Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012507
(1896 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029211.1| collagen alpha-1(I) chain precursor [Bos tau... 519 e-147
Alignment gi|NP_001001135.2| collagen alpha-1(II) chain isoform 1 [Bos ta... 385 e-107
Alignment gi|NP_001106695.1| collagen alpha-1(II) chain isoform 2 [Bos ta... 385 e-107
Alignment gi|NP_001070299.1| collagen alpha-1(III) chain [Bos taurus]. 334 2e-91
Alignment gi|NP_776945.1| collagen alpha-2(I) chain precursor [Bos taurus]. 328 1e-89
Alignment gi|NP_001159981.1| collagen alpha-1(XI) chain [Bos taurus]. 189 6e-48
Alignment gi|XP_002691766.1| PREDICTED: collagen alpha-1(V) chain-like [B... 186 8e-47
Alignment gi|NP_001192553.1| collagen alpha-3(V) chain [Bos taurus]. 166 9e-41
Alignment gi|XP_002688885.1| PREDICTED: collagen, type V, alpha 3 [Bos ta... 166 9e-41
Alignment gi|NP_001039664.1| collagen alpha-2(XI) chain precursor [Bos ta... 149 8e-36
>ref|NP_001029211.1| collagen alpha-1(I) chain precursor [Bos taurus].
Length = 1463
Score = 519 bits (1336), Expect = e-147
Identities = 246/269 (91%), Positives = 250/269 (92%)
Frame = +1
Query: 418 FDFSFLPQPPQEKAHDGGRYYXXXXXXXXXXXXLEVDTTLKSLSQQIENIRSPEGSRKNP 597
+D SFLPQPPQEKAHDGGRYY LEVDTTLKSLSQQIENIRSPEGSRKNP
Sbjct: 1195 YDLSFLPQPPQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNP 1254
Query: 598 ARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVPQKNWYIS 777
ARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSV QKNWYIS
Sbjct: 1255 ARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKNWYIS 1314
Query: 778 KNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVA 957
KNPK+KRHVWYGESMT GFQFEYGG+GSDPADVAIQLTFLRLMSTEASQNITYHCKNSVA
Sbjct: 1315 KNPKEKRHVWYGESMTGGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVA 1374
Query: 958 YMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVIYDGCTSHTGAWGKTVIEYKTTKTS 1137
YMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSV YDGCTSHTGAWGKTVIEYKTTKTS
Sbjct: 1375 YMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTS 1434
Query: 1138 RLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
RLPIIDVAPLDVGAPDQEFG D+ P CFL
Sbjct: 1435 RLPIIDVAPLDVGAPDQEFGFDVGPACFL 1463
Score = 69.7 bits (169), Expect = 9e-12
Identities = 36/61 (59%), Positives = 36/61 (59%)
Frame = +1
Query: 1 VGPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSGL 180
VGPAGKSGDRGET DKGETGEQGDRGIKGHRGFSGL
Sbjct: 1056 VGPAGKSGDRGETGPAGPAGPIGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGL 1115
Query: 181 Q 183
Q
Sbjct: 1116 Q 1116
>ref|NP_001001135.2| collagen alpha-1(II) chain isoform 1 [Bos taurus].
Length = 1487
Score = 385 bits (989), Expect = e-107
Identities = 169/235 (71%), Positives = 205/235 (87%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
EVD TLKSL+ QIE++RSPEGSRKNPARTCRDLK+CH +WKSG+YWIDPNQGC LDA+KV
Sbjct: 1254 EVDATLKSLNNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKV 1313
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNMETGETCVYP SVP+KNW+ SK+ KDK+H+W+GE++ GF F YG + P
Sbjct: 1314 FCNMETGETCVYPNPASVPKKNWWSSKS-KDKKHIWFGETINGGFHFSYGDDNLAPNTAN 1372
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+Q+TFLRL+STE SQNITYHCKNS+AY+D+ GNLKKALL+QGSN++EIRAEGNSRFTY+
Sbjct: 1373 VQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYT 1432
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
V+ DGCT HTG WGKT+IEY++ KTSRLPIID+AP+D+G P+QEFG+D+ PVCFL
Sbjct: 1433 VLKDGCTKHTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL 1487
Score = 57.0 bits (136), Expect = 6e-08
Identities = 28/60 (46%), Positives = 31/60 (51%)
Frame = +1
Query: 4 GPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSGLQ 183
GP GK GDRGE DKGETGE G+RG+KGHRGF+GLQ
Sbjct: 1080 GPIGKQGDRGEAGAQGPMGPAGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQ 1139
>ref|NP_001106695.1| collagen alpha-1(II) chain isoform 2 [Bos taurus].
Length = 1418
Score = 385 bits (989), Expect = e-107
Identities = 169/235 (71%), Positives = 205/235 (87%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
EVD TLKSL+ QIE++RSPEGSRKNPARTCRDLK+CH +WKSG+YWIDPNQGC LDA+KV
Sbjct: 1185 EVDATLKSLNNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKV 1244
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNMETGETCVYP SVP+KNW+ SK+ KDK+H+W+GE++ GF F YG + P
Sbjct: 1245 FCNMETGETCVYPNPASVPKKNWWSSKS-KDKKHIWFGETINGGFHFSYGDDNLAPNTAN 1303
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+Q+TFLRL+STE SQNITYHCKNS+AY+D+ GNLKKALL+QGSN++EIRAEGNSRFTY+
Sbjct: 1304 VQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYT 1363
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
V+ DGCT HTG WGKT+IEY++ KTSRLPIID+AP+D+G P+QEFG+D+ PVCFL
Sbjct: 1364 VLKDGCTKHTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL 1418
Score = 57.0 bits (136), Expect = 6e-08
Identities = 28/60 (46%), Positives = 31/60 (51%)
Frame = +1
Query: 4 GPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSGLQ 183
GP GK GDRGE DKGETGE G+RG+KGHRGF+GLQ
Sbjct: 1011 GPIGKQGDRGEAGAQGPMGPAGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQ 1070
>ref|NP_001070299.1| collagen alpha-1(III) chain [Bos taurus].
Length = 1466
Score = 334 bits (856), Expect = 2e-91
Identities = 150/235 (63%), Positives = 186/235 (79%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ T+LKS++ QIE++ SP+GSRKNPAR CRDLK CH + +SGEYW+DPNQGC LDAIKV
Sbjct: 1233 EIMTSLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELQSGEYWVDPNQGCKLDAIKV 1292
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
+CNMETGETC+ + ++PQKNW+ +K+HVW+GESM GFQF YG +
Sbjct: 1293 YCNMETGETCISASPLTIPQKNWWTDSGA-EKKHVWFGESMEGGFQFSYGNPELPEDVLD 1351
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGS
Animal-Genome cDNA 20110601C-012507
Animal-Genome cDNA 20110601C-012507
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012507
(1896 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003090.1| collagen alpha-1(I) chain precursor [Canis l... 526 e-149
Alignment gi|NP_001006952.1| collagen alpha-1(II) chain [Canis lupus fami... 386 e-107
Alignment gi|XP_863148.1| PREDICTED: similar to Collagen alpha 1(III) cha... 338 1e-92
Alignment gi|XP_863124.1| PREDICTED: similar to Collagen alpha 1(III) cha... 338 1e-92
Alignment gi|XP_863103.1| PREDICTED: similar to Collagen alpha 1(III) cha... 338 1e-92
Alignment gi|XP_535997.2| PREDICTED: similar to Collagen alpha 1(III) cha... 338 1e-92
Alignment gi|XP_863049.1| PREDICTED: similar to Collagen alpha 1(III) cha... 338 1e-92
Alignment gi|XP_863024.1| PREDICTED: similar to Collagen alpha 1(III) cha... 338 1e-92
Alignment gi|XP_851009.1| PREDICTED: similar to Collagen alpha 1(III) cha... 338 1e-92
Alignment gi|NP_001003187.1| collagen alpha-2(I) chain precursor [Canis l... 332 1e-90
>ref|NP_001003090.1| collagen alpha-1(I) chain precursor [Canis lupus familiaris].
Length = 1460
Score = 526 bits (1354), Expect = e-149
Identities = 249/269 (92%), Positives = 253/269 (94%)
Frame = +1
Query: 418 FDFSFLPQPPQEKAHDGGRYYXXXXXXXXXXXXLEVDTTLKSLSQQIENIRSPEGSRKNP 597
FDFSFLPQPPQEKAHDGGRYY LEVDTTLKSLSQQIENIRSPEGSRKNP
Sbjct: 1192 FDFSFLPQPPQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNP 1251
Query: 598 ARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVPQKNWYIS 777
ARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQP V QKNWYIS
Sbjct: 1252 ARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPQVAQKNWYIS 1311
Query: 778 KNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVA 957
KNPK+KRHVWYGESMTDGFQFEYGG+GSDPADVAIQLTFLRLMSTEASQNITYHCKNSVA
Sbjct: 1312 KNPKEKRHVWYGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVA 1371
Query: 958 YMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVIYDGCTSHTGAWGKTVIEYKTTKTS 1137
YMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSV YDGCTSHTGAWGKTVIEYKTTKTS
Sbjct: 1372 YMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTS 1431
Query: 1138 RLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
RLPIIDVAPLDVGAPDQEFG+D+ PVCFL
Sbjct: 1432 RLPIIDVAPLDVGAPDQEFGMDIGPVCFL 1460
Score = 68.6 bits (166), Expect = 2e-11
Identities = 35/61 (57%), Positives = 36/61 (59%)
Frame = +1
Query: 1 VGPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSGL 180
VGPAGK+GDRGET DKGETGEQGDRGIKGHRGFSGL
Sbjct: 1053 VGPAGKNGDRGETGPAGPAGPIGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGL 1112
Query: 181 Q 183
Q
Sbjct: 1113 Q 1113
>ref|NP_001006952.1| collagen alpha-1(II) chain [Canis lupus familiaris].
Length = 1487
Score = 386 bits (991), Expect = e-107
Identities = 170/235 (72%), Positives = 205/235 (87%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
EVD TLKSL+ QIE+IRSPEGSRKNPARTCRDLK+CH +WKSG+YWIDPNQGC LDA+KV
Sbjct: 1254 EVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKV 1313
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNMETGETCVYP SVP+KNW+ SK+ KDK+H+W+GE++ GF F YG + P
Sbjct: 1314 FCNMETGETCVYPNPASVPKKNWWSSKS-KDKKHIWFGETINGGFHFSYGDDNLAPNTAN 1372
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+Q+TFLRL+STE SQNITYHCKNS+AY+D+ GNLKKALL+QGSN++EIRAEGNSRFTY+
Sbjct: 1373 VQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYT 1432
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
V+ DGCT HTG WGKT+IEY++ KTSRLPIID+AP+D+G P+QEFG+D+ PVCFL
Sbjct: 1433 VLKDGCTKHTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL 1487
Score = 55.5 bits (132), Expect = 2e-07
Identities = 27/60 (45%), Positives = 30/60 (50%)
Frame = +1
Query: 4 GPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSGLQ 183
GP GK GDRGE DKGE GE G+RG+KGHRGF+GLQ
Sbjct: 1080 GPTGKQGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQ 1139
>ref|XP_863148.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform
12 [Canis familiaris].
Length = 1466
Score = 338 bits (867), Expect = 1e-92
Identities = 156/235 (66%), Positives = 187/235 (79%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ T+LKS+S QIE++ SP+GSRK+PAR CRDLK CH + KSGEYW+DPNQGC LDAIKV
Sbjct: 1233 EIMTSLKSVSGQIESLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKV 1292
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNMETGETC+ + SVP+KNW+ +K+HVW+GESM GFQF YG +
Sbjct: 1293 FCNMETGETCLNASPGSVPRKNWWTDSGA-EKKHVWFGESMDGGFQFGYGNPELPEDVLD 1351
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+QL FLRL+S+ ASQNITYHCKNS+AYMD +GN+KKAL L GSNE E +AEGNS+FTY+
Sbjct: 1352 VQLAFLRLLSSRASQNITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYT 1411
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
V+ DGCT HTG WGKTV EY+T K RLPIID+AP DVG PDQEFG+D+ PVCFL
Sbjct: 1412 VLEDGCTKHTGEWGKTVFEYRTRKAVRLPIIDIAPYDVGGPDQEFGVDVGPVCFL 1466
Score = 57.0 bits (136), Expect = 6e-08
Identities = 30/59 (50%), Positives = 31/59 (52%)
Frame = +1
Query: 1 VGPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSG 177
VGPAGKSGDRGET DKGETGE+G GIKGHRGF G
Sbjct: 1056 VGPAGKSGDRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPG 1114
>ref|XP_863124.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform
11 [Canis familiaris].
Length = 1450
Score = 338 bits (867), Expect = 1e-92
Identities = 156/235 (66%), Positives = 187/235 (79%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ T+LKS+S QIE++ SP+GSRK+PAR CRDLK CH + KSGEYW+DPNQGC LDAIKV
Sbjct: 1217 EIMTSLKSVSGQIESLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKV 1276
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNMETGETC+ + SVP+KNW+ +K+HVW+GESM GFQF YG +
Sbjct: 1277 FCNMETGETCLNASPGSVPRKNWWTDSGA-EKKHVWFGESMDGGFQFGYGNPELPEDVLD 1335
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+QL FLRL+S+ ASQNITYHCKNS+AYMD +GN+KKAL L GSNE E +AEGNS+FTY+
Sbjct: 1336 VQLAFLRLLSSRASQNITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYT 1395
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
V+ DGCT HTG WGKTV EY+T K RLPIID+AP DVG PDQEFG+D+ PVCFL
Sbjct: 1396 VLEDGCTKHTGEWGKTVFEYRTRKAVRLPIIDIAPYDVGGPDQEFGVDVGPVCFL 1450
Score = 57.0 bits (136), Expect = 6e-08
Identities = 30/59 (50%), Positives = 31/59 (52%)
Frame = +1
Query: 1 VGPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSG 177
VGPAGKSGDRGET DKGETGE+G GIKGHRGF G
Sbjct: 1040 VGPAGKSGDRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPG 1098
>ref|XP_863103.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform
10 [Canis familiaris].
Length = 1456
Score = 338 bits (867), Expect = 1e-92
Identities = 156/235 (66%), Positives = 187/235 (79%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ T+LKS+S QIE++ SP+GSRK+PAR CRDLK CH + KSGEYW+DPNQGC LDAIKV
Sbjct: 1223 EIMTSLKSVSGQIESLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKV 1282
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNMETGETC+ + SVP+KNW+ +K+HVW+GESM GFQF YG +
Sbjct: 1283 FCNMETGETCLNASPGSVPRKNWWTDSGA-EKKHVWFGESMDGGFQFGYGNPELPEDVLD 1341
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+QL FLRL+S+ ASQNITYHCKNS+AYMD +GN+KKAL L GSNE E +AEGNS+FTY+
Sbjct: 1342 VQLAFLRLLSSRASQNITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYT 1401
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
V+ DGCT HTG WGKTV EY+T K RLPIID+AP DVG PDQEFG+D+ PVCFL
Sbjct: 1402 VLEDGCTKHTGEWGKTVFEYRTRKAVRLPIIDIAPYDVGGPDQEFGVDVGPVCFL 1456
Score = 57.0 bits (136), Expect = 6e-08
Identities = 30/59 (50%), Positives = 31/59 (52%)
Frame = +1
Query: 1 VGPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSG 177
VGPAGKSGDRGET DKGETGE+G GIKGHRGF G
Sbjct: 1046 VGPAGKSGDRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPG 1104
>ref|XP_535997.2| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 1
[Canis familiaris].
Length = 1244
Score = 338 bits (867), Expect = 1e-92
Identities = 156/235 (66%), Positives = 187/235 (79%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ T+LKS+S QIE++ SP+GSRK+PAR CRDLK CH + KSGEYW+DPNQGC LDAIKV
Sbjct: 1011 EIMTSLKSVSGQIESLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKV 1070
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNMETGETC+ + SVP+KNW+ +K+HVW+GESM GFQF YG +
Sbjct: 1071 FCNMETGETCLNASPGSVPRKNWWTDSGA-EKKHVWFGESMDGGFQFGYGNPELPEDVLD 1129
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+QL FLRL+S+ ASQNITYHCKNS+AYMD +GN+KKAL L GSNE E +AEGNS+FTY+
Sbjct: 1130 VQLAFLRLLSSRASQNITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYT 1189
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
V+ DGCT HTG WGKTV EY+T K RLPIID+AP DVG PDQEFG+D+ PVCFL
Sbjct: 1190 VLEDGCTKHTGEWGKTVFEYRTRKAVRLPIIDIAPYDVGGPDQEFGVDVGPVCFL 1244
Score = 57.0 bits (136), Expect = 6e-08
Identities = 30/59 (50%), Positives = 31/59 (52%)
Frame = +1
Query: 1 VGPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSG 177
VGPAGKSGDRGET DKGETGE+G GIKGHRGF G
Sbjct: 834 VGPAGKSGDRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPG 892
>ref|XP_863049.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 9
[Canis familiaris].
Length = 1062
Score = 338 bits (867), Expect = 1e-92
Identities = 156/235 (66%), Positives = 187/235 (79%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ T+LKS+S QIE++ SP+GSRK+PAR CRDLK CH + KSGEYW+DPNQGC LDAIKV
Sbjct: 829 EIMTSLKSVSGQIESLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKV 888
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNMETGETC+ + SVP+KNW+ +K+HVW+GESM GFQF YG +
Sbjct: 889 FCNMETGETCLNASPGSVPRKNWWTDSGA-EKKHVWFGESMDGGFQFGYGNPELPEDVLD 947
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+QL FLRL+S+ ASQNITYHCKNS+AYMD +GN+KKAL L GSNE E +AEGNS+FTY+
Sbjct: 948 VQLAFLRLLSSRASQNITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYT 1007
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
V+ DGCT HTG WGKTV EY+T K RLPIID+AP DVG PDQEFG+D+ PVCFL
Sbjct: 1008 VLEDGCTKHTGEWGKTVFEYRTRKAVRLPIIDIAPYDVGGPDQEFGVDVGPVCFL 1062
Score = 57.0 bits (136), Expect = 6e-08
Identities = 30/59 (50%), Positives = 31/59 (52%)
Frame = +1
Query: 1 VGPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSG 177
VGPAGKSGDRGET DKGETGE+G GIKGHRGF G
Sbjct: 652 VGPAGKSGDRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPG 710
>ref|XP_863024.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 8
[Canis familiaris].
Length = 645
Score = 338 bits (867), Expect = 1e-92
Identities = 156/235 (66%), Positives = 187/235 (79%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ T+LKS+S QIE++ SP+GSRK+PAR CRDLK CH + KSGEYW+DPNQGC LDAIKV
Sbjct: 412 EIMTSLKSVSGQIESLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKV 471
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNMETGETC+ + SVP+KNW+ +K+HVW+GESM GFQF YG +
Sbjct: 472 FCNMETGETCLNASPGSVPRKNWWTDSGA-EKKHVWFGESMDGGFQFGYGNPELPEDVLD 530
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+QL FLRL+S+ ASQNITYHCKNS+AYMD +GN+KKAL L GSNE E +AEGNS+FTY+
Sbjct: 531 VQLAFLRLLSSRASQNITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYT 590
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
V+ DGCT HTG WGKTV EY+T K RLPIID+AP DVG PDQEFG+D+ PVCFL
Sbjct: 591 VLEDGCTKHTGEWGKTVFEYRTRKAVRLPIIDIAPYDVGGPDQEFGVDVGPVCFL 645
>ref|XP_851009.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 2
[Canis familiaris].
Length = 1465
Score = 338 bits (867), Expect = 1e-92
Identities = 156/235 (66%), Positives = 187/235 (79%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ T+LKS+S QIE++ SP+GSRK+PAR CRDLK CH + KSGEYW+DPNQGC LDAIKV
Sbjct: 1232 EIMTSLKSVSGQIESLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKV 1291
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNMETGETC+ + SVP+KNW+ +K+HVW+GESM GFQF YG +
Sbjct: 1292 FCNMETGETCLNASPGSVPRKNWWTDSGA-EKKHVWFGESMDGGFQFGYGNPELPEDVLD 1350
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+QL FLRL+S+ ASQNITYHCKNS+AYMD +GN+KKAL L GSNE E +AEGNS+FTY+
Sbjct: 1351 VQLAFLRLLSSRASQNITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYT 1410
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
V+ DGCT HTG WGKTV EY+T K RLPIID+AP DVG PDQEFG+D+ PVCFL
Sbjct: 1411 VLEDGCTKHTGEWGKTVFEYRTRKAVRLPIIDIAPYDVGGPDQEFGVDVGPVCFL 1465
Score = 57.0 bits (136), Expect = 6e-08
Identities = 30/59 (50%), Positives = 31/59 (52%)
Frame = +1
Query: 1 VGPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSG 177
VGPAGKSGDRGET DKGETGE+G GIKGHRGF G
Sbjct: 1055 VGPAGKSGDRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPG 1113
>ref|NP_001003187.1| collagen alpha-2(I) chain precursor [Canis lupus familiaris].
Length = 1366
Score = 332 bits (850), Expect = 1e-90
Identities = 147/234 (62%), Positives = 186/234 (79%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
EVD TLKSL+ QIE + +PEGSRKNPARTCRDL++ H +W SG YWIDPNQGC +DAIKV
Sbjct: 1134 EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKV 1193
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
+C+ TGETC+ ++P KNWY +N K K+H+W GE++ G QFEY EG ++A
Sbjct: 1194 YCDFSTGETCIRAQPENIPAKNWY--RNSKVKKHIWLGETINGGTQFEYNVEGVTTKEMA 1251
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
QL F+RL++ ASQNITYHCKNS+AYMD++TGNLKKA++LQGSN++E+ AEGNSRFTY+
Sbjct: 1252 TQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYT 1311
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCF 1221
V+ DGC+ T W KT+IEYKT K SRLPI+D+APLD+G DQEF +D+ PVCF
Sbjct: 1312 VLVDGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQEFRVDVGPVCF 1365
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,164,349
Number of extensions: 1445489
Number of successful extensions: 7756
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 7572
Number of HSP's successfully gapped: 33
Length of query: 632
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 523
Effective length of database: 15,240,880
Effective search space: 7970980240
Effective search space used: 7970980240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
NEIEIRAEGNSRFTYS 1059
+QL FLRL+S+ ASQNITYHCKNS+AYMD +GN+KKAL L GSNE E +AEGNS+FTY+
Sbjct: 1352 VQLAFLRLLSSRASQNITYHCKNSIAYMDHASGNVKKALKLMGSNEGEFKAEGNSKFTYT 1411
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
V+ DGCT HTG WGKTV +Y+T K RLPI+D+AP D+G PDQEFG D+ PVCFL
Sbjct: 1412 VLEDGCTKHTGEWGKTVFQYQTRKAVRLPIVDIAPYDIGGPDQEFGADIGPVCFL 1466
Score = 57.4 bits (137), Expect = 4e-08
Identities = 30/59 (50%), Positives = 31/59 (52%)
Frame = +1
Query: 1 VGPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSG 177
VGPAGKSGDRGET DKGETGE+G GIKGHRGF G
Sbjct: 1055 VGPAGKSGDRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGAMGIKGHRGFPG 1113
>ref|NP_776945.1| collagen alpha-2(I) chain precursor [Bos taurus].
Length = 1364
Score = 328 bits (841), Expect = 1e-89
Identities = 146/234 (62%), Positives = 184/234 (78%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
EVD TLKSL+ QIE + +PEGSRKNPARTCRDL++ H +W SG YWIDPNQGC +DAIKV
Sbjct: 1132 EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKV 1191
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
+C+ TGETC+ +P KNWY +N K K+HVW GE++ G QFEY EG ++A
Sbjct: 1192 YCDFSTGETCIRAQPEDIPVKNWY--RNSKAKKHVWVGETINGGTQFEYNVEGVTTKEMA 1249
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
QL F+RL++ ASQNITYHCKNS+AYMD++TGNLKKA++LQGSN++E+ AEGNSRFTY+
Sbjct: 1250 TQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYT 1309
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCF 1221
V+ DGC+ T W KT+IEYKT K SRLPI+D+APLD+G DQE +++ PVCF
Sbjct: 1310 VLVDGCSKKTNEWQKTIIEYKTNKPSRLPILDIAPLDIGGADQEIRLNIGPVCF 1363
>ref|NP_001159981.1| collagen alpha-1(XI) chain [Bos taurus].
Length = 1817
Score = 189 bits (481), Expect = 6e-48
Identities = 101/236 (42%), Positives = 145/236 (61%), Gaps = 1/236 (0%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ +L SL Q IE+++ P G++ NPARTC+DL++ H D+ GEYWIDPNQGC+ D+ KV
Sbjct: 1589 EIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKV 1648
Query: 700 FCNMET-GETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
+CN + GETC+YP + S + IS PK+K W+ E EG+ +
Sbjct: 1649 YCNFTSGGETCIYPDKKS---EGVRISSWPKEKPGSWFSEFKRGKLLSYLDIEGN--SIN 1703
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+Q+TFL+L++ A QN TY+C SVA+ D +G+ KAL GSN+ E+ + N
Sbjct: 1704 MVQMTFLKLLTASARQNFTYYCHQSVAWYDMSSGSYDKALRFLGSNDEEMSYDNNPYI-- 1761
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
++DGC S G + KTVIE T K ++PI+DV D G +Q+FG ++ PVCFL
Sbjct: 1762 KALFDGCASRKG-YEKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFL 1816
>ref|XP_002691766.1| PREDICTED: collagen alpha-1(V) chain-like [Bos taurus].
Length = 990
Score = 186 bits (471), Expect = 8e-47
Identities = 99/236 (41%), Positives = 145/236 (61%), Gaps = 1/236 (0%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ +L SL +IE ++ P G+ +NPARTC+DL++CH D+ GEYW+DPNQGC+ D+ KV
Sbjct: 762 EIFGSLNSLKLEIEQMKRPLGTPQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKV 821
Query: 700 FCNMET-GETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
+CN G TCV+P + S + I+ PK+ W+ E G Y +P V
Sbjct: 822 YCNFTAGGSTCVFPDKKSEGAR---ITSWPKENPGSWFSE-FKRGKLLSYVDAEGNPVGV 877
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+Q+TFLRL+S A QNITY+C SVA+ D TG+ KA+ GSN+ E+ + NS +
Sbjct: 878 -VQMTFLRLLSASAHQNITYNCYQSVAWQDAATGSYDKAMRFLGSNDEEMSYD-NSPYIR 935
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+++ DGC + G + KTV+E T K ++PI+D+ D G Q+FG ++ P CFL
Sbjct: 936 ALV-DGCATKKG-YQKTVLEIDTPKVEQVPIVDIMFNDFGEASQKFGFEVGPACFL 989
>ref|NP_001192553.1| collagen alpha-3(V) chain [Bos taurus].
Length = 1745
Score = 166 bits (419), Expect = 9e-41
Identities = 90/237 (37%), Positives = 135/237 (56%), Gaps = 3/237 (1%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
EV ++ SLS ++E +R P G+ + P C++L H GEYWIDPNQGC DA++V
Sbjct: 1515 EVLASMASLSFELEQLRRPPGTAERPGLVCKELHRSHPHLPDGEYWIDPNQGCARDALRV 1574
Query: 700 FCNMET-GETCVYPTQ--PSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPA 870
FCN GETC+YP + +V +W K+K WY + G +F Y + A
Sbjct: 1575 FCNFTAGGETCLYPDKKFETVKLASW-----SKEKPGGWY-STFRRGKKFSY-VDADGAA 1627
Query: 871 DVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRF 1050
+QLTFL+L+S A Q+ T+ C+NS A++D+ G+ ++ G+N E+ +
Sbjct: 1628 VSVVQLTFLKLLSATARQSFTFTCQNSAAWLDEAAGDHSRSARFLGANGEEVSFNQMAAA 1687
Query: 1051 TYSVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCF 1221
T +V YDGC G KT+ E+ +++ LP++DVA D G +Q+FG +L PVCF
Sbjct: 1688 TITVPYDGCRLRKGQ-SKTLFEFSSSRVGFLPLLDVAAADFGQTNQKFGFELGPVCF 1743
>ref|XP_002688885.1| PREDICTED: collagen, type V, alpha 3 [Bos taurus].
Length = 1745
Score = 166 bits (419), Expect = 9e-41
Identities = 90/237 (37%), Positives = 135/237 (56%), Gaps = 3/237 (1%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
EV ++ SLS ++E +R P G+ + P C++L H GEYWIDPNQGC DA++V
Sbjct: 1515 EVLASMASLSFELEQLRRPPGTAERPGLVCKELHRSHPHLPDGEYWIDPNQGCARDALRV 1574
Query: 700 FCNMET-GETCVYPTQ--PSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPA 870
FCN GETC+YP + +V +W K+K WY + G +F Y + A
Sbjct: 1575 FCNFTAGGETCLYPDKKFETVKLASW-----SKEKPGGWY-STFRRGKKFSY-VDADGAA 1627
Query: 871 DVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRF 1050
+QLTFL+L+S A Q+ T+ C+NS A++D+ G+ ++ G+N E+ +
Sbjct: 1628 VSVVQLTFLKLLSATARQSFTFTCQNSAAWLDEAAGDHSRSARFLGANGEEVSFNQMAAA 1687
Query: 1051 TYSVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCF 1221
T +V YDGC G KT+ E+ +++ LP++DVA D G +Q+FG +L PVCF
Sbjct: 1688 TITVPYDGCRLRKGQ-SKTLFEFSSSRVGFLPLLDVAAADFGQTNQKFGFELGPVCF 1743
>ref|NP_001039664.1| collagen alpha-2(XI) chain precursor [Bos taurus].
Length = 1736
Score = 149 bits (376), Expect = 8e-36
Identities = 91/236 (38%), Positives = 125/236 (52%), Gaps = 1/236 (0%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ +L SL ++IE +R P G++ +PARTC+DLK+CH + GEYW+DPNQGC DA +V
Sbjct: 1542 EIFGSLDSLREEIEQMRRPMGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRV 1601
Query: 700 FCNMETG-ETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
FCN G ETCV P D QF Y P V
Sbjct: 1602 FCNFTAGGETCVTPRD---------------------------DVTQFSYVDSEGAPVGV 1634
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+QLTFLRL+S A QNI+Y C + Q LK L+G+NE E+ E +
Sbjct: 1635 -VQLTFLRLLSVSARQNISYPCSG-----EAQDSPLK----LRGANEDELSPETSPYI-- 1682
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
I DGC + G +TV+E +T +LP++D + ++GAP + G+ L PVCF+
Sbjct: 1683 KEIRDGCQTQQG---RTVLEVRTPVLEQLPVLDASFSELGAPPRRGGVLLGPVCFM 1735
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,850,276
Number of extensions: 1481322
Number of successful extensions: 7694
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 7478
Number of HSP's successfully gapped: 19
Length of query: 632
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 524
Effective length of database: 14,107,870
Effective search space: 7392523880
Effective search space used: 7392523880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012507
(1896 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362102.1| PREDICTED: LOW QUALITY PROTEIN: collagen alp... 423 e-118
Alignment gi|NP_001230226.1| collagen alpha-1(III) chain [Sus scrofa]. 333 2e-91
Alignment gi|NP_001230584.1| collagen, type I, alpha 2 [Sus scrofa]. 330 2e-90
Alignment gi|XP_003361043.1| PREDICTED: collagen alpha-1(II) chain-like, ... 310 2e-84
Alignment gi|NP_001098759.1| collagen alpha-2(V) chain [Sus scrofa]. 300 2e-81
Alignment gi|XP_003355328.1| PREDICTED: collagen alpha-1(XI) chain isofor... 191 1e-48
Alignment gi|XP_003355327.1| PREDICTED: collagen alpha-1(XI) chain isofor... 191 1e-48
Alignment gi|XP_003355326.1| PREDICTED: collagen alpha-1(XI) chain isofor... 191 1e-48
Alignment gi|XP_001929407.3| PREDICTED: collagen alpha-1(XI) chain isofor... 191 1e-48
Alignment gi|XP_003353759.1| PREDICTED: collagen alpha-1(V) chain-like [S... 186 3e-47
>ref|XP_003362102.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(I) chain [Sus
scrofa].
Length = 1317
Score = 423 bits (1088), Expect = e-118
Identities = 215/276 (77%), Positives = 218/276 (78%), Gaps = 13/276 (4%)
Frame = +1
Query: 436 PQPPQEKAHDGG---RYYXXXXXXXXXXXXLEVDTTLKSLSQQIENIRSPEGSRKNPART 606
P P+ + D G Y LEVDTTLKSLSQQIENIRSPEGSRKNPART
Sbjct: 1042 PPGPRGRTGDAGPVXXXYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPART 1101
Query: 607 CRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVPQKNWYISKNP 786
CRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVPQKNWYISKNP
Sbjct: 1102 CRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVPQKNWYISKNP 1161
Query: 787 KDKRHVWYGESMTDGFQFE----YGGEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSV 954
KDKRHVWYGESMTDGFQ +G LRLMSTEASQNITYHCKNSV
Sbjct: 1162 KDKRHVWYGESMTDGFQVRELEPLFQDGLAQGSTGXXXXXLRLMSTEASQNITYHCKNSV 1221
Query: 955 AYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVIYDGCT------SHTGAWGKTVIE 1116
AYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVIYDGCT G W IE
Sbjct: 1222 AYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVIYDGCTVSPAGPPFIGLWXXXXIE 1281
Query: 1117 YKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
YKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL
Sbjct: 1282 YKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1317
Score = 61.6 bits (148), Expect = 1e-09
Identities = 35/66 (53%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = +1
Query: 1 VGPAGKSGDRGE-----TXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHR 165
VGPAGKSGDRGE DKGETGEQGDRGIKGHR
Sbjct: 930 VGPAGKSGDRGEXRLWLAGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHR 989
Query: 166 GFSGLQ 183
GFSGLQ
Sbjct: 990 GFSGLQ 995
>ref|NP_001230226.1| collagen alpha-1(III) chain [Sus scrofa].
Length = 1466
Score = 333 bits (855), Expect = 2e-91
Identities = 150/235 (63%), Positives = 186/235 (79%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ T+LKS++ QIE++ SP+GSRKNPAR CRDLK CH + KSGEYW+DPNQGC +DAIKV
Sbjct: 1233 EIMTSLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKMDAIKV 1292
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNMETGETC+ + +VP+KNW+ +K++VW+GESM GFQF YG +
Sbjct: 1293 FCNMETGETCISASPSTVPRKNWWTDSGA-EKKYVWFGESMNGGFQFSYGNPELPEDVLD 1351
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+QL FLRL+S+ ASQNITYHCKNS+AYM+ +GN+KKAL L GSNE E +AEGNS+FTY+
Sbjct: 1352 VQLAFLRLLSSRASQNITYHCKNSIAYMEHASGNVKKALRLMGSNEGEFKAEGNSKFTYT 1411
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
V+ DGCT HTG WGKTV EY+T K RLPI+D+AP D+G PDQEFG D+ PVCFL
Sbjct: 1412 VLEDGCTKHTGEWGKTVFEYRTRKAVRLPIVDIAPYDIGGPDQEFGADIGPVCFL 1466
Score = 56.6 bits (135), Expect = 5e-08
Identities = 29/59 (49%), Positives = 31/59 (52%)
Frame = +1
Query: 1 VGPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSG 177
VGPAGK+GDRGET DKGETGE+G GIKGHRGF G
Sbjct: 1056 VGPAGKNGDRGETGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGANGIKGHRGFPG 1114
>ref|NP_001230584.1| collagen, type I, alpha 2 [Sus scrofa].
Length = 1366
Score = 330 bits (846), Expect = 2e-90
Identities = 147/234 (62%), Positives = 185/234 (79%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
EVD TLKSL+ QIE + +PEGSRKNPARTCRDL++ H +W SG YWIDPNQGC +DAIKV
Sbjct: 1134 EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKV 1193
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
+C+ TGETC+ ++P KNWY +N K K+HVW GE++ G QFEY EG ++A
Sbjct: 1194 YCDFSTGETCIRAQPENIPAKNWY--RNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMA 1251
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
QL F+RL++ ASQNITYHCKNS+AYMD++TGNLKKA++LQGSN++E+ AEGNSRFTY+
Sbjct: 1252 TQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYT 1311
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCF 1221
V+ DGC+ T W KT+IEYKT K SRLPI+D+APLD+G DQE +D+ PVCF
Sbjct: 1312 VLVDGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCF 1365
>ref|XP_003361043.1| PREDICTED: collagen alpha-1(II) chain-like, partial [Sus scrofa].
Length = 1540
Score = 310 bits (793), Expect = 2e-84
Identities = 143/235 (60%), Positives = 177/235 (75%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
EVD TLKS IRSPEGSRKNPARTCRD+ C +G+YWIDPNQGC LDA+KV
Sbjct: 1308 EVDATLKSXXXXXXXIRSPEGSRKNPARTCRDMGCCLPP-PAGDYWIDPNQGCTLDAMKV 1366
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNM + SVP+KNW+ SK+ KDK+H+W+GE++ GF F YG + P
Sbjct: 1367 FCNMXXXXXXXXXSPASVPKKNWWSSKS-KDKKHIWFGETINGGFHFSYGDDNLAPNTAN 1425
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+Q+TFLRL+STE SQNITYHCKNS+AY+D+ GNLKKALL+QGSN++EIRAEGNSRFTY+
Sbjct: 1426 VQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYT 1485
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
V+ DGCT W + Y++ KTSRLPIID+AP+D+G P+QEFG+D+ PVCFL
Sbjct: 1486 VLKDGCTVSQAGWVTRAMSYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL 1540
Score = 52.8 bits (125), Expect = 7e-07
Identities = 26/60 (43%), Positives = 29/60 (48%)
Frame = +1
Query: 4 GPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSGLQ 183
GP GK GDRG DKGE GE G+RG+KGHRGF+GLQ
Sbjct: 1134 GPTGKQGDRGPQGAQGPMGPAGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQ 1193
>ref|NP_001098759.1| collagen alpha-2(V) chain [Sus scrofa].
Length = 1499
Score = 300 bits (767), Expect = 2e-81
Identities = 144/234 (61%), Positives = 180/234 (76%)
Frame = +1
Query: 523 VDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVF 702
V TLKSLS QIE +RSP+GS+K+PARTC DLK+CHS +SGEYWIDPNQG DAIKV+
Sbjct: 1268 VHATLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHSAKQSGEYWIDPNQGSAEDAIKVY 1327
Query: 703 CNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVAI 882
CNMETGETC+ S+P+K W+ SK+P D + VWYG M G QF YG S A +
Sbjct: 1328 CNMETGETCISANPYSIPRKMWWASKSP-DYKPVWYGLDMNRGSQFVYGDHQSPNAAIT- 1385
Query: 883 QLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSV 1062
Q+TFLRL+S EASQNITY CKNSV YMD Q NLKKA++L+GSN++EI+AEGN RF Y+V
Sbjct: 1386 QMTFLRLLSKEASQNITYICKNSVGYMDDQAKNLKKAVVLKGSNDLEIKAEGNVRFRYTV 1445
Query: 1063 IYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
++D C+ G GKT+ EY+T +RLPIID+AP+DVG+ DQEFG+++ PVCF+
Sbjct: 1446 LHDTCSKRNGNVGKTIFEYRTQNVARLPIIDLAPVDVGSTDQEFGVEIGPVCFV 1499
>ref|XP_003355328.1| PREDICTED: collagen alpha-1(XI) chain isoform 4 [Sus scrofa].
Length = 1767
Score = 191 bits (485), Expect = 1e-48
Identities = 101/236 (42%), Positives = 144/236 (61%), Gaps = 1/236 (0%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ +L SL Q IE+++ P G++ NPARTC+DL++ H D+ GEYWIDPNQGC+ D+ KV
Sbjct: 1539 EIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKV 1598
Query: 700 FCNMET-GETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
+CN + GETC+YP + S + IS PK+K W+ E EG+ +
Sbjct: 1599 YCNFTSGGETCIYPDKKS---EGVRISSWPKEKPGSWFSEFKRGKLLSYLDVEGN--SIN 1653
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+Q+TFL+L++ A QN TYHC S A+ D +G+ KAL GSN+ E+ + N
Sbjct: 1654 MVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNPYI-- 1711
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+YDGC S G + KTVIE T K ++P++DV D G +Q+FG ++ PVCFL
Sbjct: 1712 KALYDGCASRKG-YEKTVIEINTPKIDQVPVVDVMINDFGDQNQKFGFEVGPVCFL 1766
>ref|XP_003355327.1| PREDICTED: collagen alpha-1(XI) chain isoform 3 [Sus scrofa].
Length = 1690
Score = 191 bits (485), Expect = 1e-48
Identities = 101/236 (42%), Positives = 144/236 (61%), Gaps = 1/236 (0%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ +L SL Q IE+++ P G++ NPARTC+DL++ H D+ GEYWIDPNQGC+ D+ KV
Sbjct: 1462 EIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKV 1521
Query: 700 FCNMET-GETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
+CN + GETC+YP + S + IS PK+K W+ E EG+ +
Sbjct: 1522 YCNFTSGGETCIYPDKKS---EGVRISSWPKEKPGSWFSEFKRGKLLSYLDVEGN--SIN 1576
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+Q+TFL+L++ A QN TYHC S A+ D +G+ KAL GSN+ E+ + N
Sbjct: 1577 MVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNPYI-- 1634
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+YDGC S G + KTVIE T K ++P++DV D G +Q+FG ++ PVCFL
Sbjct: 1635 KALYDGCASRKG-YEKTVIEINTPKIDQVPVVDVMINDFGDQNQKFGFEVGPVCFL 1689
>ref|XP_003355326.1| PREDICTED: collagen alpha-1(XI) chain isoform 2 [Sus scrofa].
Length = 1818
Score = 191 bits (485), Expect = 1e-48
Identities = 101/236 (42%), Positives = 144/236 (61%), Gaps = 1/236 (0%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ +L SL Q IE+++ P G++ NPARTC+DL++ H D+ GEYWIDPNQGC+ D+ KV
Sbjct: 1590 EIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKV 1649
Query: 700 FCNMET-GETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
+CN + GETC+YP + S + IS PK+K W+ E EG+ +
Sbjct: 1650 YCNFTSGGETCIYPDKKS---EGVRISSWPKEKPGSWFSEFKRGKLLSYLDVEGN--SIN 1704
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+Q+TFL+L++ A QN TYHC S A+ D +G+ KAL GSN+ E+ + N
Sbjct: 1705 MVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNPYI-- 1762
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+YDGC S G + KTVIE T K ++P++DV D G +Q+FG ++ PVCFL
Sbjct: 1763 KALYDGCASRKG-YEKTVIEINTPKIDQVPVVDVMINDFGDQNQKFGFEVGPVCFL 1817
>ref|XP_001929407.3| PREDICTED: collagen alpha-1(XI) chain isoform 1 [Sus scrofa].
Length = 1806
Score = 191 bits (485), Expect = 1e-48
Identities = 101/236 (42%), Positives = 144/236 (61%), Gaps = 1/236 (0%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ +L SL Q IE+++ P G++ NPARTC+DL++ H D+ GEYWIDPNQGC+ D+ KV
Sbjct: 1578 EIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKV 1637
Query: 700 FCNMET-GETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
+CN + GETC+YP + S + IS PK+K W+ E EG+ +
Sbjct: 1638 YCNFTSGGETCIYPDKKS---EGVRISSWPKEKPGSWFSEFKRGKLLSYLDVEGN--SIN 1692
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+Q+TFL+L++ A QN TYHC S A+ D +G+ KAL GSN+ E+ + N
Sbjct: 1693 MVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNPYI-- 1750
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+YDGC S G + KTVIE T K ++P++DV D G +Q+FG ++ PVCFL
Sbjct: 1751 KALYDGCASRKG-YEKTVIEINTPKIDQVPVVDVMINDFGDQNQKFGFEVGPVCFL 1805
>ref|XP_003353759.1| PREDICTED: collagen alpha-1(V) chain-like [Sus scrofa].
Length = 1878
Score = 186 bits (473), Expect = 3e-47
Identities = 99/236 (41%), Positives = 145/236 (61%), Gaps = 1/236 (0%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ +L SL +IE ++ P G+++NPARTC+DL++CH D+ GEYW+DPNQGC+ D+ KV
Sbjct: 1650 EIFGSLNSLKLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKV 1709
Query: 700 FCNMET-GETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
+CN G TCV+P + S + I+ PK+ W+ E G Y +P V
Sbjct: 1710 YCNFTAGGSTCVFPDKKSEGAR---ITSWPKENPGSWFSE-FKRGKLLSYVDAEGNPVGV 1765
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+Q+TFLRL+S A QNITY+C SVA+ D TG KA+ GSN+ E+ + NS +
Sbjct: 1766 -VQMTFLRLLSASAHQNITYNCYQSVAWQDAATGGYDKAMRFLGSNDEEMSYD-NSPYIR 1823
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+++ DGC + G + KTV+E T K ++PI+D+ D G Q+FG ++ P CFL
Sbjct: 1824 ALV-DGCATRKG-YQKTVLEIDTPKVEQVPIVDIMFNDFGDASQKFGFEVGPACFL 1877
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,512,310
Number of extensions: 1125058
Number of successful extensions: 5031
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4876
Number of HSP's successfully gapped: 21
Length of query: 632
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 527
Effective length of database: 8,729,747
Effective search space: 4600576669
Effective search space used: 4600576669
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012507
(1896 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031768.2| collagen alpha-1(I) chain precursor [Mus muscul... 503 e-142
Alignment gi|NP_001106987.2| collagen alpha-1(II) chain isoform 2 precurs... 376 e-104
Alignment gi|NP_112440.2| collagen alpha-1(II) chain isoform 1 precursor ... 376 e-104
Alignment gi|NP_034060.2| collagen alpha-1(III) chain precursor [Mus musc... 335 1e-91
Alignment gi|NP_031769.2| collagen alpha-2(I) chain precursor [Mus muscul... 315 1e-85
Alignment gi|NP_031763.2| collagen alpha-2(V) chain precursor [Mus muscul... 294 2e-79
Alignment gi|NP_031755.2| collagen alpha-1(XI) chain precursor [Mus muscu... 190 4e-48
Alignment gi|NP_056549.2| collagen alpha-1(V) chain precursor [Mus muscul... 187 3e-47
Alignment gi|NP_058615.1| collagen alpha-3(V) chain [Mus musculus]. 160 3e-39
Alignment gi|NP_034056.1| collagen alpha-2(XI) chain [Mus musculus]. 149 7e-36
>ref|NP_031768.2| collagen alpha-1(I) chain precursor [Mus musculus].
Length = 1453
Score = 503 bits (1294), Expect = e-142
Identities = 233/269 (86%), Positives = 247/269 (91%)
Frame = +1
Query: 418 FDFSFLPQPPQEKAHDGGRYYXXXXXXXXXXXXLEVDTTLKSLSQQIENIRSPEGSRKNP 597
+DFSFLPQPPQEK+ DGGRYY LEVDTTLKSLSQQIENIRSPEGSRKNP
Sbjct: 1185 YDFSFLPQPPQEKSQDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNP 1244
Query: 598 ARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVPQKNWYIS 777
ARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV+CNMETG+TCV+PTQPSVPQKNWYIS
Sbjct: 1245 ARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVYCNMETGQTCVFPTQPSVPQKNWYIS 1304
Query: 778 KNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVA 957
NPK+K+HVW+GESMTDGF FEYG EGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVA
Sbjct: 1305 PNPKEKKHVWFGESMTDGFPFEYGSEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVA 1364
Query: 958 YMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVIYDGCTSHTGAWGKTVIEYKTTKTS 1137
YMDQQTGNLKKALLLQGSNEIE+R EGNSRFTYS + DGCTSHTG WGKTVIEYKTTKTS
Sbjct: 1365 YMDQQTGNLKKALLLQGSNEIELRGEGNSRFTYSTLVDGCTSHTGTWGKTVIEYKTTKTS 1424
Query: 1138 RLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
RLPIIDVAPLD+GAPDQEFG+D+ P CF+
Sbjct: 1425 RLPIIDVAPLDIGAPDQEFGLDIGPACFV 1453
Score = 68.6 bits (166), Expect = 2e-11
Identities = 35/61 (57%), Positives = 36/61 (59%)
Frame = +1
Query: 1 VGPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSGL 180
VGPAGK+GDRGET DKGETGEQGDRGIKGHRGFSGL
Sbjct: 1046 VGPAGKNGDRGETGPAGPAGPIGPAGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGL 1105
Query: 181 Q 183
Q
Sbjct: 1106 Q 1106
>ref|NP_001106987.2| collagen alpha-1(II) chain isoform 2 precursor [Mus musculus].
Length = 1419
Score = 376 bits (966), Expect = e-104
Identities = 165/236 (69%), Positives = 203/236 (86%)
Frame = +1
Query: 517 LEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIK 696
+EVD TLKSL+ QIE+IRSP+GSRKNPARTC+DLK+CH +WKSG+YWIDPNQGC LDA+K
Sbjct: 1185 VEVDATLKSLNNQIESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMK 1244
Query: 697 VFCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
VFCNMETGETCVYP +VP+KNW+ SK+ K+K+H+W+GE+M GF F YG P
Sbjct: 1245 VFCNMETGETCVYPNPATVPRKNWWSSKS-KEKKHIWFGETMNGGFHFSYGDGNLAPNTA 1303
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+Q+TFLRL+STE SQNITYHCKNS+AY+D+ GNLKKALL+QGSN++E+RAEGNSRFTY
Sbjct: 1304 NVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTY 1363
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+ + DGCT HTG WGKTVIEY++ KTSRLPIID+AP+D+G +QEFG+D+ PVCFL
Sbjct: 1364 TALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGAEQEFGVDIGPVCFL 1419
Score = 58.2 bits (139), Expect = 2e-08
Identities = 28/60 (46%), Positives = 32/60 (53%)
Frame = +1
Query: 4 GPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSGLQ 183
GP GK GDRGE DKGE+GEQG+RG+KGHRGF+GLQ
Sbjct: 1012 GPTGKQGDRGEAGAQGPMGPSGPAGARGIAGPQGPRGDKGESGEQGERGLKGHRGFTGLQ 1071
>ref|NP_112440.2| collagen alpha-1(II) chain isoform 1 precursor [Mus musculus].
Length = 1487
Score = 376 bits (966), Expect = e-104
Identities = 165/236 (69%), Positives = 203/236 (86%)
Frame = +1
Query: 517 LEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIK 696
+EVD TLKSL+ QIE+IRSP+GSRKNPARTC+DLK+CH +WKSG+YWIDPNQGC LDA+K
Sbjct: 1253 VEVDATLKSLNNQIESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMK 1312
Query: 697 VFCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
VFCNMETGETCVYP +VP+KNW+ SK+ K+K+H+W+GE+M GF F YG P
Sbjct: 1313 VFCNMETGETCVYPNPATVPRKNWWSSKS-KEKKHIWFGETMNGGFHFSYGDGNLAPNTA 1371
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+Q+TFLRL+STE SQNITYHCKNS+AY+D+ GNLKKALL+QGSN++E+RAEGNSRFTY
Sbjct: 1372 NVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTY 1431
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+ + DGCT HTG WGKTVIEY++ KTSRLPIID+AP+D+G +QEFG+D+ PVCFL
Sbjct: 1432 TALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGAEQEFGVDIGPVCFL 1487
Score = 58.2 bits (139), Expect = 2e-08
Identities = 28/60 (46%), Positives = 32/60 (53%)
Frame = +1
Query: 4 GPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSGLQ 183
GP GK GDRGE DKGE+GEQG+RG+KGHRGF+GLQ
Sbjct: 1080 GPTGKQGDRGEAGAQGPMGPSGPAGARGIAGPQGPRGDKGESGEQGERGLKGHRGFTGLQ 1139
>ref|NP_034060.2| collagen alpha-1(III) chain precursor [Mus musculus].
Length = 1464
Score = 335 bits (858), Expect = 1e-91
Identities = 151/235 (64%), Positives = 187/235 (79%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ ++LKS++ QIE++ SP+GSRKNPAR CRDLK CH + KSGEYW+DPNQGC +DAIKV
Sbjct: 1231 EIMSSLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKMDAIKV 1290
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNMETGETC+ + +VP+K+W+ +K+HVW+GESM GFQF YG V
Sbjct: 1291 FCNMETGETCINASPMTVPRKHWWTDSGA-EKKHVWFGESMNGGFQFSYGPPDLPEDVVD 1349
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+QL FLRL+S+ ASQNITYHCKNS+AYMDQ +GN+KK+L L GSNE E +AEGNS+FTY+
Sbjct: 1350 VQLAFLRLLSSRASQNITYHCKNSIAYMDQASGNVKKSLKLMGSNEGEFKAEGNSKFTYT 1409
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
V+ DGCT HTG W KTV EY+T K RLPIID+AP D+G PDQEFG+D+ PVCFL
Sbjct: 1410 VLEDGCTKHTGEWSKTVFEYQTRKAMRLPIIDIAPYDIGGPDQEFGVDIGPVCFL 1464
Score = 57.4 bits (137), Expect = 4e-08
Identities = 29/59 (49%), Positives = 31/59 (52%)
Frame = +1
Query: 1 VGPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSG 177
VGP+GKSGDRGET DKGETGE+G GIKGHRGF G
Sbjct: 1054 VGPSGKSGDRGETGPAGPSGAPGPAGARGAPGPQGPRGDKGETGERGSNGIKGHRGFPG 1112
>ref|NP_031769.2| collagen alpha-2(I) chain precursor [Mus musculus].
Length = 1372
Score = 315 bits (806), Expect = 1e-85
Identities = 141/234 (60%), Positives = 179/234 (76%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
EVD TLKSL+ QIE + +PEGSRKNPARTCRDL++ H +W S YWIDPNQGC +DAIKV
Sbjct: 1140 EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWNSDYYWIDPNQGCTMDAIKV 1199
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
+C+ TGETC+ + P KN Y + +HVW GE++ G QFEY EG ++A
Sbjct: 1200 YCDFSTGETCIQAQPVNTPAKNSY--SRAQANKHVWLGETINGGSQFEYNVEGVSSKEMA 1257
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
QL F+RL++ ASQNITYHCKNS+AY+D++TG+L KA+LLQGSN++E+ AEGNSRFTYS
Sbjct: 1258 TQLAFMRLLANRASQNITYHCKNSIAYLDEETGSLNKAVLLQGSNDVELVAEGNSRFTYS 1317
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCF 1221
V+ DGC+ T WGKT+IEYKT K SRLP +D+APLD+G DQEF +++ PVCF
Sbjct: 1318 VLVDGCSKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFRVEVGPVCF 1371
>ref|NP_031763.2| collagen alpha-2(V) chain precursor [Mus musculus].
Length = 1497
Score = 294 bits (752), Expect = 2e-79
Identities = 139/234 (59%), Positives = 174/234 (74%)
Frame = +1
Query: 523 VDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVF 702
+ TLKSLS QIE +RSP+GS+K+PARTC DLK+CH +SGEYWIDPNQG DAIKV+
Sbjct: 1266 IHVTLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHPTKQSGEYWIDPNQGSAEDAIKVY 1325
Query: 703 CNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVAI 882
CNMETGETC+ SVP+K W+ SK+P D + VWYG M G QF YG S P
Sbjct: 1326 CNMETGETCISANPASVPRKTWWASKSP-DNKPVWYGLDMNRGSQFTYGDYQS-PNTAIT 1383
Query: 883 QLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSV 1062
Q+TFLRL+S EASQN+TY C+N+V YMD Q NLKKA++L+GSN++EI+ EGN RF Y+V
Sbjct: 1384 QMTFLRLLSKEASQNLTYICRNTVGYMDDQAKNLKKAVVLKGSNDLEIKGEGNIRFRYTV 1443
Query: 1063 IYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+ D C+ G GKT+ EY+T +RLPIIDV P+D+G DQEFG+D+ PVCF+
Sbjct: 1444 LQDTCSKRNGNVGKTIFEYRTQNVARLPIIDVGPVDIGNADQEFGLDIGPVCFM 1497
>ref|NP_031755.2| collagen alpha-1(XI) chain precursor [Mus musculus].
Length = 1804
Score = 190 bits (482), Expect = 4e-48
Identities = 103/236 (43%), Positives = 142/236 (60%), Gaps = 1/236 (0%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ +L SL Q IE+++ P G++ NPARTC+DL++ H D+ GEYWIDPNQGC+ D+ KV
Sbjct: 1576 EIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKV 1635
Query: 700 FCNMET-GETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
+CN GETC+YP + S + IS PK+K WY E EG+ +
Sbjct: 1636 YCNFTAGGETCIYPDKKS---EGVRISSWPKEKPGSWYSEFKRGKLLSYLDVEGN--SIN 1690
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+Q+TFL+L++ A QN TY+C S A+ D +G+ KAL GSN+ E+ E N
Sbjct: 1691 MVQMTFLKLLTASARQNFTYNCHQSAAWYDVLSGSYDKALRFLGSNDEEMSYENNPHI-- 1748
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+YDGC S G + KTVIE T K ++PIIDV D G +Q+FG ++ P CFL
Sbjct: 1749 KALYDGCASRKG-YEKTVIEINTPKIDQVPIIDVMINDFGDQNQKFGFEVGPACFL 1803
>ref|NP_056549.2| collagen alpha-1(V) chain precursor [Mus musculus].
Length = 1838
Score = 187 bits (474), Expect = 3e-47
Identities = 97/236 (41%), Positives = 142/236 (60%), Gaps = 1/236 (0%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ +L SL +IE ++ P G+++NPARTC+DL++CH D+ GEYW+DPNQGC+ D+ KV
Sbjct: 1610 EIFGSLNSLKLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKV 1669
Query: 700 FCNMET-GETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
+CN G TCV+P + S + I+ PK+ W+ E G Y +P V
Sbjct: 1670 YCNFTAGGSTCVFPDKKSEGAR---ITSWPKENPGSWFSE-FKRGKLLSYVDAEGNPVGV 1725
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+Q+TFLRL+S A QN+TY+C SVA+ D TG+ KA+ GSN+ E+ + N
Sbjct: 1726 -VQMTFLRLLSASAHQNVTYNCYQSVAWQDAATGSYDKAIRFLGSNDEEMSYDNNPYI-- 1782
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+ DGC + G + KTV+E T K ++PI+D+ D G Q+FG ++ P CFL
Sbjct: 1783 RALVDGCATKKG-YQKTVLEIDTPKVEQVPIVDIMFNDFGEASQKFGFEVGPACFL 1837
>ref|NP_058615.1| collagen alpha-3(V) chain [Mus musculus].
Length = 1739
Score = 160 bits (405), Expect = 3e-39
Identities = 91/237 (38%), Positives = 134/237 (56%), Gaps = 3/237 (1%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
EV +L SLS +++ ++ P G+ ++P CR+L H GEYWIDPNQGC DA KV
Sbjct: 1510 EVMASLNSLSLELQQLQRPLGTAESPGLMCRELHRDHPHLPDGEYWIDPNQGCARDAFKV 1569
Query: 700 FCNMET-GETCVYPTQ--PSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPA 870
FCN GETC+YP + +V +W ++K WY + G +F Y P
Sbjct: 1570 FCNFTAGGETCLYPDKKFETVKLASW-----SREKPGGWY-STFRRGKKFSYVDADGSPV 1623
Query: 871 DVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRF 1050
+V +QLTFL+L+S A Q TY C+NSVA++D+ G+ + ++ QG+N E+ +
Sbjct: 1624 NV-VQLTFLKLLSAAAHQRFTYICQNSVAWLDEAAGDHRHSIRFQGTNWEELSFNQTTAA 1682
Query: 1051 TYSVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCF 1221
T V +DGC G KT+ E+ ++ LP+ DVA D G +Q+FG +L +CF
Sbjct: 1683 TIKVSHDGCRVRKGQ-AKTLFEF-SSSVGFLPLWDVAASDFGQTNQKFGFELGSICF 1737
>ref|NP_034056.1| collagen alpha-2(XI) chain [Mus musculus].
Length = 1650
Score = 149 bits (376), Expect = 7e-36
Identities = 90/236 (38%), Positives = 124/236 (52%), Gaps = 1/236 (0%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ +L SL ++IE +R P G++ +PARTC+DLK+CH + GEYW+DPNQGC DA +V
Sbjct: 1456 EIFGSLDSLREEIEQMRRPAGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRV 1515
Query: 700 FCNMETG-ETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
FCN G ETCV P D QF Y P V
Sbjct: 1516 FCNFTAGGETCVTPRD---------------------------DVTQFSYVDSEGSPVGV 1548
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+QLTFLRL+S A Q+++Y C Q G LK L+G+NE E+ E +
Sbjct: 1549 -VQLTFLRLLSVSAHQDVSYPCSGV-----SQDGPLK----LRGANEDELSPETSPYV-- 1596
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
DGC + G +TV+E +T +LP++D + D+GAP + G+ L PVCF+
Sbjct: 1597 KEFRDGCQTQQG---RTVLEVRTPVLEQLPVLDASFADLGAPTRRGGVLLGPVCFM 1649
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,760,959
Number of extensions: 1156199
Number of successful extensions: 6359
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 6125
Number of HSP's successfully gapped: 18
Length of query: 632
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 524
Effective length of database: 12,373,671
Effective search space: 6483803604
Effective search space used: 6483803604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012507
(1896 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000079.2| collagen alpha-1(I) chain preproprotein [Homo s... 523 e-148
Alignment gi|NP_001835.3| collagen alpha-1(II) chain isoform 1 precursor ... 383 e-106
Alignment gi|NP_149162.2| collagen alpha-1(II) chain isoform 2 precursor ... 383 e-106
Alignment gi|NP_000081.1| collagen alpha-1(III) chain preproprotein [Homo... 336 5e-92
Alignment gi|NP_000080.2| collagen alpha-2(I) chain precursor [Homo sapie... 335 1e-91
Alignment gi|NP_000384.2| collagen alpha-2(V) chain preproprotein [Homo s... 298 2e-80
Alignment gi|NP_001177638.1| collagen alpha-1(XI) chain isoform E preprop... 191 2e-48
Alignment gi|NP_542197.3| collagen alpha-1(XI) chain isoform C preproprot... 191 2e-48
Alignment gi|NP_542196.2| collagen alpha-1(XI) chain isoform B preproprot... 191 2e-48
Alignment gi|NP_001845.3| collagen alpha-1(XI) chain isoform A preproprot... 191 2e-48
>ref|NP_000079.2| collagen alpha-1(I) chain preproprotein [Homo sapiens].
Length = 1464
Score = 523 bits (1348), Expect = e-148
Identities = 249/269 (92%), Positives = 252/269 (93%)
Frame = +1
Query: 418 FDFSFLPQPPQEKAHDGGRYYXXXXXXXXXXXXLEVDTTLKSLSQQIENIRSPEGSRKNP 597
FDFSFLPQPPQEKAHDGGRYY LEVDTTLKSLSQQIENIRSPEGSRKNP
Sbjct: 1196 FDFSFLPQPPQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNP 1255
Query: 598 ARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVPQKNWYIS 777
ARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSV QKNWYIS
Sbjct: 1256 ARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKNWYIS 1315
Query: 778 KNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVA 957
KNPKDKRHVW+GESMTDGFQFEYGG+GSDPADVAIQLTFLRLMSTEASQNITYHCKNSVA
Sbjct: 1316 KNPKDKRHVWFGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVA 1375
Query: 958 YMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVIYDGCTSHTGAWGKTVIEYKTTKTS 1137
YMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSV DGCTSHTGAWGKTVIEYKTTKTS
Sbjct: 1376 YMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVTVDGCTSHTGAWGKTVIEYKTTKTS 1435
Query: 1138 RLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
RLPIIDVAPLDVGAPDQEFG D+ PVCFL
Sbjct: 1436 RLPIIDVAPLDVGAPDQEFGFDVGPVCFL 1464
Score = 69.7 bits (169), Expect = 9e-12
Identities = 36/61 (59%), Positives = 36/61 (59%)
Frame = +1
Query: 1 VGPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSGL 180
VGPAGKSGDRGET DKGETGEQGDRGIKGHRGFSGL
Sbjct: 1057 VGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGL 1116
Query: 181 Q 183
Q
Sbjct: 1117 Q 1117
>ref|NP_001835.3| collagen alpha-1(II) chain isoform 1 precursor [Homo sapiens].
Length = 1487
Score = 383 bits (983), Expect = e-106
Identities = 168/235 (71%), Positives = 204/235 (86%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
EVD TLKSL+ QIE+IRSPEGSRKNPARTCRDLK+CH +WKSG+YWIDPNQGC LDA+KV
Sbjct: 1254 EVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKV 1313
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNMETGETCVYP +VP+KNW+ SK+ K+K+H+W+GE++ GF F YG + P
Sbjct: 1314 FCNMETGETCVYPNPANVPKKNWWSSKS-KEKKHIWFGETINGGFHFSYGDDNLAPNTAN 1372
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+Q+TFLRL+STE SQNITYHCKNS+AY+D+ GNLKKALL+QGSN++EIRAEGNSRFTY+
Sbjct: 1373 VQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYT 1432
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+ DGCT HTG WGKTVIEY++ KTSRLPIID+AP+D+G P+QEFG+D+ PVCFL
Sbjct: 1433 ALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL 1487
Score = 55.5 bits (132), Expect = 2e-07
Identities = 27/60 (45%), Positives = 30/60 (50%)
Frame = +1
Query: 4 GPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSGLQ 183
GP GK GDRGE DKGE GE G+RG+KGHRGF+GLQ
Sbjct: 1080 GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQ 1139
>ref|NP_149162.2| collagen alpha-1(II) chain isoform 2 precursor [Homo sapiens].
Length = 1418
Score = 383 bits (983), Expect = e-106
Identities = 168/235 (71%), Positives = 204/235 (86%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
EVD TLKSL+ QIE+IRSPEGSRKNPARTCRDLK+CH +WKSG+YWIDPNQGC LDA+KV
Sbjct: 1185 EVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKV 1244
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNMETGETCVYP +VP+KNW+ SK+ K+K+H+W+GE++ GF F YG + P
Sbjct: 1245 FCNMETGETCVYPNPANVPKKNWWSSKS-KEKKHIWFGETINGGFHFSYGDDNLAPNTAN 1303
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+Q+TFLRL+STE SQNITYHCKNS+AY+D+ GNLKKALL+QGSN++EIRAEGNSRFTY+
Sbjct: 1304 VQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYT 1363
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+ DGCT HTG WGKTVIEY++ KTSRLPIID+AP+D+G P+QEFG+D+ PVCFL
Sbjct: 1364 ALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL 1418
Score = 55.5 bits (132), Expect = 2e-07
Identities = 27/60 (45%), Positives = 30/60 (50%)
Frame = +1
Query: 4 GPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSGLQ 183
GP GK GDRGE DKGE GE G+RG+KGHRGF+GLQ
Sbjct: 1011 GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQ 1070
>ref|NP_000081.1| collagen alpha-1(III) chain preproprotein [Homo sapiens].
Length = 1466
Score = 336 bits (861), Expect = 5e-92
Identities = 152/235 (64%), Positives = 187/235 (79%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ T+LKS++ QIE++ SP+GSRKNPAR CRDLK CH + KSGEYW+DPNQGC LDAIKV
Sbjct: 1233 EIMTSLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKV 1292
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
FCNMETGETC+ +VP+K+W+ + +K+HVW+GESM GFQF YG +
Sbjct: 1293 FCNMETGETCISANPLNVPRKHWWTDSSA-EKKHVWFGESMDGGFQFSYGNPELPEDVLD 1351
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
+QL FLRL+S+ ASQNITYHCKNS+AYMDQ +GN+KKAL L GSNE E +AEGNS+FTY+
Sbjct: 1352 VQLAFLRLLSSRASQNITYHCKNSIAYMDQASGNVKKALKLMGSNEGEFKAEGNSKFTYT 1411
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
V+ DGCT HTG W KTV EY+T K RLPI+D+AP D+G PDQEFG+D+ PVCFL
Sbjct: 1412 VLEDGCTKHTGEWSKTVFEYRTRKAVRLPIVDIAPYDIGGPDQEFGVDVGPVCFL 1466
Score = 55.8 bits (133), Expect = 1e-07
Identities = 29/59 (49%), Positives = 31/59 (52%)
Frame = +1
Query: 1 VGPAGKSGDRGETXXXXXXXXXXXXXXXXXXXXXXXXXDKGETGEQGDRGIKGHRGFSG 177
VGPAGKSGDRGE+ DKGETGE+G GIKGHRGF G
Sbjct: 1055 VGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPG 1113
>ref|NP_000080.2| collagen alpha-2(I) chain precursor [Homo sapiens].
Length = 1366
Score = 335 bits (858), Expect = 1e-91
Identities = 148/234 (63%), Positives = 187/234 (79%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
EVD TLKSL+ QIE + +PEGSRKNPARTCRDL++ H +W SG YWIDPNQGC +DAIKV
Sbjct: 1134 EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKV 1193
Query: 700 FCNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVA 879
+C+ TGETC+ ++P KNWY ++ KDK+HVW GE++ G QFEY EG ++A
Sbjct: 1194 YCDFSTGETCIRAQPENIPAKNWY--RSSKDKKHVWLGETINAGSQFEYNVEGVTSKEMA 1251
Query: 880 IQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYS 1059
QL F+RL++ ASQNITYHCKNS+AYMD++TGNLKKA++LQGSN++E+ AEGNSRFTY+
Sbjct: 1252 TQLAFMRLLANYASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYT 1311
Query: 1060 VIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCF 1221
V+ DGC+ T WGKT+IEYKT K SRLP +D+APLD+G DQEF +D+ PVCF
Sbjct: 1312 VLVDGCSKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFFVDIGPVCF 1365
>ref|NP_000384.2| collagen alpha-2(V) chain preproprotein [Homo sapiens].
Length = 1499
Score = 298 bits (762), Expect = 2e-80
Identities = 144/234 (61%), Positives = 176/234 (75%)
Frame = +1
Query: 523 VDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVF 702
V TLKSLS QIE +RSP+GS+K+PARTC DLK+CHS +SGEYWIDPNQG DAIKV+
Sbjct: 1268 VHATLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHSAKQSGEYWIDPNQGSVEDAIKVY 1327
Query: 703 CNMETGETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADVAI 882
CNMETGETC+ SVP+K W+ SK+P D + VWYG M G QF YG S P
Sbjct: 1328 CNMETGETCISANPSSVPRKTWWASKSP-DNKPVWYGLDMNRGSQFAYGDHQS-PNTAIT 1385
Query: 883 QLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSV 1062
Q+TFLRL+S EASQNITY CKNSV YMD Q NLKKA++L+G+N+++I+AEGN RF Y V
Sbjct: 1386 QMTFLRLLSKEASQNITYICKNSVGYMDDQAKNLKKAVVLKGANDLDIKAEGNIRFRYIV 1445
Query: 1063 IYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+ D C+ G GKTV EY+T +RLPIID+AP+DVG DQEFG+++ PVCF+
Sbjct: 1446 LQDTCSKRNGNVGKTVFEYRTQNVARLPIIDLAPVDVGGTDQEFGVEIGPVCFV 1499
>ref|NP_001177638.1| collagen alpha-1(XI) chain isoform E preproprotein [Homo sapiens].
Length = 1767
Score = 191 bits (485), Expect = 2e-48
Identities = 102/236 (43%), Positives = 144/236 (61%), Gaps = 1/236 (0%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ +L SL Q IE+++ P G++ NPARTC+DL++ H D+ GEYWIDPNQGC+ D+ KV
Sbjct: 1539 EIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKV 1598
Query: 700 FCNMET-GETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
+CN + GETC+YP + S + IS PK+K W+ E EG+ +
Sbjct: 1599 YCNFTSGGETCIYPDKKS---EGVRISSWPKEKPGSWFSEFKRGKLLSYLDVEGN--SIN 1653
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+Q+TFL+L++ A QN TYHC S A+ D +G+ KAL GSN+ E+ + N
Sbjct: 1654 MVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNP--FI 1711
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+YDGC S G + KTVIE T K ++PI+DV D G +Q+FG ++ PVCFL
Sbjct: 1712 KTLYDGCASRKG-YEKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFL 1766
>ref|NP_542197.3| collagen alpha-1(XI) chain isoform C preproprotein [Homo sapiens].
Length = 1690
Score = 191 bits (485), Expect = 2e-48
Identities = 102/236 (43%), Positives = 144/236 (61%), Gaps = 1/236 (0%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ +L SL Q IE+++ P G++ NPARTC+DL++ H D+ GEYWIDPNQGC+ D+ KV
Sbjct: 1462 EIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKV 1521
Query: 700 FCNMET-GETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
+CN + GETC+YP + S + IS PK+K W+ E EG+ +
Sbjct: 1522 YCNFTSGGETCIYPDKKS---EGVRISSWPKEKPGSWFSEFKRGKLLSYLDVEGN--SIN 1576
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+Q+TFL+L++ A QN TYHC S A+ D +G+ KAL GSN+ E+ + N
Sbjct: 1577 MVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNP--FI 1634
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+YDGC S G + KTVIE T K ++PI+DV D G +Q+FG ++ PVCFL
Sbjct: 1635 KTLYDGCASRKG-YEKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFL 1689
>ref|NP_542196.2| collagen alpha-1(XI) chain isoform B preproprotein [Homo sapiens].
Length = 1818
Score = 191 bits (485), Expect = 2e-48
Identities = 102/236 (43%), Positives = 144/236 (61%), Gaps = 1/236 (0%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ +L SL Q IE+++ P G++ NPARTC+DL++ H D+ GEYWIDPNQGC+ D+ KV
Sbjct: 1590 EIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKV 1649
Query: 700 FCNMET-GETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
+CN + GETC+YP + S + IS PK+K W+ E EG+ +
Sbjct: 1650 YCNFTSGGETCIYPDKKS---EGVRISSWPKEKPGSWFSEFKRGKLLSYLDVEGN--SIN 1704
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+Q+TFL+L++ A QN TYHC S A+ D +G+ KAL GSN+ E+ + N
Sbjct: 1705 MVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNP--FI 1762
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+YDGC S G + KTVIE T K ++PI+DV D G +Q+FG ++ PVCFL
Sbjct: 1763 KTLYDGCASRKG-YEKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFL 1817
>ref|NP_001845.3| collagen alpha-1(XI) chain isoform A preproprotein [Homo sapiens].
Length = 1806
Score = 191 bits (485), Expect = 2e-48
Identities = 102/236 (43%), Positives = 144/236 (61%), Gaps = 1/236 (0%)
Frame = +1
Query: 520 EVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKV 699
E+ +L SL Q IE+++ P G++ NPARTC+DL++ H D+ GEYWIDPNQGC+ D+ KV
Sbjct: 1578 EIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKV 1637
Query: 700 FCNMET-GETCVYPTQPSVPQKNWYISKNPKDKRHVWYGESMTDGFQFEYGGEGSDPADV 876
+CN + GETC+YP + S + IS PK+K W+ E EG+ +
Sbjct: 1638 YCNFTSGGETCIYPDKKS---EGVRISSWPKEKPGSWFSEFKRGKLLSYLDVEGN--SIN 1692
Query: 877 AIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTY 1056
+Q+TFL+L++ A QN TYHC S A+ D +G+ KAL GSN+ E+ + N
Sbjct: 1693 MVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNP--FI 1750
Query: 1057 SVIYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGIDLSPVCFL 1224
+YDGC S G + KTVIE T K ++PI+DV D G +Q+FG ++ PVCFL
Sbjct: 1751 KTLYDGCASRKG-YEKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFL 1805
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,619,931
Number of extensions: 1390683
Number of successful extensions: 7753
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 7501
Number of HSP's successfully gapped: 23
Length of query: 632
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 523
Effective length of database: 14,704,088
Effective search space: 7690238024
Effective search space used: 7690238024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012507
(1896 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 474 e-131
gb|GL896296.2| Sus scrofa unplaced genomic scaffold ChrUScaf4180 381 e-102
gb|GL893359.2| Sus scrofa unplaced genomic scaffold ChrUScaf1244 168 7e-39
gb|JH118748.1| Sus scrofa unplaced genomic scaffold ChrUScaf2229 60 5e-06
Sscrofa_Chr09 60 5e-06
>Sscrofa_Chr12
|| Length = 63588571
Score = 474 bits (239), Expect = e-131
Identities = 239/239 (100%)
Strand = Plus / Minus
Query: 409 agcggcggtttcgacttcagcttcttgccccagccacctcaagagaaggctcacgatggt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26470509 agcggcggtttcgacttcagcttcttgccccagccacctcaagagaaggctcacgatggt 26470450
Query: 469 ggccgctactaccgggccgatgatgccaatgtggtccgcgaccgtgacctcgaggtggac 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26470449 ggccgctactaccgggccgatgatgccaatgtggtccgcgaccgtgacctcgaggtggac 26470390
Query: 529 accaccctcaagagcctgagccagcagatcgagaacatccggagccccgaaggcagccgc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26470389 accaccctcaagagcctgagccagcagatcgagaacatccggagccccgaaggcagccgc 26470330
Query: 589 aagaaccccgcccgcacctgccgcgacctcaagatgtgccactccgactggaagagcgg 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26470329 aagaaccccgcccgcacctgccgcgacctcaagatgtgccactccgactggaagagcgg 26470271
Score = 468 bits (236), Expect = e-129
Identities = 245/248 (98%)
Strand = Plus / Minus
Query: 834 ccagttcgagtacggcggcgagggctccgatcctgctgacgtggccatccagctgacctt 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26469692 ccagttcgagtacggcggcgagggctccgatcctgctgacgtggccatccagctgacctt 26469633
Query: 894 cctgcgcctgatgtccactgaggcttcccagaacatcacctaccactgcaagaacagcgt 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26469632 cctgcgcctgatgtccactgaggcttcccagaacatcacctaccactgcaagaacagcgt 26469573
Query: 954 ggcctacatggaccagcagactggcaacctcaagaaggccctgctcctccagggctccaa 1013
||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 26469572 ggcctacatggtccagcagactggcaacctcaagaagaccctgctccttcagggctccaa 26469513
Query: 1014 cgagatcgagatccgggccgagggcaacagccgcttcacctacagcgtgatctacgacgg 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26469512 cgagatcgagatccgggccgagggcaacagccgcttcacctacagcgtgatctacgacgg 26469453
Query: 1074 ctgcacga 1081
||||||||
Sbjct: 26469452 ctgcacga 26469445
Score = 381 bits (192), Expect = e-102
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 646 ggagaatactggattgaccccaaccaaggctgcaacctggacgccatcaaagtcttctgc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26470160 ggagaatactggattgaccccaaccaaggctgcaacctggacgccatcaaagtcttctgc 26470101
Query: 706 aacatggagacaggcgagacctgcgtgtaccccactcagcccagcgtgccccagaagaac 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26470100 aacatggagacaggcgagacctgcgtgtaccccactcagcccagcgtgccccagaagaac 26470041
Query: 766 tggtacatcagcaagaaccccaaggacaagaggcacgtctggtacggcgagagcatgacc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26470040 tggtacatcagcaagaaccccaaggacaagaggcacgtctggtacggcgagagcatgacc 26469981
Query: 826 gacggattccag 837
||||||||||||
Sbjct: 26469980 gacggattccag 26469969
Score = 216 bits (109), Expect = 3e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 94 ggaccccaaggcccccgtggtgacaagggtgagacaggcgaacagggcgacagaggcatt 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26471594 ggaccccaaggcccccgtggtgacaagggtgagacaggcgaacagggcgacagaggcatt 26471535
Query: 154 aagggtcaccgtggcttctctggtctccagggtccccctggccctcccg 202
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26471534 aagggtcaccgtggcttctctggtctccagggtccccctggccctcccg 26471486
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 256 ggtccccctggctctgctggtgctcctggcaaagatggactcaacggtctccccggcccc 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26470757 ggtccccctggctctgctggtgctcctggcaaagatggactcaacggtctccccggcccc 26470698
Query: 316 atcggtccccctgggcctcgtggtcgcactggtgatgctgg 356
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 26470697 atcggtccccctgggcctcgtggtcgcactggtgatgctgg 26470657
Score = 109 bits (55), Expect = 6e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 202 ggctctcctggtgagcaaggtccctccggagcttctggtcccgctggtccccgag 256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26471151 ggctctcctggtgagcaaggtccctccggagcttctggtcccgctggtccccgag 26471097
Score = 109 bits (55), Expect = 6e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 40 ggtcctgctggtcctgctggtcccgttggccccgttggtgcccgtggccctgctg 94
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26471763 ggtcctgctggtcctgctggtcccgttggccccgttggtgcccgtggccctgctg 26471709
Score = 79.8 bits (40), Expect = 5e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 1 gttggccctgctggcaagagcggcgatcgtggtgagactg 40
||||||||||||||||||||||||||||||||||||||||
Sbjct: 26472376 gttggccctgctggcaagagcggcgatcgtggtgagactg 26472337
>gb|GL896296.2| Sus scrofa unplaced genomic scaffold ChrUScaf4180
Length = 31381
Score = 381 bits (192), Expect = e-102
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 646 ggagaatactggattgaccccaaccaaggctgcaacctggacgccatcaaagtcttctgc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5176 ggagaatactggattgaccccaaccaaggctgcaacctggacgccatcaaagtcttctgc 5117
Query: 706 aacatggagacaggcgagacctgcgtgtaccccactcagcccagcgtgccccagaagaac 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5116 aacatggagacaggcgagacctgcgtgtaccccactcagcccagcgtgccccagaagaac 5057
Query: 766 tggtacatcagcaagaaccccaaggacaagaggcacgtctggtacggcgagagcatgacc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5056 tggtacatcagcaagaaccccaaggacaagaggcacgtctggtacggcgagagcatgacc 4997
Query: 826 gacggattccag 837
||||||||||||
Sbjct: 4996 gacggattccag 4985
Score = 369 bits (186), Expect = 4e-99
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 895 ctgcgcctgatgtccactgaggcttcccagaacatcacctaccactgcaagaacagcgtg 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4544 ctgcgcctgatgtccactgaggcttcccagaacatcacctaccactgcaagaacagcgtg 4485
Query: 955 gcctacatggaccagcagactggcaacctcaagaaggccctgctcctccagggctccaac 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4484 gcctacatggaccagcagactggcaacctcaagaaggccctgctcctccagggctccaac 4425
Query: 1015 gagatcgagatccgggccgagggcaacagccgcttcacctacagcgtgatctacgacggc 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4424 gagatcgagatccgggccgagggcaacagccgcttcacctacagcgtgatctacgacggc 4365
Query: 1075 tgcacg 1080
||||||
Sbjct: 4364 tgcacg 4359
Score = 339 bits (171), Expect = 3e-90
Identities = 171/171 (100%)
Strand = Plus / Minus
Query: 477 ctaccgggccgatgatgccaatgtggtccgcgaccgtgacctcgaggtggacaccaccct 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5457 ctaccgggccgatgatgccaatgtggtccgcgaccgtgacctcgaggtggacaccaccct 5398
Query: 537 caagagcctgagccagcagatcgagaacatccggagccccgaaggcagccgcaagaaccc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5397 caagagcctgagccagcagatcgagaacatccggagccccgaaggcagccgcaagaaccc 5338
Query: 597 cgcccgcacctgccgcgacctcaagatgtgccactccgactggaagagcgg 647
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5337 cgcccgcacctgccgcgacctcaagatgtgccactccgactggaagagcgg 5287
Score = 289 bits (146), Expect = 3e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 1109 tgatcgaatacaaaaccaccaagacctcccgcctgcccatcatcgatgtggcccccttgg 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4152 tgatcgaatacaaaaccaccaagacctcccgcctgcccatcatcgatgtggcccccttgg 4093
Query: 1169 acgttggcgcccccgaccaagaattcggcatcgaccttagccctgtctgcttcctgtaaa 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4092 acgttggcgcccccgaccaagaattcggcatcgaccttagccctgtctgcttcctgtaaa 4033
Query: 1229 ctccctccgccccaatctggctccct 1254
||||||||||||||||||||||||||
Sbjct: 4032 ctccctccgccccaatctggctccct 4007
Score = 216 bits (109), Expect = 3e-53
Identities = 123/130 (94%)
Strand = Plus / Minus
Query: 1318 aaaagccaaaaaatggcagacaatttcacatggactttggaaaatannnnnnncctttgc 1377
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3943 aaaagccaaaaaatggcagacaatttcacatggactttggaaaatatttttttcctttgc 3884
Query: 1378 attcatctctcaaacttagtttttaaatctttgaccaactgaacatgaccaaaaaccaaa 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3883 attcatctctcaaacttagtttttaaatctttgaccaactgaacatgaccaaaaaccaaa 3824
Query: 1438 agtgcatttc 1447
||||||||||
Sbjct: 3823 agtgcatttc 3814
Score = 216 bits (109), Expect = 3e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 94 ggaccccaaggcccccgtggtgacaagggtgagacaggcgaacagggcgacagaggcatt 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6668 ggaccccaaggcccccgtggtgacaagggtgagacaggcgaacagggcgacagaggcatt 6609
Query: 154 aagggtcaccgtggcttctctggtctccagggtccccctggccctcccg 202
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6608 aagggtcaccgtggcttctctggtctccagggtccccctggccctcccg 6560
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 256 ggtccccctggctctgctggtgctcctggcaaagatggactcaacggtctccccggcccc 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5756 ggtccccctggctctgctggtgctcctggcaaagatggactcaacggtctccccggcccc 5697
Query: 316 atcggtccccctgggcctcgtggtcgcactggtgatgctgg 356
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 5696 atcggtccccctgggcctcgtggtcgcactggtgatgctgg 5656
Score = 109 bits (55), Expect = 6e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 202 ggctctcctggtgagcaaggtccctccggagcttctggtcccgctggtccccgag 256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6150 ggctctcctggtgagcaaggtccctccggagcttctggtcccgctggtccccgag 6096
Score = 109 bits (55), Expect = 6e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 40 ggtcctgctggtcctgctggtcccgttggccccgttggtgcccgtggccctgctg 94
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6837 ggtcctgctggtcctgctggtcccgttggccccgttggtgcccgtggccctgctg 6783
Score = 71.9 bits (36), Expect = 1e-09
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 1 gttggccctgctggcaagagcggcgatcgtggtgag 36
||||||||||||||||||||||||||||||||||||
Sbjct: 7440 gttggccctgctggcaagagcggcgatcgtggtgag 7405
>gb|GL893359.2| Sus scrofa unplaced genomic scaffold ChrUScaf1244
Length = 54070
Score = 168 bits (85), Expect = 7e-39
Identities = 147/165 (89%), Gaps = 2/165 (1%)
Strand = Plus / Minus
Query: 881 tccagctgaccttcctgcgcctgatgtccactgaggcttcccagaacatcacctaccact 940
||||| ||||||||||||||||| ||||||| |||| ||||||||||||||||||||||
Sbjct: 4251 tccagatgaccttcctgcgcctgctgtccaccgagggctcccagaacatcacctaccact 4192
Query: 941 gcaagaacagcgtggcctacatggac-cagcagactggcaacctcaagaaggccctgctc 999
||||||||||| | |||||| ||||| ||| | |||||||||||||||| |||||||||
Sbjct: 4191 gcaagaacagcattgcctacctggacgaagctg-ctggcaacctcaagaaagccctgctc 4133
Query: 1000 ctccagggctccaacgagatcgagatccgggccgagggcaacagc 1044
|||||||||||||||| | ||||||||||| ||||||||||||
Sbjct: 4132 atccagggctccaacgacgtggagatccgggctgagggcaacagc 4088
>gb|JH118748.1| Sus scrofa unplaced genomic scaffold ChrUScaf2229
Length = 288688
Score = 60.0 bits (30), Expect = 5e-06
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 919 tcccagaacatcacctaccactgcaagaacagcgtggcctacatggaccagcagactggc 978
||||| |||||||||||||| |||||||||||| | || |||||||| | ||||||||
Sbjct: 30104 tcccaaaacatcacctaccattgcaagaacagcattgcatacatggatgaagagactggc 30045
Query: 979 aacctcaagaaggc 992
||||| || |||||
Sbjct: 30044 aacctgaaaaaggc 30031
>Sscrofa_Chr09
|| Length = 153670197
Score = 60.0 bits (30), Expect = 5e-06
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 919 tcccagaacatcacctaccactgcaagaacagcgtggcctacatggaccagcagactggc 978
||||| |||||||||||||| |||||||||||| | || |||||||| | ||||||||
Sbjct: 81391191 tcccaaaacatcacctaccattgcaagaacagcattgcatacatggatgaagagactggc 81391250
Query: 979 aacctcaagaaggc 992
||||| || |||||
Sbjct: 81391251 aacctgaaaaaggc 81391264
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,720,784
Number of extensions: 268
Number of successful extensions: 268
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 22
Length of query: 1896
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1874
Effective length of database: 2,808,408,574
Effective search space: 5262957667676
Effective search space used: 5262957667676
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)