Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012516
(1134 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536408.2| PREDICTED: similar to Growth hormone inducible ... 496 e-149
Alignment gi|XP_851947.1| PREDICTED: similar to Growth hormone inducible ... 496 e-149
Alignment gi|XP_864687.1| PREDICTED: similar to Growth hormone inducible ... 268 7e-72
>ref|XP_536408.2| PREDICTED: similar to Growth hormone inducible transmembrane protein
(Dermal papilla derived protein 2) isoform 1 [Canis
familiaris].
Length = 345
Score = 496 bits (1277), Expect(3) = e-149
Identities = 248/287 (86%), Positives = 260/287 (90%)
Frame = +2
Query: 167 MLAARLVCLRTLPSRVFHPTFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTGQ 346
MLAARLVCLRTLPSRVF P FTK SPVVK SITKNQWL TPSR+YATKTR+GIRRGK GQ
Sbjct: 1 MLAARLVCLRTLPSRVFQPAFTKTSPVVKKSITKNQWLFTPSRDYATKTRVGIRRGKIGQ 60
Query: 347 ELKEAALEPSVEKIFKIDQMGRWFIXXXXXXXXXXXXXXXXXMSNEIGAIEKAIIWPQYV 526
ELKE A+EPS+EKIFKIDQMGRWFI MSNEIGAIEKA+IWPQYV
Sbjct: 61 ELKERAMEPSMEKIFKIDQMGRWFIAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQYV 120
Query: 527 KDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAGMLVQSI 706
KDRIHSTYMYLAGSIGLTA+SALAVSRTP L+NFMM+GSWVTIGATFAAMIGAG+LVQSI
Sbjct: 121 KDRIHSTYMYLAGSIGLTALSALAVSRTPVLLNFMMRGSWVTIGATFAAMIGAGILVQSI 180
Query: 707 SYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK 886
SYD+SPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK
Sbjct: 181 SYDQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK 240
Query: 887 FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAIYGGISSF 1027
FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVA+YGG+ F
Sbjct: 241 FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAVYGGLVLF 287
Score = 45.4 bits (106), Expect(3) = e-149
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +3
Query: 1020 VLFSMFLLYDTQKVIKRAEVVP 1085
VLFSMFLLYDTQKVIKRAEV+P
Sbjct: 285 VLFSMFLLYDTQKVIKRAEVIP 306
Score = 27.3 bits (59), Expect(3) = e-149
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 1084 PM*GVPKYDPLNSMLGI 1134
P GV KYDP+NSML I
Sbjct: 306 PAYGVQKYDPINSMLRI 322
>ref|XP_851947.1| PREDICTED: similar to Growth hormone inducible transmembrane protein
(Dermal papilla derived protein 2) isoform 3 [Canis
familiaris].
Length = 345
Score = 496 bits (1277), Expect(3) = e-149
Identities = 248/287 (86%), Positives = 260/287 (90%)
Frame = +2
Query: 167 MLAARLVCLRTLPSRVFHPTFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTGQ 346
MLAARLVCLRTLPSRVF P FTK SPVVK SITKNQWL TPSR+YATKTR+GIRRGK GQ
Sbjct: 1 MLAARLVCLRTLPSRVFQPAFTKTSPVVKKSITKNQWLFTPSRDYATKTRVGIRRGKIGQ 60
Query: 347 ELKEAALEPSVEKIFKIDQMGRWFIXXXXXXXXXXXXXXXXXMSNEIGAIEKAIIWPQYV 526
ELKE A+EPS+EKIFKIDQMGRWFI MSNEIGAIEKA+IWPQYV
Sbjct: 61 ELKERAMEPSMEKIFKIDQMGRWFIAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQYV 120
Query: 527 KDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAGMLVQSI 706
KDRIHSTYMYLAGSIGLTA+SALAVSRTP L+NFMM+GSWVTIGATFAAMIGAG+LVQSI
Sbjct: 121 KDRIHSTYMYLAGSIGLTALSALAVSRTPVLLNFMMRGSWVTIGATFAAMIGAGILVQSI 180
Query: 707 SYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK 886
SYD+SPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK
Sbjct: 181 SYDQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK 240
Query: 887 FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAIYGGISSF 1027
FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVA+YGG+ F
Sbjct: 241 FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAVYGGLVLF 287
Score = 45.4 bits (106), Expect(3) = e-149
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +3
Query: 1020 VLFSMFLLYDTQKVIKRAEVVP 1085
VLFSMFLLYDTQKVIKRAEV+P
Sbjct: 285 VLFSMFLLYDTQKVIKRAEVIP 306
Score = 27.3 bits (59), Expect(3) = e-149
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 1084 PM*GVPKYDPLNSMLGI 1134
P GV KYDP+NSML I
Sbjct: 306 PAYGVQKYDPINSMLRI 322
>ref|XP_864687.1| PREDICTED: similar to Growth hormone inducible transmembrane
protein (Dermal papilla derived protein 2) isoform 4
[Canis familiaris].
Length = 167
Score = 268 bits (685), Expect = 7e-72
Identities = 132/167 (79%), Positives = 141/167 (84%)
Frame = +2
Query: 167 MLAARLVCLRTLPSRVFHPTFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTGQ 346
MLAARLVCLRTLPSRVF P FTK SPVVK SITKNQWL TPSR+YATKTR+GIRRGK GQ
Sbjct: 1 MLAARLVCLRTLPSRVFQPAFTKTSPVVKKSITKNQWLFTPSRDYATKTRVGIRRGKIGQ 60
Query: 347 ELKEAALEPSVEKIFKIDQMGRWFIXXXXXXXXXXXXXXXXXMSNEIGAIEKAIIWPQYV 526
ELKE A+EPS+EKIFKIDQMGRWFI MSNEIGAIEKA+IWPQYV
Sbjct: 61 ELKERAMEPSMEKIFKIDQMGRWFIAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQYV 120
Query: 527 KDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATF 667
KDRIHSTYMYLAGSIGLTA+SALAVSRTP L+NFMM+GSWVT+G TF
Sbjct: 121 KDRIHSTYMYLAGSIGLTALSALAVSRTPVLLNFMMRGSWVTVGITF 167
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,937,909
Number of extensions: 1345961
Number of successful extensions: 4481
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4466
Number of HSP's successfully gapped: 7
Length of query: 378
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 274
Effective length of database: 15,407,560
Effective search space: 4221671440
Effective search space used: 4221671440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012516
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012516
(1134 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029224.1| growth hormone inducible transmembrane prote... 506 e-153
Alignment gi|XP_001787153.1| PREDICTED: growth hormone inducible transmem... 506 e-153
>ref|NP_001029224.1| growth hormone inducible transmembrane protein [Bos taurus].
Length = 345
Score = 506 bits (1304), Expect(3) = e-153
Identities = 254/287 (88%), Positives = 265/287 (92%)
Frame = +2
Query: 167 MLAARLVCLRTLPSRVFHPTFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTGQ 346
MLAARLVCLR LPSRVFHP FTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKT Q
Sbjct: 1 MLAARLVCLRALPSRVFHPAFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTTQ 60
Query: 347 ELKEAALEPSVEKIFKIDQMGRWFIXXXXXXXXXXXXXXXXXMSNEIGAIEKAIIWPQYV 526
ELKEAALEPSVEKIFKIDQMGRWFI MSNEIGAIEKA+IWPQYV
Sbjct: 61 ELKEAALEPSVEKIFKIDQMGRWFIAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQYV 120
Query: 527 KDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAGMLVQSI 706
KDRIHSTYMYLAGSIGLTA+SA+AVSRTPALMNFMM+GSW+TIGATFAAMIGAGMLVQSI
Sbjct: 121 KDRIHSTYMYLAGSIGLTALSAVAVSRTPALMNFMMRGSWITIGATFAAMIGAGMLVQSI 180
Query: 707 SYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK 886
SY++SPGPKHLAWLLHSGVMGAVVAPLTILGGPLL+RAAWYTAGIVGGLSTVAMCAPSEK
Sbjct: 181 SYEQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLLRAAWYTAGIVGGLSTVAMCAPSEK 240
Query: 887 FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAIYGGISSF 1027
FLNMGAPLGVGLG+VFVSSLGSMFLPPTTVAGATLYSVA+YGG+ F
Sbjct: 241 FLNMGAPLGVGLGVVFVSSLGSMFLPPTTVAGATLYSVAVYGGLVLF 287
Score = 45.8 bits (107), Expect(3) = e-153
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +3
Query: 1020 VLFSMFLLYDTQKVIKRAEVVP 1085
VLFSMFLLYDTQKVIKRAEVVP
Sbjct: 285 VLFSMFLLYDTQKVIKRAEVVP 306
Score = 32.7 bits (73), Expect(3) = e-153
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 1084 PM*GVPKYDPLNSMLGI 1134
PM GV KYDP+NSMLGI
Sbjct: 306 PMYGVQKYDPINSMLGI 322
>ref|XP_001787153.1| PREDICTED: growth hormone inducible transmembrane protein-like [Bos
taurus].
Length = 345
Score = 506 bits (1304), Expect(3) = e-153
Identities = 254/287 (88%), Positives = 265/287 (92%)
Frame = +2
Query: 167 MLAARLVCLRTLPSRVFHPTFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTGQ 346
MLAARLVCLR LPSRVFHP FTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKT Q
Sbjct: 1 MLAARLVCLRALPSRVFHPAFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTTQ 60
Query: 347 ELKEAALEPSVEKIFKIDQMGRWFIXXXXXXXXXXXXXXXXXMSNEIGAIEKAIIWPQYV 526
ELKEAALEPSVEKIFKIDQMGRWFI MSNEIGAIEKA+IWPQYV
Sbjct: 61 ELKEAALEPSVEKIFKIDQMGRWFIAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQYV 120
Query: 527 KDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAGMLVQSI 706
KDRIHSTYMYLAGSIGLTA+SA+AVSRTPALMNFMM+GSW+TIGATFAAMIGAGMLVQSI
Sbjct: 121 KDRIHSTYMYLAGSIGLTALSAVAVSRTPALMNFMMRGSWITIGATFAAMIGAGMLVQSI 180
Query: 707 SYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK 886
SY++SPGPKHLAWLLHSGVMGAVVAPLTILGGPLL+RAAWYTAGIVGGLSTVAMCAPSEK
Sbjct: 181 SYEQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLLRAAWYTAGIVGGLSTVAMCAPSEK 240
Query: 887 FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAIYGGISSF 1027
FLNMGAPLGVGLG+VFVSSLGSMFLPPTTVAGATLYSVA+YGG+ F
Sbjct: 241 FLNMGAPLGVGLGVVFVSSLGSMFLPPTTVAGATLYSVAVYGGLVLF 287
Score = 45.8 bits (107), Expect(3) = e-153
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +3
Query: 1020 VLFSMFLLYDTQKVIKRAEVVP 1085
VLFSMFLLYDTQKVIKRAEVVP
Sbjct: 285 VLFSMFLLYDTQKVIKRAEVVP 306
Score = 32.7 bits (73), Expect(3) = e-153
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 1084 PM*GVPKYDPLNSMLGI 1134
PM GV KYDP+NSMLGI
Sbjct: 306 PMYGVQKYDPINSMLGI 322
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,029,686
Number of extensions: 1312259
Number of successful extensions: 4240
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4235
Number of HSP's successfully gapped: 6
Length of query: 378
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,240,222
Effective search space: 3901820828
Effective search space used: 3901820828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012516
(1134 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927441.1| PREDICTED: growth hormone-inducible transmem... 523 e-159
Alignment gi|XP_001927428.1| PREDICTED: growth hormone-inducible transmem... 523 e-159
>ref|XP_001927441.1| PREDICTED: growth hormone-inducible transmembrane protein isoform 2
[Sus scrofa].
Length = 345
Score = 523 bits (1347), Expect(3) = e-159
Identities = 267/287 (93%), Positives = 268/287 (93%)
Frame = +2
Query: 167 MLAARLVCLRTLPSRVFHPTFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTGQ 346
MLAARLVCLRTLPSRVFHPTFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTGQ
Sbjct: 1 MLAARLVCLRTLPSRVFHPTFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTGQ 60
Query: 347 ELKEAALEPSVEKIFKIDQMGRWFIXXXXXXXXXXXXXXXXXMSNEIGAIEKAIIWPQYV 526
ELKEAALEPSVEKIFKIDQMGRWFI MSNEIGAIEKAIIWPQYV
Sbjct: 61 ELKEAALEPSVEKIFKIDQMGRWFIAGGAAVGLGALCYYGLGMSNEIGAIEKAIIWPQYV 120
Query: 527 KDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAGMLVQSI 706
KDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAGMLVQSI
Sbjct: 121 KDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAGMLVQSI 180
Query: 707 SYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK 886
SYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK
Sbjct: 181 SYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK 240
Query: 887 FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAIYGGISSF 1027
FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAIYGG+ F
Sbjct: 241 FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAIYGGLVLF 287
Score = 45.8 bits (107), Expect(3) = e-159
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +3
Query: 1020 VLFSMFLLYDTQKVIKRAEVVP 1085
VLFSMFLLYDTQKVIKRAEVVP
Sbjct: 285 VLFSMFLLYDTQKVIKRAEVVP 306
Score = 32.7 bits (73), Expect(3) = e-159
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 1084 PM*GVPKYDPLNSMLGI 1134
PM GV KYDP+NSMLGI
Sbjct: 306 PMYGVQKYDPINSMLGI 322
>ref|XP_001927428.1| PREDICTED: growth hormone-inducible transmembrane protein isoform 1
[Sus scrofa].
Length = 345
Score = 523 bits (1347), Expect(3) = e-159
Identities = 267/287 (93%), Positives = 268/287 (93%)
Frame = +2
Query: 167 MLAARLVCLRTLPSRVFHPTFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTGQ 346
MLAARLVCLRTLPSRVFHPTFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTGQ
Sbjct: 1 MLAARLVCLRTLPSRVFHPTFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTGQ 60
Query: 347 ELKEAALEPSVEKIFKIDQMGRWFIXXXXXXXXXXXXXXXXXMSNEIGAIEKAIIWPQYV 526
ELKEAALEPSVEKIFKIDQMGRWFI MSNEIGAIEKAIIWPQYV
Sbjct: 61 ELKEAALEPSVEKIFKIDQMGRWFIAGGAAVGLGALCYYGLGMSNEIGAIEKAIIWPQYV 120
Query: 527 KDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAGMLVQSI 706
KDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAGMLVQSI
Sbjct: 121 KDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAGMLVQSI 180
Query: 707 SYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK 886
SYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK
Sbjct: 181 SYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK 240
Query: 887 FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAIYGGISSF 1027
FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAIYGG+ F
Sbjct: 241 FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAIYGGLVLF 287
Score = 45.8 bits (107), Expect(3) = e-159
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +3
Query: 1020 VLFSMFLLYDTQKVIKRAEVVP 1085
VLFSMFLLYDTQKVIKRAEVVP
Sbjct: 285 VLFSMFLLYDTQKVIKRAEVVP 306
Score = 32.7 bits (73), Expect(3) = e-159
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 1084 PM*GVPKYDPLNSMLGI 1134
PM GV KYDP+NSMLGI
Sbjct: 306 PMYGVQKYDPINSMLGI 322
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,007,321
Number of extensions: 839485
Number of successful extensions: 2889
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2883
Number of HSP's successfully gapped: 6
Length of query: 378
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 277
Effective length of database: 8,829,335
Effective search space: 2445725795
Effective search space used: 2445725795
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012516
(1134 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186051.1| growth hormone-inducible transmembrane prote... 489 e-146
Alignment gi|NP_510963.1| growth hormone-inducible transmembrane protein ... 489 e-146
>ref|NP_001186051.1| growth hormone-inducible transmembrane protein [Mus musculus].
Length = 346
Score = 489 bits (1258), Expect(3) = e-146
Identities = 247/288 (85%), Positives = 261/288 (90%), Gaps = 1/288 (0%)
Frame = +2
Query: 167 MLAARLVCLRTLPSRVFHPTF-TKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTG 343
MLAARLVCLRTLPSRVF PTF TKASP+VKNSITKNQWL+TPSREYATKTRI RGKTG
Sbjct: 1 MLAARLVCLRTLPSRVFQPTFITKASPLVKNSITKNQWLVTPSREYATKTRIRTHRGKTG 60
Query: 344 QELKEAALEPSVEKIFKIDQMGRWFIXXXXXXXXXXXXXXXXXMSNEIGAIEKAIIWPQY 523
QELKEAALEPS+EKIFKIDQMGRWF+ MSNEIGAIEKA+IWPQY
Sbjct: 61 QELKEAALEPSMEKIFKIDQMGRWFVAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQY 120
Query: 524 VKDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAGMLVQS 703
VKDRIHSTYMYLAGSIGLTA+SALAV+RTPALMNFMM GSWVTIGATFAAMIGAGMLV S
Sbjct: 121 VKDRIHSTYMYLAGSIGLTALSALAVARTPALMNFMMTGSWVTIGATFAAMIGAGMLVHS 180
Query: 704 ISYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSE 883
ISY++SPGPKHLAW+LHSGVMGAVVAPLTILGGPLL+RAAWYTAGIVGGLSTVAMCAPSE
Sbjct: 181 ISYEQSPGPKHLAWMLHSGVMGAVVAPLTILGGPLLLRAAWYTAGIVGGLSTVAMCAPSE 240
Query: 884 KFLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAIYGGISSF 1027
KFLNMGAPLGVGLGLVF SSLGSMFLPPT+VAGATLYSVA+YGG+ F
Sbjct: 241 KFLNMGAPLGVGLGLVFASSLGSMFLPPTSVAGATLYSVAMYGGLVLF 288
Score = 44.3 bits (103), Expect(3) = e-146
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = +3
Query: 1020 VLFSMFLLYDTQKVIKRAEVVPNVRSSK 1103
VLFSMFLLYDTQKVIKRAE+ P + K
Sbjct: 286 VLFSMFLLYDTQKVIKRAEITPMYGAQK 313
Score = 28.1 bits (61), Expect(3) = e-146
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 1084 PM*GVPKYDPLNSMLGI 1134
PM G KYDP+NSML I
Sbjct: 307 PMYGAQKYDPINSMLTI 323
>ref|NP_510963.1| growth hormone-inducible transmembrane protein [Mus musculus].
Length = 346
Score = 489 bits (1258), Expect(3) = e-146
Identities = 247/288 (85%), Positives = 261/288 (90%), Gaps = 1/288 (0%)
Frame = +2
Query: 167 MLAARLVCLRTLPSRVFHPTF-TKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTG 343
MLAARLVCLRTLPSRVF PTF TKASP+VKNSITKNQWL+TPSREYATKTRI RGKTG
Sbjct: 1 MLAARLVCLRTLPSRVFQPTFITKASPLVKNSITKNQWLVTPSREYATKTRIRTHRGKTG 60
Query: 344 QELKEAALEPSVEKIFKIDQMGRWFIXXXXXXXXXXXXXXXXXMSNEIGAIEKAIIWPQY 523
QELKEAALEPS+EKIFKIDQMGRWF+ MSNEIGAIEKA+IWPQY
Sbjct: 61 QELKEAALEPSMEKIFKIDQMGRWFVAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQY 120
Query: 524 VKDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAGMLVQS 703
VKDRIHSTYMYLAGSIGLTA+SALAV+RTPALMNFMM GSWVTIGATFAAMIGAGMLV S
Sbjct: 121 VKDRIHSTYMYLAGSIGLTALSALAVARTPALMNFMMTGSWVTIGATFAAMIGAGMLVHS 180
Query: 704 ISYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSE 883
ISY++SPGPKHLAW+LHSGVMGAVVAPLTILGGPLL+RAAWYTAGIVGGLSTVAMCAPSE
Sbjct: 181 ISYEQSPGPKHLAWMLHSGVMGAVVAPLTILGGPLLLRAAWYTAGIVGGLSTVAMCAPSE 240
Query: 884 KFLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAIYGGISSF 1027
KFLNMGAPLGVGLGLVF SSLGSMFLPPT+VAGATLYSVA+YGG+ F
Sbjct: 241 KFLNMGAPLGVGLGLVFASSLGSMFLPPTSVAGATLYSVAMYGGLVLF 288
Score = 44.3 bits (103), Expect(3) = e-146
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = +3
Query: 1020 VLFSMFLLYDTQKVIKRAEVVPNVRSSK 1103
VLFSMFLLYDTQKVIKRAE+ P + K
Sbjct: 286 VLFSMFLLYDTQKVIKRAEITPMYGAQK 313
Score = 28.1 bits (61), Expect(3) = e-146
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 1084 PM*GVPKYDPLNSMLGI 1134
PM G KYDP+NSML I
Sbjct: 307 PMYGAQKYDPINSMLTI 323
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,234,096
Number of extensions: 1122932
Number of successful extensions: 3602
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3594
Number of HSP's successfully gapped: 6
Length of query: 378
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 275
Effective length of database: 12,523,851
Effective search space: 3444059025
Effective search space used: 3444059025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012516
(1134 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055209.2| growth hormone-inducible transmembrane protein ... 504 e-151
>ref|NP_055209.2| growth hormone-inducible transmembrane protein [Homo sapiens].
Length = 345
Score = 504 bits (1297), Expect(3) = e-151
Identities = 250/287 (87%), Positives = 264/287 (91%)
Frame = +2
Query: 167 MLAARLVCLRTLPSRVFHPTFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTGQ 346
MLAARLVCLRTLPSRVFHP FTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRG+TGQ
Sbjct: 1 MLAARLVCLRTLPSRVFHPAFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGRTGQ 60
Query: 347 ELKEAALEPSVEKIFKIDQMGRWFIXXXXXXXXXXXXXXXXXMSNEIGAIEKAIIWPQYV 526
ELKEAALEPS+EKIFKIDQMGRWF+ +SNEIGAIEKA+IWPQYV
Sbjct: 61 ELKEAALEPSMEKIFKIDQMGRWFVAGGAAVGLGALCYYGLGLSNEIGAIEKAVIWPQYV 120
Query: 527 KDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAGMLVQSI 706
KDRIHSTYMYLAGSIGLTA+SA+A+SRTP LMNFMM+GSWVTIG TFAAM+GAGMLV+SI
Sbjct: 121 KDRIHSTYMYLAGSIGLTALSAIAISRTPVLMNFMMRGSWVTIGVTFAAMVGAGMLVRSI 180
Query: 707 SYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK 886
YD+SPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK
Sbjct: 181 PYDQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEK 240
Query: 887 FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAIYGGISSF 1027
FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVA+YGG+ F
Sbjct: 241 FLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAMYGGLVLF 287
Score = 43.5 bits (101), Expect(3) = e-151
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = +3
Query: 1020 VLFSMFLLYDTQKVIKRAEVVP 1085
VLFSMFLLYDTQKVIKRAEV P
Sbjct: 285 VLFSMFLLYDTQKVIKRAEVSP 306
Score = 30.4 bits (67), Expect(3) = e-151
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +1
Query: 1084 PM*GVPKYDPLNSMLGI 1134
PM GV KYDP+NSML I
Sbjct: 306 PMYGVQKYDPINSMLSI 322
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,165,905
Number of extensions: 1330130
Number of successful extensions: 4423
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4409
Number of HSP's successfully gapped: 3
Length of query: 378
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,868,908
Effective search space: 4074080792
Effective search space used: 4074080792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012516
(1134 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 379 e-102
gb|GL894649.2| Sus scrofa unplaced genomic scaffold ChrUScaf2533 325 3e-86
>Sscrofa_Chr14
|| Length = 153851969
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 758 ggtgtgatgggtgcggtggtggctcctttgacgatattaggggggcctcttctcatcagg 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92201546 ggtgtgatgggtgcggtggtggctcctttgacgatattaggggggcctcttctcatcagg 92201605
Query: 818 gctgcatggtacacagctggcatcgtaggaggcctctccactgtggccatgtgtgcgccc 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92201606 gctgcatggtacacagctggcatcgtaggaggcctctccactgtggccatgtgtgcgccc 92201665
Query: 878 agtgagaagtttctgaacatgggagcacccctgggcgtgggcctgggtctcgtctttgta 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92201666 agtgagaagtttctgaacatgggagcacccctgggcgtgggcctgggtctcgtctttgta 92201725
Query: 938 tcctcactggg 948
|||||||||||
Sbjct: 92201726 tcctcactggg 92201736
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 129 agcatttcagatctgcttggtaaacctggtgtgccaccatgctagcggcaagactcgtgt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92191923 agcatttcagatctgcttggtaaacctggtgtgccaccatgctagcggcaagactcgtgt 92191982
Query: 189 gtctccggactctaccctccagagttttccatccaactttcaccaaggcctcccctgttg 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92191983 gtctccggactctaccctccagagttttccatccaactttcaccaaggcctcccctgttg 92192042
Query: 249 tgaagaattccatcacaaagaatcaatggcttttaacacccagcaggg 296
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92192043 tgaagaattccatcacaaagaatcaatggcttttaacacccagcaggg 92192090
Score = 285 bits (144), Expect = 3e-74
Identities = 170/176 (96%), Gaps = 2/176 (1%)
Strand = Plus / Plus
Query: 947 ggatctatgtttcttccacctaccactgtggctggtgccactctatactcagtggcaatt 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92202537 ggatctatgtttcttccacctaccactgtggctggtgccactctatactcagtggcaatt 92202596
Query: 1007 tacggtggaataagttcttttcagcatgtttcttctgtatgatacacagaaagtaatcaa 1066
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92202597 tacggtgg-attagttcttttcagcatgtttcttctgtatgatacacagaaagtaatcaa 92202655
Query: 1067 acgtgcagaagtagtacccaatgtaaggagttccaaaatatgatcccctcaattcg 1122
|||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||
Sbjct: 92202656 acgtgcagaagtagta-ccaatgtatggagttcaaaaatatgatcccatcaattcg 92202710
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 508 aatttggcctcagtatgtgaaagatagaattcattcaacttatatgtacttagcaggaag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92194710 aatttggcctcagtatgtgaaagatagaattcattcaacttatatgtacttagcaggaag 92194769
Query: 568 tattggtttaacagctatgtctgctctggcagtgagcagaactcctgctctcatgaactt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92194770 tattggtttaacagctatgtctgctctggcagtgagcagaactcctgctctcatgaactt 92194829
Query: 628 catgatgaaaggctcttgggtg 649
||||||||||||||||||||||
Sbjct: 92194830 catgatgaaaggctcttgggtg 92194851
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 1 gttgcgtcactgtgagcaaaagggactgcgctcaaagtccgtaaggggtgggcggagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92190451 gttgcgtcactgtgagcaaaagggactgcgctcaaagtccgtaaggggtgggcggagggg 92190510
Query: 61 ttaggaggtgtgcgcggttgacttccgccggcgaaagggaactgcgcgcttgaggtgaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92190511 ttaggaggtgtgcgcggttgacttccgccggcgaaagggaactgcgcgcttgaggtgaca 92190570
Query: 121 agggactgag 130
||||||||||
Sbjct: 92190571 agggactgag 92190580
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 396 ttgatcagatgggaagatggtttattgctggaggggctgctgttggtcttggagcgctgt 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92194167 ttgatcagatgggaagatggtttattgctggaggggctgctgttggtcttggagcgctgt 92194226
Query: 456 gctactatggcttgggaatgtctaatgagattggagctattgaaaaggccat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92194227 gctactatggcttgggaatgtctaatgagattggagctattgaaaaggccat 92194278
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 649 gacaattggtgcaacctttgcagccatgattggagctggaatgctggtacaatcaatatc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92199261 gacaattggtgcaacctttgcagccatgattggagctggaatgctggtacaatcaatatc 92199320
Query: 709 atatgaccggagcccaggcccaaagcatcttgcttggttactacattctggt 760
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92199321 atatgaccggagcccaggcccaaagcatcttgcttggttactacattctggt 92199372
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 295 ggaatatgctaccaagacaagaattgggatccgccgtgggaaaactggccaagaactcaa 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92193507 ggaatatgctaccaagacaagaattgggatccgccgtgggaaaactggccaagaactcaa 92193566
Query: 355 ggaggcagctttggaaccatcagtggaaaaaatatttaaaa 395
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 92193567 ggaggcagctttggaaccatcagtggaaaaaatatttaaaa 92193607
>gb|GL894649.2| Sus scrofa unplaced genomic scaffold ChrUScaf2533
Length = 59987
Score = 325 bits (164), Expect = 3e-86
Identities = 537/656 (81%), Gaps = 14/656 (2%)
Strand = Plus / Minus
Query: 216 tccatccaactttcaccaaggcctcccctgttgtgaagaattccatcacaaagaatcaat 275
|||||| ||||||||| |||||||||| | |||| | ||||||||||||||||||||||
Sbjct: 6546 tccatctaactttcactaaggcctcccaagctgtggaaaattccatcacaaagaatcaat 6487
Query: 276 ggcttttaacacccagcagggaatatgctaccaagacaagaattgggatccgccgtggga 335
|||| |||||||||||||| |||||||| |||||| |||| ||||| | | | |
Sbjct: 6486 ggctcttaacacccagcagagaatatgccaccaaggcaag-----ggatctggcaaagaa 6432
Query: 336 aaactggccaagaactcaa-ggaggcagctttggaaccatcagtggaaaaaatatttaaa 394
| ||||||||| ||||||| ||| || || |||||| |||| ||||| |||||||||||
Sbjct: 6431 atactggccaaaaactcaaaggaagctgccttggaatcatcgatggaagaaatatttaaa 6372
Query: 395 attgatcagatgggaagatggtttattgctggaggggctgctgttggtcttggagcgctg 454
||||||||||| ||| | ||| |||| |||||||||||| | |||||||||| ||
Sbjct: 6371 attgatcagataggatcaa---ttactgcttgaggggctgctgctagtcttggagcattg 6315
Query: 455 tgctactatggcttgggaatgtctaatgagattggagctattgaaaaggccataatttgg 514
|||| || |||| |||||||||| || |||||||||||| |||||||| ||||||||
Sbjct: 6314 cactacaatagctttggaatgtctattgggattggagctatggaaaaggctgtaatttgg 6255
Query: 515 cctcagtatgtgaaagatagaattcattcaacttatatgtacttagcaggaagtattggt 574
|||||| ||||||| |||||| ||||||| || | ||| |||||||||||||| |||
Sbjct: 6254 cctcagcatgtgaaggatagagttcattctacccacgtgtccttagcaggaagtaccggt 6195
Query: 575 ttaacagctatgtctgctctggcagtgagcagaactcctgc-tctcatgaacttcatgat 633
||||||||| ||||||| || ||| ||||||||||| |||| ||||||||||||||||||
Sbjct: 6194 ttaacagctttgtctgccctagcaatgagcagaact-ctgcttctcatgaacttcatgat 6136
Query: 634 gaaaggctcttgggtgacaattggtgcaacctttgcagccatgattggagctggaatgct 693
| | | ||||| |||| ||||||| |||||||||| |||||||||||||||||| ||
Sbjct: 6135 aacaagttcttgagtgataattggt---acctttgcagacatgattggagctggaatcct 6079
Query: 694 ggtacaatcaatatcatatgaccggagcccaggcccaaagcatcttgcttggttactaca 753
|||||||| | | || |||||||||||||||||||||| || |||||||||||
Sbjct: 6078 ggtacaattggcactgtggaactggagcccaggcccaaagcatctcgcctggttactaca 6019
Query: 754 ttctggtgtgatgggtgcggtggtggctcctttgacgatattaggggggcctcttctcat 813
| || ||||| |||| || ||||| ||||| | || |||||||||| ||||||||||||
Sbjct: 6018 tgcttgtgtggtgggagcaatggtgactcctctaacaatattaggggagcctcttctcat 5959
Query: 814 cagggctgcatggtacacagctggcatcgtaggaggcctctccactgtggccatgt 869
||| | || ||||||||||| | || || ||| | ||||||||||| |||||||
Sbjct: 5958 cagagttgggtggtacacagcagccactgtgggacgtctctccactgttgccatgt 5903
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,743,030
Number of extensions: 214
Number of successful extensions: 214
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 12
Length of query: 1134
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1113
Effective length of database: 2,808,413,156
Effective search space: 3125763842628
Effective search space used: 3125763842628
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)