Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012491
(940 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536063.1| PREDICTED: similar to 60S ribosomal protein L37... 191 9e-49
Alignment gi|XP_848711.1| PREDICTED: similar to 60S ribosomal protein L37... 188 6e-48
Alignment gi|XP_851214.1| PREDICTED: similar to 60S ribosomal protein L37... 187 2e-47
Alignment gi|XP_539441.1| PREDICTED: similar to 60S ribosomal protein L37... 168 8e-42
>ref|XP_536063.1| PREDICTED: similar to 60S ribosomal protein L37a [Canis
familiaris].
Length = 92
Score = 191 bits (485), Expect = 9e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 37 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 216
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 217 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 312
MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
>ref|XP_848711.1| PREDICTED: similar to 60S ribosomal protein L37a [Canis
familiaris].
Length = 92
Score = 188 bits (478), Expect = 6e-48
Identities = 91/92 (98%), Positives = 91/92 (98%)
Frame = +1
Query: 37 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 216
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 217 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 312
MKTVAGGAWTYNTTSAVTVKSA RRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSANRRLKELKDQ 92
>ref|XP_851214.1| PREDICTED: similar to 60S ribosomal protein L37a [Canis
familiaris].
Length = 92
Score = 187 bits (474), Expect = 2e-47
Identities = 90/92 (97%), Positives = 91/92 (98%)
Frame = +1
Query: 37 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 216
MAK TKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKCTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 217 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 312
MKT+AGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTMAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
>ref|XP_539441.1| PREDICTED: similar to 60S ribosomal protein L37a [Canis
familiaris].
Length = 92
Score = 168 bits (425), Expect = 8e-42
Identities = 81/92 (88%), Positives = 83/92 (90%)
Frame = +1
Query: 37 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 216
MA RTKK+ IVGKY TRYGASLRKM K IEISQHAKYTCSFCGKTKMKRR VGIW CGSC
Sbjct: 1 MANRTKKIRIVGKYRTRYGASLRKMEKMIEISQHAKYTCSFCGKTKMKRRTVGIWRCGSC 60
Query: 217 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 312
M TVAGG WTYN+TSAVTVKSAIRRLKELKDQ
Sbjct: 61 MMTVAGGTWTYNSTSAVTVKSAIRRLKELKDQ 92
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,751,790
Number of extensions: 743733
Number of successful extensions: 2004
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2003
Number of HSP's successfully gapped: 4
Length of query: 313
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 210
Effective length of database: 15,440,896
Effective search space: 3242588160
Effective search space used: 3242588160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012491
(940 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030180.1| 60S ribosomal protein L37a [Bos taurus]. 191 8e-49
Alignment gi|XP_002697942.1| PREDICTED: ribosomal protein L37a-like [Bos ... 97 2e-20
Alignment gi|XP_002703117.1| PREDICTED: ribosomal protein L37a-like [Bos ... 97 2e-20
>ref|NP_001030180.1| 60S ribosomal protein L37a [Bos taurus].
Length = 92
Score = 191 bits (485), Expect = 8e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 37 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 216
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 217 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 312
MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
>ref|XP_002697942.1| PREDICTED: ribosomal protein L37a-like [Bos taurus].
Length = 111
Score = 97.1 bits (240), Expect = 2e-20
Identities = 54/87 (62%), Positives = 60/87 (68%)
Frame = +1
Query: 31 GKMAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCG 210
G + K T KV IVGK+GT Y ASL K VKK E SQHAK TCSFCGKTK KRRAVG
Sbjct: 19 GYLVKCTNKVRIVGKHGTCYDASLSKPVKKTETSQHAKQTCSFCGKTK-KRRAVG----- 72
Query: 211 SCMKTVAGGAWTYNTTSAVTVKSAIRR 291
+GGAWT+ TTSA+TVK+A R
Sbjct: 73 -----TSGGAWTFTTTSAITVKAASER 94
>ref|XP_002703117.1| PREDICTED: ribosomal protein L37a-like [Bos taurus].
Length = 111
Score = 97.1 bits (240), Expect = 2e-20
Identities = 54/87 (62%), Positives = 60/87 (68%)
Frame = +1
Query: 31 GKMAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCG 210
G + K T KV IVGK+GT Y ASL K VKK E SQHAK TCSFCGKTK KRRAVG
Sbjct: 19 GYLVKCTNKVRIVGKHGTCYDASLSKPVKKTETSQHAKQTCSFCGKTK-KRRAVG----- 72
Query: 211 SCMKTVAGGAWTYNTTSAVTVKSAIRR 291
+GGAWT+ TTSA+TVK+A R
Sbjct: 73 -----TSGGAWTFTTTSAITVKAASER 94
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,592,839
Number of extensions: 739436
Number of successful extensions: 1890
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1884
Number of HSP's successfully gapped: 3
Length of query: 313
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,306,398
Effective search space: 3018649978
Effective search space used: 3018649978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012491
(940 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359690.1| PREDICTED: 60S ribosomal protein L37a-like i... 191 5e-49
Alignment gi|XP_003359691.1| PREDICTED: 60S ribosomal protein L37a-like i... 191 7e-49
Alignment gi|XP_003133167.1| PREDICTED: 60S ribosomal protein L37a-like [... 165 3e-41
>ref|XP_003359690.1| PREDICTED: 60S ribosomal protein L37a-like isoform 1 [Sus scrofa].
Length = 92
Score = 191 bits (485), Expect = 5e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 37 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 216
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 217 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 312
MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
>ref|XP_003359691.1| PREDICTED: 60S ribosomal protein L37a-like isoform 2 [Sus scrofa].
Length = 101
Score = 191 bits (484), Expect = 7e-49
Identities = 93/101 (92%), Positives = 94/101 (93%)
Frame = +1
Query: 10 LGSDRVCGKMAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRA 189
+G G AKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRA
Sbjct: 1 MGERGAGGGWAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRA 60
Query: 190 VGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 312
VGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 VGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 101
>ref|XP_003133167.1| PREDICTED: 60S ribosomal protein L37a-like [Sus scrofa].
Length = 91
Score = 165 bits (418), Expect = 3e-41
Identities = 82/92 (89%), Positives = 83/92 (90%)
Frame = +1
Query: 37 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 216
MAK TK VGIVGKY T YGAS RKMVKKIEISQH KYTCSFCGKTKMKRRA GIWHCGSC
Sbjct: 1 MAKSTK-VGIVGKYRTCYGASFRKMVKKIEISQHTKYTCSFCGKTKMKRRAAGIWHCGSC 59
Query: 217 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 312
MK VAGGAWTYNTTSAV VKSAIR+LKELKDQ
Sbjct: 60 MKMVAGGAWTYNTTSAVMVKSAIRQLKELKDQ 91
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,730,926
Number of extensions: 483466
Number of successful extensions: 1258
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1258
Number of HSP's successfully gapped: 3
Length of query: 313
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 214
Effective length of database: 8,879,129
Effective search space: 1900133606
Effective search space used: 1900133606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012491
(940 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001004924.1| PREDICTED: 60S ribosomal protein L37a-like [... 191 7e-49
Alignment gi|XP_911870.1| PREDICTED: 60S ribosomal protein L37a-like [Mus... 191 7e-49
Alignment gi|NP_033110.1| 60S ribosomal protein L37a [Mus musculus]. 191 7e-49
Alignment gi|XP_001480957.1| PREDICTED: 60S ribosomal protein L37a [Mus m... 187 8e-48
Alignment gi|XP_003086624.1| PREDICTED: 60S ribosomal protein L37a [Mus m... 187 8e-48
>ref|XP_001004924.1| PREDICTED: 60S ribosomal protein L37a-like [Mus musculus].
Length = 92
Score = 191 bits (485), Expect = 7e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 37 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 216
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 217 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 312
MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
>ref|XP_911870.1| PREDICTED: 60S ribosomal protein L37a-like [Mus musculus].
Length = 92
Score = 191 bits (485), Expect = 7e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 37 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 216
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 217 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 312
MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
>ref|NP_033110.1| 60S ribosomal protein L37a [Mus musculus].
Length = 92
Score = 191 bits (485), Expect = 7e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 37 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 216
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 217 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 312
MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
>ref|XP_001480957.1| PREDICTED: 60S ribosomal protein L37a [Mus musculus].
Length = 101
Score = 187 bits (476), Expect = 8e-48
Identities = 89/94 (94%), Positives = 93/94 (98%)
Frame = +1
Query: 37 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 216
MA+RTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAERTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 217 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ*K 318
+KTVAGGAWTYNTTSA+TVKSA+RRLKELKDQ K
Sbjct: 61 IKTVAGGAWTYNTTSAITVKSAVRRLKELKDQQK 94
>ref|XP_003086624.1| PREDICTED: 60S ribosomal protein L37a [Mus musculus].
Length = 101
Score = 187 bits (476), Expect = 8e-48
Identities = 89/94 (94%), Positives = 93/94 (98%)
Frame = +1
Query: 37 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 216
MA+RTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAERTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 217 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ*K 318
+KTVAGGAWTYNTTSA+TVKSA+RRLKELKDQ K
Sbjct: 61 IKTVAGGAWTYNTTSAITVKSAVRRLKELKDQQK 94
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,938,637
Number of extensions: 643825
Number of successful extensions: 1761
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1758
Number of HSP's successfully gapped: 5
Length of query: 313
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 212
Effective length of database: 12,583,923
Effective search space: 2667791676
Effective search space used: 2667791676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012491
(940 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000989.1| 60S ribosomal protein L37a [Homo sapiens]. 191 8e-49
>ref|NP_000989.1| 60S ribosomal protein L37a [Homo sapiens].
Length = 92
Score = 191 bits (485), Expect = 8e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 37 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 216
MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 217 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 312
MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ 92
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,386,526
Number of extensions: 744207
Number of successful extensions: 2096
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2091
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,934,836
Effective search space: 3151250396
Effective search space used: 3151250396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012491
(940 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 507 e-141
gb|GL893735.2| Sus scrofa unplaced genomic scaffold ChrUScaf1620 428 e-117
Sscrofa_Chr05 416 e-114
Sscrofa_Chr13 317 6e-84
Sscrofa_Chr06 285 2e-74
Sscrofa_Chr09 278 5e-72
Sscrofa_Chr01 190 9e-46
Sscrofa_Chr08 159 3e-36
Sscrofa_Chr10 90 3e-15
>Sscrofa_Chr14
|| Length = 153851969
Score = 507 bits (256), Expect = e-141
Identities = 327/350 (93%), Gaps = 3/350 (0%)
Strand = Plus / Plus
Query: 26 tttgcggcaaaatggccaaacgcaccaagaaggttggaatcgtgggcaaatacgggaccc 85
|||| ||||||||||||||| |||||||| || ||||||||||| |||||| |||||
Sbjct: 100785646 tttgtggcaaaatggccaaaagcaccaag---gtcggaatcgtgggtaaatacaggacct 100785702
Query: 86 gttatggtgcttccctcaggaaaatggtgaagaaaattgaaatcagtcagcacgccaagt 145
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 100785703 gttatggtgcttctttcaggaaaatggtgaagaaaattgaaatcagtcagcacaccaagt 100785762
Query: 146 acacttgctccttctgtggcaaaaccaagatgaagagacgagctgtgggcatctggcact 205
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 100785763 acacttgctccttctgtggcaaaaccaagatgaagagacgagctgcaggcatctggcact 100785822
Query: 206 gtggttcctgcatgaaaacggtagctggtggtgcctggacctacaacaccacttctgctg 265
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 100785823 gtggttcctgcatgaaaatggtagctggtggtgcctggacctacaacaccacttctgctg 100785882
Query: 266 tcacagtaaagtctgccatcagaagactgaaggaattgaaggaccagtagaagcaccacc 325
||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 100785883 tcatggtaaagtctgccatcagacaactgaaggaattgaaggaccagtagaagcactacc 100785942
Query: 326 agtggaaattttgctagcctataataaatgggttaatttatgtaacagaa 375
| |||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 100785943 aatggaaactttgctagcctataataaataggttaatttatgtaacagaa 100785992
Score = 71.9 bits (36), Expect = 6e-10
Identities = 95/112 (84%), Gaps = 2/112 (1%)
Strand = Plus / Minus
Query: 105 gaaaatggtgaagaaaattgaaatcagtcagcacgccaagtacacttgctccttctg-tg 163
|||||||||||||||| ||||| |||| ||||| |||||| ||||||||| | |||| |
Sbjct: 77811803 gaaaatggtgaagaaagttgaagtcagccagcatgccaaggacacttgcttc-tctgacg 77811745
Query: 164 gcaaaaccaagatgaagagacgagctgtgggcatctggcactgtggttcctg 215
|||| |||||||||||||| ||||| |||| |||||| ||||| ||||||
Sbjct: 77811744 tcaaatccaagatgaagagatgagctttggggttctggcgctgtgattcctg 77811693
>gb|GL893735.2| Sus scrofa unplaced genomic scaffold ChrUScaf1620
Length = 145580
Score = 428 bits (216), Expect = e-117
Identities = 355/404 (87%), Gaps = 13/404 (3%)
Strand = Plus / Minus
Query: 29 gcggcaaaatggccaaacgcaccaagaaggttggaatcgtgggcaaatacgggacccgtt 88
||||||| |||||||| ||||||||| ||| ||||| ||||| |||||||||||| ||
Sbjct: 93969 gcggcaacctggccaaatgcaccaagatggtcggaattgtgggtaaatacgggacctatt 93910
Query: 89 atggtgcttccctcaggaaaatggtgaagaaaattgaaatcagtcagcacgccaagtaca 148
|| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 93909 atcgtgcttccctcaggaaaatggtgaagaaaattgaaatcagctagcacaccaagtaca 93850
Query: 149 cttgctccttctgtggcaaaaccaagatgaagagacgagctgtgggcatctggcactgtg 208
||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||
Sbjct: 93849 cttgctccttctgtggcaaaaccaagatgaagagatgagcgatgggcatctggcacggtg 93790
Query: 209 gttcctgcatgaaaacggtagctggtggtgcctggacctacaacaccacttctgctgtca 268
|||||||||||||||| |||||||||||| |||||||| |||||||||||||||| ||||
Sbjct: 93789 gttcctgcatgaaaacagtagctggtggtacctggacccacaacaccacttctgccgtca 93730
Query: 269 cagtaaagtctgccatcagaagactgaaggaattgaaggaccagtagaagcaccaccagt 328
|||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 93729 cagtaaagtctgccatcagaagactgaaggaactgcaggaccagtagaagcacc------ 93676
Query: 329 ggaaattttgctagcctataataaatgggttaatttatgtaacagaactactttggtttg 388
| |||||||||||| ||||||||||||| ||| |||| |||| |||||||||
Sbjct: 93675 -------tcgctagcctataacaaatgggttaattcatggaacaaaactgctttggttta 93623
Query: 389 ttgacattcttatttgcattaattttgctttcttaaaaaagact 432
| || | |||| |||||||||||||||||||| ||||||||||
Sbjct: 93622 ataacctacttacttgcattaattttgctttctaaaaaaagact 93579
>Sscrofa_Chr05
|| Length = 111506441
Score = 416 bits (210), Expect = e-114
Identities = 328/366 (89%), Gaps = 1/366 (0%)
Strand = Plus / Minus
Query: 5 gctctctgggctcggaccgggtttgcggcaaaatggccaaacgcaccaagaaggttggaa 64
|||||||||||| | ||| |||| |||||| |||||||||| |||||||||||| |||
Sbjct: 15606568 gctctctgggcttgaaccaagttttcggcaacatggccaaacacaccaagaaggtcagaa 15606509
Query: 65 tcgtgggcaaatacgggacccgttatggtgcttccctcaggaaaatggtgaagaaaattg 124
|| |||| |||||| ||| |||||||| |||||||||||||||||||| |||||||| ||
Sbjct: 15606508 tcatgggtaaatacaggatccgttatgatgcttccctcaggaaaatggcgaagaaaaatg 15606449
Query: 125 aaatcagtcagcacgccaagtacacttgctccttctgtggcaaaaccaagatgaagagac 184
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 15606448 aaatcagccagcataccaagtacacttgctccatctgtggcaaaaccaagatgaagagat 15606389
Query: 185 gagctgtgggcatctggcactgtggttcctgcatgaaaacggtagctggtggtgcctgga 244
||||||||||||| ||| ||||||||||||||||| |||| ||||||||| |||| ||||
Sbjct: 15606388 gagctgtgggcat-tgggactgtggttcctgcatggaaactgtagctggtagtgcttgga 15606330
Query: 245 cctacaacaccacttctgctgtcacagtaaagtctgccatcagaagactgaaggaattga 304
|||||||||||||| | || ||||||||||||||||||||| ||||||||||||||| |
Sbjct: 15606329 cctacaacaccactcccgccatcacagtaaagtctgccatcaaaagactgaaggaattaa 15606270
Query: 305 aggaccagtagaagcaccaccagtggaaattttgctagcctataataaatgggttaattt 364
|||||||||||||||||||||| |||||| || |||||||||||||||| |||||||||
Sbjct: 15606269 aggaccagtagaagcaccaccattggaaaccttactagcctataataaataggttaattt 15606210
Query: 365 atgtaa 370
||||||
Sbjct: 15606209 atgtaa 15606204
>Sscrofa_Chr13
|| Length = 218635234
Score = 317 bits (160), Expect = 6e-84
Identities = 317/368 (86%), Gaps = 16/368 (4%)
Strand = Plus / Minus
Query: 5 gctctctgggctcggaccgggtttgcggcaaaatggccaaacgcaccaagaaggttggaa 64
||||||| |||| || || |||||| |||||| ||| |||| ||| |||||||| ||||
Sbjct: 150058466 gctctctaggcttggtccaggtttgtggcaaagtggtcaaaggcat-aagaaggtcggaa 150058408
Query: 65 tcgtgggcaaatacgggacccgttatggtgcttccctcaggaaaatggtgaagaaaattg 124
|| || | ||||| |||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 150058407 tcatgagtaaatatgggatccgttatggtgcttccctcaggaaa-tggtgaaaaaaatta 150058349
Query: 125 aaatcagtcagcacgccaagtacacttgctccttctgtggcaaaaccaagatgaagagac 184
||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 150058348 aaatcagccagcaagccaagtatacttgcttcttctgtggcaaaaccaagatgaagag-- 150058291
Query: 185 gagctgtgggcatctggcactgtggttcctgcatgaaaacggtagctggtggtgcctgga 244
|||||||||||||||| ||||||||||||| ||||||||||||| ||||||
Sbjct: 150058290 ---------gcatctggcactgtggctcctgcatgaaaatggtagctggtggtacctgga 150058240
Query: 245 cctacaacaccacttctgctgtcacagtaaagtctgccatcagaagactgaaggaattga 304
|||||| |||||||||| ||||||||||||| |||||||||||||| ||| ||||||
Sbjct: 150058239 cctaca---ccacttctgccatcacagtaaagtcagccatcagaagactcaagaaattga 150058183
Query: 305 aggaccagtagaagcaccaccagtggaaattttgctagcctataataaatgggttaattt 364
|||| | |||||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct: 150058182 aggaactatagaagcaccaccaatggaaactttgctagcctatgataaatgggttaattt 150058123
Query: 365 atgtaaca 372
||||||||
Sbjct: 150058122 atgtaaca 150058115
>Sscrofa_Chr06
|| Length = 157765593
Score = 285 bits (144), Expect = 2e-74
Identities = 250/287 (87%), Gaps = 20/287 (6%)
Strand = Plus / Minus
Query: 87 ttatggtgcttccctcaggaaaatggtgaagaaaattgaaatcagtcagcacgccaagta 146
|||||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 12318144 ttatggtgcttctctcaggaaaatggtgatgaaaattgaaatcagccagcatgccaagta 12318085
Query: 147 cacttgctcc-ttctgtggcaaaaccaagatgaagagacgagctgtgggcatctggcact 205
|||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 12318084 cacttgctcccttctgtggcaaaaccaagatgaagggaagagctgtgggcatctggcact 12318025
Query: 206 gtggttcctgcatgaaaacggtagctggtggtgcctggacctacaacaccacttctgctg 265
|||||||||| | ||||| ||||||||||||||||||||||||| |||||||||| ||
Sbjct: 12318024 gtggttcctgtaggaaaatggtagctggtggtgcctggacctaccacaccacttccact- 12317966
Query: 266 tcacagtaaagtctgccatcagaagactgaaggaattgaaggaccagtagaagcaccacc 325
||||||||| |||||||||||| ||| ||||||||||||||||||||| |
Sbjct: 12317965 ----------gtctgccattagaagactgaagaaatggaaggaccagtagaagcaccaac 12317916
Query: 326 agtggaaattttgctagcctataataaatgggttaatttatgtaaca 372
| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 12317915 attggaa--------agcctataataaatgggttaatttatgtaaca 12317877
>Sscrofa_Chr09
|| Length = 153670197
Score = 278 bits (140), Expect = 5e-72
Identities = 209/232 (90%)
Strand = Plus / Minus
Query: 5 gctctctgggctcggaccgggtttgcggcaaaatggccaaacgcaccaagaaggttggaa 64
|||||||||||||||||| ||||||| || |||||||||||| |||||||||||||||||
Sbjct: 40348360 gctctctgggctcggaccaggtttgcagcgaaatggccaaacacaccaagaaggttggaa 40348301
Query: 65 tcgtgggcaaatacgggacccgttatggtgcttccctcaggaaaatggtgaagaaaattg 124
|| |||| ||||| | ||| ||| |||||||||||||||| ||||||||||||||||||
Sbjct: 40348300 tcatgggtaaatatagcacctgttgtggtgcttccctcaggtaaatggtgaagaaaattg 40348241
Query: 125 aaatcagtcagcacgccaagtacacttgctccttctgtggcaaaaccaagatgaagagac 184
||| | ||||| |||||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct: 40348240 aaaaaggccagcaagccaagtacacttgcttcttctgtgggaaaaccaagatgaagagcc 40348181
Query: 185 gagctgtgggcatctggcactgtggttcctgcatgaaaacggtagctggtgg 236
||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 40348180 gagctgtgggcatctggcactgtggttcctgtaccaaaacggtagctggtgg 40348129
Score = 149 bits (75), Expect = 3e-33
Identities = 182/217 (83%), Gaps = 8/217 (3%)
Strand = Plus / Plus
Query: 150 ttgctccttctgtggcaaaaccaagatgaagagacgagctgtgggcatctggcactgtgg 209
||||||||||||||| ||||| ||| |||||||| |||||||||||||| ||||||||||
Sbjct: 44926936 ttgctccttctgtggtaaaactaag-tgaagagatgagctgtgggcatcgggcactgtgg 44926994
Query: 210 ttcctgcatgaaaacggtagctggtggtgcctggacctacaacaccacttctgctgtcac 269
|||| || ||||| | ||||||||| ||||||||||||||||||||| ||
Sbjct: 44926995 ctcctccacgaaaagagcagctggtgg-------acctacaacaccacttctgctatcga 44927047
Query: 270 agtaaagtctgccatcagaagactgaaggaattgaaggaccagtagaagcaccaccagtg 329
||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||| ||
Sbjct: 44927048 agtaaagtctgccatcacaagactgaaggaattgaagagtcagtagaaacacctccattg 44927107
Query: 330 gaaattttgctagcctataataaatgggttaatttat 366
|||| |||||||||| ||| |||||| | ||||||
Sbjct: 44927108 gaaacattgctagcctgtaaccaatgggcttatttat 44927144
>Sscrofa_Chr01
|| Length = 315321322
Score = 190 bits (96), Expect = 9e-46
Identities = 207/240 (86%), Gaps = 3/240 (1%)
Strand = Plus / Plus
Query: 130 agtcagcacgccaagtacacttgctccttctgtggcaaaaccaagatgaagagacgagct 189
||||||||||| ||||||| | ||||| |||||||||||||||||| ||||| || |
Sbjct: 50478871 agtcagcacgctgagtacacccgacccttcagtggcaaaaccaagatgatgagacaagtt 50478930
Query: 190 gtgggcatctggcactgtggttcctgcatgaaaacggtagctggtggtgcctggacctac 249
||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 50478931 gtgggcatctggcaccgtggttcctgcatg-aaacggaagctggtggtgcctggacctac 50478989
Query: 250 aacaccacttctgctgtcacagtaaagtctgccatcagaagactgaaggaattgaaggac 309
| |||||||||||| ||| || ||| ||| |||| ||||| |||| |||| |||||||
Sbjct: 50478990 accaccacttctgccatcatag-gaagcctgtcatccgaagaatgaa-gaatggaaggac 50479047
Query: 310 cagtagaagcaccaccagtggaaattttgctagcctataataaatgggttaatttatgta 369
||||||||| |||| | | || || |||||||| |||||||||||||||||||||||||
Sbjct: 50479048 cagtagaagagccactatttgacatgttgctagcttataataaatgggttaatttatgta 50479107
>Sscrofa_Chr08
|| Length = 148491826
Score = 159 bits (80), Expect = 3e-36
Identities = 162/188 (86%), Gaps = 1/188 (0%)
Strand = Plus / Plus
Query: 97 tccctcaggaaaatggtgaagaaaattgaaatcagtcagcacgccaagtacacttgctcc 156
|||| |||| ||||||||| | || ||||||||||||||| | ||| ||| ||||||
Sbjct: 32468803 tcccacagggaaatggtgagggaagctgaaatcagtcagcatactaagcacatgtgctcc 32468862
Query: 157 ttctgtggcaaaaccaagatgaagagacgagctgtgggcatctggcactgtggttcctgc 216
||| ||||||| ||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct: 32468863 ttccacagcaaaac-aaggtgaagaaacgagctgtgggcatctggcactgtggttcctac 32468921
Query: 217 atgaaaacggtagctggtggtgcctggacctacaacaccacttctgctgtcacagtaaag 276
| |||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 32468922 aagaaaacagtagctggtggtgcctagacctacaacaccacttctgccatcacagtaaag 32468981
Query: 277 tctgccat 284
|||||||
Sbjct: 32468982 cctgccat 32468989
>Sscrofa_Chr10
|| Length = 79102373
Score = 89.7 bits (45), Expect = 3e-15
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 100 ctcaggaaaatggtgaagaaaattgaaatcagtcagcacgccaagtacacttgctccttc 159
||||||||||||||||||||||||||||||| ||||| ||||||| || || | ||||
Sbjct: 21571878 ctcaggaaaatggtgaagaaaattgaaatcaaccagcataccaagtagacctggttcttc 21571937
Query: 160 tgtggcaaaaccaagatgaagagacgagc 188
| ||||||||||||||| |||||| ||||
Sbjct: 21571938 tctggcaaaaccaagataaagagatgagc 21571966
Score = 81.8 bits (41), Expect = 6e-13
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 100 ctcaggaaaatggtgaagaaaattgaaatcagtcagcacgccaagtacacttgctccttc 159
||||||||||||||||||||||||||||||| ||||| ||||||| || || | ||||
Sbjct: 21397586 ctcaggaaaatggtgaagaaaattgaaatcaaccagcataccaagtagacctggttcttc 21397527
Query: 160 tgtggcaaaaccaagatgaagagacgagc 188
| |||||||||||||| |||||| ||||
Sbjct: 21397526 tccggcaaaaccaagataaagagatgagc 21397498
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,312,554
Number of extensions: 340
Number of successful extensions: 340
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 17
Length of query: 940
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 919
Effective length of database: 2,808,413,156
Effective search space: 2580931690364
Effective search space used: 2580931690364
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)