt 1367
|||||||||||||||||||
Sbjct: 9373 gtccatgagctcaatcggt 9391
Score = 135 bits (68), Expect = 2e-28
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 195 agattcagtttaaggagaaagtgctatggactgccatcaccctcttcatcttcttggtct 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 agattcagtttaaggagaaagtgctatggactgccatcaccctcttcatcttcttggtct 980
Query: 255 gctgccag 262
||||||||
Sbjct: 981 gctgccag 988
>Sscrofa_Chr10
|| Length = 79102373
Score = 204 bits (103), Expect = 2e-49
Identities = 154/171 (90%)
Strand = Plus / Minus
Query: 896 cagggcttccgcgtggacctgccgatcaagtcagcccgttaccgaggccagtacaacacc 955
||||||||||| ||||||||||| |||||||| || || |||||||| ||||||| || |
Sbjct: 65585692 cagggcttccgtgtggacctgcccatcaagtcggcgcggtaccgagggcagtacagcagc 65585633
Query: 956 taccctatcaagctcttctatacctccaacatccccatcatcctgcagtctgccctggtg 1015
||||| |||||||||||||| || |||||||||||||||||||||||||| ||||| |||
Sbjct: 65585632 taccccatcaagctcttctacacgtccaacatccccatcatcctgcagtcggccctcgtg 65585573
Query: 1016 tccaacctgtatgtcatctcccagatgctgtccgcccgcttcagtggcaac 1066
|||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 65585572 tccaacctgtatgtcatctcccagatgctgtccgttcgatttagtggcaac 65585522
Score = 95.6 bits (48), Expect = 1e-16
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 476 tttggcatgatcatcaccattggccagtccatcgtgtatgtgatgacggggatgtatgga 535
||||| |||||||||||||| |||||| ||||||||||||| |||||||| ||||| ||
Sbjct: 65591822 tttgggatgatcatcaccatcggccaggccatcgtgtatgtcatgacgggcatgtacggg 65591763
Query: 536 gacccttctgaaatgggggctgggatctgcct 567
|||||| |||| ||||| || |||||||||||
Sbjct: 65591762 gaccctgctgagatgggcgccgggatctgcct 65591731
Score = 79.8 bits (40), Expect = 9e-12
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 1295 aagcagctgaaggagcagcagatggtgatgaggggccaccgagagacctccatggtccat 1354
|||||||| ||||| |||||||||||||||||||||||| | || ||||||||||| ||
Sbjct: 65580858 aagcagcttaaggaacagcagatggtgatgaggggccacagggacacctccatggttcac 65580799
Query: 1355 gagctcaa 1362
||||||||
Sbjct: 65580798 gagctcaa 65580791
Score = 79.8 bits (40), Expect = 9e-12
Identities = 124/152 (81%)
Strand = Plus / Minus
Query: 587 tttgttgctggcctgattgttctgcttctggatgaacttctgcaaaaggggtatggcctg 646
||||||||||| ||||||| ||||| | ||||| || || || ||||| || ||| ||
Sbjct: 65587258 tttgttgctggtttgattgtgctgctgttagatgagctgctacagaagggttacggcttg 65587199
Query: 647 ggctctgggatctccctcttcattgccacaaacatctgcgagaccatcgtgtggaaggct 706
|| ||||| || |||||||| |||||||| |||||||| |||||||| || ||||||||
Sbjct: 65587198 gggtctggtatttccctctttattgccaccaacatctgtgagaccattgtctggaaggcc 65587139
Query: 707 ttcagccctaccactgtcaacactggccgagg 738
|| || || ||||| | ||||||||||||||
Sbjct: 65587138 tttagtcccaccaccattaacactggccgagg 65587107
Score = 63.9 bits (32), Expect = 5e-07
Identities = 122/152 (80%)
Strand = Plus / Minus
Query: 1365 ggtacatccccactgctgcggcctttggtgggctgtgcatcggggccctctccgtcctgg 1424
||||||||||||| || || || ||||| || |||||||||| ||||| || ||| | |
Sbjct: 65578076 ggtacatccccacggccgctgcgtttgggggtttgtgcatcggcgccctgtcggtcttag 65578017
Query: 1425 ctgacttcctgggcgccatcgggtctggaactgggatcctgctcgcggttaccatcatct 1484
| |||||||| || |||||||| ||||| || || |||||||| || || || || || |
Sbjct: 65578016 ccgacttcctcggggccatcggctctggcaccggaatcctgcttgcagtcactattattt 65577957
Query: 1485 accagtactttgagatctttgtaaaggagcag 1516
| ||||| ||||| || ||||| |||||||||
Sbjct: 65577956 atcagtattttgaaatatttgttaaggagcag 65577925
Score = 60.0 bits (30), Expect = 8e-06
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 350 atggagctcggtatctctcccattgtcacttctggcctcatcatgcagctcttggctggc 409
|||||| | |||||||| || ||||| || ||||| | || |||||| | || |||||
Sbjct: 65592047 atggagttgggtatctccccaattgtaacatctggtttgattatgcagttgttagctgga 65591988
Query: 410 gccaaaataattgaagttggtgacaccccaaaagaccgagccctcttcaacggagctcag 469
|||||||| ||||||||||| || || || ||||| ||||||| ||||||||||| |||
Sbjct: 65591987 gccaaaatcattgaagttggagatacacccaaagatagagccctattcaacggagcccag 65591928
Query: 470 aa 471
||
Sbjct: 65591927 aa 65591926
>gb|GL893598.2| Sus scrofa unplaced genomic scaffold ChrUScaf1483
Length = 101682
Score = 159 bits (80), Expect = 1e-35
Identities = 104/112 (92%)
Strand = Plus / Plus
Query: 955 ctaccctatcaagctcttctatacctccaacatccccatcatcctgcagtctgccctggt 1014
|||||| |||||||||||||| || |||||||||||||||||||||||||| ||||| ||
Sbjct: 19554 ctaccccatcaagctcttctacacgtccaacatccccatcatcctgcagtcggccctcgt 19613
Query: 1015 gtccaacctgtatgtcatctcccagatgctgtccgcccgcttcagtggcaac 1066
|||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 19614 gtccaacctgtatgtcatctcccagatgctgtccgctcgatttagtggcaac 19665
Score = 95.6 bits (48), Expect = 1e-16
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 476 tttggcatgatcatcaccattggccagtccatcgtgtatgtgatgacggggatgtatgga 535
||||| |||||||||||||| |||||| ||||||||||||| |||||||| ||||| ||
Sbjct: 13620 tttgggatgatcatcaccatcggccaggccatcgtgtatgtcatgacgggcatgtacggg 13679
Query: 536 gacccttctgaaatgggggctgggatctgcct 567
|||||| |||| ||||| || |||||||||||
Sbjct: 13680 gaccctgctgagatgggcgccgggatctgcct 13711
Score = 79.8 bits (40), Expect = 9e-12
Identities = 124/152 (81%)
Strand = Plus / Plus
Query: 587 tttgttgctggcctgattgttctgcttctggatgaacttctgcaaaaggggtatggcctg 646
||||||||||| ||||||| ||||| | ||||| || || || ||||| || ||| ||
Sbjct: 17752 tttgttgctggtttgattgtgctgctgttagatgagctgctacagaagggttacggcttg 17811
Query: 647 ggctctgggatctccctcttcattgccacaaacatctgcgagaccatcgtgtggaaggct 706
|| ||||| || |||||||| |||||||| |||||||| |||||||| || ||||||||
Sbjct: 17812 gggtctggtatttccctctttattgccaccaacatctgtgagaccattgtctggaaggcc 17871
Query: 707 ttcagccctaccactgtcaacactggccgagg 738
|| || || ||||| | ||||||||||||||
Sbjct: 17872 tttagtcccaccaccattaacactggccgagg 17903
Score = 79.8 bits (40), Expect = 9e-12
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 1295 aagcagctgaaggagcagcagatggtgatgaggggccaccgagagacctccatggtccat 1354
|||||||| ||||| |||||||||||||||||||||||| | || ||||||||||| ||
Sbjct: 23957 aagcagcttaaggaacagcagatggtgatgaggggccacagggacacctccatggttcac 24016
Query: 1355 gagctcaa 1362
||||||||
Sbjct: 24017 gagctcaa 24024
Score = 63.9 bits (32), Expect = 5e-07
Identities = 122/152 (80%)
Strand = Plus / Plus
Query: 1365 ggtacatccccactgctgcggcctttggtgggctgtgcatcggggccctctccgtcctgg 1424
||||||||||||| || || || ||||| || |||||||||| ||||| || ||| | |
Sbjct: 26376 ggtacatccccacggccgctgcgtttgggggtttgtgcatcggcgccctgtcggtcttag 26435
Query: 1425 ctgacttcctgggcgccatcgggtctggaactgggatcctgctcgcggttaccatcatct 1484
| |||||||| || |||||||| ||||| || || |||||||| || || || || || |
Sbjct: 26436 ccgacttcctcggggccatcggctctggcaccggaatcctgcttgcagtcactattattt 26495
Query: 1485 accagtactttgagatctttgtaaaggagcag 1516
| ||||| ||||| || ||||| |||||||||
Sbjct: 26496 atcagtattttgaaatatttgttaaggagcag 26527
Score = 60.0 bits (30), Expect = 8e-06
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 350 atggagctcggtatctctcccattgtcacttctggcctcatcatgcagctcttggctggc 409
|||||| | |||||||| || ||||| || ||||| | || |||||| | || |||||
Sbjct: 13395 atggagttgggtatctccccaattgtaacatctggtttgattatgcagttgttagctgga 13454
Query: 410 gccaaaataattgaagttggtgacaccccaaaagaccgagccctcttcaacggagctcag 469
|||||||| ||||||||||| || || || ||||| ||||||| ||||||||||| |||
Sbjct: 13455 gccaaaatcattgaagttggagatacacccaaagatagagccctattcaacggagcccag 13514
Query: 470 aa 471
||
Sbjct: 13515 aa 13516
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 94,284,624
Number of extensions: 232
Number of successful extensions: 232
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 37
Length of query: 3205
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 3183
Effective length of database: 2,808,408,574
Effective search space: 8939164491042
Effective search space used: 8939164491042
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 19 (38.2 bits)
S2: 30 (60.0 bits)