Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012489
(1432 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069834.1| BCL2/adenovirus E1B 19 kDa protein-interacti... 297 2e-80
Alignment gi|NP_001029786.1| BCL2/adenovirus E1B 19 kDa protein-interacti... 136 4e-32
Alignment gi|XP_002698827.1| PREDICTED: BCL2/adenovirus E1B interacting p... 135 1e-31
Alignment gi|XP_001250958.1| PREDICTED: BCL2/adenovirus E1B interacting p... 135 1e-31
>ref|NP_001069834.1| BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [Bos
taurus].
Length = 196
Score = 297 bits (760), Expect = 2e-80
Identities = 149/196 (76%), Positives = 156/196 (79%)
Frame = +3
Query: 162 MSQSEAPGLQEESLHGSWVELHFGSNGSGSSVPDSVSIYNGDMEKILLDAQHEXXXXXXX 341
MSQSE+PGLQEESLHGSWVELHFGSNG+GSSVPDSVSIY GDMEKILLDAQHE
Sbjct: 1 MSQSESPGLQEESLHGSWVELHFGSNGNGSSVPDSVSIYKGDMEKILLDAQHESGRSSSK 60
Query: 342 XXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDW 521
QTPQDTNRASETD HS+GEKNS+QSEEDYMERR+EVES+LKKNSDWIWDW
Sbjct: 61 SSHCDSPPRSQTPQDTNRASETDTHSLGEKNSSQSEEDYMERRKEVESILKKNSDWIWDW 120
Query: 522 SSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXX 701
SSRPENVPPAKEFLLFKHPKRT TLSMRNTSVMKKGG+FSAEF
Sbjct: 121 SSRPENVPPAKEFLLFKHPKRTPTLSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIG 180
Query: 702 XGIYIGRRLTTSPSGF 749
GIYIGRRLTTS S F
Sbjct: 181 LGIYIGRRLTTSTSTF 196
>ref|NP_001029786.1| BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [Bos
taurus].
Length = 219
Score = 136 bits (343), Expect = 4e-32
Identities = 85/188 (45%), Positives = 110/188 (58%), Gaps = 10/188 (5%)
Frame = +3
Query: 201 LHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQHEXXXXXXXXXX 350
L+ SWVEL S NG+G + VP S SI+NGDMEKILLDAQHE
Sbjct: 32 LNSSWVELPMNSSNGNDNGNGKNGGLEHVPSSSSIHNGDMEKILLDAQHESGQSSSRGSS 91
Query: 351 XXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDWSSR 530
Q +D + + H+ + +S+QSEE+ E +EV++ LKK+ DW+ DWSSR
Sbjct: 92 HCDSPSPQ--EDGQIMFDVEMHT-SKDHSSQSEEEVAEGEKEVDA-LKKSVDWVSDWSSR 147
Query: 531 PENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXXXGI 710
PEN+PP KEF F+HPKR+ +LSMR + MKKGG+FSAEF GI
Sbjct: 148 PENIPP-KEF-HFRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLALGLGI 205
Query: 711 YIGRRLTT 734
YIG+RL+T
Sbjct: 206 YIGKRLST 213
>ref|XP_002698827.1| PREDICTED: BCL2/adenovirus E1B interacting protein 3-like [Bos
taurus].
Length = 219
Score = 135 bits (339), Expect = 1e-31
Identities = 85/188 (45%), Positives = 109/188 (57%), Gaps = 10/188 (5%)
Frame = +3
Query: 201 LHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQHEXXXXXXXXXX 350
L+ SWVEL S NG+G + VP S SI NGDMEKILLDAQHE
Sbjct: 32 LNSSWVELPMNSSNGNDNGNGKNGGLEHVPSSSSIRNGDMEKILLDAQHESGQSSSRGSS 91
Query: 351 XXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDWSSR 530
Q +D + + H+ + +S+QSEE+ E +EV++L KK+ DW+ DWSSR
Sbjct: 92 HCDSPSPQ--EDGQIMFDVEMHT-SKDHSSQSEEEVAEGEKEVDAL-KKSVDWVSDWSSR 147
Query: 531 PENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXXXGI 710
PEN+PP KEF F+HPKR+ +LSMR + MKKGG+FSAEF GI
Sbjct: 148 PENIPP-KEFH-FRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLALGLGI 205
Query: 711 YIGRRLTT 734
YIG+RL+T
Sbjct: 206 YIGKRLST 213
>ref|XP_001250958.1| PREDICTED: BCL2/adenovirus E1B interacting protein 3-like [Bos
taurus].
Length = 219
Score = 135 bits (339), Expect = 1e-31
Identities = 85/188 (45%), Positives = 109/188 (57%), Gaps = 10/188 (5%)
Frame = +3
Query: 201 LHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQHEXXXXXXXXXX 350
L+ SWVEL S NG+G + VP S SI NGDMEKILLDAQHE
Sbjct: 32 LNSSWVELPMNSSNGNDNGNGKNGGLEHVPSSSSIRNGDMEKILLDAQHESGQSSSRGSS 91
Query: 351 XXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDWSSR 530
Q +D + + H+ + +S+QSEE+ E +EV++L KK+ DW+ DWSSR
Sbjct: 92 HCDSPSPQ--EDGQIMFDVEMHT-SKDHSSQSEEEVAEGEKEVDAL-KKSVDWVSDWSSR 147
Query: 531 PENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXXXGI 710
PEN+PP KEF F+HPKR+ +LSMR + MKKGG+FSAEF GI
Sbjct: 148 PENIPP-KEFH-FRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLALGLGI 205
Query: 711 YIGRRLTT 734
YIG+RL+T
Sbjct: 206 YIGKRLST 213
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,724,904
Number of extensions: 1302767
Number of successful extensions: 6008
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5978
Number of HSP's successfully gapped: 4
Length of query: 477
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 371
Effective length of database: 14,174,046
Effective search space: 5258571066
Effective search space used: 5258571066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012489
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012489
(1432 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849147.1| PREDICTED: similar to BCL2/adenovirus E1B 19-kD... 263 3e-70
Alignment gi|XP_850698.1| PREDICTED: similar to BCL2/adenovirus E1B 19kD-... 132 1e-30
Alignment gi|XP_851363.1| PREDICTED: similar to BCL2/adenovirus E1B 19kDa... 91 4e-18
>ref|XP_849147.1| PREDICTED: similar to BCL2/adenovirus E1B 19-kDa
protein-interacting protein 3 [Canis familiaris].
Length = 194
Score = 263 bits (672), Expect = 3e-70
Identities = 133/196 (67%), Positives = 145/196 (73%)
Frame = +3
Query: 162 MSQSEAPGLQEESLHGSWVELHFGSNGSGSSVPDSVSIYNGDMEKILLDAQHEXXXXXXX 341
MS S PGLQEE+L GSWVELHF +NG+GSSVP S SIYNGD+EKILLDAQHE
Sbjct: 1 MSHSGTPGLQEENLQGSWVELHFSNNGNGSSVPASASIYNGDLEKILLDAQHESGRSSSK 60
Query: 342 XXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDW 521
QTPQDT RASE D HS+GEKNS+QSEEDY+ERR+EVES+LKKNSDWIWDW
Sbjct: 61 SSHCDSPPRSQTPQDTTRASEVDTHSIGEKNSSQSEEDYIERRKEVESILKKNSDWIWDW 120
Query: 522 SSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXX 701
SSRPEN+PP + LLFKHPKRT TLSMRNTSVMKKGG+FSAEF
Sbjct: 121 SSRPENIPPKE--LLFKHPKRTATLSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIG 178
Query: 702 XGIYIGRRLTTSPSGF 749
GIYIGRRLTTS S F
Sbjct: 179 LGIYIGRRLTTSTSTF 194
>ref|XP_850698.1| PREDICTED: similar to BCL2/adenovirus E1B 19kD-interacting protein
3-like [Canis familiaris].
Length = 179
Score = 132 bits (331), Expect = 1e-30
Identities = 78/168 (46%), Positives = 99/168 (58%)
Frame = +3
Query: 231 GSNGSGSSVPDSVSIYNGDMEKILLDAQHEXXXXXXXXXXXXXXXXXQTPQDTNRASETD 410
G NG VP S SI+NGDMEKILLDAQHE Q +D + +
Sbjct: 12 GKNGGLEHVPSSSSIHNGDMEKILLDAQHESGQSSSRASSHCDSPSPQ--EDGQIMFDVE 69
Query: 411 AHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDWSSRPENVPPAKEFLLFKHPKRTT 590
H+ +S+QSEE+ E +EV++ LKK+ DW+ DWSSRPEN+PP KEF F+HPKR+
Sbjct: 70 MHT-SRDHSSQSEEEAAEGEKEVDA-LKKSVDWVSDWSSRPENIPP-KEF-HFRHPKRSV 125
Query: 591 TLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXXXGIYIGRRLTT 734
+LSMR + MKKGG+FSAEF GIYIG+RL+T
Sbjct: 126 SLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLALGLGIYIGKRLST 173
>ref|XP_851363.1| PREDICTED: similar to BCL2/adenovirus E1B 19kDa-interacting protein
3-like [Canis familiaris].
Length = 245
Score = 90.5 bits (223), Expect = 4e-18
Identities = 61/148 (41%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Frame = +3
Query: 168 QSEAPGLQEESLHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQH 317
+ E P L+ SWVEL S NG+G + VP S I+NGDMEKILLDAQH
Sbjct: 100 EGEQPLPPPAGLNSSWVELPMNSSNGNDNGNGKNGGLEYVPSSSCIHNGDMEKILLDAQH 159
Query: 318 EXXXXXXXXXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKK 497
E Q +D + + H+ +S+QSEE+ E +EV++ L+K
Sbjct: 160 ESGQSSSRASSHCDSPSLQ--EDGQIMCDVEMHT-SRDHSSQSEEEAAEGEKEVDA-LRK 215
Query: 498 NSDWIWDWSSRPENVPPAKEFLLFKHPK 581
+ W+ DWSSRPEN+PP KEF F+HPK
Sbjct: 216 SVGWVSDWSSRPENIPP-KEF-HFRHPK 241
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,527,836
Number of extensions: 1304875
Number of successful extensions: 6515
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6489
Number of HSP's successfully gapped: 3
Length of query: 477
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 370
Effective length of database: 15,307,552
Effective search space: 5663794240
Effective search space used: 5663794240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012489
(1432 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359452.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protei... 316 2e-86
Alignment gi|XP_001927627.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protei... 137 2e-32
>ref|XP_003359452.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein
3-like [Sus scrofa].
Length = 196
Score = 316 bits (810), Expect = 2e-86
Identities = 161/196 (82%), Positives = 161/196 (82%)
Frame = +3
Query: 162 MSQSEAPGLQEESLHGSWVELHFGSNGSGSSVPDSVSIYNGDMEKILLDAQHEXXXXXXX 341
MSQSEAPGLQEESLHGSWVELHFGSNGSGSSVPDSVSIYNGDMEKILLDAQHE
Sbjct: 1 MSQSEAPGLQEESLHGSWVELHFGSNGSGSSVPDSVSIYNGDMEKILLDAQHESGRSSSK 60
Query: 342 XXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDW 521
QTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDW
Sbjct: 61 SSHCDSPPRSQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDW 120
Query: 522 SSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXX 701
SSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEF
Sbjct: 121 SSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFLKVFLPSLLLSHLLAIG 180
Query: 702 XGIYIGRRLTTSPSGF 749
GIYIGRRLTTSPSGF
Sbjct: 181 LGIYIGRRLTTSPSGF 196
>ref|XP_001927627.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein
3-like [Sus scrofa].
Length = 218
Score = 137 bits (344), Expect = 2e-32
Identities = 85/188 (45%), Positives = 110/188 (58%), Gaps = 10/188 (5%)
Frame = +3
Query: 201 LHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQHEXXXXXXXXXX 350
L+ SWVEL S NG+G + VP S SI+NGDMEKILLDAQHE
Sbjct: 31 LNSSWVELPMNSSNGNDNGNGKNGGLEHVPSSSSIHNGDMEKILLDAQHESGQSSSRGSS 90
Query: 351 XXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDWSSR 530
Q +D + + H+ +S+QSEE+ +E +EV++ LKK+ DW+ DWSSR
Sbjct: 91 HCDSPSPQ--EDGQIMFDVEMHT-SRDHSSQSEEEVVEGEKEVDA-LKKSVDWVSDWSSR 146
Query: 531 PENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXXXGI 710
PEN+PP KEF F+HPKR+ +LSMR + MKKGG+FSAEF GI
Sbjct: 147 PENIPP-KEF-HFRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLALGLGI 204
Query: 711 YIGRRLTT 734
YIG+RL+T
Sbjct: 205 YIGKRLST 212
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,850,236
Number of extensions: 890679
Number of successful extensions: 3896
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3888
Number of HSP's successfully gapped: 2
Length of query: 477
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 374
Effective length of database: 8,779,541
Effective search space: 3283548334
Effective search space used: 3283548334
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012489
(1432 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033890.1| BCL2/adenovirus E1B 19 kDa protein-interacting ... 241 8e-64
Alignment gi|NP_033891.1| BCL2/adenovirus E1B 19 kDa protein-interacting ... 140 3e-33
Alignment gi|XP_001472192.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protei... 140 3e-33
Alignment gi|XP_001480489.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protei... 138 9e-33
Alignment gi|XP_003085849.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protei... 122 9e-28
>ref|NP_033890.1| BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [Mus
musculus].
Length = 187
Score = 241 bits (616), Expect = 8e-64
Identities = 130/186 (69%), Positives = 138/186 (74%)
Frame = +3
Query: 192 EESLHGSWVELHFGSNGSGSSVPDSVSIYNGDMEKILLDAQHEXXXXXXXXXXXXXXXXX 371
EE+L GSWVELHF SNG+GSSVP SVSIYNGDMEKILLDAQHE
Sbjct: 6 EENLQGSWVELHF-SNGNGSSVPASVSIYNGDMEKILLDAQHESGRSSSKSSHCDSPPRS 64
Query: 372 QTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDWSSRPENVPPA 551
QTPQDTNRA E D+HS GEKNS SEEDY+ERRREVES+LKKNSDWIWDWSSRPEN+PP
Sbjct: 65 QTPQDTNRA-EIDSHSFGEKNSTLSEEDYIERRREVESILKKNSDWIWDWSSRPENIPP- 122
Query: 552 KEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXXXGIYIGRRLT 731
KEF LFKHPKRT TLSMRNTSVMKKGG+FSA+F GIYIGRRLT
Sbjct: 123 KEF-LFKHPKRTATLSMRNTSVMKKGGIFSADFLKVFLPSLLLSHLLAIGLGIYIGRRLT 181
Query: 732 TSPSGF 749
TS S F
Sbjct: 182 TSTSTF 187
>ref|NP_033891.1| BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [Mus
musculus].
Length = 218
Score = 140 bits (352), Expect = 3e-33
Identities = 88/199 (44%), Positives = 113/199 (56%), Gaps = 10/199 (5%)
Frame = +3
Query: 168 QSEAPGLQEESLHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQH 317
+ E P L+ SWVEL S NG+G + VP S SI+NGDMEKILLDAQH
Sbjct: 20 EGEQPLPPPAGLNSSWVELPMNSSNGNENGNGKNGGLEHVPSSSSIHNGDMEKILLDAQH 79
Query: 318 EXXXXXXXXXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKK 497
E Q +D + + H+ +S+QSEE+ +E +EVE+ LKK
Sbjct: 80 ESGQSSSRGSSHCDSPSPQ--EDGQIMFDVEMHT-SRDHSSQSEEEVVEGEKEVEA-LKK 135
Query: 498 NSDWIWDWSSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXX 677
++DW+ DWSSRPEN+PP KEF F+HPKR +LSMR + MKKGG+FSAEF
Sbjct: 136 SADWVSDWSSRPENIPP-KEF-HFRHPKRAASLSMRKSGAMKKGGIFSAEFLKVFIPSLF 193
Query: 678 XXXXXXXXXGIYIGRRLTT 734
GIYIG+RL+T
Sbjct: 194 LSHVLALGLGIYIGKRLST 212
>ref|XP_001472192.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein
3-like [Mus musculus].
Length = 219
Score = 140 bits (352), Expect = 3e-33
Identities = 88/199 (44%), Positives = 113/199 (56%), Gaps = 10/199 (5%)
Frame = +3
Query: 168 QSEAPGLQEESLHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQH 317
+ E P L+ SWVEL S NG+G + VP S SI+NGDMEKILLDAQH
Sbjct: 21 EGEQPLPPPAGLNSSWVELPMNSSNGNENGNGKNGGLEHVPSSSSIHNGDMEKILLDAQH 80
Query: 318 EXXXXXXXXXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKK 497
E Q +D + + H+ +S+QSEE+ +E +EVE+ LKK
Sbjct: 81 ESGQSSSRGSSHCDSPSPQ--EDGQIMFDVEMHT-SRDHSSQSEEEVVEGEKEVEA-LKK 136
Query: 498 NSDWIWDWSSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXX 677
++DW+ DWSSRPEN+PP KEF F+HPKR +LSMR + MKKGG+FSAEF
Sbjct: 137 SADWVSDWSSRPENIPP-KEF-HFRHPKRAASLSMRKSGAMKKGGIFSAEFLKVFIPSLF 194
Query: 678 XXXXXXXXXGIYIGRRLTT 734
GIYIG+RL+T
Sbjct: 195 LSHVLALGLGIYIGKRLST 213
>ref|XP_001480489.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein
3-like [Mus musculus].
Length = 218
Score = 138 bits (348), Expect = 9e-33
Identities = 88/199 (44%), Positives = 112/199 (56%), Gaps = 10/199 (5%)
Frame = +3
Query: 168 QSEAPGLQEESLHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQH 317
+ E P L+ SWVEL S NG+G + VP S SI NGDMEKILLDAQH
Sbjct: 20 EGEQPLPPPAGLNSSWVELPMNSSNGNENGNGKNGGLEHVPSSSSIRNGDMEKILLDAQH 79
Query: 318 EXXXXXXXXXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKK 497
E Q +D + + H+ +S+QSEE+ +E +EVE+L KK
Sbjct: 80 ESGQSSSRGSSHCDSPSPQ--EDGQIMFDVEMHT-SRDHSSQSEEEVVEGEKEVEAL-KK 135
Query: 498 NSDWIWDWSSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXX 677
++DW+ DWSSRPEN+PP KEF F+HPKR +LSMR + MKKGG+FSAEF
Sbjct: 136 SADWVSDWSSRPENIPP-KEFH-FRHPKRAASLSMRKSGAMKKGGIFSAEFLKVFIPSLF 193
Query: 678 XXXXXXXXXGIYIGRRLTT 734
GIYIG+RL+T
Sbjct: 194 LSHVLALGLGIYIGKRLST 212
>ref|XP_003085849.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein
3-like [Mus musculus].
Length = 199
Score = 122 bits (305), Expect = 9e-28
Identities = 81/200 (40%), Positives = 104/200 (52%), Gaps = 11/200 (5%)
Frame = +3
Query: 168 QSEAPGLQEESLHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQH 317
+ E P L+ SWVEL S NG+G + VP S SI+NGDMEKILLDAQH
Sbjct: 20 EGEQPLPPPAGLNSSWVELPMNSSNGNENGNGKNGGLEHVPSSSSIHNGDMEKILLDAQH 79
Query: 318 EXXXXXXXXXXXXXXXXXQTPQDTNR-ASETDAHSVGEKNSAQSEEDYMERRREVESLLK 494
E + Q ++R +S D+ S E + E+ + +
Sbjct: 80 E------------------SGQSSSRGSSHCDSPSPQEDGQIMFDV-------EMHTSRE 114
Query: 495 KNSDWIWDWSSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXX 674
K++DW+ DWSSRPEN PP KEF F+HPKR +LSMR + MKKGG+FSAEF
Sbjct: 115 KSADWVSDWSSRPENHPPPKEF-HFRHPKRAASLSMRKSGAMKKGGIFSAEFLKVFIPSL 173
Query: 675 XXXXXXXXXXGIYIGRRLTT 734
GIYIG+RL+T
Sbjct: 174 FLSHVLALGLGIYIGKRLST 193
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,448,991
Number of extensions: 1040569
Number of successful extensions: 4442
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4411
Number of HSP's successfully gapped: 5
Length of query: 477
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 372
Effective length of database: 12,463,779
Effective search space: 4636525788
Effective search space used: 4636525788
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012489
(1432 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004043.2| BCL2/adenovirus E1B 19 kDa protein-interacting ... 268 1e-71
Alignment gi|NP_004322.1| BCL2/adenovirus E1B 19 kDa protein-interacting ... 139 6e-33
>ref|NP_004043.2| BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [Homo
sapiens].
Length = 194
Score = 268 bits (684), Expect = 1e-71
Identities = 138/196 (70%), Positives = 149/196 (76%)
Frame = +3
Query: 162 MSQSEAPGLQEESLHGSWVELHFGSNGSGSSVPDSVSIYNGDMEKILLDAQHEXXXXXXX 341
MSQ+ APG+QEESL GSWVELHF +NG+G SVP SVSIYNGDMEKILLDAQHE
Sbjct: 1 MSQNGAPGMQEESLQGSWVELHFSNNGNGGSVPASVSIYNGDMEKILLDAQHESGRSSSK 60
Query: 342 XXXXXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDW 521
QTPQDTNRASETD HS+GEKNS+QSEED +ERR+EVES+LKKNSDWIWDW
Sbjct: 61 SSHCDSPPRSQTPQDTNRASETDTHSIGEKNSSQSEEDDIERRKEVESILKKNSDWIWDW 120
Query: 522 SSRPENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXX 701
SSRPEN+PP KEF LFKHPKRT TLSMRNTSVMKKGG+FSAEF
Sbjct: 121 SSRPENIPP-KEF-LFKHPKRTATLSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIG 178
Query: 702 XGIYIGRRLTTSPSGF 749
GIYIGRRLTTS S F
Sbjct: 179 LGIYIGRRLTTSTSTF 194
>ref|NP_004322.1| BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [Homo
sapiens].
Length = 219
Score = 139 bits (350), Expect = 6e-33
Identities = 86/188 (45%), Positives = 111/188 (59%), Gaps = 10/188 (5%)
Frame = +3
Query: 201 LHGSWVELHFGS-----NGSGSS-----VPDSVSIYNGDMEKILLDAQHEXXXXXXXXXX 350
L+ SWVEL S NG+G + VP S SI+NGDMEKILLDAQHE
Sbjct: 32 LNSSWVELPMNSSNGNDNGNGKNGGLEHVPSSSSIHNGDMEKILLDAQHESGQSSSRGSS 91
Query: 351 XXXXXXXQTPQDTNRASETDAHSVGEKNSAQSEEDYMERRREVESLLKKNSDWIWDWSSR 530
Q +D + + H+ +S+QSEE+ +E +EVE+ LKK++DW+ DWSSR
Sbjct: 92 HCDSPSPQ--EDGQIMFDVEMHT-SRDHSSQSEEEVVEGEKEVEA-LKKSADWVSDWSSR 147
Query: 531 PENVPPAKEFLLFKHPKRTTTLSMRNTSVMKKGGVFSAEFXXXXXXXXXXXXXXXXXXGI 710
PEN+PP KEF F+HPKR+ +LSMR + MKKGG+FSAEF GI
Sbjct: 148 PENIPP-KEF-HFRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLALGLGI 205
Query: 711 YIGRRLTT 734
YIG+RL+T
Sbjct: 206 YIGKRLST 213
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,280,798
Number of extensions: 1256265
Number of successful extensions: 5534
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5515
Number of HSP's successfully gapped: 2
Length of query: 477
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 371
Effective length of database: 14,802,980
Effective search space: 5491905580
Effective search space used: 5491905580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012489
(1432 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1405 0.0
Sscrofa_Chr05 218 6e-54
>Sscrofa_Chr14
|| Length = 153851969
Score = 1405 bits (709), Expect = 0.0
Identities = 709/709 (100%)
Strand = Plus / Minus
Query: 706 ggatctacatcgggaggcgtctgaccacgtcccccagcggcttctgaggaagagcggggc 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195629 ggatctacatcgggaggcgtctgaccacgtcccccagcggcttctgaggaagagcggggc 152195570
Query: 766 ccggcgcgcccgtcggggctgtgggcgcgcagcacagctcgcggaagaagccgcgacgcc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195569 ccggcgcgcccgtcggggctgtgggcgcgcagcacagctcgcggaagaagccgcgacgcc 152195510
Query: 826 cgcctgctcttgtgtaagcggcgcggtcctgactcgccaggttacagacaccacgactct 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195509 cgcctgctcttgtgtaagcggcgcggtcctgactcgccaggttacagacaccacgactct 152195450
Query: 886 gcccgcctgcctgggacccactcccggggtgggtcctaagcacgtcactggttcgcgtct 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195449 gcccgcctgcctgggacccactcccggggtgggtcctaagcacgtcactggttcgcgtct 152195390
Query: 946 cctgaatcacctgtagcgaccggtctctggacatgacagacgtcccagcataaataattt 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195389 cctgaatcacctgtagcgaccggtctctggacatgacagacgtcccagcataaataattt 152195330
Query: 1006 taacacacctagtcatgacgaatctagtattgtaacaggttatctgcagccttgagttag 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195329 taacacacctagtcatgacgaatctagtattgtaacaggttatctgcagccttgagttag 152195270
Query: 1066 gcactcgataggaaaagactgcctgcggggtctgttacccacatggacgccacggcctca 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195269 gcactcgataggaaaagactgcctgcggggtctgttacccacatggacgccacggcctca 152195210
Query: 1126 ctactgcggacgagtgtgaagcggacgcctggctcccgcagagccctcctggctgtgccc 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195209 ctactgcggacgagtgtgaagcggacgcctggctcccgcagagccctcctggctgtgccc 152195150
Query: 1186 gtggctctgccacctgatctgtagaacccaggctacagatccgcccaggcgggcggtccc 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195149 gtggctctgccacctgatctgtagaacccaggctacagatccgcccaggcgggcggtccc 152195090
Query: 1246 ggcccacacgggaccgctgctgagactccggggacacggggaagctgctccgtctgcatt 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195089 ggcccacacgggaccgctgctgagactccggggacacggggaagctgctccgtctgcatt 152195030
Query: 1306 gctggctttagcctgcttgggctttgtgtgctcagaatcggcttgggtctaagctcctct 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152195029 gctggctttagcctgcttgggctttgtgtgctcagaatcggcttgggtctaagctcctct 152194970
Query: 1366 gtctacttagaaaggctggaatagaaaaaaataaatcttggccaacctc 1414
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152194969 gtctacttagaaaggctggaatagaaaaaaataaatcttggccaacctc 152194921
Score = 305 bits (154), Expect = 4e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 554 ggagttcctcctcttcaagcacccgaagcgcacgaccacgctcagcatgaggaacacgag 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152197113 ggagttcctcctcttcaagcacccgaagcgcacgaccacgctcagcatgaggaacacgag 152197054
Query: 614 cgtgatgaagaaggggggcgtcttctcggccgagttcctcaaagtcttccttccgtctct 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152197053 cgtgatgaagaaggggggcgtcttctcggccgagttcctcaaagtcttccttccgtctct 152196994
Query: 674 tctgctgtcccacctgctggccatcgggctgggg 707
||||||||||||||||||||||||||||||||||
Sbjct: 152196993 tctgctgtcccacctgctggccatcgggctgggg 152196960
Score = 301 bits (152), Expect = 6e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 207 ggctcctgggtagaattgcactttggcagtaacgggagcgggagcagcgttccagactcc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152198900 ggctcctgggtagaattgcactttggcagtaacgggagcgggagcagcgttccagactcc 152198841
Query: 267 gtttctatttataacggcgacatggagaagatactgctcgatgcccagcacgaatctgga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152198840 gtttctatttataacggcgacatggagaagatactgctcgatgcccagcacgaatctgga 152198781
Query: 327 cggagcagctccaagagctctcactgcgacag 358
||||||||||||||||||||||||||||||||
Sbjct: 152198780 cggagcagctccaagagctctcactgcgacag 152198749
Score = 167 bits (84), Expect = 2e-38
Identities = 87/88 (98%)
Strand = Plus / Minus
Query: 356 cagcccgcctcgctcgcagacgccgcaggacacgaacagagcttctgagacggacgcaca 415
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 152198468 cagcccgcctcgctcgcagacgccgcaggacacgaacagagcttctgagacagacgcaca 152198409
Query: 416 cagtgttggagaaaagaacagcgctcag 443
||||||||||||||||||||||||||||
Sbjct: 152198408 cagtgttggagaaaagaacagcgctcag 152198381
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 5 atccgccgtgcgtccgccgccagcgtcagtcagtcgggccgcgggccgaccgcgctcgag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152204696 atccgccgtgcgtccgccgccagcgtcagtcagtcgggccgcgggccgaccgcgctcgag 152204637
Query: 65 ctgctaggccc 75
|||||||||||
Sbjct: 152204636 ctgctaggccc 152204626
Score = 113 bits (57), Expect = 3e-22
Identities = 57/57 (100%)
Strand = Plus / Minus
Query: 485 cctcctgaagaagaactcggactggatctgggactggtccagccggccggagaacgt 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152197291 cctcctgaagaagaactcggactggatctgggactggtccagccggccggagaacgt 152197235
Score = 93.7 bits (47), Expect = 3e-16
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 162 atgtctcagagcgaggcccccgggctgcaggaggagagcctgcacgg 208
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152204537 atgtctcagagcgaggcccccgggctgcaggaggagagcctgcacgg 152204491
>Sscrofa_Chr05
|| Length = 111506441
Score = 218 bits (110), Expect = 6e-54
Identities = 229/268 (85%), Gaps = 3/268 (1%)
Strand = Plus / Minus
Query: 175 aggcccccgggctgcaggaggagagcctgcacggctcctgggtagaattgcactttggca 234
||||||| |||||||||||||| |||||||| ||||||| |||||| || |||||||||
Sbjct: 81626958 aggcccctgggctgcaggaggaaagcctgcatggctcctcggtagagttatactttggca 81626899
Query: 235 gtaacgggagcgggagcagcgttccagactccgtttctatttataacggcgacatggaga 294
||| |||| ||||||| | |||||||||| |||||| ||||||| ||| ||||||| |
Sbjct: 81626898 ataatgggaatgggagcatcattccagactcggtttctgtttataatggcaacatggaaa 81626839
Query: 295 agatactgctcgatgcccagcacgaatctggacggagcagctccaagagctctcactgcg 354
| |||||||| ||||||||||| |||||||||| ||||||||| ||||| |||||||| |
Sbjct: 81626838 aaatactgctggatgcccagcatgaatctggacagagcagctctaagagttctcactgtg 81626779
Query: 355 acagcccgcctcgctcgcagacgccgcaggacacgaacagagcttctgagacggacgcac 414
||| ||| |||||||| |||| | || |||| ||||||||||||||||| ||| |||
Sbjct: 81626778 acaacccacctcgctcacaga---cccaagacaataacagagcttctgagacagacacac 81626722
Query: 415 acagtgttggagaaaagaacagcgctca 442
| ||||||||||||||||||||| ||||
Sbjct: 81626721 atagtgttggagaaaagaacagctctca 81626694
Score = 141 bits (71), Expect = 1e-30
Identities = 125/143 (87%)
Strand = Plus / Minus
Query: 550 ccaaggagttcctcctcttcaagcacccgaagcgcacgaccacgctcagcatgaggaaca 609
||||||||||||||||||| |||||||| | ||| |||||||||||||||||||||||
Sbjct: 81626586 ccaaggagttcctcctctttaagcacccagcgtgcatgaccacgctcagcatgaggaaca 81626527
Query: 610 cgagcgtgatgaagaaggggggcgtcttctcggccgagttcctcaaagtcttccttccgt 669
| || ||||||||||| |||||| | |||| |||||||||||| ||| || ||||| |
Sbjct: 81626526 caagtgtgatgaagaaagggggcattttcttttccgagttcctcagagtatttcttccat 81626467
Query: 670 ctcttctgctgtcccacctgctg 692
|||||||||||||||||||||||
Sbjct: 81626466 ctcttctgctgtcccacctgctg 81626444
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,267,246
Number of extensions: 188
Number of successful extensions: 188
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 11
Length of query: 1432
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1411
Effective length of database: 2,808,413,156
Effective search space: 3962670963116
Effective search space used: 3962670963116
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)