Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012488
(1056 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849147.1| PREDICTED: similar to BCL2/adenovirus E1B 19-kD... 263 2e-70
Alignment gi|XP_850698.1| PREDICTED: similar to BCL2/adenovirus E1B 19kD-... 132 7e-31
Alignment gi|XP_851363.1| PREDICTED: similar to BCL2/adenovirus E1B 19kDa... 91 2e-18
>ref|XP_849147.1| PREDICTED: similar to BCL2/adenovirus E1B 19-kDa
protein-interacting protein 3 [Canis familiaris].
Length = 194
Score = 263 bits (672), Expect = 2e-70
Identities = 133/196 (67%), Positives = 145/196 (73%)
Frame = +2
Query: 158 MSQSEAPGLQEESLHGSWVELHFGSNGSGSSVPDSVSIYNGDMEKILLDAQHEXXXXXXX 337
MS S PGLQEE+L GSWVELHF +NG+GSSVP S SIYNGD+EKILLDAQHE
Sbjct: 1 MSHSGTPGLQEENLQGSWVELHFSNNGNGSSVPASASIYNGDLEKILLDAQHESGRSSSK 60
Query: 338 XXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDW 517
QTPQDT RASE D HS+GEKNS+QSEEDY+ERR+EVES+LKKNSDWIWDW
Sbjct: 61 SSHCDSPPRSQTPQDTTRASEVDTHSIGEKNSSQSEEDYIERRKEVESILKKNSDWIWDW 120
Query: 518 SSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXX 697
SSRPEN+PP + LLFKHPKRT TLSMRNTSVMKKGG+FSAEF
Sbjct: 121 SSRPENIPPKE--LLFKHPKRTATLSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIG 178
Query: 698 XGIYIGRRLTTSPSGF 745
GIYIGRRLTTS S F
Sbjct: 179 LGIYIGRRLTTSTSTF 194
>ref|XP_850698.1| PREDICTED: similar to BCL2/adenovirus E1B 19kD-interacting protein
3-like [Canis familiaris].
Length = 179
Score = 132 bits (331), Expect = 7e-31
Identities = 78/168 (46%), Positives = 99/168 (58%)
Frame = +2
Query: 227 GSNGSGSSVPDSVSIYNGDMEKILLDAQHEXXXXXXXXXXXXXXXXXQTPQDTNRASETD 406
G NG VP S SI+NGDMEKILLDAQHE Q +D + +
Sbjct: 12 GKNGGLEHVPSSSSIHNGDMEKILLDAQHESGQSSSRASSHCDSPSPQ--EDGQIMFDVE 69
Query: 407 AHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDWSSRPENVPPAKEFLLFKHPKRTT 586
H+ +S+QSEE+ E +EV++ LKK+ DW+ DWSSRPEN+PP KEF F+HPKR+
Sbjct: 70 MHT-SRDHSSQSEEEAAEGEKEVDA-LKKSVDWVSDWSSRPENIPP-KEF-HFRHPKRSV 125
Query: 587 TLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXXXGIYIGRRLTT 730
+LSMR + MKKGG+FSAEF GIYIG+RL+T
Sbjct: 126 SLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLALGLGIYIGKRLST 173
>ref|XP_851363.1| PREDICTED: similar to BCL2/adenovirus E1B 19kDa-interacting protein
3-like [Canis familiaris].
Length = 245
Score = 90.5 bits (223), Expect = 2e-18
Identities = 61/148 (41%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Frame = +2
Query: 164 QSEAPGLQEESLHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQH 313
+ E P L+ SWVEL S NG+G + VP S I+NGDMEKILLDAQH
Sbjct: 100 EGEQPLPPPAGLNSSWVELPMNSSNGNDNGNGKNGGLEYVPSSSCIHNGDMEKILLDAQH 159
Query: 314 EXXXXXXXXXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKK 493
E Q +D + + H+ +S+QSEE+ E +EV++ L+K
Sbjct: 160 ESGQSSSRASSHCDSPSLQ--EDGQIMCDVEMHT-SRDHSSQSEEEAAEGEKEVDA-LRK 215
Query: 494 NSDWIWDWSSRPENVPPAKEFLLFKHPK 577
+ W+ DWSSRPEN+PP KEF F+HPK
Sbjct: 216 SVGWVSDWSSRPENIPP-KEF-HFRHPK 241
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,556,025
Number of extensions: 771711
Number of successful extensions: 3787
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3768
Number of HSP's successfully gapped: 3
Length of query: 352
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 248
Effective length of database: 15,407,560
Effective search space: 3821074880
Effective search space used: 3821074880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012488
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012488
(1056 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069834.1| BCL2/adenovirus E1B 19 kDa protein-interacti... 297 1e-80
Alignment gi|NP_001029786.1| BCL2/adenovirus E1B 19 kDa protein-interacti... 136 3e-32
Alignment gi|XP_002698827.1| PREDICTED: BCL2/adenovirus E1B interacting p... 135 8e-32
Alignment gi|XP_001250958.1| PREDICTED: BCL2/adenovirus E1B interacting p... 135 8e-32
>ref|NP_001069834.1| BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [Bos
taurus].
Length = 196
Score = 297 bits (760), Expect = 1e-80
Identities = 149/196 (76%), Positives = 156/196 (79%)
Frame = +2
Query: 158 MSQSEAPGLQEESLHGSWVELHFGSNGSGSSVPDSVSIYNGDMEKILLDAQHEXXXXXXX 337
MSQSE+PGLQEESLHGSWVELHFGSNG+GSSVPDSVSIY GDMEKILLDAQHE
Sbjct: 1 MSQSESPGLQEESLHGSWVELHFGSNGNGSSVPDSVSIYKGDMEKILLDAQHESGRSSSK 60
Query: 338 XXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDW 517
QTPQDTNRASETD HS+GEKNS+QSEEDYMERR+EVES+LKKNSDWIWDW
Sbjct: 61 SSHCDSPPRSQTPQDTNRASETDTHSLGEKNSSQSEEDYMERRKEVESILKKNSDWIWDW 120
Query: 518 SSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXX 697
SSRPENVPPAKEFLLFKHPKRT TLSMRNTSVMKKGG+FSAEF
Sbjct: 121 SSRPENVPPAKEFLLFKHPKRTPTLSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIG 180
Query: 698 XGIYIGRRLTTSPSGF 745
GIYIGRRLTTS S F
Sbjct: 181 LGIYIGRRLTTSTSTF 196
>ref|NP_001029786.1| BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [Bos
taurus].
Length = 219
Score = 136 bits (343), Expect = 3e-32
Identities = 85/188 (45%), Positives = 110/188 (58%), Gaps = 10/188 (5%)
Frame = +2
Query: 197 LHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQHEXXXXXXXXXX 346
L+ SWVEL S NG+G + VP S SI+NGDMEKILLDAQHE
Sbjct: 32 LNSSWVELPMNSSNGNDNGNGKNGGLEHVPSSSSIHNGDMEKILLDAQHESGQSSSRGSS 91
Query: 347 XXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDWSSR 526
Q +D + + H+ + +S+QSEE+ E +EV++ LKK+ DW+ DWSSR
Sbjct: 92 HCDSPSPQ--EDGQIMFDVEMHT-SKDHSSQSEEEVAEGEKEVDA-LKKSVDWVSDWSSR 147
Query: 527 PENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXXXGI 706
PEN+PP KEF F+HPKR+ +LSMR + MKKGG+FSAEF GI
Sbjct: 148 PENIPP-KEF-HFRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLALGLGI 205
Query: 707 YIGRRLTT 730
YIG+RL+T
Sbjct: 206 YIGKRLST 213
>ref|XP_002698827.1| PREDICTED: BCL2/adenovirus E1B interacting protein 3-like [Bos
taurus].
Length = 219
Score = 135 bits (339), Expect = 8e-32
Identities = 85/188 (45%), Positives = 109/188 (57%), Gaps = 10/188 (5%)
Frame = +2
Query: 197 LHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQHEXXXXXXXXXX 346
L+ SWVEL S NG+G + VP S SI NGDMEKILLDAQHE
Sbjct: 32 LNSSWVELPMNSSNGNDNGNGKNGGLEHVPSSSSIRNGDMEKILLDAQHESGQSSSRGSS 91
Query: 347 XXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDWSSR 526
Q +D + + H+ + +S+QSEE+ E +EV++L KK+ DW+ DWSSR
Sbjct: 92 HCDSPSPQ--EDGQIMFDVEMHT-SKDHSSQSEEEVAEGEKEVDAL-KKSVDWVSDWSSR 147
Query: 527 PENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXXXGI 706
PEN+PP KEF F+HPKR+ +LSMR + MKKGG+FSAEF GI
Sbjct: 148 PENIPP-KEFH-FRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLALGLGI 205
Query: 707 YIGRRLTT 730
YIG+RL+T
Sbjct: 206 YIGKRLST 213
>ref|XP_001250958.1| PREDICTED: BCL2/adenovirus E1B interacting protein 3-like [Bos
taurus].
Length = 219
Score = 135 bits (339), Expect = 8e-32
Identities = 85/188 (45%), Positives = 109/188 (57%), Gaps = 10/188 (5%)
Frame = +2
Query: 197 LHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQHEXXXXXXXXXX 346
L+ SWVEL S NG+G + VP S SI NGDMEKILLDAQHE
Sbjct: 32 LNSSWVELPMNSSNGNDNGNGKNGGLEHVPSSSSIRNGDMEKILLDAQHESGQSSSRGSS 91
Query: 347 XXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDWSSR 526
Q +D + + H+ + +S+QSEE+ E +EV++L KK+ DW+ DWSSR
Sbjct: 92 HCDSPSPQ--EDGQIMFDVEMHT-SKDHSSQSEEEVAEGEKEVDAL-KKSVDWVSDWSSR 147
Query: 527 PENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXXXGI 706
PEN+PP KEF F+HPKR+ +LSMR + MKKGG+FSAEF GI
Sbjct: 148 PENIPP-KEFH-FRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLALGLGI 205
Query: 707 YIGRRLTT 730
YIG+RL+T
Sbjct: 206 YIGKRLST 213
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,359,761
Number of extensions: 783768
Number of successful extensions: 3346
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3321
Number of HSP's successfully gapped: 4
Length of query: 352
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 249
Effective length of database: 14,273,310
Effective search space: 3554054190
Effective search space used: 3554054190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012488
(1056 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359452.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protei... 316 1e-86
Alignment gi|XP_001927627.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protei... 137 1e-32
>ref|XP_003359452.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein
3-like [Sus scrofa].
Length = 196
Score = 316 bits (810), Expect = 1e-86
Identities = 161/196 (82%), Positives = 161/196 (82%)
Frame = +2
Query: 158 MSQSEAPGLQEESLHGSWVELHFGSNGSGSSVPDSVSIYNGDMEKILLDAQHEXXXXXXX 337
MSQSEAPGLQEESLHGSWVELHFGSNGSGSSVPDSVSIYNGDMEKILLDAQHE
Sbjct: 1 MSQSEAPGLQEESLHGSWVELHFGSNGSGSSVPDSVSIYNGDMEKILLDAQHESGRSSSK 60
Query: 338 XXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDW 517
QTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDW
Sbjct: 61 SSHCDSPPRSQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDW 120
Query: 518 SSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXX 697
SSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEF
Sbjct: 121 SSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFLKVFLPSLLLSHLLAIG 180
Query: 698 XGIYIGRRLTTSPSGF 745
GIYIGRRLTTSPSGF
Sbjct: 181 LGIYIGRRLTTSPSGF 196
>ref|XP_001927627.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein
3-like [Sus scrofa].
Length = 218
Score = 137 bits (344), Expect = 1e-32
Identities = 85/188 (45%), Positives = 110/188 (58%), Gaps = 10/188 (5%)
Frame = +2
Query: 197 LHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQHEXXXXXXXXXX 346
L+ SWVEL S NG+G + VP S SI+NGDMEKILLDAQHE
Sbjct: 31 LNSSWVELPMNSSNGNDNGNGKNGGLEHVPSSSSIHNGDMEKILLDAQHESGQSSSRGSS 90
Query: 347 XXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDWSSR 526
Q +D + + H+ +S+QSEE+ +E +EV++ LKK+ DW+ DWSSR
Sbjct: 91 HCDSPSPQ--EDGQIMFDVEMHT-SRDHSSQSEEEVVEGEKEVDA-LKKSVDWVSDWSSR 146
Query: 527 PENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXXXGI 706
PEN+PP KEF F+HPKR+ +LSMR + MKKGG+FSAEF GI
Sbjct: 147 PENIPP-KEF-HFRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLALGLGI 204
Query: 707 YIGRRLTT 730
YIG+RL+T
Sbjct: 205 YIGKRLST 212
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,288,562
Number of extensions: 556736
Number of successful extensions: 2170
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2163
Number of HSP's successfully gapped: 2
Length of query: 352
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,854,232
Effective search space: 2231266464
Effective search space used: 2231266464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012488
(1056 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033890.1| BCL2/adenovirus E1B 19 kDa protein-interacting ... 241 5e-64
Alignment gi|NP_033891.1| BCL2/adenovirus E1B 19 kDa protein-interacting ... 140 2e-33
Alignment gi|XP_001472192.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protei... 140 2e-33
Alignment gi|XP_001480489.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protei... 138 6e-33
Alignment gi|XP_003085849.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protei... 122 6e-28
>ref|NP_033890.1| BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [Mus
musculus].
Length = 187
Score = 241 bits (616), Expect = 5e-64
Identities = 130/186 (69%), Positives = 138/186 (74%)
Frame = +2
Query: 188 EESLHGSWVELHFGSNGSGSSVPDSVSIYNGDMEKILLDAQHEXXXXXXXXXXXXXXXXX 367
EE+L GSWVELHF SNG+GSSVP SVSIYNGDMEKILLDAQHE
Sbjct: 6 EENLQGSWVELHF-SNGNGSSVPASVSIYNGDMEKILLDAQHESGRSSSKSSHCDSPPRS 64
Query: 368 QTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDWSSRPENVPPA 547
QTPQDTNRA E D+HS GEKNS SEEDY+ERRREVES+LKKNSDWIWDWSSRPEN+PP
Sbjct: 65 QTPQDTNRA-EIDSHSFGEKNSTLSEEDYIERRREVESILKKNSDWIWDWSSRPENIPP- 122
Query: 548 KEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXXXGIYIGRRLT 727
KEF LFKHPKRT TLSMRNTSVMKKGG+FSA+F GIYIGRRLT
Sbjct: 123 KEF-LFKHPKRTATLSMRNTSVMKKGGIFSADFLKVFLPSLLLSHLLAIGLGIYIGRRLT 181
Query: 728 TSPSGF 745
TS S F
Sbjct: 182 TSTSTF 187
>ref|NP_033891.1| BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [Mus
musculus].
Length = 218
Score = 140 bits (352), Expect = 2e-33
Identities = 88/199 (44%), Positives = 113/199 (56%), Gaps = 10/199 (5%)
Frame = +2
Query: 164 QSEAPGLQEESLHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQH 313
+ E P L+ SWVEL S NG+G + VP S SI+NGDMEKILLDAQH
Sbjct: 20 EGEQPLPPPAGLNSSWVELPMNSSNGNENGNGKNGGLEHVPSSSSIHNGDMEKILLDAQH 79
Query: 314 EXXXXXXXXXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKK 493
E Q +D + + H+ +S+QSEE+ +E +EVE+ LKK
Sbjct: 80 ESGQSSSRGSSHCDSPSPQ--EDGQIMFDVEMHT-SRDHSSQSEEEVVEGEKEVEA-LKK 135
Query: 494 NSDWIWDWSSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXX 673
++DW+ DWSSRPEN+PP KEF F+HPKR +LSMR + MKKGG+FSAEF
Sbjct: 136 SADWVSDWSSRPENIPP-KEF-HFRHPKRAASLSMRKSGAMKKGGIFSAEFLKVFIPSLF 193
Query: 674 XXXXXXXXXGIYIGRRLTT 730
GIYIG+RL+T
Sbjct: 194 LSHVLALGLGIYIGKRLST 212
>ref|XP_001472192.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein
3-like [Mus musculus].
Length = 219
Score = 140 bits (352), Expect = 2e-33
Identities = 88/199 (44%), Positives = 113/199 (56%), Gaps = 10/199 (5%)
Frame = +2
Query: 164 QSEAPGLQEESLHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQH 313
+ E P L+ SWVEL S NG+G + VP S SI+NGDMEKILLDAQH
Sbjct: 21 EGEQPLPPPAGLNSSWVELPMNSSNGNENGNGKNGGLEHVPSSSSIHNGDMEKILLDAQH 80
Query: 314 EXXXXXXXXXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKK 493
E Q +D + + H+ +S+QSEE+ +E +EVE+ LKK
Sbjct: 81 ESGQSSSRGSSHCDSPSPQ--EDGQIMFDVEMHT-SRDHSSQSEEEVVEGEKEVEA-LKK 136
Query: 494 NSDWIWDWSSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXX 673
++DW+ DWSSRPEN+PP KEF F+HPKR +LSMR + MKKGG+FSAEF
Sbjct: 137 SADWVSDWSSRPENIPP-KEF-HFRHPKRAASLSMRKSGAMKKGGIFSAEFLKVFIPSLF 194
Query: 674 XXXXXXXXXGIYIGRRLTT 730
GIYIG+RL+T
Sbjct: 195 LSHVLALGLGIYIGKRLST 213
>ref|XP_001480489.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein
3-like [Mus musculus].
Length = 218
Score = 138 bits (348), Expect = 6e-33
Identities = 88/199 (44%), Positives = 112/199 (56%), Gaps = 10/199 (5%)
Frame = +2
Query: 164 QSEAPGLQEESLHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQH 313
+ E P L+ SWVEL S NG+G + VP S SI NGDMEKILLDAQH
Sbjct: 20 EGEQPLPPPAGLNSSWVELPMNSSNGNENGNGKNGGLEHVPSSSSIRNGDMEKILLDAQH 79
Query: 314 EXXXXXXXXXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKK 493
E Q +D + + H+ +S+QSEE+ +E +EVE+L KK
Sbjct: 80 ESGQSSSRGSSHCDSPSPQ--EDGQIMFDVEMHT-SRDHSSQSEEEVVEGEKEVEAL-KK 135
Query: 494 NSDWIWDWSSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXX 673
++DW+ DWSSRPEN+PP KEF F+HPKR +LSMR + MKKGG+FSAEF
Sbjct: 136 SADWVSDWSSRPENIPP-KEFH-FRHPKRAASLSMRKSGAMKKGGIFSAEFLKVFIPSLF 193
Query: 674 XXXXXXXXXGIYIGRRLTT 730
GIYIG+RL+T
Sbjct: 194 LSHVLALGLGIYIGKRLST 212
>ref|XP_003085849.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein
3-like [Mus musculus].
Length = 199
Score = 122 bits (305), Expect = 6e-28
Identities = 81/200 (40%), Positives = 104/200 (52%), Gaps = 11/200 (5%)
Frame = +2
Query: 164 QSEAPGLQEESLHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQH 313
+ E P L+ SWVEL S NG+G + VP S SI+NGDMEKILLDAQH
Sbjct: 20 EGEQPLPPPAGLNSSWVELPMNSSNGNENGNGKNGGLEHVPSSSSIHNGDMEKILLDAQH 79
Query: 314 EXXXXXXXXXXXXXXXXXQTPQDTNR-ASETDAHSVGEKNSAQSEEDYMERRREVESLLK 490
E + Q ++R +S D+ S E + E+ + +
Sbjct: 80 E------------------SGQSSSRGSSHCDSPSPQEDGQIMFDV-------EMHTSRE 114
Query: 491 KNSDWIWDWSSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXX 670
K++DW+ DWSSRPEN PP KEF F+HPKR +LSMR + MKKGG+FSAEF
Sbjct: 115 KSADWVSDWSSRPENHPPPKEF-HFRHPKRAASLSMRKSGAMKKGGIFSAEFLKVFIPSL 173
Query: 671 XXXXXXXXXXGIYIGRRLTT 730
GIYIG+RL+T
Sbjct: 174 FLSHVLALGLGIYIGKRLST 193
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,489,154
Number of extensions: 614876
Number of successful extensions: 2569
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2544
Number of HSP's successfully gapped: 5
Length of query: 352
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 250
Effective length of database: 12,553,887
Effective search space: 3138471750
Effective search space used: 3138471750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012488
(1056 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004043.2| BCL2/adenovirus E1B 19 kDa protein-interacting ... 268 8e-72
Alignment gi|NP_004322.1| BCL2/adenovirus E1B 19 kDa protein-interacting ... 139 4e-33
>ref|NP_004043.2| BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [Homo
sapiens].
Length = 194
Score = 268 bits (684), Expect = 8e-72
Identities = 138/196 (70%), Positives = 149/196 (76%)
Frame = +2
Query: 158 MSQSEAPGLQEESLHGSWVELHFGSNGSGSSVPDSVSIYNGDMEKILLDAQHEXXXXXXX 337
MSQ+ APG+QEESL GSWVELHF +NG+G SVP SVSIYNGDMEKILLDAQHE
Sbjct: 1 MSQNGAPGMQEESLQGSWVELHFSNNGNGGSVPASVSIYNGDMEKILLDAQHESGRSSSK 60
Query: 338 XXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDW 517
QTPQDTNRASETD HS+GEKNS+QSEED +ERR+EVES+LKKNSDWIWDW
Sbjct: 61 SSHCDSPPRSQTPQDTNRASETDTHSIGEKNSSQSEEDDIERRKEVESILKKNSDWIWDW 120
Query: 518 SSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXX 697
SSRPEN+PP KEF LFKHPKRT TLSMRNTSVMKKGG+FSAEF
Sbjct: 121 SSRPENIPP-KEF-LFKHPKRTATLSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIG 178
Query: 698 XGIYIGRRLTTSPSGF 745
GIYIGRRLTTS S F
Sbjct: 179 LGIYIGRRLTTSTSTF 194
>ref|NP_004322.1| BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [Homo
sapiens].
Length = 219
Score = 139 bits (350), Expect = 4e-33
Identities = 86/188 (45%), Positives = 111/188 (59%), Gaps = 10/188 (5%)
Frame = +2
Query: 197 LHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQHEXXXXXXXXXX 346
L+ SWVEL S NG+G + VP S SI+NGDMEKILLDAQHE
Sbjct: 32 LNSSWVELPMNSSNGNDNGNGKNGGLEHVPSSSSIHNGDMEKILLDAQHESGQSSSRGSS 91
Query: 347 XXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDWSSR 526
Q +D + + H+ +S+QSEE+ +E +EVE+ LKK++DW+ DWSSR
Sbjct: 92 HCDSPSPQ--EDGQIMFDVEMHT-SRDHSSQSEEEVVEGEKEVEA-LKKSADWVSDWSSR 147
Query: 527 PENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXXXGI 706
PEN+PP KEF F+HPKR+ +LSMR + MKKGG+FSAEF GI
Sbjct: 148 PENIPP-KEF-HFRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLALGLGI 205
Query: 707 YIGRRLTT 730
YIG+RL+T
Sbjct: 206 YIGKRLST 213
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,699,950
Number of extensions: 741658
Number of successful extensions: 3195
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3183
Number of HSP's successfully gapped: 2
Length of query: 352
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 248
Effective length of database: 14,868,908
Effective search space: 3687489184
Effective search space used: 3687489184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012488
(1056 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 688 0.0
Sscrofa_Chr05 226 2e-56
>Sscrofa_Chr14
|| Length = 153851969
Score = 688 bits (347), Expect = 0.0
Identities = 350/351 (99%)
Strand = Plus / Minus
Query: 702 ggatctacatcgggaggcgtctgaccacgtcccccagcggcttctgaggaagagcggggc 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195629 ggatctacatcgggaggcgtctgaccacgtcccccagcggcttctgaggaagagcggggc 152195570
Query: 762 ccggcgcgcccgtcggggctgtgggcgcgcagcacagctcgcggaagaagccgcgacgcc 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195569 ccggcgcgcccgtcggggctgtgggcgcgcagcacagctcgcggaagaagccgcgacgcc 152195510
Query: 822 cgcctgctcttgtgtaagcggcgcggtcctgactcgccaggttacagacaccacgactct 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195509 cgcctgctcttgtgtaagcggcgcggtcctgactcgccaggttacagacaccacgactct 152195450
Query: 882 gcccgcctgcctgggacccactcccggggtgggtcctaagcacgtcactggttcgcgtct 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195449 gcccgcctgcctgggacccactcccggggtgggtcctaagcacgtcactggttcgcgtct 152195390
Query: 942 cctgaatcacctgtagcgaccggtctctggacatgacagacgtcccagcataaataattt 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195389 cctgaatcacctgtagcgaccggtctctggacatgacagacgtcccagcataaataattt 152195330
Query: 1002 taacacacctagtcatgacgaatctagtattgtaacagggtatctgcagcc 1052
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 152195329 taacacacctagtcatgacgaatctagtattgtaacaggttatctgcagcc 152195279
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 550 ggagttcctcctcttcaagcacccgaagcgcacgaccacgctcagcatgaggaacacgag 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152197113 ggagttcctcctcttcaagcacccgaagcgcacgaccacgctcagcatgaggaacacgag 152197054
Query: 610 cgtgatgaagaaggggggcgtcttctcggccgagttcctcaaagtcttccttccgtctct 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152197053 cgtgatgaagaaggggggcgtcttctcggccgagttcctcaaagtcttccttccgtctct 152196994
Query: 670 tctgctgtcccacctgctggccatcgggctgggg 703
||||||||||||||||||||||||||||||||||
Sbjct: 152196993 tctgctgtcccacctgctggccatcgggctgggg 152196960
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 203 ggctcctgggtagaattgcactttggcagtaacgggagcgggagcagcgttccagactcc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152198900 ggctcctgggtagaattgcactttggcagtaacgggagcgggagcagcgttccagactcc 152198841
Query: 263 gtttctatttataacggcgacatggagaagatactgctcgatgcccagcacgaatctgga 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152198840 gtttctatttataacggcgacatggagaagatactgctcgatgcccagcacgaatctgga 152198781
Query: 323 cggagcagctccaagagctctcactgcgacag 354
||||||||||||||||||||||||||||||||
Sbjct: 152198780 cggagcagctccaagagctctcactgcgacag 152198749
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 352 cagcccgcctcgctcgcagacgccgcaggacacgaacagagcttctgagacagacgcaca 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152198468 cagcccgcctcgctcgcagacgccgcaggacacgaacagagcttctgagacagacgcaca 152198409
Query: 412 cagtgttggagaaaagaacagcgctcag 439
||||||||||||||||||||||||||||
Sbjct: 152198408 cagtgttggagaaaagaacagcgctcag 152198381
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 481 cctcctgaagaagaactcggactggatctgggactggtccagccggccggagaacgtccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152197291 cctcctgaagaagaactcggactggatctgggactggtccagccggccggagaacgtccc 152197232
Query: 541 ccctgccaag 550
||||||||||
Sbjct: 152197231 ccctgccaag 152197222
Score = 131 bits (66), Expect = 9e-28
Identities = 69/70 (98%)
Strand = Plus / Minus
Query: 1 tccgccgtgcgtccgccgccagcgtgagtcagtcgggccgcgggccgaccgcgctcgagc 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 152204695 tccgccgtgcgtccgccgccagcgtcagtcagtcgggccgcgggccgaccgcgctcgagc 152204636
Query: 61 tgctaggccc 70
||||||||||
Sbjct: 152204635 tgctaggccc 152204626
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 158 atgtctcagagcgaggcccccgggctgcaggaggagagcctgcacgg 204
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152204537 atgtctcagagcgaggcccccgggctgcaggaggagagcctgcacgg 152204491
>Sscrofa_Chr05
|| Length = 111506441
Score = 226 bits (114), Expect = 2e-56
Identities = 230/268 (85%), Gaps = 3/268 (1%)
Strand = Plus / Minus
Query: 171 aggcccccgggctgcaggaggagagcctgcacggctcctgggtagaattgcactttggca 230
||||||| |||||||||||||| |||||||| ||||||| |||||| || |||||||||
Sbjct: 81626958 aggcccctgggctgcaggaggaaagcctgcatggctcctcggtagagttatactttggca 81626899
Query: 231 gtaacgggagcgggagcagcgttccagactccgtttctatttataacggcgacatggaga 290
||| |||| ||||||| | |||||||||| |||||| ||||||| ||| ||||||| |
Sbjct: 81626898 ataatgggaatgggagcatcattccagactcggtttctgtttataatggcaacatggaaa 81626839
Query: 291 agatactgctcgatgcccagcacgaatctggacggagcagctccaagagctctcactgcg 350
| |||||||| ||||||||||| |||||||||| ||||||||| ||||| |||||||| |
Sbjct: 81626838 aaatactgctggatgcccagcatgaatctggacagagcagctctaagagttctcactgtg 81626779
Query: 351 acagcccgcctcgctcgcagacgccgcaggacacgaacagagcttctgagacagacgcac 410
||| ||| |||||||| |||| | || |||| ||||||||||||||||||||| |||
Sbjct: 81626778 acaacccacctcgctcacaga---cccaagacaataacagagcttctgagacagacacac 81626722
Query: 411 acagtgttggagaaaagaacagcgctca 438
| ||||||||||||||||||||| ||||
Sbjct: 81626721 atagtgttggagaaaagaacagctctca 81626694
Score = 143 bits (72), Expect = 2e-31
Identities = 132/152 (86%)
Strand = Plus / Minus
Query: 537 tcccccctgccaaggagttcctcctcttcaagcacccgaagcgcacgaccacgctcagca 596
||||||| ||||||||||||||||||| |||||||| | ||| ||||||||||||||
Sbjct: 81626595 tcccccccaccaaggagttcctcctctttaagcacccagcgtgcatgaccacgctcagca 81626536
Query: 597 tgaggaacacgagcgtgatgaagaaggggggcgtcttctcggccgagttcctcaaagtct 656
|||||||||| || ||||||||||| |||||| | |||| |||||||||||| ||| |
Sbjct: 81626535 tgaggaacacaagtgtgatgaagaaagggggcattttcttttccgagttcctcagagtat 81626476
Query: 657 tccttccgtctcttctgctgtcccacctgctg 688
| ||||| ||||||||||||||||||||||||
Sbjct: 81626475 ttcttccatctcttctgctgtcccacctgctg 81626444
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,063,917
Number of extensions: 106
Number of successful extensions: 106
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 11
Length of query: 1056
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1035
Effective length of database: 2,808,413,156
Effective search space: 2906707616460
Effective search space used: 2906707616460
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)