Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012506
(1445 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533236.2| PREDICTED: similar to Delta(14)-sterol reductas... 634 0.0
Alignment gi|XP_547512.2| PREDICTED: similar to Lamin B receptor (Integra... 407 e-113
Alignment gi|XP_540796.2| PREDICTED: similar to 7-dehydrocholesterol redu... 220 3e-57
>ref|XP_533236.2| PREDICTED: similar to Delta(14)-sterol reductase (C-14 sterol
reductase) (Sterol C14-reductase) (Delta14-SR)
(Transmembrane 7 superfamily member 2) (Another new gene
1 protein) (Putative sterol reductase SR-1) [Canis
familiaris].
Length = 418
Score = 634 bits (1634), Expect = 0.0
Identities = 322/418 (77%), Positives = 328/418 (78%)
Frame = +3
Query: 144 MAPPQGPRAPLEFXXXXXXXXXXXXXXXTMFHLLLAARSXXXXXXXXXXXXXXXXXXWSP 323
MA PQG RAPLEF TMFHLLL RS WSP
Sbjct: 1 MASPQGSRAPLEFGGPLGAAALMLLLPATMFHLLLVVRSGPARLLGPPPYLPGLQVLWSP 60
Query: 324 WALFLCLAWLGLQAALYLLPARKVAEGQELKDKRRLLYPINGFQXXXXXXXXXXXXXXXX 503
L L L WLGLQAALYLLPARKVAEGQELKDK RLLYPINGFQ
Sbjct: 61 RMLLLWLTWLGLQAALYLLPARKVAEGQELKDKSRLLYPINGFQALMLTALLVGLAVLAG 120
Query: 504 XXXXXXPEMLLPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGRELN 683
PEMLLPLAF+AT F+ SL LYLKALVAPASALAPGGNSGNP+YDFFLGRELN
Sbjct: 121 LPLGALPEMLLPLAFAATFTTFIFSLFLYLKALVAPASALAPGGNSGNPIYDFFLGRELN 180
Query: 684 PRICSFDFKYFCELRPGLIGWVLINLALLMQEAELRGSPSLAMWLVNGFQLLYVGDALWH 863
PR+ SFDFKYFCELRPGLIGWVLINLA+LMQEAELRGSPSLAMWLVNGFQLLYVGDALWH
Sbjct: 181 PRVWSFDFKYFCELRPGLIGWVLINLAMLMQEAELRGSPSLAMWLVNGFQLLYVGDALWH 240
Query: 864 EEAVLTTMDIIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICLINAVG 1043
EEAVLTTMDI HDGFGFMLAFGDLAWVPFTYSLQAQFLL+HPQPLGLP ASVICLINAVG
Sbjct: 241 EEAVLTTMDITHDGFGFMLAFGDLAWVPFTYSLQAQFLLHHPQPLGLPVASVICLINAVG 300
Query: 1044 YYIFRGANSQKNTFRKNPSDPRVADLETIPTATGRQLLVSGWWGMVRHPNYLGDLIMALA 1223
YYIFRGANSQKNTFRKNPSDPRVADLETIPTATGRQLLVSGWWGMVRHPNYLGDLIMALA
Sbjct: 301 YYIFRGANSQKNTFRKNPSDPRVADLETIPTATGRQLLVSGWWGMVRHPNYLGDLIMALA 360
Query: 1224 WSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLPKMACPGTNTAGGCPTEILAYGY 1397
WSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCL K P IL Y Y
Sbjct: 361 WSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLQKYGLAWHEYCRRVPYRILPYIY 418
>ref|XP_547512.2| PREDICTED: similar to Lamin B receptor (Integral nuclear envelope
inner membrane protein) (LMN2R) [Canis familiaris].
Length = 618
Score = 407 bits (1047), Expect = e-113
Identities = 208/363 (57%), Positives = 242/363 (66%), Gaps = 2/363 (0%)
Frame = +3
Query: 315 WSPWALFLCLAWLGLQAALYLLPARKVAEGQELKDKRRLLYPINGFQXXXXXXXXXXXXX 494
W A + W LQA Y+LP KV EG L D RRL Y +NGF
Sbjct: 257 WDTRAFAIYFFWFSLQALFYILPIGKVVEGMPLADGRRLKYRLNGFYAFLLTCVAVGAAL 316
Query: 495 XXXXXXXXXPEMLLPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGR 674
LPLA +A A S L ++A AP +ALAP +SGN +YDFF+GR
Sbjct: 317 CRGVELHYVYHHFLPLALAAATFAMALSTYLAVRAAWAPPAALAPA-SSGNAIYDFFIGR 375
Query: 675 ELNPRICSFDFKYFCELRPGLIGWVLINLALLMQEAEL--RGSPSLAMWLVNGFQLLYVG 848
ELNPRI +FD KYFCELRPGLIGWV++NL +L+ E +L R +PSLAM LVN FQLLYV
Sbjct: 376 ELNPRIGTFDLKYFCELRPGLIGWVVVNLVMLLAEMKLQHRAAPSLAMILVNSFQLLYVV 435
Query: 849 DALWHEEAVLTTMDIIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICL 1028
DALW+EEA+LTTMDI HDGFGFMLAFGDL WVPF YS QA +L+ HP + P AS+I
Sbjct: 436 DALWNEEALLTTMDITHDGFGFMLAFGDLVWVPFIYSFQAFYLVNHPNEVSWPMASLIIA 495
Query: 1029 INAVGYYIFRGANSQKNTFRKNPSDPRVADLETIPTATGRQLLVSGWWGMVRHPNYLGDL 1208
+ GY IFR ANSQKN FRKNP+DP++A L+TI T+TG+ LLVSGWWG VRHPNYLGDL
Sbjct: 496 LKLCGYVIFRCANSQKNAFRKNPTDPKLAHLKTIHTSTGKNLLVSGWWGFVRHPNYLGDL 555
Query: 1209 IMALAWSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLPKMACPGTNTAGGCPTEILA 1388
IMALAWSLPCG H+LPYFY++YFT LLVHREARDE+ C K P I
Sbjct: 556 IMALAWSLPCGFKHVLPYFYVIYFTVLLVHREARDERHCRKKYGLAWEKYCQRVPYRIFP 615
Query: 1389 YGY 1397
Y Y
Sbjct: 616 YVY 618
>ref|XP_540796.2| PREDICTED: similar to 7-dehydrocholesterol reductase (7-DHC
reductase) (Sterol delta-7-reductase) (Putative sterol
reductase SR-2) [Canis familiaris].
Length = 475
Score = 220 bits (560), Expect = 3e-57
Identities = 124/297 (41%), Positives = 168/297 (56%), Gaps = 13/297 (4%)
Frame = +3
Query: 534 LPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGRELNPRICS-FDFK 710
+PL + A ++ + S +K P SA +GN Y++ +G E NPRI FDFK
Sbjct: 178 IPLLWCANILGYAVSTFAMIKGYFFPTSA-KDCKFTGNFFYNYMMGIEFNPRIGKWFDFK 236
Query: 711 YFCELRPGLIGWVLINLALLMQEAELRGSPSLAMWLVNGFQLLYVGDALWHEEAVLTTMD 890
F RPG++ W LINL+ ++ EL G + AM LVN Q +YV D W+E L T+D
Sbjct: 237 LFFNGRPGIVAWTLINLSFAAKQRELHGQVTNAMVLVNILQAIYVLDFFWNETWYLKTID 296
Query: 891 IIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICLINAVGYYIFRGANS 1070
I HD FG+ L +GD W+P+ Y+LQ +L+YHP L A+ I L+ +GYYIFR AN
Sbjct: 297 ICHDHFGWYLGWGDCVWLPYLYTLQGLYLVYHPVQLSTLHATGILLLGLLGYYIFRMANH 356
Query: 1071 QKNTFRKNPS-------DPRVADLETIPTATGRQ-----LLVSGWWGMVRHPNYLGDLIM 1214
QK+ FR+ P+V +E + T+ Q LLVSG+WG+ RH NY GDL+
Sbjct: 357 QKDLFRRTDGRCLIWGRKPKV--IECMYTSADGQKHHSKLLVSGFWGVARHLNYTGDLMG 414
Query: 1215 ALAWSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLPKMACPGTNTAGGCPTEIL 1385
+LA+ L CG HLLPYFY++Y T LL HR RDE +C K P +L
Sbjct: 415 SLAYCLACGGGHLLPYFYIIYMTILLTHRCLRDEHRCANKYGSDWKRYTAAVPHRLL 471
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,406,775
Number of extensions: 1650766
Number of successful extensions: 8909
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8754
Number of HSP's successfully gapped: 3
Length of query: 481
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 374
Effective length of database: 15,307,552
Effective search space: 5725024448
Effective search space used: 5725024448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012506
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012506
(1445 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777047.2| delta(14)-sterol reductase [Bos taurus]. 632 0.0
Alignment gi|NP_001093799.1| lamin-B receptor [Bos taurus]. 400 e-111
Alignment gi|NP_001014927.1| 7-dehydrocholesterol reductase [Bos taurus]. 207 2e-53
>ref|NP_777047.2| delta(14)-sterol reductase [Bos taurus].
Length = 418
Score = 632 bits (1630), Expect = 0.0
Identities = 320/418 (76%), Positives = 329/418 (78%)
Frame = +3
Query: 144 MAPPQGPRAPLEFXXXXXXXXXXXXXXXTMFHLLLAARSXXXXXXXXXXXXXXXXXXWSP 323
MAPPQG RAPLEF TMFHLLL ARS WSP
Sbjct: 1 MAPPQGSRAPLEFGGPLGAAALMLLLPVTMFHLLLVARSGPARLLGPPPYLPGLEELWSP 60
Query: 324 WALFLCLAWLGLQAALYLLPARKVAEGQELKDKRRLLYPINGFQXXXXXXXXXXXXXXXX 503
WAL LCL WLGLQAALYLLPARKVAEGQELKDK RL YPINGFQ
Sbjct: 61 WALLLCLTWLGLQAALYLLPARKVAEGQELKDKSRLRYPINGFQALVLTALLVGLGVSAG 120
Query: 504 XXXXXXPEMLLPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGRELN 683
PEMLLPLAF+ATL AF+ SLLLYLKAL+APASALAPGGNSGN +YDFFLGRELN
Sbjct: 121 LPLSALPEMLLPLAFAATLTAFIFSLLLYLKALLAPASALAPGGNSGNLIYDFFLGRELN 180
Query: 684 PRICSFDFKYFCELRPGLIGWVLINLALLMQEAELRGSPSLAMWLVNGFQLLYVGDALWH 863
PRICSFDFKYFCELRPGLIGWVLINLALL+QEAELRGSPSLAMWLVNGFQLLYVGDALW+
Sbjct: 181 PRICSFDFKYFCELRPGLIGWVLINLALLIQEAELRGSPSLAMWLVNGFQLLYVGDALWY 240
Query: 864 EEAVLTTMDIIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICLINAVG 1043
EEAVLTTMDIIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLG P AS ICLINAVG
Sbjct: 241 EEAVLTTMDIIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGWPLASFICLINAVG 300
Query: 1044 YYIFRGANSQKNTFRKNPSDPRVADLETIPTATGRQLLVSGWWGMVRHPNYLGDLIMALA 1223
YYIFRGANSQKNTFRKNPSDPRVADLETI TATGR+LLVSGWWGMVRHPNYLGDLIMALA
Sbjct: 301 YYIFRGANSQKNTFRKNPSDPRVADLETISTATGRRLLVSGWWGMVRHPNYLGDLIMALA 360
Query: 1224 WSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLPKMACPGTNTAGGCPTEILAYGY 1397
WSLPCGV HLLPYFY LYFTALLVHRE RDE+QC K P I+ Y Y
Sbjct: 361 WSLPCGVFHLLPYFYFLYFTALLVHREDRDERQCRQKYGLAWHEYCRRVPYRIVPYIY 418
>ref|NP_001093799.1| lamin-B receptor [Bos taurus].
Length = 621
Score = 400 bits (1028), Expect = e-111
Identities = 209/363 (57%), Positives = 240/363 (66%), Gaps = 2/363 (0%)
Frame = +3
Query: 315 WSPWALFLCLAWLGLQAALYLLPARKVAEGQELKDKRRLLYPINGFQXXXXXXXXXXXXX 494
W L W LQA +LLP KV EG L D RRL Y +NGF
Sbjct: 260 WETRVFGAYLLWFLLQALFHLLPIGKVVEGTPLTDGRRLKYRLNGFYAFILTSALVGACF 319
Query: 495 XXXXXXXXXPEMLLPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGR 674
L A +A L A S+ LY +AL AP L+P +SGN +YDFF+GR
Sbjct: 320 FWNVELYYVYRHFLQFALAAILFATGLSVYLYARALKAPQDELSPA-SSGNAIYDFFIGR 378
Query: 675 ELNPRICSFDFKYFCELRPGLIGWVLINLALLMQEA--ELRGSPSLAMWLVNGFQLLYVG 848
ELNPRI +FD KYFCELRPGLIGWV+INL +L+ E + R PSLAM LVN FQLLYV
Sbjct: 379 ELNPRIGTFDLKYFCELRPGLIGWVVINLVMLLAEMKEQNRAVPSLAMILVNSFQLLYVV 438
Query: 849 DALWHEEAVLTTMDIIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICL 1028
DALW+EEA+LTTMDIIHDGFGFMLAFGDL WVPF YS QA +L+ HP L P AS+I
Sbjct: 439 DALWNEEALLTTMDIIHDGFGFMLAFGDLVWVPFIYSFQAFYLVSHPNELSWPMASLIIA 498
Query: 1029 INAVGYYIFRGANSQKNTFRKNPSDPRVADLETIPTATGRQLLVSGWWGMVRHPNYLGDL 1208
+ G+ IFR ANSQKN FRKNP+DPR+A L+TI T+TG+ LLVSGWWG VRHPNYLGDL
Sbjct: 499 LKLCGFVIFRCANSQKNAFRKNPADPRLAHLKTIHTSTGKNLLVSGWWGFVRHPNYLGDL 558
Query: 1209 IMALAWSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLPKMACPGTNTAGGCPTEILA 1388
IMALAWSLPCG +H+LPYFY++YFT LLVHREARDE C K P I+
Sbjct: 559 IMALAWSLPCGFNHILPYFYVIYFTILLVHREARDEHHCRKKYGLAWEKYCQRVPYRIVP 618
Query: 1389 YGY 1397
Y Y
Sbjct: 619 YIY 621
>ref|NP_001014927.1| 7-dehydrocholesterol reductase [Bos taurus].
Length = 475
Score = 207 bits (526), Expect = 2e-53
Identities = 116/296 (39%), Positives = 166/296 (56%), Gaps = 12/296 (4%)
Frame = +3
Query: 534 LPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGRELNPRICS-FDFK 710
+PL + A ++ + S +K + P A +GN Y++ +G E NPRI FDFK
Sbjct: 178 IPLLWCANILGYTVSTFAMVKGYLFPTDA-RECKFTGNFFYNYMMGVEFNPRIGKWFDFK 236
Query: 711 YFCELRPGLIGWVLINLALLMQEAELRGSPSLAMWLVNGFQLLYVGDALWHEEAVLTTMD 890
F RPG++ W LINL+ ++ EL G + +M LVN Q +YV D W+E L T+D
Sbjct: 237 LFFNGRPGIVAWTLINLSFAAKQQELYGHVTNSMVLVNILQAIYVLDFFWNETWYLKTID 296
Query: 891 IIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICLINAVGYYIFRGANS 1070
I HD FG+ L +GD W+P+ Y+LQ +L+YHP L A + L+ +GYYIFR N
Sbjct: 297 ICHDHFGWYLGWGDCVWLPYLYTLQGLYLVYHPVQLPTYYALGVLLLGLLGYYIFRMTNH 356
Query: 1071 QKNTFRKNPS-------DPRVADLETIPTATGR----QLLVSGWWGMVRHPNYLGDLIMA 1217
QK+ FR+ P+ + + +A G+ +LLVSG+WG+ RH NY GDL+ +
Sbjct: 357 QKDLFRRTDGRCLIWGRKPKAIEC-SYTSADGQRHHSKLLVSGFWGVARHFNYTGDLMGS 415
Query: 1218 LAWSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLPKMACPGTNTAGGCPTEIL 1385
LA+ L CG HLLPYFY+++ LL HR RDE +C K + P +L
Sbjct: 416 LAYCLACGGGHLLPYFYIIFMAILLTHRCLRDEHRCANKYGRDWEHYTAAVPYRLL 471
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,052,349
Number of extensions: 1602017
Number of successful extensions: 8598
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8535
Number of HSP's successfully gapped: 3
Length of query: 481
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 375
Effective length of database: 14,174,046
Effective search space: 5315267250
Effective search space used: 5315267250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012506
(1445 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122590.1| PREDICTED: delta(14)-sterol reductase [Sus s... 685 0.0
Alignment gi|XP_003353782.1| PREDICTED: 7-dehydrocholesterol reductase-li... 168 6e-42
Alignment gi|XP_003357845.1| PREDICTED: LOW QUALITY PROTEIN: 7-dehydrocho... 88 1e-17
>ref|XP_003122590.1| PREDICTED: delta(14)-sterol reductase [Sus scrofa].
Length = 418
Score = 685 bits (1767), Expect = 0.0
Identities = 345/418 (82%), Positives = 346/418 (82%)
Frame = +3
Query: 144 MAPPQGPRAPLEFXXXXXXXXXXXXXXXTMFHLLLAARSXXXXXXXXXXXXXXXXXXWSP 323
MAPPQGPRAPLEF TMFHLLLAARS WSP
Sbjct: 1 MAPPQGPRAPLEFGGPLGAAALMLLLPATMFHLLLAARSGPARLLGPPPYLPGLEMLWSP 60
Query: 324 WALFLCLAWLGLQAALYLLPARKVAEGQELKDKRRLLYPINGFQXXXXXXXXXXXXXXXX 503
WALFLCLAWLGLQAALYLLPARKVAEGQELKDKRRLLYPINGFQ
Sbjct: 61 WALFLCLAWLGLQAALYLLPARKVAEGQELKDKRRLLYPINGFQALVLTALLVGLGVLAR 120
Query: 504 XXXXXXPEMLLPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGRELN 683
PEMLLPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGRELN
Sbjct: 121 LPLGALPEMLLPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGRELN 180
Query: 684 PRICSFDFKYFCELRPGLIGWVLINLALLMQEAELRGSPSLAMWLVNGFQLLYVGDALWH 863
PRICSFDFKYFCELRPGLIGWVLINLALLMQEAELRGSPSLAMWLVNGFQLLYVGDALWH
Sbjct: 181 PRICSFDFKYFCELRPGLIGWVLINLALLMQEAELRGSPSLAMWLVNGFQLLYVGDALWH 240
Query: 864 EEAVLTTMDIIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICLINAVG 1043
EEAVLTTMDIIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICLINAVG
Sbjct: 241 EEAVLTTMDIIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICLINAVG 300
Query: 1044 YYIFRGANSQKNTFRKNPSDPRVADLETIPTATGRQLLVSGWWGMVRHPNYLGDLIMALA 1223
YYIFRGANSQKNTFRKNPSDPRVADLETIPTATGRQLLVSGWWGMVRHPNYLGDLIMALA
Sbjct: 301 YYIFRGANSQKNTFRKNPSDPRVADLETIPTATGRQLLVSGWWGMVRHPNYLGDLIMALA 360
Query: 1224 WSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLPKMACPGTNTAGGCPTEILAYGY 1397
WSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCL K P I+ Y Y
Sbjct: 361 WSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLQKYGLAWHEYCRRVPYRIMPYVY 418
>ref|XP_003353782.1| PREDICTED: 7-dehydrocholesterol reductase-like [Sus scrofa].
Length = 252
Score = 168 bits (426), Expect = 6e-42
Identities = 89/198 (44%), Positives = 122/198 (61%), Gaps = 11/198 (5%)
Frame = +3
Query: 774 QEAELRGSPSLAMWLVNGFQLLYVGDALWHEEAVLTTMDIIHDGFGFMLAFGDLAWVPFT 953
Q+ +L G + +M LVN Q +YV D W+E L T+DI HD FG+ L +GD W+P+
Sbjct: 35 QQQQLYGHVTNSMVLVNVLQAIYVLDFFWNETWYLKTIDICHDHFGWYLGWGDCVWLPYL 94
Query: 954 YSLQAQFLLYHPQPLGLPGASVICLINAVGYYIFRGANSQKNTFRKNPS-------DPRV 1112
Y+LQ +L+YHP L P A + L+ +GYYIFR AN QK+ FR+ P+V
Sbjct: 95 YTLQGLYLVYHPVQLSTPYAVGVLLLGLLGYYIFRMANHQKDLFRRTDGRCLIWGRKPQV 154
Query: 1113 ADLETIPTATGR----QLLVSGWWGMVRHPNYLGDLIMALAWSLPCGVSHLLPYFYLLYF 1280
+ + +A G+ +LLVSG+WG+ RH NY GDL+ +LA+ L CG HLLPYFY++Y
Sbjct: 155 IEC-SYTSADGQKHHSKLLVSGFWGVARHFNYTGDLLGSLAYCLACGGGHLLPYFYIIYM 213
Query: 1281 TALLVHREARDEQQCLPK 1334
LL HR RDE +C K
Sbjct: 214 GILLTHRCLRDEHRCANK 231
>ref|XP_003357845.1| PREDICTED: LOW QUALITY PROTEIN: 7-dehydrocholesterol reductase-like
[Sus scrofa].
Length = 563
Score = 87.8 bits (216), Expect = 1e-17
Identities = 66/210 (31%), Positives = 92/210 (43%), Gaps = 37/210 (17%)
Frame = +3
Query: 780 AELRGSPSLAMWLVNGFQLLYVGDALWHEEAVLTTMDIIHDGFGFML------------- 920
AEL G +++M LVN +Y+ D LW E L T+D G +
Sbjct: 322 AELYGHMTISMVLVNVLXAVYMLD-LWKETWYLKTIDRASLGISEAVGGQGRAPSPTPSS 380
Query: 921 ---AFGDLAWVPFTYS-----------LQAQFLLYHPQPLGLPGASVICLINAVGYYIFR 1058
A AW Y+ LQ +L+YHP P I L+ +GY +F
Sbjct: 381 LEHALLSSAWCGLLYTDEAMSDLCPFALQGLYLVYHPVQCSXPYTIGILLLXLLGYCVFW 440
Query: 1059 GANSQKNTFR----------KNPSDPRVADLETIPTATGRQLLVSGWWGMVRHPNYLGDL 1208
AN+QK+ F + P R + T +L VSG+WG+ H NY G+L
Sbjct: 441 MANNQKDLFHCTXGHWMIWDRKPXAIRCSYTXTNGQKQHSKLPVSGFWGVAHHFNYTGNL 500
Query: 1209 IMALAWSLPCGVSHLLPYFYLLYFTALLVH 1298
+ +L + L C HLLPYFY++ T LL H
Sbjct: 501 MGSLVYCLACSSGHLLPYFYIICMTILLTH 530
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,300,517
Number of extensions: 1038112
Number of successful extensions: 5870
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5797
Number of HSP's successfully gapped: 3
Length of query: 481
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 378
Effective length of database: 8,779,541
Effective search space: 3318666498
Effective search space used: 3318666498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012506
(1445 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082730.2| delta(14)-sterol reductase [Mus musculus]. 600 e-172
Alignment gi|NP_598576.2| lamin-B receptor [Mus musculus]. 409 e-114
Alignment gi|NP_031882.1| 7-dehydrocholesterol reductase [Mus musculus]. 219 6e-57
>ref|NP_082730.2| delta(14)-sterol reductase [Mus musculus].
Length = 418
Score = 600 bits (1547), Expect = e-172
Identities = 303/418 (72%), Positives = 318/418 (76%)
Frame = +3
Query: 144 MAPPQGPRAPLEFXXXXXXXXXXXXXXXTMFHLLLAARSXXXXXXXXXXXXXXXXXXWSP 323
M + +APLEF TMFHLLLAARS WSP
Sbjct: 1 MTSREASQAPLEFGGPLGVAALLILLPATMFHLLLAARSGPARLLALPAYLPGLEELWSP 60
Query: 324 WALFLCLAWLGLQAALYLLPARKVAEGQELKDKRRLLYPINGFQXXXXXXXXXXXXXXXX 503
WAL L WLGLQ ALYLLPARKVAEG ELKDK RL YPINGFQ
Sbjct: 61 WALLLLFIWLGLQVALYLLPARKVAEGLELKDKSRLRYPINGFQALVLTALLMGLGVSVG 120
Query: 504 XXXXXXPEMLLPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGRELN 683
P MLLPLAF+ TL +F+ SLLLY KALVAPASALAPGGNSGN +YDFFLGRELN
Sbjct: 121 LPLGALPGMLLPLAFATTLTSFIFSLLLYAKALVAPASALAPGGNSGNSMYDFFLGRELN 180
Query: 684 PRICSFDFKYFCELRPGLIGWVLINLALLMQEAELRGSPSLAMWLVNGFQLLYVGDALWH 863
PR+ SFDFKYFCELRPGLIGWV INLALLMQEAELRGSPSLAMWLVNGFQLLYVGDALW+
Sbjct: 181 PRLGSFDFKYFCELRPGLIGWVFINLALLMQEAELRGSPSLAMWLVNGFQLLYVGDALWY 240
Query: 864 EEAVLTTMDIIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICLINAVG 1043
EE+VLTTMDIIHDGFGFML FGDLAWVPFTYSLQAQFLLYHPQPLGLP A +ICL+ +G
Sbjct: 241 EESVLTTMDIIHDGFGFMLVFGDLAWVPFTYSLQAQFLLYHPQPLGLPMALLICLLKVIG 300
Query: 1044 YYIFRGANSQKNTFRKNPSDPRVADLETIPTATGRQLLVSGWWGMVRHPNYLGDLIMALA 1223
YYIFRGANSQKNTFRKNPSDP VA LETIPTATGRQLLVSGWWGMVRHPNYLGDLIMALA
Sbjct: 301 YYIFRGANSQKNTFRKNPSDPSVAGLETIPTATGRQLLVSGWWGMVRHPNYLGDLIMALA 360
Query: 1224 WSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLPKMACPGTNTAGGCPTEILAYGY 1397
WSLPCG+SHLLPYFY+LYFTALLVHREARDEQQCL K P I+ Y Y
Sbjct: 361 WSLPCGLSHLLPYFYVLYFTALLVHREARDEQQCLQKYGRAWQEYCKRVPYRIIPYVY 418
>ref|NP_598576.2| lamin-B receptor [Mus musculus].
Length = 626
Score = 409 bits (1051), Expect = e-114
Identities = 210/363 (57%), Positives = 249/363 (68%), Gaps = 2/363 (0%)
Frame = +3
Query: 315 WSPWALFLCLAWLGLQAALYLLPARKVAEGQELKDKRRLLYPINGFQXXXXXXXXXXXXX 494
W P + L W +QA +LLP KVAEG L D RRL Y +NG
Sbjct: 265 WEPRVCGVYLLWFFVQALFHLLPVGKVAEGTPLVDGRRLQYRLNGLYAFILTSAALGAAV 324
Query: 495 XXXXXXXXXPEMLLPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGR 674
L LA +AT + + S LY+++L AP L+P +SGN VYDFF+GR
Sbjct: 325 FWGVELCYLYTHFLQLALAATGFSVLLSAYLYVRSLRAPREELSPA-SSGNAVYDFFIGR 383
Query: 675 ELNPRICSFDFKYFCELRPGLIGWVLINLALLMQEAEL--RGSPSLAMWLVNGFQLLYVG 848
ELNPR+ +FD K+FCELRPGLIGWV+INL +L+ E ++ R +PSLAM LVN FQLLYV
Sbjct: 384 ELNPRLGAFDLKFFCELRPGLIGWVVINLVMLLMEMKIQERAAPSLAMILVNSFQLLYVV 443
Query: 849 DALWHEEAVLTTMDIIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICL 1028
DALW+EEA+LT+MDI+HDGFGFMLAFGDL WVPFTYSLQA +L+ HP L P ASVI
Sbjct: 444 DALWNEEALLTSMDIMHDGFGFMLAFGDLVWVPFTYSLQAFYLVSHPHDLSWPLASVIIA 503
Query: 1029 INAVGYYIFRGANSQKNTFRKNPSDPRVADLETIPTATGRQLLVSGWWGMVRHPNYLGDL 1208
+ GY IFR ANSQKN FRKNP+DP++A L+TI T+TG+ LLVSGWWG VRHPNYLGDL
Sbjct: 504 LKLCGYVIFRCANSQKNAFRKNPTDPKLAHLKTIHTSTGKSLLVSGWWGFVRHPNYLGDL 563
Query: 1209 IMALAWSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLPKMACPGTNTAGGCPTEILA 1388
IMALAWSLPCG +HLLPYFY++YFTALL+HREARDE QC K P I
Sbjct: 564 IMALAWSLPCGFNHLLPYFYIIYFTALLIHREARDEHQCRRKYGLAWEKYCQRVPYRIFP 623
Query: 1389 YGY 1397
Y Y
Sbjct: 624 YIY 626
>ref|NP_031882.1| 7-dehydrocholesterol reductase [Mus musculus].
Length = 471
Score = 219 bits (557), Expect = 6e-57
Identities = 120/279 (43%), Positives = 164/279 (58%), Gaps = 12/279 (4%)
Frame = +3
Query: 534 LPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGRELNPRICS-FDFK 710
+PL + A ++ + S +K + P SA +GN Y++ +G E NPRI FDFK
Sbjct: 174 IPLLWCANILGYAVSTFAMIKGYLFPTSA-EDCKFTGNFFYNYMMGIEFNPRIGKWFDFK 232
Query: 711 YFCELRPGLIGWVLINLALLMQEAELRGSPSLAMWLVNGFQLLYVGDALWHEEAVLTTMD 890
F RPG++ W LINL+ ++ EL G + +M LVN Q +YV D W+E L T+D
Sbjct: 233 LFFNGRPGIVAWTLINLSFAAKQQELYGHVTNSMILVNVLQAIYVLDFFWNETWYLKTID 292
Query: 891 IIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICLINAVGYYIFRGANS 1070
I HD FG+ L +GD W+P+ Y+LQ +L+YHP L P A I L+ VGYYIFR N
Sbjct: 293 ICHDHFGWYLGWGDCVWLPYLYTLQGLYLVYHPVQLSTPNALGILLLGLVGYYIFRMTNH 352
Query: 1071 QKNTFRKNP-------SDPRVADLETIPTATG----RQLLVSGWWGMVRHPNYLGDLIMA 1217
QK+ FR+ P+ + + +A G +LLVSG+WG+ RH NY GDL+ +
Sbjct: 353 QKDLFRRTDGRCLIWGKKPKAIEC-SYTSADGLKHHSKLLVSGFWGVARHFNYTGDLMGS 411
Query: 1218 LAWSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLPK 1334
LA+ L CG HLLPYFY++Y T LL HR RDE +C K
Sbjct: 412 LAYCLACGGGHLLPYFYIIYMTILLTHRCLRDEHRCANK 450
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,844,140
Number of extensions: 1306630
Number of successful extensions: 6329
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6268
Number of HSP's successfully gapped: 3
Length of query: 481
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 376
Effective length of database: 12,463,779
Effective search space: 4686380904
Effective search space used: 4686380904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012506
(1445 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003264.2| delta(14)-sterol reductase [Homo sapiens]. 628 e-180
Alignment gi|NP_002287.2| lamin-B receptor [Homo sapiens]. 409 e-114
Alignment gi|NP_919424.1| lamin-B receptor [Homo sapiens]. 409 e-114
Alignment gi|NP_001157289.1| 7-dehydrocholesterol reductase [Homo sapiens]. 219 5e-57
Alignment gi|NP_001351.2| 7-dehydrocholesterol reductase [Homo sapiens]. 219 5e-57
>ref|NP_003264.2| delta(14)-sterol reductase [Homo sapiens].
Length = 418
Score = 628 bits (1620), Expect = e-180
Identities = 319/418 (76%), Positives = 328/418 (78%)
Frame = +3
Query: 144 MAPPQGPRAPLEFXXXXXXXXXXXXXXXTMFHLLLAARSXXXXXXXXXXXXXXXXXXWSP 323
MAP QGPRAPLEF TMFHLLLAARS WSP
Sbjct: 1 MAPTQGPRAPLEFGGPLGAAALLLLLPATMFHLLLAARSGPARLLGPPASLPGLEVLWSP 60
Query: 324 WALFLCLAWLGLQAALYLLPARKVAEGQELKDKRRLLYPINGFQXXXXXXXXXXXXXXXX 503
AL L LAWLGLQAALYLLPARKVAEGQELKDK RL YPINGFQ
Sbjct: 61 RALLLWLAWLGLQAALYLLPARKVAEGQELKDKSRLRYPINGFQALVLTALLVGLGMSAG 120
Query: 504 XXXXXXPEMLLPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGRELN 683
PEMLLPLAF ATL AF+ SL LY+KA VAP SALAPGGNSGNP+YDFFLGRELN
Sbjct: 121 LPLGALPEMLLPLAFVATLTAFIFSLFLYMKAQVAPVSALAPGGNSGNPIYDFFLGRELN 180
Query: 684 PRICSFDFKYFCELRPGLIGWVLINLALLMQEAELRGSPSLAMWLVNGFQLLYVGDALWH 863
PRIC FDFKYFCELRPGLIGWVLINLALLM+EAELRGSPSLAMWLVNGFQLLYVGDALWH
Sbjct: 181 PRICFFDFKYFCELRPGLIGWVLINLALLMKEAELRGSPSLAMWLVNGFQLLYVGDALWH 240
Query: 864 EEAVLTTMDIIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICLINAVG 1043
EEAVLTTMDI HDGFGFMLAFGD+AWVPFTYSLQAQFLL+HPQPLGLP ASVICLINA G
Sbjct: 241 EEAVLTTMDITHDGFGFMLAFGDMAWVPFTYSLQAQFLLHHPQPLGLPMASVICLINATG 300
Query: 1044 YYIFRGANSQKNTFRKNPSDPRVADLETIPTATGRQLLVSGWWGMVRHPNYLGDLIMALA 1223
YYIFRGANSQKNTFRKNPSDPRVA LETI TATGR+LLVSGWWGMVRHPNYLGDLIMALA
Sbjct: 301 YYIFRGANSQKNTFRKNPSDPRVAGLETISTATGRKLLVSGWWGMVRHPNYLGDLIMALA 360
Query: 1224 WSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLPKMACPGTNTAGGCPTEILAYGY 1397
WSLPCGVSHLLPYFYLLYFTALLVHREARDE+QCL K P I+ Y Y
Sbjct: 361 WSLPCGVSHLLPYFYLLYFTALLVHREARDERQCLQKYGLAWQEYCRRVPYRIMPYIY 418
>ref|NP_002287.2| lamin-B receptor [Homo sapiens].
Length = 615
Score = 409 bits (1050), Expect = e-114
Identities = 209/363 (57%), Positives = 245/363 (67%), Gaps = 2/363 (0%)
Frame = +3
Query: 315 WSPWALFLCLAWLGLQAALYLLPARKVAEGQELKDKRRLLYPINGFQXXXXXXXXXXXXX 494
W + L W +Q YLLP KV EG L D RRL Y +NGF
Sbjct: 254 WETRVFGVYLLWFLIQVLFYLLPIGKVVEGTPLIDGRRLKYRLNGFYAFILTSAVIGTSL 313
Query: 495 XXXXXXXXXPEMLLPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGR 674
L A +AT+ V S+ LY+++L AP + L+P +SGN VYDFF+GR
Sbjct: 314 FQGVEFHYVYSHFLQFALAATVFCVVLSVYLYMRSLKAPRNDLSPA-SSGNAVYDFFIGR 372
Query: 675 ELNPRICSFDFKYFCELRPGLIGWVLINLALLMQEAEL--RGSPSLAMWLVNGFQLLYVG 848
ELNPRI +FD KYFCELRPGLIGWV+INL +L+ E ++ R PSLAM LVN FQLLYV
Sbjct: 373 ELNPRIGTFDLKYFCELRPGLIGWVVINLVMLLAEMKIQDRAVPSLAMILVNSFQLLYVV 432
Query: 849 DALWHEEAVLTTMDIIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICL 1028
DALW+EEA+LTTMDIIHDGFGFMLAFGDL WVPF YS QA +L+ HP + P AS+I +
Sbjct: 433 DALWNEEALLTTMDIIHDGFGFMLAFGDLVWVPFIYSFQAFYLVSHPNEVSWPMASLIIV 492
Query: 1029 INAVGYYIFRGANSQKNTFRKNPSDPRVADLETIPTATGRQLLVSGWWGMVRHPNYLGDL 1208
+ GY IFRGANSQKN FRKNPSDP++A L+TI T+TG+ LLVSGWWG VRHPNYLGDL
Sbjct: 493 LKLCGYVIFRGANSQKNAFRKNPSDPKLAHLKTIHTSTGKNLLVSGWWGFVRHPNYLGDL 552
Query: 1209 IMALAWSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLPKMACPGTNTAGGCPTEILA 1388
IMALAWSLPCG +H+LPYFY++YFT LLVHREARDE C K P I
Sbjct: 553 IMALAWSLPCGFNHILPYFYIIYFTMLLVHREARDEYHCKKKYGVAWEKYCQRVPYRIFP 612
Query: 1389 YGY 1397
Y Y
Sbjct: 613 YIY 615
>ref|NP_919424.1| lamin-B receptor [Homo sapiens].
Length = 615
Score = 409 bits (1050), Expect = e-114
Identities = 209/363 (57%), Positives = 245/363 (67%), Gaps = 2/363 (0%)
Frame = +3
Query: 315 WSPWALFLCLAWLGLQAALYLLPARKVAEGQELKDKRRLLYPINGFQXXXXXXXXXXXXX 494
W + L W +Q YLLP KV EG L D RRL Y +NGF
Sbjct: 254 WETRVFGVYLLWFLIQVLFYLLPIGKVVEGTPLIDGRRLKYRLNGFYAFILTSAVIGTSL 313
Query: 495 XXXXXXXXXPEMLLPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGR 674
L A +AT+ V S+ LY+++L AP + L+P +SGN VYDFF+GR
Sbjct: 314 FQGVEFHYVYSHFLQFALAATVFCVVLSVYLYMRSLKAPRNDLSPA-SSGNAVYDFFIGR 372
Query: 675 ELNPRICSFDFKYFCELRPGLIGWVLINLALLMQEAEL--RGSPSLAMWLVNGFQLLYVG 848
ELNPRI +FD KYFCELRPGLIGWV+INL +L+ E ++ R PSLAM LVN FQLLYV
Sbjct: 373 ELNPRIGTFDLKYFCELRPGLIGWVVINLVMLLAEMKIQDRAVPSLAMILVNSFQLLYVV 432
Query: 849 DALWHEEAVLTTMDIIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICL 1028
DALW+EEA+LTTMDIIHDGFGFMLAFGDL WVPF YS QA +L+ HP + P AS+I +
Sbjct: 433 DALWNEEALLTTMDIIHDGFGFMLAFGDLVWVPFIYSFQAFYLVSHPNEVSWPMASLIIV 492
Query: 1029 INAVGYYIFRGANSQKNTFRKNPSDPRVADLETIPTATGRQLLVSGWWGMVRHPNYLGDL 1208
+ GY IFRGANSQKN FRKNPSDP++A L+TI T+TG+ LLVSGWWG VRHPNYLGDL
Sbjct: 493 LKLCGYVIFRGANSQKNAFRKNPSDPKLAHLKTIHTSTGKNLLVSGWWGFVRHPNYLGDL 552
Query: 1209 IMALAWSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLPKMACPGTNTAGGCPTEILA 1388
IMALAWSLPCG +H+LPYFY++YFT LLVHREARDE C K P I
Sbjct: 553 IMALAWSLPCGFNHILPYFYIIYFTMLLVHREARDEYHCKKKYGVAWEKYCQRVPYRIFP 612
Query: 1389 YGY 1397
Y Y
Sbjct: 613 YIY 615
>ref|NP_001157289.1| 7-dehydrocholesterol reductase [Homo sapiens].
Length = 475
Score = 219 bits (558), Expect = 5e-57
Identities = 120/279 (43%), Positives = 165/279 (59%), Gaps = 12/279 (4%)
Frame = +3
Query: 534 LPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGRELNPRICS-FDFK 710
+PL + A ++ + S +K P SA +GN Y++ +G E NPRI FDFK
Sbjct: 178 IPLLWCANILGYAVSTFAMVKGYFFPTSA-RDCKFTGNFFYNYMMGIEFNPRIGKWFDFK 236
Query: 711 YFCELRPGLIGWVLINLALLMQEAELRGSPSLAMWLVNGFQLLYVGDALWHEEAVLTTMD 890
F RPG++ W LINL+ ++ EL + AM LVN Q +YV D W+E L T+D
Sbjct: 237 LFFNGRPGIVAWTLINLSFAAKQRELHSHVTNAMVLVNVLQAIYVIDFFWNETWYLKTID 296
Query: 891 IIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICLINAVGYYIFRGANS 1070
I HD FG+ L +GD W+P+ Y+LQ +L+YHP L P A + L+ VGYYIFR AN
Sbjct: 297 ICHDHFGWYLGWGDCVWLPYLYTLQGLYLVYHPVQLSTPHAVGVLLLGLVGYYIFRVANH 356
Query: 1071 QKNTFRKNPS-------DPRVADLETIPTATGR----QLLVSGWWGMVRHPNYLGDLIMA 1217
QK+ FR+ P+V + + +A G+ +LLVSG+WG+ RH NY+GDL+ +
Sbjct: 357 QKDLFRRTDGRCLIWGRKPKVIEC-SYTSADGQRHHSKLLVSGFWGVARHFNYVGDLMGS 415
Query: 1218 LAWSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLPK 1334
LA+ L CG HLLPYFY++Y LL HR RDE +C K
Sbjct: 416 LAYCLACGGGHLLPYFYIIYMAILLTHRCLRDEHRCASK 454
>ref|NP_001351.2| 7-dehydrocholesterol reductase [Homo sapiens].
Length = 475
Score = 219 bits (558), Expect = 5e-57
Identities = 120/279 (43%), Positives = 165/279 (59%), Gaps = 12/279 (4%)
Frame = +3
Query: 534 LPLAFSATLIAFVGSLLLYLKALVAPASALAPGGNSGNPVYDFFLGRELNPRICS-FDFK 710
+PL + A ++ + S +K P SA +GN Y++ +G E NPRI FDFK
Sbjct: 178 IPLLWCANILGYAVSTFAMVKGYFFPTSA-RDCKFTGNFFYNYMMGIEFNPRIGKWFDFK 236
Query: 711 YFCELRPGLIGWVLINLALLMQEAELRGSPSLAMWLVNGFQLLYVGDALWHEEAVLTTMD 890
F RPG++ W LINL+ ++ EL + AM LVN Q +YV D W+E L T+D
Sbjct: 237 LFFNGRPGIVAWTLINLSFAAKQRELHSHVTNAMVLVNVLQAIYVIDFFWNETWYLKTID 296
Query: 891 IIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGLPGASVICLINAVGYYIFRGANS 1070
I HD FG+ L +GD W+P+ Y+LQ +L+YHP L P A + L+ VGYYIFR AN
Sbjct: 297 ICHDHFGWYLGWGDCVWLPYLYTLQGLYLVYHPVQLSTPHAVGVLLLGLVGYYIFRVANH 356
Query: 1071 QKNTFRKNPS-------DPRVADLETIPTATGR----QLLVSGWWGMVRHPNYLGDLIMA 1217
QK+ FR+ P+V + + +A G+ +LLVSG+WG+ RH NY+GDL+ +
Sbjct: 357 QKDLFRRTDGRCLIWGRKPKVIEC-SYTSADGQRHHSKLLVSGFWGVARHFNYVGDLMGS 415
Query: 1218 LAWSLPCGVSHLLPYFYLLYFTALLVHREARDEQQCLPK 1334
LA+ L CG HLLPYFY++Y LL HR RDE +C K
Sbjct: 416 LAYCLACGGGHLLPYFYIIYMAILLTHRCLRDEHRCASK 454
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,026,024
Number of extensions: 1592469
Number of successful extensions: 8424
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8311
Number of HSP's successfully gapped: 5
Length of query: 481
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 375
Effective length of database: 14,802,980
Effective search space: 5551117500
Effective search space used: 5551117500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012506
(1445 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 400 e-109
Sscrofa_Chr04 64 2e-07
>Sscrofa_Chr02
|| Length = 162569375
Score = 400 bits (202), Expect = e-109
Identities = 205/206 (99%)
Strand = Plus / Minus
Query: 190 ccctgggtgctgcggcgctgatgctgctgctccccgccaccatgttccacctgctactgg 249
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6212901 ccctaggtgctgcggcgctgatgctgctgctccccgccaccatgttccacctgctactgg 6212842
Query: 250 cagcccgttcgggcccggcgcgtctcctgggcccacccccctacctgcccggactcgaga 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6212841 cagcccgttcgggcccggcgcgtctcctgggcccacccccctacctgcccggactcgaga 6212782
Query: 310 tgctgtggagcccgtgggcgctgtttctgtgtctcgcctggctcggcctgcaggcggcgc 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6212781 tgctgtggagcccgtgggcgctgtttctgtgtctcgcctggctcggcctgcaggcggcgc 6212722
Query: 370 tctacctcttgccggcgcgcaaggtg 395
||||||||||||||||||||||||||
Sbjct: 6212721 tctacctcttgccggcgcgcaaggtg 6212696
Score = 391 bits (197), Expect = e-106
Identities = 197/197 (100%)
Strand = Plus / Minus
Query: 447 ggcttccaggccctggtgctgacagccctattggtgggcctgggggtgttagccaggctg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6212134 ggcttccaggccctggtgctgacagccctattggtgggcctgggggtgttagccaggctg 6212075
Query: 507 cccctgggcgcgctcccagaaatgctcctgcccttggcattttccgccaccctcatcgcc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6212074 cccctgggcgcgctcccagaaatgctcctgcccttggcattttccgccaccctcatcgcc 6212015
Query: 567 ttcgtcggcagcctccttctctatctgaaggctctggtagcccctgcctccgccctggca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6212014 ttcgtcggcagcctccttctctatctgaaggctctggtagcccctgcctccgccctggca 6211955
Query: 627 cctggcgggaactcagg 643
|||||||||||||||||
Sbjct: 6211954 cctggcgggaactcagg 6211938
Score = 387 bits (195), Expect = e-104
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 3 gacaaaagcggccgctgtccgagctcagggctcagacaggtgcaagcccagctgggctgg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6213502 gacaaaagcggccgctgtccgagctcagggctcagacaggtgcaagcccagctgggctgg 6213443
Query: 63 gtctctgcgccaccgagcccatctcctgggggatggggtgggccgtgtttccttgacaga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6213442 gtctctgcgccaccgagcccatctcctgggggatggggtgggccgtgtttccttgacaga 6213383
Query: 123 ccttccggcggagcggagaccatggcccctcctcagggcccccgggccccgctggaattc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6213382 ccttccggcggagcggagaccatggcccctcctcagggcccccgggccccgctggaattc 6213323
Query: 183 ggaggacccctgggt 197
|||||||||||||||
Sbjct: 6213322 ggaggacccctgggt 6213308
Score = 323 bits (163), Expect = 2e-85
Identities = 169/171 (98%)
Strand = Plus / Minus
Query: 865 aggaggcggtcctcaccaccatggacatcatccacgatgggtttggcttcatgctggcct 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6210159 aggaggcggtcctcaccaccatggacatcatccacgatgggtttggcttcatgctggcct 6210100
Query: 925 tcggggacctcgcctgggtccctttcacctacagcctgcaggcgcagttcctgctgtacc 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6210099 tcggggacctcgcctgggtccctttcacctacagcctgcaggcgcagttcctgctgtacc 6210040
Query: 985 acccacagcccctggggttacccggggcatcggtcatctgcctcatcaacg 1035
||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 6210039 acccacagcccctggggttgcccggggcctcggtcatctgcctcatcaacg 6209989
Score = 270 bits (136), Expect = 2e-69
Identities = 192/208 (92%), Gaps = 2/208 (0%)
Strand = Plus / Minus
Query: 1239 ggggtgtcccacctgttgccctacttctacctcctctacttcactgcgctgctggtgcac 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6209216 ggggtgtcccacctgttgccctacttctacctcctctacttcactgcgctgctggtgcac 6209157
Query: 1299 cgggaagcccgcgatgagcagcagtgtctaccgaag-atggcctgccctggcacgaatac 1357
||||| ||||||||||||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 6209156 cgggaggcccgcgatgagcagcagtgtctacagaagtatggcttggcctggcacgaatac 6209097
Query: 1358 tgccggcgggtgccctaccgaaatcctggcctatggctactgaaatagcttcctgcaccc 1417
|||||||||||||||||||| |||| || |||||| |||||||| ||||| | ||||||
Sbjct: 6209096 tgccggcgggtgccctaccg-aatcatgccctatgtctactgaagtagctccacgcaccc 6209038
Query: 1418 caagccggggatatgcagggaggcccat 1445
|| |||||| ||||||||| ||||||||
Sbjct: 6209037 caggccgggcatatgcaggcaggcccat 6209010
Score = 248 bits (125), Expect = 7e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 1116 gaccttgagaccatccctacagccacagggcgacagctgctggtgtccggatggtggggt 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6209622 gaccttgagaccatccctacagccacagggcgacagctgctggtgtccggatggtggggt 6209563
Query: 1176 atggtccgccatcccaactaccttggagacctcatcatggctctggcctggtccctgccc 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6209562 atggtccgccatcccaactaccttggagacctcatcatggctctggcctggtccctgccc 6209503
Query: 1236 tgcgg 1240
|||||
Sbjct: 6209502 tgcgg 6209498
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 746 ggtcctcatcaacctggccttgctgatgcaggaggcagaacttcgcgggagtccctcact 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6210370 ggtcctcatcaacctggccttgctgatgcaggaggcagaacttcgcgggagtccctcact 6210311
Query: 806 ggccatgtggctggtcaatggcttccagctactatacgtgggagatgccctttggcacga 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6210310 ggccatgtggctggtcaatggcttccagctactatacgtgggagatgccctttggcacga 6210251
Query: 866 gg 867
||
Sbjct: 6210250 gg 6210249
Score = 216 bits (109), Expect = 3e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 640 caggcaaccccgtttacgactttttcctgggacgggagctcaacccacgcatctgttcct 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6211862 caggcaaccccgtttacgactttttcctgggacgggagctcaacccacgcatctgttcct 6211803
Query: 700 ttgacttcaaatatttctgcgaactgcggcctggcctcatcggctgggt 748
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6211802 ttgacttcaaatatttctgcgaactgcggcctggcctcatcggctgggt 6211754
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 1035 gctgttggatactacattttccgtggagccaattctcagaaaaacaccttccgaaagaat 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6209787 gctgttggatactacattttccgtggagccaattctcagaaaaacaccttccgaaagaat 6209728
Query: 1095 ccttctgatcccagagtggccg 1116
||||||||||||||||||||||
Sbjct: 6209727 ccttctgatcccagagtggccg 6209706
Score = 115 bits (58), Expect = 7e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 391 aggtggccgaggggcaggaactgaaggacaagagacgactgctctaccccattaacgg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6212593 aggtggccgaggggcaggaactgaaggacaagagacgactgctctaccccattaacgg 6212536
>Sscrofa_Chr04
|| Length = 143465943
Score = 63.9 bits (32), Expect = 2e-07
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 1139 cacagggcgacagctgctggtgtccggatggtggggtatggtccgccatcccaactacct 1198
||||||| || ||||||||||||| | |||||||||| |||| |||||||||| |||
Sbjct: 36607606 cacagggtgatagctgctggtgtctgagtggtggggtagggtctgccatcccaatcgcct 36607665
Query: 1199 tggagacctcatcatggctctggc 1222
| | || |||||||||||||||||
Sbjct: 36607666 ttgggagctcatcatggctctggc 36607689
Score = 63.9 bits (32), Expect = 2e-07
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 1139 cacagggcgacagctgctggtgtccggatggtggggtatggtccgccatcccaactacct 1198
||||||| || ||||||||||||| | |||||||||| |||| |||||||||| |||
Sbjct: 36640087 cacagggtgatagctgctggtgtctgagtggtggggtagggtctgccatcccaatcgcct 36640146
Query: 1199 tggagacctcatcatggctctggc 1222
| | || |||||||||||||||||
Sbjct: 36640147 ttgggagctcatcatggctctggc 36640170
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,566,116
Number of extensions: 189
Number of successful extensions: 189
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 12
Length of query: 1445
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1424
Effective length of database: 2,808,413,156
Effective search space: 3999180334144
Effective search space used: 3999180334144
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)