Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012490
(462 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536063.1| PREDICTED: similar to 60S ribosomal protein L37... 191 2e-49
Alignment gi|XP_848711.1| PREDICTED: similar to 60S ribosomal protein L37... 188 2e-48
Alignment gi|XP_851214.1| PREDICTED: similar to 60S ribosomal protein L37... 187 5e-48
Alignment gi|XP_539441.1| PREDICTED: similar to 60S ribosomal protein L37... 168 2e-42
>ref|XP_536063.1| PREDICTED: similar to 60S ribosomal protein L37a [Canis
familiaris].
Length = 92
Score = 191 bits (485), Expect = 2e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 70 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 249
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 250 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 345
MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
>ref|XP_848711.1| PREDICTED: similar to 60S ribosomal protein L37a [Canis
familiaris].
Length = 92
Score = 188 bits (478), Expect = 2e-48
Identities = 91/92 (98%), Positives = 91/92 (98%)
Frame = +1
Query: 70 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 249
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 250 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 345
MKTVAGGAWTYNTTSAVTVKSA RRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSANRRLKELKDQ 92
>ref|XP_851214.1| PREDICTED: similar to 60S ribosomal protein L37a [Canis
familiaris].
Length = 92
Score = 187 bits (474), Expect = 5e-48
Identities = 90/92 (97%), Positives = 91/92 (98%)
Frame = +1
Query: 70 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 249
MAK TKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKCTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 250 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 345
MKT+AGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTMAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
>ref|XP_539441.1| PREDICTED: similar to 60S ribosomal protein L37a [Canis
familiaris].
Length = 92
Score = 168 bits (425), Expect = 2e-42
Identities = 81/92 (88%), Positives = 83/92 (90%)
Frame = +1
Query: 70 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 249
MA RTKK+ IVGKY TRYGASLRKM K IEISQHAKYTCSFCGKTKMKRR VGIW CGSC
Sbjct: 1 MANRTKKIRIVGKYRTRYGASLRKMEKMIEISQHAKYTCSFCGKTKMKRRTVGIWRCGSC 60
Query: 250 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 345
M TVAGG WTYN+TSAVTVKSAIRRLKELKDQ
Sbjct: 61 MMTVAGGTWTYNSTSAVTVKSAIRRLKELKDQ 92
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 17,023,514
Number of extensions: 422894
Number of successful extensions: 1711
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1710
Number of HSP's successfully gapped: 4
Length of query: 154
Length of database: 18,874,504
Length adjustment: 94
Effective length of query: 60
Effective length of database: 15,740,920
Effective search space: 944455200
Effective search space used: 944455200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Animal-Genome cDNA 20110601C-012490
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012490
(462 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030180.1| 60S ribosomal protein L37a [Bos taurus]. 191 2e-49
Alignment gi|XP_002697942.1| PREDICTED: ribosomal protein L37a-like [Bos ... 97 6e-21
Alignment gi|XP_002703117.1| PREDICTED: ribosomal protein L37a-like [Bos ... 97 6e-21
>ref|NP_001030180.1| 60S ribosomal protein L37a [Bos taurus].
Length = 92
Score = 191 bits (485), Expect = 2e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 70 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 249
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 250 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 345
MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
>ref|XP_002697942.1| PREDICTED: ribosomal protein L37a-like [Bos taurus].
Length = 111
Score = 97.1 bits (240), Expect = 6e-21
Identities = 54/87 (62%), Positives = 60/87 (68%)
Frame = +1
Query: 64 GKMAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCG 243
G + K T KV IVGK+GT Y ASL K VKK E SQHAK TCSFCGKTK KRRAVG
Sbjct: 19 GYLVKCTNKVRIVGKHGTCYDASLSKPVKKTETSQHAKQTCSFCGKTK-KRRAVG----- 72
Query: 244 SCMKTVAGGAWTYNTTSAVTVKSAIRR 324
+GGAWT+ TTSA+TVK+A R
Sbjct: 73 -----TSGGAWTFTTTSAITVKAASER 94
>ref|XP_002703117.1| PREDICTED: ribosomal protein L37a-like [Bos taurus].
Length = 111
Score = 97.1 bits (240), Expect = 6e-21
Identities = 54/87 (62%), Positives = 60/87 (68%)
Frame = +1
Query: 64 GKMAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCG 243
G + K T KV IVGK+GT Y ASL K VKK E SQHAK TCSFCGKTK KRRAVG
Sbjct: 19 GYLVKCTNKVRIVGKHGTCYDASLSKPVKKTETSQHAKQTCSFCGKTK-KRRAVG----- 72
Query: 244 SCMKTVAGGAWTYNTTSAVTVKSAIRR 324
+GGAWT+ TTSA+TVK+A R
Sbjct: 73 -----TSGGAWTFTTTSAITVKAASER 94
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 16,646,090
Number of extensions: 465089
Number of successful extensions: 1602
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1596
Number of HSP's successfully gapped: 3
Length of query: 154
Length of database: 17,681,374
Length adjustment: 93
Effective length of query: 61
Effective length of database: 14,604,190
Effective search space: 890855590
Effective search space used: 890855590
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012490
(462 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359690.1| PREDICTED: 60S ribosomal protein L37a-like i... 191 2e-49
Alignment gi|XP_003359691.1| PREDICTED: 60S ribosomal protein L37a-like i... 191 2e-49
Alignment gi|XP_003133167.1| PREDICTED: 60S ribosomal protein L37a-like [... 165 9e-42
>ref|XP_003359690.1| PREDICTED: 60S ribosomal protein L37a-like isoform 1 [Sus scrofa].
Length = 92
Score = 191 bits (485), Expect = 2e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 70 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 249
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 250 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 345
MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
>ref|XP_003359691.1| PREDICTED: 60S ribosomal protein L37a-like isoform 2 [Sus scrofa].
Length = 101
Score = 191 bits (484), Expect = 2e-49
Identities = 93/101 (92%), Positives = 94/101 (93%)
Frame = +1
Query: 43 LGSDRVCGKMAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRA 222
+G G AKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRA
Sbjct: 1 MGERGAGGGWAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRA 60
Query: 223 VGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 345
VGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 VGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 101
>ref|XP_003133167.1| PREDICTED: 60S ribosomal protein L37a-like [Sus scrofa].
Length = 91
Score = 165 bits (418), Expect = 9e-42
Identities = 82/92 (89%), Positives = 83/92 (90%)
Frame = +1
Query: 70 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 249
MAK TK VGIVGKY T YGAS RKMVKKIEISQH KYTCSFCGKTKMKRRA GIWHCGSC
Sbjct: 1 MAKSTK-VGIVGKYRTCYGASFRKMVKKIEISQHTKYTCSFCGKTKMKRRAAGIWHCGSC 59
Query: 250 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 345
MK VAGGAWTYNTTSAV VKSAIR+LKELKDQ
Sbjct: 60 MKMVAGGAWTYNTTSAVMVKSAIRQLKELKDQ 91
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 11,144,455
Number of extensions: 365992
Number of successful extensions: 1083
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1083
Number of HSP's successfully gapped: 3
Length of query: 154
Length of database: 11,343,932
Length adjustment: 90
Effective length of query: 64
Effective length of database: 9,103,202
Effective search space: 582604928
Effective search space used: 582604928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012490
(462 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001004924.1| PREDICTED: 60S ribosomal protein L37a-like [... 191 2e-49
Alignment gi|XP_911870.1| PREDICTED: 60S ribosomal protein L37a-like [Mus... 191 2e-49
Alignment gi|NP_033110.1| 60S ribosomal protein L37a [Mus musculus]. 191 2e-49
Alignment gi|XP_001480957.1| PREDICTED: 60S ribosomal protein L37a [Mus m... 187 2e-48
Alignment gi|XP_003086624.1| PREDICTED: 60S ribosomal protein L37a [Mus m... 187 2e-48
>ref|XP_001004924.1| PREDICTED: 60S ribosomal protein L37a-like [Mus musculus].
Length = 92
Score = 191 bits (485), Expect = 2e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 70 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 249
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 250 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 345
MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
>ref|XP_911870.1| PREDICTED: 60S ribosomal protein L37a-like [Mus musculus].
Length = 92
Score = 191 bits (485), Expect = 2e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 70 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 249
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 250 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 345
MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
>ref|NP_033110.1| 60S ribosomal protein L37a [Mus musculus].
Length = 92
Score = 191 bits (485), Expect = 2e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 70 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 249
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 250 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 345
MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
>ref|XP_001480957.1| PREDICTED: 60S ribosomal protein L37a [Mus musculus].
Length = 101
Score = 187 bits (476), Expect = 2e-48
Identities = 89/94 (94%), Positives = 93/94 (98%)
Frame = +1
Query: 70 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 249
MA+RTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAERTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 250 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ*K 351
+KTVAGGAWTYNTTSA+TVKSA+RRLKELKDQ K
Sbjct: 61 IKTVAGGAWTYNTTSAITVKSAVRRLKELKDQQK 94
>ref|XP_003086624.1| PREDICTED: 60S ribosomal protein L37a [Mus musculus].
Length = 101
Score = 187 bits (476), Expect = 2e-48
Identities = 89/94 (94%), Positives = 93/94 (98%)
Frame = +1
Query: 70 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 249
MA+RTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAERTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 250 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ*K 351
+KTVAGGAWTYNTTSA+TVKSA+RRLKELKDQ K
Sbjct: 61 IKTVAGGAWTYNTTSAITVKSAVRRLKELKDQQK 94
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 14,310,842
Number of extensions: 361422
Number of successful extensions: 1522
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1519
Number of HSP's successfully gapped: 5
Length of query: 154
Length of database: 15,617,559
Length adjustment: 92
Effective length of query: 62
Effective length of database: 12,854,247
Effective search space: 796963314
Effective search space used: 796963314
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012490
(462 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000989.1| 60S ribosomal protein L37a [Homo sapiens]. 191 2e-49
>ref|NP_000989.1| 60S ribosomal protein L37a [Homo sapiens].
Length = 92
Score = 191 bits (485), Expect = 2e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 70 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 249
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 250 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 345
MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 16,797,317
Number of extensions: 420615
Number of successful extensions: 1790
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1785
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 18,297,164
Length adjustment: 94
Effective length of query: 60
Effective length of database: 15,198,548
Effective search space: 911912880
Effective search space used: 911912880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012490
(462 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 502 e-140
Sscrofa_Chr05 416 e-114
gb|GL893735.2| Sus scrofa unplaced genomic scaffold ChrUScaf1620 400 e-109
Sscrofa_Chr13 317 3e-84
Sscrofa_Chr06 285 1e-74
Sscrofa_Chr09 278 3e-72
Sscrofa_Chr01 190 5e-46
Sscrofa_Chr08 159 2e-36
Sscrofa_Chr10 90 1e-15
>Sscrofa_Chr14
|| Length = 153851969
Score = 502 bits (253), Expect = e-140
Identities = 324/347 (93%), Gaps = 3/347 (0%)
Strand = Plus / Plus
Query: 59 tttgcggcaaaatggccaaacgcaccaagaaggttggaatcgtgggcaaatacgggaccc 118
|||| ||||||||||||||| |||||||| || ||||||||||| |||||| |||||
Sbjct: 100785646 tttgtggcaaaatggccaaaagcaccaag---gtcggaatcgtgggtaaatacaggacct 100785702
Query: 119 gttatggtgcttccctcaggaaaatggtgaagaaaattgaaatcagtcagcacgccaagt 178
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 100785703 gttatggtgcttctttcaggaaaatggtgaagaaaattgaaatcagtcagcacaccaagt 100785762
Query: 179 acacttgctccttctgtggcaaaaccaagatgaagagacgagctgtgggcatctggcact 238
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 100785763 acacttgctccttctgtggcaaaaccaagatgaagagacgagctgcaggcatctggcact 100785822
Query: 239 gtggttcctgcatgaaaacggtagctggtggtgcctggacctacaacaccacttctgctg 298
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 100785823 gtggttcctgcatgaaaatggtagctggtggtgcctggacctacaacaccacttctgctg 100785882
Query: 299 tcacagtaaagtctgccatcagaagactgaaggaattgaaggaccagtagaagcaccacc 358
||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 100785883 tcatggtaaagtctgccatcagacaactgaaggaattgaaggaccagtagaagcactacc 100785942
Query: 359 agtggaaattttgctagcctataataaatgggttaatttatgtaaca 405
| |||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 100785943 aatggaaactttgctagcctataataaataggttaatttatgtaaca 100785989
Score = 71.9 bits (36), Expect = 3e-10
Identities = 95/112 (84%), Gaps = 2/112 (1%)
Strand = Plus / Minus
Query: 138 gaaaatggtgaagaaaattgaaatcagtcagcacgccaagtacacttgctccttctg-tg 196
|||||||||||||||| ||||| |||| ||||| |||||| ||||||||| | |||| |
Sbjct: 77811803 gaaaatggtgaagaaagttgaagtcagccagcatgccaaggacacttgcttc-tctgacg 77811745
Query: 197 gcaaaaccaagatgaagagacgagctgtgggcatctggcactgtggttcctg 248
|||| |||||||||||||| ||||| |||| |||||| ||||| ||||||
Sbjct: 77811744 tcaaatccaagatgaagagatgagctttggggttctggcgctgtgattcctg 77811693
>Sscrofa_Chr05
|| Length = 111506441
Score = 416 bits (210), Expect = e-114
Identities = 328/366 (89%), Gaps = 1/366 (0%)
Strand = Plus / Minus
Query: 38 gctctctgggctcggaccgggtttgcggcaaaatggccaaacgcaccaagaaggttggaa 97
|||||||||||| | ||| |||| |||||| |||||||||| |||||||||||| |||
Sbjct: 15606568 gctctctgggcttgaaccaagttttcggcaacatggccaaacacaccaagaaggtcagaa 15606509
Query: 98 tcgtgggcaaatacgggacccgttatggtgcttccctcaggaaaatggtgaagaaaattg 157
|| |||| |||||| ||| |||||||| |||||||||||||||||||| |||||||| ||
Sbjct: 15606508 tcatgggtaaatacaggatccgttatgatgcttccctcaggaaaatggcgaagaaaaatg 15606449
Query: 158 aaatcagtcagcacgccaagtacacttgctccttctgtggcaaaaccaagatgaagagac 217
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 15606448 aaatcagccagcataccaagtacacttgctccatctgtggcaaaaccaagatgaagagat 15606389
Query: 218 gagctgtgggcatctggcactgtggttcctgcatgaaaacggtagctggtggtgcctgga 277
||||||||||||| ||| ||||||||||||||||| |||| ||||||||| |||| ||||
Sbjct: 15606388 gagctgtgggcat-tgggactgtggttcctgcatggaaactgtagctggtagtgcttgga 15606330
Query: 278 cctacaacaccacttctgctgtcacagtaaagtctgccatcagaagactgaaggaattga 337
|||||||||||||| | || ||||||||||||||||||||| ||||||||||||||| |
Sbjct: 15606329 cctacaacaccactcccgccatcacagtaaagtctgccatcaaaagactgaaggaattaa 15606270
Query: 338 aggaccagtagaagcaccaccagtggaaattttgctagcctataataaatgggttaattt 397
|||||||||||||||||||||| |||||| || |||||||||||||||| |||||||||
Sbjct: 15606269 aggaccagtagaagcaccaccattggaaaccttactagcctataataaataggttaattt 15606210
Query: 398 atgtaa 403
||||||
Sbjct: 15606209 atgtaa 15606204
>gb|GL893735.2| Sus scrofa unplaced genomic scaffold ChrUScaf1620
Length = 145580
Score = 400 bits (202), Expect = e-109
Identities = 271/294 (92%)
Strand = Plus / Minus
Query: 62 gcggcaaaatggccaaacgcaccaagaaggttggaatcgtgggcaaatacgggacccgtt 121
||||||| |||||||| ||||||||| ||| ||||| ||||| |||||||||||| ||
Sbjct: 93969 gcggcaacctggccaaatgcaccaagatggtcggaattgtgggtaaatacgggacctatt 93910
Query: 122 atggtgcttccctcaggaaaatggtgaagaaaattgaaatcagtcagcacgccaagtaca 181
|| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 93909 atcgtgcttccctcaggaaaatggtgaagaaaattgaaatcagctagcacaccaagtaca 93850
Query: 182 cttgctccttctgtggcaaaaccaagatgaagagacgagctgtgggcatctggcactgtg 241
||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||
Sbjct: 93849 cttgctccttctgtggcaaaaccaagatgaagagatgagcgatgggcatctggcacggtg 93790
Query: 242 gttcctgcatgaaaacggtagctggtggtgcctggacctacaacaccacttctgctgtca 301
|||||||||||||||| |||||||||||| |||||||| |||||||||||||||| ||||
Sbjct: 93789 gttcctgcatgaaaacagtagctggtggtacctggacccacaacaccacttctgccgtca 93730
Query: 302 cagtaaagtctgccatcagaagactgaaggaattgaaggaccagtagaagcacc 355
|||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 93729 cagtaaagtctgccatcagaagactgaaggaactgcaggaccagtagaagcacc 93676
>Sscrofa_Chr13
|| Length = 218635234
Score = 317 bits (160), Expect = 3e-84
Identities = 317/368 (86%), Gaps = 16/368 (4%)
Strand = Plus / Minus
Query: 38 gctctctgggctcggaccgggtttgcggcaaaatggccaaacgcaccaagaaggttggaa 97
||||||| |||| || || |||||| |||||| ||| |||| ||| |||||||| ||||
Sbjct: 150058466 gctctctaggcttggtccaggtttgtggcaaagtggtcaaaggcat-aagaaggtcggaa 150058408
Query: 98 tcgtgggcaaatacgggacccgttatggtgcttccctcaggaaaatggtgaagaaaattg 157
|| || | ||||| |||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 150058407 tcatgagtaaatatgggatccgttatggtgcttccctcaggaaa-tggtgaaaaaaatta 150058349
Query: 158 aaatcagtcagcacgccaagtacacttgctccttctgtggcaaaaccaagatgaagagac 217
||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 150058348 aaatcagccagcaagccaagtatacttgcttcttctgtggcaaaaccaagatgaagag-- 150058291
Query: 218 gagctgtgggcatctggcactgtggttcctgcatgaaaacggtagctggtggtgcctgga 277
|||||||||||||||| ||||||||||||| ||||||||||||| ||||||
Sbjct: 150058290 ---------gcatctggcactgtggctcctgcatgaaaatggtagctggtggtacctgga 150058240
Query: 278 cctacaacaccacttctgctgtcacagtaaagtctgccatcagaagactgaaggaattga 337
|||||| |||||||||| ||||||||||||| |||||||||||||| ||| ||||||
Sbjct: 150058239 cctaca---ccacttctgccatcacagtaaagtcagccatcagaagactcaagaaattga 150058183
Query: 338 aggaccagtagaagcaccaccagtggaaattttgctagcctataataaatgggttaattt 397
|||| | |||||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct: 150058182 aggaactatagaagcaccaccaatggaaactttgctagcctatgataaatgggttaattt 150058123
Query: 398 atgtaaca 405
||||||||
Sbjct: 150058122 atgtaaca 150058115
>Sscrofa_Chr06
|| Length = 157765593
Score = 285 bits (144), Expect = 1e-74
Identities = 250/287 (87%), Gaps = 20/287 (6%)
Strand = Plus / Minus
Query: 120 ttatggtgcttccctcaggaaaatggtgaagaaaattgaaatcagtcagcacgccaagta 179
|||||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 12318144 ttatggtgcttctctcaggaaaatggtgatgaaaattgaaatcagccagcatgccaagta 12318085
Query: 180 cacttgctcc-ttctgtggcaaaaccaagatgaagagacgagctgtgggcatctggcact 238
|||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 12318084 cacttgctcccttctgtggcaaaaccaagatgaagggaagagctgtgggcatctggcact 12318025
Query: 239 gtggttcctgcatgaaaacggtagctggtggtgcctggacctacaacaccacttctgctg 298
|||||||||| | ||||| ||||||||||||||||||||||||| |||||||||| ||
Sbjct: 12318024 gtggttcctgtaggaaaatggtagctggtggtgcctggacctaccacaccacttccact- 12317966
Query: 299 tcacagtaaagtctgccatcagaagactgaaggaattgaaggaccagtagaagcaccacc 358
||||||||| |||||||||||| ||| ||||||||||||||||||||| |
Sbjct: 12317965 ----------gtctgccattagaagactgaagaaatggaaggaccagtagaagcaccaac 12317916
Query: 359 agtggaaattttgctagcctataataaatgggttaatttatgtaaca 405
| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 12317915 attggaa--------agcctataataaatgggttaatttatgtaaca 12317877
>Sscrofa_Chr09
|| Length = 153670197
Score = 278 bits (140), Expect = 3e-72
Identities = 209/232 (90%)
Strand = Plus / Minus
Query: 38 gctctctgggctcggaccgggtttgcggcaaaatggccaaacgcaccaagaaggttggaa 97
|||||||||||||||||| ||||||| || |||||||||||| |||||||||||||||||
Sbjct: 40348360 gctctctgggctcggaccaggtttgcagcgaaatggccaaacacaccaagaaggttggaa 40348301
Query: 98 tcgtgggcaaatacgggacccgttatggtgcttccctcaggaaaatggtgaagaaaattg 157
|| |||| ||||| | ||| ||| |||||||||||||||| ||||||||||||||||||
Sbjct: 40348300 tcatgggtaaatatagcacctgttgtggtgcttccctcaggtaaatggtgaagaaaattg 40348241
Query: 158 aaatcagtcagcacgccaagtacacttgctccttctgtggcaaaaccaagatgaagagac 217
||| | ||||| |||||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct: 40348240 aaaaaggccagcaagccaagtacacttgcttcttctgtgggaaaaccaagatgaagagcc 40348181
Query: 218 gagctgtgggcatctggcactgtggttcctgcatgaaaacggtagctggtgg 269
||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 40348180 gagctgtgggcatctggcactgtggttcctgtaccaaaacggtagctggtgg 40348129
Score = 149 bits (75), Expect = 2e-33
Identities = 182/217 (83%), Gaps = 8/217 (3%)
Strand = Plus / Plus
Query: 183 ttgctccttctgtggcaaaaccaagatgaagagacgagctgtgggcatctggcactgtgg 242
||||||||||||||| ||||| ||| |||||||| |||||||||||||| ||||||||||
Sbjct: 44926936 ttgctccttctgtggtaaaactaag-tgaagagatgagctgtgggcatcgggcactgtgg 44926994
Query: 243 ttcctgcatgaaaacggtagctggtggtgcctggacctacaacaccacttctgctgtcac 302
|||| || ||||| | ||||||||| ||||||||||||||||||||| ||
Sbjct: 44926995 ctcctccacgaaaagagcagctggtgg-------acctacaacaccacttctgctatcga 44927047
Query: 303 agtaaagtctgccatcagaagactgaaggaattgaaggaccagtagaagcaccaccagtg 362
||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||| ||
Sbjct: 44927048 agtaaagtctgccatcacaagactgaaggaattgaagagtcagtagaaacacctccattg 44927107
Query: 363 gaaattttgctagcctataataaatgggttaatttat 399
|||| |||||||||| ||| |||||| | ||||||
Sbjct: 44927108 gaaacattgctagcctgtaaccaatgggcttatttat 44927144
>Sscrofa_Chr01
|| Length = 315321322
Score = 190 bits (96), Expect = 5e-46
Identities = 207/240 (86%), Gaps = 3/240 (1%)
Strand = Plus / Plus
Query: 163 agtcagcacgccaagtacacttgctccttctgtggcaaaaccaagatgaagagacgagct 222
||||||||||| ||||||| | ||||| |||||||||||||||||| ||||| || |
Sbjct: 50478871 agtcagcacgctgagtacacccgacccttcagtggcaaaaccaagatgatgagacaagtt 50478930
Query: 223 gtgggcatctggcactgtggttcctgcatgaaaacggtagctggtggtgcctggacctac 282
||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 50478931 gtgggcatctggcaccgtggttcctgcatg-aaacggaagctggtggtgcctggacctac 50478989
Query: 283 aacaccacttctgctgtcacagtaaagtctgccatcagaagactgaaggaattgaaggac 342
| |||||||||||| ||| || ||| ||| |||| ||||| |||| |||| |||||||
Sbjct: 50478990 accaccacttctgccatcatag-gaagcctgtcatccgaagaatgaa-gaatggaaggac 50479047
Query: 343 cagtagaagcaccaccagtggaaattttgctagcctataataaatgggttaatttatgta 402
||||||||| |||| | | || || |||||||| |||||||||||||||||||||||||
Sbjct: 50479048 cagtagaagagccactatttgacatgttgctagcttataataaatgggttaatttatgta 50479107
Score = 60.0 bits (30), Expect = 1e-06
Identities = 101/122 (82%), Gaps = 7/122 (5%)
Strand = Plus / Plus
Query: 133 ctcaggaaaatggtgaagaaaattgaaatcagtcagcacgccaagta----cacttgctc 188
||||||||||||||||||||| |||| |||| | |||||||||||| || |||||
Sbjct: 84210548 ctcaggaaaatggtgaagaaatttgagatcaacctgcacgccaagtaagtacatgtgctc 84210607
Query: 189 cttctgtggcaaaaccaagatgaagagacgagctg--tgggcatctggcactgtggttcc 246
||||||||||||| | ||||||||| |||||| ||||| |||||||||||||| ||
Sbjct: 84210608 tttctgtggcaaaaatgaaatgaagagatgagctgcctgggc-tctggcactgtggtgcc 84210666
Query: 247 tg 248
||
Sbjct: 84210667 tg 84210668
>Sscrofa_Chr08
|| Length = 148491826
Score = 159 bits (80), Expect = 2e-36
Identities = 162/188 (86%), Gaps = 1/188 (0%)
Strand = Plus / Plus
Query: 130 tccctcaggaaaatggtgaagaaaattgaaatcagtcagcacgccaagtacacttgctcc 189
|||| |||| ||||||||| | || ||||||||||||||| | ||| ||| ||||||
Sbjct: 32468803 tcccacagggaaatggtgagggaagctgaaatcagtcagcatactaagcacatgtgctcc 32468862
Query: 190 ttctgtggcaaaaccaagatgaagagacgagctgtgggcatctggcactgtggttcctgc 249
||| ||||||| ||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct: 32468863 ttccacagcaaaac-aaggtgaagaaacgagctgtgggcatctggcactgtggttcctac 32468921
Query: 250 atgaaaacggtagctggtggtgcctggacctacaacaccacttctgctgtcacagtaaag 309
| |||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 32468922 aagaaaacagtagctggtggtgcctagacctacaacaccacttctgccatcacagtaaag 32468981
Query: 310 tctgccat 317
|||||||
Sbjct: 32468982 cctgccat 32468989
>Sscrofa_Chr10
|| Length = 79102373
Score = 89.7 bits (45), Expect = 1e-15
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 133 ctcaggaaaatggtgaagaaaattgaaatcagtcagcacgccaagtacacttgctccttc 192
||||||||||||||||||||||||||||||| ||||| ||||||| || || | ||||
Sbjct: 21571878 ctcaggaaaatggtgaagaaaattgaaatcaaccagcataccaagtagacctggttcttc 21571937
Query: 193 tgtggcaaaaccaagatgaagagacgagc 221
| ||||||||||||||| |||||| ||||
Sbjct: 21571938 tctggcaaaaccaagataaagagatgagc 21571966
Score = 81.8 bits (41), Expect = 3e-13
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 133 ctcaggaaaatggtgaagaaaattgaaatcagtcagcacgccaagtacacttgctccttc 192
||||||||||||||||||||||||||||||| ||||| ||||||| || || | ||||
Sbjct: 21397586 ctcaggaaaatggtgaagaaaattgaaatcaaccagcataccaagtagacctggttcttc 21397527
Query: 193 tgtggcaaaaccaagatgaagagacgagc 221
| |||||||||||||| |||||| ||||
Sbjct: 21397526 tccggcaaaaccaagataaagagatgagc 21397498
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 11,988,789
Number of extensions: 348
Number of successful extensions: 348
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 17
Length of query: 462
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 441
Effective length of database: 2,808,413,156
Effective search space: 1238510201796
Effective search space used: 1238510201796
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)