Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012518
(1837 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531639.2| PREDICTED: similar to ATP synthase beta chain, ... 897 0.0
Alignment gi|XP_857891.1| PREDICTED: similar to ATP synthase beta chain, ... 891 0.0
Alignment gi|XP_857932.1| PREDICTED: similar to ATP synthase beta chain, ... 682 0.0
Alignment gi|XP_857816.1| PREDICTED: similar to ATP synthase beta chain, ... 499 e-141
Alignment gi|XP_531858.2| PREDICTED: similar to ATPase, H+ transporting, ... 106 9e-23
Alignment gi|XP_543263.2| PREDICTED: similar to ATPase, H+ transporting, ... 99 1e-20
Alignment gi|XP_545103.1| PREDICTED: similar to ATPase, H+ transporting, ... 96 9e-20
Alignment gi|XP_855996.1| PREDICTED: similar to ATPase, H+ transporting, ... 92 1e-18
Alignment gi|XP_856034.1| PREDICTED: similar to ATPase, H+ transporting, ... 92 2e-18
Alignment gi|XP_859600.1| PREDICTED: similar to ATPase, H+ transporting, ... 91 5e-18
>ref|XP_531639.2| PREDICTED: similar to ATP synthase beta chain, mitochondrial
precursor isoform 1 [Canis familiaris].
Length = 527
Score = 897 bits (2319), Expect = 0.0
Identities = 465/484 (96%), Positives = 468/484 (96%)
Frame = +3
Query: 189 DYATQPSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG 368
DYATQ SPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG
Sbjct: 44 DYATQTSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG 103
Query: 369 ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA 548
ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA
Sbjct: 104 ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA 163
Query: 549 AIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVA 728
AIHAEAPEF+EMSVEQEILVTGIKVVDLLAPYA TVLIMELINNVA
Sbjct: 164 AIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA 223
Query: 729 KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL 908
KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL
Sbjct: 224 KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL 283
Query: 909 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 1088
TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE
Sbjct: 284 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 343
Query: 1089 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 1268
RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST
Sbjct: 344 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 403
Query: 1269 SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL 1448
SRIMDPNIVG+EHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL
Sbjct: 404 SRIMDPNIVGNEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL 463
Query: 1449 SQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 1628
SQPFQVAEVFTGH+GKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA
Sbjct: 464 SQPFQVAEVFTGHMGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 523
Query: 1629 EEHS 1640
EEHS
Sbjct: 524 EEHS 527
>ref|XP_857891.1| PREDICTED: similar to ATP synthase beta chain, mitochondrial
precursor isoform 3 [Canis familiaris].
Length = 527
Score = 891 bits (2302), Expect = 0.0
Identities = 462/484 (95%), Positives = 465/484 (96%)
Frame = +3
Query: 189 DYATQPSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG 368
DYATQ SPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG
Sbjct: 44 DYATQTSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG 103
Query: 369 ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA 548
ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQ
Sbjct: 104 ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQLW 163
Query: 549 AIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVA 728
AIHAEAPEF+EMSVEQEILVTGIKVVDLLAPYA TVLIMELINNVA
Sbjct: 164 AIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA 223
Query: 729 KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL 908
KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV LVYGQMNEPPGARARVAL
Sbjct: 224 KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVTLVYGQMNEPPGARARVAL 283
Query: 909 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 1088
TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE
Sbjct: 284 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 343
Query: 1089 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 1268
RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST
Sbjct: 344 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 403
Query: 1269 SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL 1448
SRIMDPNIVG+EHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL
Sbjct: 404 SRIMDPNIVGNEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL 463
Query: 1449 SQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 1628
SQPFQVAEVFTGH+GKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA
Sbjct: 464 SQPFQVAEVFTGHMGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 523
Query: 1629 EEHS 1640
EEHS
Sbjct: 524 EEHS 527
>ref|XP_857932.1| PREDICTED: similar to ATP synthase beta chain, mitochondrial
precursor isoform 4 [Canis familiaris].
Length = 474
Score = 682 bits (1759), Expect = 0.0
Identities = 374/486 (76%), Positives = 389/486 (80%), Gaps = 2/486 (0%)
Frame = +3
Query: 189 DYATQPSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG 368
DYATQ SPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG
Sbjct: 44 DYATQTSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG 103
Query: 369 ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA 548
ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA
Sbjct: 104 ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA 163
Query: 549 AIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVA 728
AIHAEAPEF+EMSVEQEILVTGIKVVDLLAPYA
Sbjct: 164 AIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKG------------------------- 198
Query: 729 KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL 908
G +F G G + + + + VA +G + G R
Sbjct: 199 ---GKIGLFGGAGV--------------GKTVLIMELINNVAKAHGGYSVFAGVGERT-- 239
Query: 909 TGLTVAEYFRDQEGQDVL--LFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 1082
+EG D+ + + A S+VSALLGRIPSAVGYQPTLATDMGTM
Sbjct: 240 -----------REGNDLYHEMIESGVINLKDATSKVSALLGRIPSAVGYQPTLATDMGTM 288
Query: 1083 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLD 1262
QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLD
Sbjct: 289 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLD 348
Query: 1263 STSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQR 1442
STSRIMDPNIVG+EHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQR
Sbjct: 349 STSRIMDPNIVGNEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQR 408
Query: 1443 FLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADK 1622
FLSQPFQVAEVFTGH+GKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADK
Sbjct: 409 FLSQPFQVAEVFTGHMGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADK 468
Query: 1623 LAEEHS 1640
LAEEHS
Sbjct: 469 LAEEHS 474
>ref|XP_857816.1| PREDICTED: similar to ATP synthase beta chain, mitochondrial
precursor isoform 2 [Canis familiaris].
Length = 257
Score = 499 bits (1286), Expect = e-141
Identities = 255/257 (99%), Positives = 257/257 (100%)
Frame = +3
Query: 870 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 1049
MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY
Sbjct: 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
Query: 1050 QPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAE 1229
QPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAE
Sbjct: 61 QPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAE 120
Query: 1230 LGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDK 1409
LGIYPAVDPLDSTSRIMDPNIVG+EHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDK
Sbjct: 121 LGIYPAVDPLDSTSRIMDPNIVGNEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDK 180
Query: 1410 LTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVG 1589
LTVSRARKIQRFLSQPFQVAEVFTGH+GKLVPLKETIKGFQQILAGEYDHLPEQAFYMVG
Sbjct: 181 LTVSRARKIQRFLSQPFQVAEVFTGHMGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVG 240
Query: 1590 PIEEAVAKADKLAEEHS 1640
PIEEAVAKADKLAEEHS
Sbjct: 241 PIEEAVAKADKLAEEHS 257
>ref|XP_531858.2| PREDICTED: similar to ATPase, H+ transporting, lysosomal 56/58kD, V1
subunit B, isoform 1 [Canis familiaris].
Length = 522
Score = 106 bits (264), Expect = 9e-23
Identities = 121/490 (24%), Positives = 209/490 (42%), Gaps = 26/490 (5%)
Frame = +3
Query: 189 DYATQPSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRE-TRLVLEVAQHL 365
+Y T P + + + + V+ V Q+ E I+N G + + VLEV+
Sbjct: 32 NYITHPRVTYRTVCSVNGPLVVLDHVKFAQYAE----IVNFTLPDGTQRSGQVLEVS--- 84
Query: 366 GESTVRTIAMDGTEGLVRGQKVLD-SGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQ 542
G + + +GT G+ + + +G ++ PV + LGR+ N G+PID+ + +
Sbjct: 85 GTKAIVQV-FEGTSGIDAQKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPVVMAED 143
Query: 543 FAAIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINN 722
F I+ + + +E++ TGI +D++ A + ++
Sbjct: 144 FLDINGQPINPHDRIYPEEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 203
Query: 723 V-----AKAHGGYS------VFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQ 869
+KA Y VFA +G + ++G + V L
Sbjct: 204 AGLVKKSKAVLDYHDDNFAIVFAAMGVNMETARFFKSDFEQNGTMG------NVCLFLNL 257
Query: 870 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 1049
N+P R LT AE+ Q + VL+ + ++ + +A EVSA +P G+
Sbjct: 258 ANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGF 317
Query: 1050 QPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAI 1223
+ TD+ T+ ER + GSIT + + +P DD+T P P T + + R +
Sbjct: 318 PGYMYTDLATIYERAGRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQL 377
Query: 1224 AELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKSLQDIIAILGMDE 1391
IYP V+ L S SR+M I +H DV+ + K +Q + A++G +
Sbjct: 378 HNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEA 437
Query: 1392 LSEEDKLTVSRARKIQR-FLSQ-PFQVAEVFTG-HLG-KLVPL--KETIKGF-QQILAGE 1550
L+ ED L + K +R F++Q P++ VF LG KL+ + KE +K Q +L
Sbjct: 438 LTSEDLLYLEFLHKFERSFINQGPYENRSVFESLDLGWKLLRIFPKEMLKRIPQSVLEDF 497
Query: 1551 YDHLPEQAFY 1580
Y + FY
Sbjct: 498 YSREVLEDFY 507
>ref|XP_543263.2| PREDICTED: similar to ATPase, H+ transporting, V1 subunit B, isoform
2 isoform 1 [Canis familiaris].
Length = 511
Score = 99.4 bits (246), Expect = 1e-20
Identities = 105/429 (24%), Positives = 181/429 (42%), Gaps = 25/429 (5%)
Frame = +3
Query: 342 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLD-SGAPIKIPVGPETLGRIMNVIGEPIDE 518
VLEV+ G V + +GT G+ + + +G ++ PV + LGR+ N G+PID
Sbjct: 86 VLEVS---GSKAVVQV-FEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141
Query: 519 RGPIKTKQFAAIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTV 698
+ + F I + +E++ TGI +D + A
Sbjct: 142 GPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNE 201
Query: 699 LIMELINNV-----AKAHGGYS------VFAGVGERTREGNDLYHEMIESGVINLKDATS 845
+ ++ +K YS VFA +G + E+G ++
Sbjct: 202 IAAQICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMD------ 255
Query: 846 KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 1025
V L N+P R LT AE+ Q + VL+ + ++ + +A EVSA
Sbjct: 256 NVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAARE 315
Query: 1026 RIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDA 1199
+P G+ + TD+ T+ ER + GSIT + + +P DD+T P P T +
Sbjct: 316 EVPGRRGFPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEG 375
Query: 1200 TTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKSLQDI 1367
+ R + IYP ++ L S SR+M I +H DV+ + K +Q +
Sbjct: 376 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAM 435
Query: 1368 IAILGMDELSEEDKLTVSRARKIQR-FLSQ-PFQVAEVFT-----GHLGKLVPLKETIKG 1526
A++G + L+ +D L + +K +R F++Q P++ V+ L ++ P KE +K
Sbjct: 436 KAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVYETLDIGWQLLRIFP-KEMLKR 494
Query: 1527 FQQILAGEY 1553
Q E+
Sbjct: 495 IPQSTLSEF 503
>ref|XP_545103.1| PREDICTED: similar to ATPase, H+ transporting, lysosomal 70kD, V1
subunit A, isoform 1 isoform 1 [Canis familiaris].
Length = 618
Score = 96.3 bits (238), Expect = 9e-20
Identities = 83/306 (27%), Positives = 140/306 (45%), Gaps = 22/306 (7%)
Frame = +3
Query: 603 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 782
L+TG +V+D L P TV+ L ++ ++ G GER E
Sbjct: 228 LLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKY---SNSDVIIYVGCGERGNE 284
Query: 783 GNDLYHEMIESGVI---NLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQ 953
+++ + E + ++ + ALV N P AR TG+T++EYFRD G
Sbjct: 285 MSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDM-GY 343
Query: 954 DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-------KG 1112
V + D+ R+ +A E+S L +P+ GY L + + ER K +G
Sbjct: 344 HVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPEREG 403
Query: 1113 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS---RIMD 1283
S++ V A+ P D +DP + T + L + +A+ +P+V+ L S S R +D
Sbjct: 404 SVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYTRALD 463
Query: 1284 PNIVGSEHYD--------VARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQ 1439
E+YD + ++ILQ+ + L +I+ ++G L+E DK+T+ A+ I+
Sbjct: 464 ------EYYDKHFTEFVPLRTKAKEILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIK 517
Query: 1440 -RFLSQ 1454
FL Q
Sbjct: 518 DDFLQQ 523
>ref|XP_855996.1| PREDICTED: similar to ATPase, H+ transporting, lysosomal 70kD, V1
subunit A, isoform 1 isoform 2 [Canis familiaris].
Length = 619
Score = 92.4 bits (228), Expect = 1e-18
Identities = 73/257 (28%), Positives = 124/257 (48%), Gaps = 22/257 (8%)
Frame = +3
Query: 750 VFAGVGERTREGNDLYHEMIESGVI---NLKDATSKVALVYGQMNEPPGARARVALTGLT 920
++ G GER E +++ + E + ++ + ALV N P AR TG+T
Sbjct: 275 IYVGCGERGNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREASIYTGIT 334
Query: 921 VAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT 1100
++EYFRD G V + D+ R+ +A E+S L +P+ GY L + + ER
Sbjct: 335 LSEYFRDM-GYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGR 393
Query: 1101 TK-------KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPL 1259
K +GS++ V A+ P D +DP + T + L + +A+ +P+V+ L
Sbjct: 394 VKCLGNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWL 453
Query: 1260 DSTS---RIMDPNIVGSEHYD--------VARGVQKILQDYKSLQDIIAILGMDELSEED 1406
S S R +D E+YD + ++ILQ+ + L +I+ ++G L+E D
Sbjct: 454 ISYSKYTRALD------EYYDKHFTEFVPLRTKAKEILQEEEDLAEIVQLVGKASLAETD 507
Query: 1407 KLTVSRARKIQ-RFLSQ 1454
K+T+ A+ I+ FL Q
Sbjct: 508 KITLEVAKLIKDDFLQQ 524
>ref|XP_856034.1| PREDICTED: similar to ATPase, H+ transporting, lysosomal 70kD, V1
subunit A, isoform 1 isoform 3 [Canis familiaris].
Length = 594
Score = 92.0 bits (227), Expect = 2e-18
Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 11/295 (3%)
Frame = +3
Query: 603 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 782
L+TG +V+D L P TV+ L ++ ++ G GER E
Sbjct: 228 LLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKY---SNSDVIIYVGCGERGNE 284
Query: 783 GNDLYHEMIESGVI---NLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQ 953
+++ + E + ++ + ALV N P AR TG+T++EYFRD G
Sbjct: 285 MSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDM-GY 343
Query: 954 DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-------KG 1112
V + D+ R+ +A E+S L +P+ GY L + + ER K +G
Sbjct: 344 HVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPEREG 403
Query: 1113 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI 1292
S++ V A+ P D +DP + T + L + +A+ +P+V+ L S ++
Sbjct: 404 SVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYTK------ 457
Query: 1293 VGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQ-RFLSQ 1454
+ILQ+ + L +I+ ++G L+E DK+T+ A+ I+ FL Q
Sbjct: 458 -------------EILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQ 499
>ref|XP_859600.1| PREDICTED: similar to ATPase, H+ transporting, V1 subunit B, isoform
2 isoform 2 [Canis familiaris].
Length = 504
Score = 90.5 bits (223), Expect = 5e-18
Identities = 102/429 (23%), Positives = 178/429 (41%), Gaps = 25/429 (5%)
Frame = +3
Query: 342 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLD-SGAPIKIPVGPETLGRIMNVIGEPIDE 518
VLEV+ G V + +GT G+ + + +G ++ PV + LGR+ N G+PID
Sbjct: 86 VLEVS---GSKAVVQV-FEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141
Query: 519 RGPIKTKQFAAIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTV 698
+ + F I + +E++ TGI +D + A
Sbjct: 142 GPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNE 201
Query: 699 LIMELINNV-----AKAHGGYS------VFAGVGERTREGNDLYHEMIESGVINLKDATS 845
+ ++ +K YS VFA +G + E+G ++
Sbjct: 202 IAAQICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMD------ 255
Query: 846 KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 1025
V L N+P R LT AE+ Q + VL+ + ++ + +A L
Sbjct: 256 NVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEA-------LR 308
Query: 1026 RIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDA 1199
+P G+ + TD+ T+ ER + GSIT + + +P DD+T P P T +
Sbjct: 309 EVPGRRGFPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEG 368
Query: 1200 TTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKSLQDI 1367
+ R + IYP ++ L S SR+M I +H DV+ + K +Q +
Sbjct: 369 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAM 428
Query: 1368 IAILGMDELSEEDKLTVSRARKIQR-FLSQ-PFQVAEVFT-----GHLGKLVPLKETIKG 1526
A++G + L+ +D L + +K +R F++Q P++ V+ L ++ P KE +K
Sbjct: 429 KAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVYETLDIGWQLLRIFP-KEMLKR 487
Query: 1527 FQQILAGEY 1553
Q E+
Sbjct: 488 IPQSTLSEF 496
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,315,354
Number of extensions: 2059529
Number of successful extensions: 6783
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6756
Number of HSP's successfully gapped: 12
Length of query: 612
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 503
Effective length of database: 15,240,880
Effective search space: 7666162640
Effective search space used: 7666162640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012518
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012518
(1837 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_786990.1| ATP synthase subunit beta, mitochondrial precur... 895 0.0
Alignment gi|NP_788827.1| V-type proton ATPase subunit B, kidney isoform ... 105 2e-22
Alignment gi|NP_788844.2| V-type proton ATPase subunit B, brain isoform i... 99 1e-20
Alignment gi|NP_776929.1| V-type proton ATPase catalytic subunit A [Bos t... 98 2e-20
Alignment gi|NP_001001146.1| V-type proton ATPase subunit B, brain isofor... 98 3e-20
Alignment gi|NP_777109.1| ATP synthase subunit alpha, mitochondrial precu... 93 7e-19
>ref|NP_786990.1| ATP synthase subunit beta, mitochondrial precursor [Bos taurus].
Length = 528
Score = 895 bits (2312), Expect = 0.0
Identities = 464/484 (95%), Positives = 466/484 (96%)
Frame = +3
Query: 189 DYATQPSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG 368
DYA Q SPSPKAGA TGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG
Sbjct: 45 DYAAQASPSPKAGATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG 104
Query: 369 ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA 548
ESTVRTIAMDGTEGLVRGQKVLDSGAPI+IPVGPETLGRIMNVIGEPIDERGPIKTKQFA
Sbjct: 105 ESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFA 164
Query: 549 AIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVA 728
AIHAEAPEF+EMSVEQEILVTGIKVVDLLAPYA TVLIMELINNVA
Sbjct: 165 AIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA 224
Query: 729 KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL 908
KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL
Sbjct: 225 KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL 284
Query: 909 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 1088
TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE
Sbjct: 285 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 344
Query: 1089 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 1268
RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST
Sbjct: 345 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 404
Query: 1269 SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL 1448
SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL
Sbjct: 405 SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL 464
Query: 1449 SQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 1628
SQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA
Sbjct: 465 SQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 524
Query: 1629 EEHS 1640
EEHS
Sbjct: 525 EEHS 528
>ref|NP_788827.1| V-type proton ATPase subunit B, kidney isoform [Bos taurus].
Length = 513
Score = 105 bits (261), Expect = 2e-22
Identities = 116/480 (24%), Positives = 206/480 (42%), Gaps = 25/480 (5%)
Frame = +3
Query: 189 DYATQPSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRE-TRLVLEVAQHL 365
+Y T P + + + + V+ V Q+ E I+N G + + VLEV+
Sbjct: 32 NYITHPRITYRTVCSVNGPLVVLDQVKFAQYAE----IVNFTLPNGTQRSGQVLEVS--- 84
Query: 366 GESTVRTIAMDGTEGLVRGQKVLD-SGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQ 542
G + + +GT G+ + + +G ++ PV + LGR+ N G+PID+ + +
Sbjct: 85 GTKAIVQV-FEGTSGIDAQKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPVVMAED 143
Query: 543 FAAIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINN 722
F I+ + + +E++ TGI +D++ A + ++
Sbjct: 144 FLDINGQPINPHDRIYPEEMIETGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 203
Query: 723 V-----AKAHGGYS------VFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQ 869
+KA Y VFA +G + ++G + V L
Sbjct: 204 AGLVKKSKAVLDYHDDNFAIVFAAMGVNMETARFFKSDFEQNGTMG------NVCLFLNL 257
Query: 870 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 1049
N+P R LT AE+ Q + VL+ + ++ + +A EVSA +P G+
Sbjct: 258 ANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGF 317
Query: 1050 QPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAI 1223
+ TD+ T+ ER + GSIT + + +P DD+T P P T + + R +
Sbjct: 318 PGYMYTDLATIYERAGRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQL 377
Query: 1224 AELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKSLQDIIAILGMDE 1391
IYP ++ L S SR+M I +H DV+ + K +Q + A++G +
Sbjct: 378 HNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEA 437
Query: 1392 LSEEDKLTVSRARKIQ-RFLSQ-PFQVAEVFTG-HLG-KLVPL--KETIKGFQQILAGEY 1553
L+ ED L + +K + +F++Q P++ VF LG KL+ KE +K Q + E+
Sbjct: 438 LTSEDLLYLEFLQKFEKKFINQGPYEKRSVFESLDLGWKLLRTFPKEMLKRIPQNIIDEF 497
>ref|NP_788844.2| V-type proton ATPase subunit B, brain isoform isoform 2 [Bos taurus].
Length = 511
Score = 99.4 bits (246), Expect = 1e-20
Identities = 105/429 (24%), Positives = 181/429 (42%), Gaps = 25/429 (5%)
Frame = +3
Query: 342 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLD-SGAPIKIPVGPETLGRIMNVIGEPIDE 518
VLEV+ G V + +GT G+ + + +G ++ PV + LGR+ N G+PID
Sbjct: 86 VLEVS---GSKAVVQV-FEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141
Query: 519 RGPIKTKQFAAIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTV 698
+ + F I + +E++ TGI +D + A
Sbjct: 142 GPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNE 201
Query: 699 LIMELINNV-----AKAHGGYS------VFAGVGERTREGNDLYHEMIESGVINLKDATS 845
+ ++ +K YS VFA +G + E+G ++
Sbjct: 202 IAAQICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMD------ 255
Query: 846 KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 1025
V L N+P R LT AE+ Q + VL+ + ++ + +A EVSA
Sbjct: 256 NVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAARE 315
Query: 1026 RIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDA 1199
+P G+ + TD+ T+ ER + GSIT + + +P DD+T P P T +
Sbjct: 316 EVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEG 375
Query: 1200 TTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKSLQDI 1367
+ R + IYP ++ L S SR+M I +H DV+ + K +Q +
Sbjct: 376 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAM 435
Query: 1368 IAILGMDELSEEDKLTVSRARKIQR-FLSQ-PFQVAEVFT-----GHLGKLVPLKETIKG 1526
A++G + L+ +D L + +K +R F++Q P++ V+ L ++ P KE +K
Sbjct: 436 KAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVYETLDIGWQLLRIFP-KEMLKR 494
Query: 1527 FQQILAGEY 1553
Q E+
Sbjct: 495 IPQSTLSEF 503
>ref|NP_776929.1| V-type proton ATPase catalytic subunit A [Bos taurus].
Length = 618
Score = 98.2 bits (243), Expect = 2e-20
Identities = 82/303 (27%), Positives = 139/303 (45%), Gaps = 19/303 (6%)
Frame = +3
Query: 603 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 782
L+TG +V+D L P TV+ L ++ ++ G GER E
Sbjct: 228 LLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKY---SNSDVIIYVGCGERGNE 284
Query: 783 GNDLYHEMIESGVI---NLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQ 953
+++ + E + ++ + ALV N P AR TG+T++EYFRD G
Sbjct: 285 MSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDM-GY 343
Query: 954 DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-------KG 1112
V + D+ R+ +A E+S L +P+ GY L + + ER K +G
Sbjct: 344 HVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPEREG 403
Query: 1113 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI 1292
S++ V A+ P D +DP + T + L + +A+ +P+V+ L S S+ M
Sbjct: 404 SVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMR--- 460
Query: 1293 VGSEHYD--------VARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQ-RF 1445
E+YD + ++ILQ+ + L +I+ ++G L+E DK+T+ A+ I+ F
Sbjct: 461 ALDEYYDKHFTEFVPLRTKAKEILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDF 520
Query: 1446 LSQ 1454
L Q
Sbjct: 521 LQQ 523
>ref|NP_001001146.1| V-type proton ATPase subunit B, brain isoform isoform 1 [Bos taurus].
Length = 510
Score = 97.8 bits (242), Expect = 3e-20
Identities = 104/429 (24%), Positives = 181/429 (42%), Gaps = 25/429 (5%)
Frame = +3
Query: 342 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLD-SGAPIKIPVGPETLGRIMNVIGEPIDE 518
VLEV+ G V + +GT G+ + + +G ++ PV + LGR+ N G+PID
Sbjct: 85 VLEVS---GSKAVVQV-FEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 140
Query: 519 RGPIKTKQFAAIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTV 698
+ + F I + +E++ TGI +D + A
Sbjct: 141 GPVVLAEDFLDIMGQPINPHFRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNE 200
Query: 699 LIMELINNV-----AKAHGGYS------VFAGVGERTREGNDLYHEMIESGVINLKDATS 845
+ ++ +K YS VFA +G + E+G ++
Sbjct: 201 IAAQICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMD------ 254
Query: 846 KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 1025
V L N+P R LT AE+ Q + VL+ + ++ + +A EVSA
Sbjct: 255 NVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAARE 314
Query: 1026 RIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDA 1199
+P G+ + TD+ T+ ER + GSIT + + +P DD+T P P T +
Sbjct: 315 EVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEG 374
Query: 1200 TTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKSLQDI 1367
+ R + IYP ++ L S SR+M I +H DV+ + K +Q +
Sbjct: 375 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAM 434
Query: 1368 IAILGMDELSEEDKLTVSRARKIQR-FLSQ-PFQVAEVFT-----GHLGKLVPLKETIKG 1526
A++G + L+ +D L + +K ++ F++Q P++ V+ L ++ P KE +K
Sbjct: 435 KAVVGEEALTSDDLLYLEFLQKFEKNFITQGPYENRTVYETLDIGWQLLRIFP-KEMLKR 493
Query: 1527 FQQILAGEY 1553
Q E+
Sbjct: 494 IPQSTLSEF 502
>ref|NP_777109.1| ATP synthase subunit alpha, mitochondrial precursor [Bos taurus].
Length = 553
Score = 93.2 bits (230), Expect = 7e-19
Identities = 97/401 (24%), Positives = 167/401 (41%), Gaps = 24/401 (5%)
Frame = +3
Query: 387 IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 563
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 116 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLK 175
Query: 564 APEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 743
AP + +E + TGIK VD L P T + ++ I N + + G
Sbjct: 176 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 235
Query: 744 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 902
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 236 TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 289
Query: 903 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 1082
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y + +
Sbjct: 290 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 348
Query: 1083 QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 1250
ER GS+T++ I A D++ P + D L + GI PA+
Sbjct: 349 LERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 408
Query: 1251 DPLDSTSRIMDPNIVGSEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 1427
+ S SR+ + + G K+ L Y+ + A G D L + +SR
Sbjct: 409 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 464
Query: 1428 RKIQRFLSQ--------PFQVAEVFT---GHLGKLVPLKET 1517
++ L Q QVA ++ G+L KL P K T
Sbjct: 465 VRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,426,635
Number of extensions: 2025430
Number of successful extensions: 6639
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6606
Number of HSP's successfully gapped: 6
Length of query: 612
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 504
Effective length of database: 14,107,870
Effective search space: 7110366480
Effective search space used: 7110366480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012518
(1837 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929445.1| PREDICTED: ATP synthase subunit beta, mitoch... 904 0.0
Alignment gi|XP_003125089.2| PREDICTED: v-type proton ATPase subunit B, k... 108 1e-23
Alignment gi|XP_003132841.1| PREDICTED: v-type proton ATPase subunit B, b... 99 6e-21
Alignment gi|NP_001004042.1| V-type proton ATPase catalytic subunit A [Su... 99 1e-20
Alignment gi|NP_001172071.1| ATP synthase subunit alpha, mitochondrial [S... 93 4e-19
>ref|XP_001929445.1| PREDICTED: ATP synthase subunit beta, mitochondrial [Sus scrofa].
Length = 528
Score = 904 bits (2336), Expect = 0.0
Identities = 469/484 (96%), Positives = 469/484 (96%)
Frame = +3
Query: 189 DYATQPSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG 368
DYATQPSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG
Sbjct: 45 DYATQPSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG 104
Query: 369 ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA 548
ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA
Sbjct: 105 ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA 164
Query: 549 AIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVA 728
AIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYA TVLIMELINNVA
Sbjct: 165 AIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA 224
Query: 729 KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL 908
KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL
Sbjct: 225 KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL 284
Query: 909 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 1088
TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE
Sbjct: 285 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 344
Query: 1089 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 1268
RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST
Sbjct: 345 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 404
Query: 1269 SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL 1448
SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL
Sbjct: 405 SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL 464
Query: 1449 SQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 1628
SQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA
Sbjct: 465 SQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 524
Query: 1629 EEHS 1640
EEHS
Sbjct: 525 EEHS 528
>ref|XP_003125089.2| PREDICTED: v-type proton ATPase subunit B, kidney isoform-like [Sus
scrofa].
Length = 460
Score = 108 bits (269), Expect = 1e-23
Identities = 103/410 (25%), Positives = 178/410 (43%), Gaps = 24/410 (5%)
Frame = +3
Query: 396 DGTEGLVRGQKVLD-SGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPE 572
+GT G+ + + +G ++ PV + LGR+ N G+PID + + F I+ +
Sbjct: 39 EGTSGIDAQKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDNGPVVMAEDFLDINGQPIN 98
Query: 573 FMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNV-----AKAH 737
+ +E++ TGI +D++ A + ++ +KA
Sbjct: 99 PHDRIYPEEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAV 158
Query: 738 GGYS------VFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARAR 899
Y VFA +G + E+G + V L N+P R
Sbjct: 159 LDYDDDNFAIVFAAMGVNMETARFFKSDFEENGTMG------NVCLFLNLANDPTIERII 212
Query: 900 VALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGT 1079
LT AE+ Q + VL+ + ++ + +A EVSA +P G+ + TD+ T
Sbjct: 213 TPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 272
Query: 1080 MQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVD 1253
+ ER + GSIT + + +P DD+T P P T + + R + IYP ++
Sbjct: 273 IYERAGRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPIN 332
Query: 1254 PLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVS 1421
L S SR+M I +H DV+ + K +Q + A++G + L+ ED L +
Sbjct: 333 VLPSLSRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEALTSEDLLYLE 392
Query: 1422 RARKIQR-FLSQ-PFQVAEVFTG-HLG-KLVPL--KETIKGFQQILAGEY 1553
+K +R F++Q P++ VF LG KL+ + KE +K Q + E+
Sbjct: 393 FLQKFERNFINQGPYEKRSVFESLDLGWKLLRIFPKEMLKRIPQSMIDEF 442
>ref|XP_003132841.1| PREDICTED: v-type proton ATPase subunit B, brain isoform-like [Sus
scrofa].
Length = 511
Score = 99.4 bits (246), Expect = 6e-21
Identities = 105/429 (24%), Positives = 181/429 (42%), Gaps = 25/429 (5%)
Frame = +3
Query: 342 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLD-SGAPIKIPVGPETLGRIMNVIGEPIDE 518
VLEV+ G V + +GT G+ + + +G ++ PV + LGR+ N G+PID
Sbjct: 86 VLEVS---GSKAVVQV-FEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141
Query: 519 RGPIKTKQFAAIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTV 698
+ + F I + +E++ TGI +D + A
Sbjct: 142 GPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNE 201
Query: 699 LIMELINNV-----AKAHGGYS------VFAGVGERTREGNDLYHEMIESGVINLKDATS 845
+ ++ +K YS VFA +G + E+G ++
Sbjct: 202 IAAQICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMD------ 255
Query: 846 KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 1025
V L N+P R LT AE+ Q + VL+ + ++ + +A EVSA
Sbjct: 256 NVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAARE 315
Query: 1026 RIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDA 1199
+P G+ + TD+ T+ ER + GSIT + + +P DD+T P P T +
Sbjct: 316 EVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEG 375
Query: 1200 TTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKSLQDI 1367
+ R + IYP ++ L S SR+M I +H DV+ + K +Q +
Sbjct: 376 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAM 435
Query: 1368 IAILGMDELSEEDKLTVSRARKIQR-FLSQ-PFQVAEVFT-----GHLGKLVPLKETIKG 1526
A++G + L+ +D L + +K +R F++Q P++ V+ L ++ P KE +K
Sbjct: 436 KAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVYETLDIGWQLLRIFP-KEMLKR 494
Query: 1527 FQQILAGEY 1553
Q E+
Sbjct: 495 IPQSTLSEF 503
>ref|NP_001004042.1| V-type proton ATPase catalytic subunit A [Sus scrofa].
Length = 618
Score = 98.6 bits (244), Expect = 1e-20
Identities = 82/303 (27%), Positives = 139/303 (45%), Gaps = 19/303 (6%)
Frame = +3
Query: 603 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 782
L+TG +V+D L P TV+ L ++ ++ G GER E
Sbjct: 228 LLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKY---SNSDVIIYVGCGERVNE 284
Query: 783 GNDLYHEMIESGVI---NLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQ 953
+++ + E + ++ + ALV N P AR TG+T++EYFRD G
Sbjct: 285 MSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDM-GY 343
Query: 954 DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-------KG 1112
V + ++ R+ +A E+S L +P+ GY L + + ER K +G
Sbjct: 344 HVSMMANSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPEREG 403
Query: 1113 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI 1292
S+T V A+ P D +DP + T + L + +A+ +P+V+ L S S+ M
Sbjct: 404 SVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMR--- 460
Query: 1293 VGSEHYD--------VARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQ-RF 1445
E+YD + ++ILQ+ + L +I+ ++G L+E DK+T+ A+ I+ F
Sbjct: 461 ALDEYYDKHFTEFVPLRTKAKEILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDF 520
Query: 1446 LSQ 1454
L Q
Sbjct: 521 LQQ 523
>ref|NP_001172071.1| ATP synthase subunit alpha, mitochondrial [Sus scrofa].
Length = 553
Score = 93.2 bits (230), Expect = 4e-19
Identities = 97/401 (24%), Positives = 167/401 (41%), Gaps = 24/401 (5%)
Frame = +3
Query: 387 IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 563
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 116 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 175
Query: 564 APEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 743
AP + +E + TGIK VD L P T + ++ I N + + G
Sbjct: 176 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 235
Query: 744 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 902
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 236 TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 289
Query: 903 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 1082
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y + +
Sbjct: 290 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 348
Query: 1083 QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 1250
ER GS+T++ I A D++ P + D L + GI PA+
Sbjct: 349 LERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 408
Query: 1251 DPLDSTSRIMDPNIVGSEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 1427
+ S SR+ + + G K+ L Y+ + A G D L + +SR
Sbjct: 409 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 464
Query: 1428 RKIQRFLSQ--------PFQVAEVFT---GHLGKLVPLKET 1517
++ L Q QVA ++ G+L KL P K T
Sbjct: 465 VRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,279,504
Number of extensions: 1339235
Number of successful extensions: 4129
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4108
Number of HSP's successfully gapped: 5
Length of query: 612
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 507
Effective length of database: 8,729,747
Effective search space: 4425981729
Effective search space used: 4425981729
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012518
(1837 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058054.2| ATP synthase subunit beta, mitochondrial precur... 884 0.0
Alignment gi|NP_598918.1| V-type proton ATPase subunit B, kidney isoform ... 108 1e-23
Alignment gi|NP_031534.2| V-type proton ATPase catalytic subunit A [Mus m... 98 2e-20
Alignment gi|NP_031535.2| V-type proton ATPase subunit B, brain isoform [... 98 2e-20
Alignment gi|NP_031531.1| ATP synthase subunit alpha, mitochondrial precu... 94 5e-19
>ref|NP_058054.2| ATP synthase subunit beta, mitochondrial precursor [Mus musculus].
Length = 529
Score = 884 bits (2283), Expect = 0.0
Identities = 457/483 (94%), Positives = 463/483 (95%)
Frame = +3
Query: 189 DYATQPSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG 368
DYA Q S +PKAG ATGRIVAVIGAVVDVQFDEGLPPILNALEVQGR++RLVLEVAQHLG
Sbjct: 45 DYAAQASAAPKAGTATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRDSRLVLEVAQHLG 104
Query: 369 ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA 548
ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA
Sbjct: 105 ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA 164
Query: 549 AIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVA 728
IHAEAPEF+EMSVEQEILVTGIKVVDLLAPYA TVLIMELINNVA
Sbjct: 165 PIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA 224
Query: 729 KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL 908
KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL
Sbjct: 225 KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL 284
Query: 909 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 1088
TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE
Sbjct: 285 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 344
Query: 1089 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 1268
RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST
Sbjct: 345 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 404
Query: 1269 SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL 1448
SRIMDPNIVG+EHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL
Sbjct: 405 SRIMDPNIVGNEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL 464
Query: 1449 SQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 1628
SQPFQVAEVFTGH+GKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA
Sbjct: 465 SQPFQVAEVFTGHMGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 524
Query: 1629 EEH 1637
EEH
Sbjct: 525 EEH 527
>ref|NP_598918.1| V-type proton ATPase subunit B, kidney isoform [Mus musculus].
Length = 513
Score = 108 bits (271), Expect = 1e-23
Identities = 117/480 (24%), Positives = 208/480 (43%), Gaps = 25/480 (5%)
Frame = +3
Query: 189 DYATQPSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRE-TRLVLEVAQHL 365
+Y T P + + + + V+ V Q+ E I+N G + + VLEVA
Sbjct: 32 NYITHPRVTYRTVCSVNGPLVVLDQVKFAQYAE----IVNFTLPDGTQRSGQVLEVA--- 84
Query: 366 GESTVRTIAMDGTEGLVRGQKVLD-SGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQ 542
G + + +GT G+ + + +G ++ PV + LGRI N G+PID+ + ++
Sbjct: 85 GTKAIVQV-FEGTSGIDSQKTTCEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPAVMAEE 143
Query: 543 FAAIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINN 722
F I+ + + +E++ TGI +D++ A + ++
Sbjct: 144 FLDINGQPINPHDRIYPEEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 203
Query: 723 V-----AKAHGGYS------VFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQ 869
+KA Y VFA +G + ++G + V L
Sbjct: 204 AGLVKKSKAVLDYHEDNFAIVFAAMGVNMETARFFKSDFEQNGTMG------NVCLFLNL 257
Query: 870 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 1049
N+P R LT AE+ Q + VL+ + ++ + +A EVSA +P G+
Sbjct: 258 ANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGF 317
Query: 1050 QPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAI 1223
+ TD+ T+ ER + GSIT + + +P DD+T P P T + + R +
Sbjct: 318 PGYMYTDLATIYERAGRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQL 377
Query: 1224 AELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKSLQDIIAILGMDE 1391
+YP ++ L S SR+M I +H DV+ + K +Q + A++G +
Sbjct: 378 HNRQVYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEA 437
Query: 1392 LSEEDKLTVSRARKIQR-FLSQ-PFQVAEVFTG-HLG-KLVPL--KETIKGFQQILAGEY 1553
L+ ED L + +K ++ F++Q P++ VF LG KL+ + KE +K Q + E+
Sbjct: 438 LTSEDLLYLEFLQKFEKNFITQGPYENRTVFESLDLGWKLLRIFPKEMLKRIPQSMTDEF 497
>ref|NP_031534.2| V-type proton ATPase catalytic subunit A [Mus musculus].
Length = 617
Score = 98.2 bits (243), Expect = 2e-20
Identities = 82/303 (27%), Positives = 139/303 (45%), Gaps = 19/303 (6%)
Frame = +3
Query: 603 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 782
L+TG +V+D L P TV+ L ++ ++ G GER E
Sbjct: 227 LLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKY---SNSDVIIYVGCGERGNE 283
Query: 783 GNDLYHEMIESGVI---NLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQ 953
+++ + E + ++ + ALV N P AR TG+T++EYFRD G
Sbjct: 284 MSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDM-GY 342
Query: 954 DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-------KG 1112
V + D+ R+ +A E+S L +P+ GY L + + ER K +G
Sbjct: 343 HVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPEREG 402
Query: 1113 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI 1292
S++ V A+ P D +DP + T + L + +A+ +P+V+ L S S+ M
Sbjct: 403 SVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMR--- 459
Query: 1293 VGSEHYD--------VARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQ-RF 1445
E+YD + ++ILQ+ + L +I+ ++G L+E DK+T+ A+ I+ F
Sbjct: 460 ALDEYYDKHFTEFVPLRTKAKEILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDF 519
Query: 1446 LSQ 1454
L Q
Sbjct: 520 LQQ 522
>ref|NP_031535.2| V-type proton ATPase subunit B, brain isoform [Mus musculus].
Length = 511
Score = 98.2 bits (243), Expect = 2e-20
Identities = 104/429 (24%), Positives = 181/429 (42%), Gaps = 25/429 (5%)
Frame = +3
Query: 342 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLD-SGAPIKIPVGPETLGRIMNVIGEPIDE 518
VLEV+ G V + +GT G+ + + +G ++ PV + LGR+ N G+PID
Sbjct: 86 VLEVS---GSKAVVQV-FEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141
Query: 519 RGPIKTKQFAAIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTV 698
+ + F I + +E++ TGI +D + A
Sbjct: 142 GPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNE 201
Query: 699 LIMELINNV-----AKAHGGYS------VFAGVGERTREGNDLYHEMIESGVINLKDATS 845
+ ++ +K YS VFA +G + E+G ++
Sbjct: 202 IAAQICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMD------ 255
Query: 846 KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 1025
V L N+P R LT AE+ Q + VL+ + ++ + +A EVSA
Sbjct: 256 NVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAARE 315
Query: 1026 RIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDA 1199
+P G+ + TD+ T+ ER + GSIT + + +P DD+T P P T +
Sbjct: 316 EVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEG 375
Query: 1200 TTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKSLQDI 1367
+ R + IYP ++ L S SR+M I +H DV+ + K +Q +
Sbjct: 376 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAM 435
Query: 1368 IAILGMDELSEEDKLTVSRARKIQR-FLSQ-PFQVAEVFT-----GHLGKLVPLKETIKG 1526
A++G + L+ +D L + +K ++ F++Q P++ V+ L ++ P KE +K
Sbjct: 436 KAVVGEEALTSDDLLYLEFLQKFEKNFITQGPYENRTVYETLDIGWQLLRIFP-KEMLKR 494
Query: 1527 FQQILAGEY 1553
Q E+
Sbjct: 495 IPQSTLSEF 503
>ref|NP_031531.1| ATP synthase subunit alpha, mitochondrial precursor [Mus musculus].
Length = 553
Score = 93.6 bits (231), Expect = 5e-19
Identities = 97/401 (24%), Positives = 167/401 (41%), Gaps = 24/401 (5%)
Frame = +3
Query: 387 IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 563
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 116 VVVFGNDKLIKEGDVVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 175
Query: 564 APEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 743
AP + +E + TGIK VD L P T + ++ I N + + G
Sbjct: 176 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 235
Query: 744 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 902
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 236 TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 289
Query: 903 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 1082
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y + +
Sbjct: 290 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 348
Query: 1083 QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 1250
ER GS+T++ I A D++ P + D L + GI PA+
Sbjct: 349 LERAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 408
Query: 1251 DPLDSTSRIMDPNIVGSEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 1427
+ S SR+ + + G K+ L Y+ + A G D L + +SR
Sbjct: 409 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 464
Query: 1428 RKIQRFLSQ--------PFQVAEVFT---GHLGKLVPLKET 1517
++ L Q QVA ++ G+L KL P K T
Sbjct: 465 VRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,056,291
Number of extensions: 1714889
Number of successful extensions: 5541
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5507
Number of HSP's successfully gapped: 5
Length of query: 612
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 505
Effective length of database: 12,403,707
Effective search space: 6263872035
Effective search space used: 6263872035
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012518
(1837 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001677.2| ATP synthase subunit beta, mitochondrial precur... 896 0.0
Alignment gi|NP_001683.2| V-type proton ATPase subunit B, kidney isoform ... 105 1e-22
Alignment gi|NP_001684.2| V-type proton ATPase subunit B, brain isoform [... 100 5e-21
Alignment gi|NP_001681.2| V-type proton ATPase catalytic subunit A [Homo ... 98 2e-20
Alignment gi|NP_001001937.1| ATP synthase subunit alpha, mitochondrial pr... 93 7e-19
Alignment gi|NP_004037.1| ATP synthase subunit alpha, mitochondrial precu... 93 7e-19
>ref|NP_001677.2| ATP synthase subunit beta, mitochondrial precursor [Homo sapiens].
Length = 529
Score = 896 bits (2316), Expect = 0.0
Identities = 465/484 (96%), Positives = 466/484 (96%)
Frame = +3
Query: 189 DYATQPSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG 368
DYA Q SPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG
Sbjct: 45 DYAAQTSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLG 104
Query: 369 ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA 548
ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA
Sbjct: 105 ESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFA 164
Query: 549 AIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVA 728
IHAEAPEFMEMSVEQEILVTGIKVVDLLAPYA TVLIMELINNVA
Sbjct: 165 PIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA 224
Query: 729 KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL 908
KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL
Sbjct: 225 KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVAL 284
Query: 909 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 1088
TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE
Sbjct: 285 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 344
Query: 1089 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 1268
RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST
Sbjct: 345 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 404
Query: 1269 SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL 1448
SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL
Sbjct: 405 SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL 464
Query: 1449 SQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 1628
SQPFQVAEVFTGH+GKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA
Sbjct: 465 SQPFQVAEVFTGHMGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 524
Query: 1629 EEHS 1640
EEHS
Sbjct: 525 EEHS 528
>ref|NP_001683.2| V-type proton ATPase subunit B, kidney isoform [Homo sapiens].
Length = 513
Score = 105 bits (262), Expect = 1e-22
Identities = 107/428 (25%), Positives = 186/428 (43%), Gaps = 24/428 (5%)
Frame = +3
Query: 342 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLD-SGAPIKIPVGPETLGRIMNVIGEPIDE 518
VLEVA G + + +GT G+ + + +G ++ PV + LGR+ N G+PID+
Sbjct: 80 VLEVA---GTKAIVQV-FEGTSGIDARKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 135
Query: 519 RGPIKTKQFAAIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTV 698
+ + F I+ + +E++ TGI +D++ A
Sbjct: 136 GPVVMAEDFLDINGQPINPHSRIYPEEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNE 195
Query: 699 LIMELINNV-----AKAHGGYS------VFAGVGERTREGNDLYHEMIESGVINLKDATS 845
+ ++ +KA Y VFA +G + ++G +
Sbjct: 196 IAAQICRQAGLVKKSKAVLDYHDDNFAIVFAAMGVNMETARFFKSDFEQNGTMG------ 249
Query: 846 KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 1025
V L N+P R LT AE+ Q + VL+ + ++ + +A EVSA
Sbjct: 250 NVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAARE 309
Query: 1026 RIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDA 1199
+P G+ + TD+ T+ ER + GSIT + + +P DD+T P P T +
Sbjct: 310 EVPGRRGFPGYMYTDLATIYERAGRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEG 369
Query: 1200 TTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKSLQDI 1367
+ R + IYP ++ L S SR+M I +H DV+ + K +Q +
Sbjct: 370 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAM 429
Query: 1368 IAILGMDELSEEDKLTVSRARKIQR-FLSQ-PFQVAEVFTG-HLG-KLVPL--KETIKGF 1529
A++G + L+ ED L + +K ++ F++Q P++ VF LG KL+ + KE +K
Sbjct: 430 KAVVGEEALTSEDLLYLEFLQKFEKNFINQGPYENRSVFESLDLGWKLLRIFPKEMLKRI 489
Query: 1530 QQILAGEY 1553
Q + E+
Sbjct: 490 PQAVIDEF 497
>ref|NP_001684.2| V-type proton ATPase subunit B, brain isoform [Homo sapiens].
Length = 511
Score = 100 bits (249), Expect = 5e-21
Identities = 106/429 (24%), Positives = 181/429 (42%), Gaps = 25/429 (5%)
Frame = +3
Query: 342 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLD-SGAPIKIPVGPETLGRIMNVIGEPIDE 518
VLEV+ G V + +GT G+ + + +G ++ PV + LGR+ N G+PID
Sbjct: 86 VLEVS---GSKAVVQV-FEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141
Query: 519 RGPIKTKQFAAIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTV 698
+ + F I + +E++ TGI +D + A
Sbjct: 142 GPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNE 201
Query: 699 LIMELINNV-----AKAHGGYS------VFAGVGERTREGNDLYHEMIESGVINLKDATS 845
+ ++ +K YS VFA +G + E+G ++
Sbjct: 202 IAAQICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMD------ 255
Query: 846 KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 1025
V L N+P R LT AE+ Q + VL+ + ++ + +A EVSA
Sbjct: 256 NVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAARE 315
Query: 1026 RIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDA 1199
+P G+ + TD+ T+ ER + GSIT + + +P DD+T P P T +
Sbjct: 316 EVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEG 375
Query: 1200 TTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKSLQDI 1367
+ R + IYP ++ L S SR+M I +H DV+ + K +Q +
Sbjct: 376 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAM 435
Query: 1368 IAILGMDELSEEDKLTVSRARKIQR-FLSQ-PFQVAEVFT-----GHLGKLVPLKETIKG 1526
A++G + L+ +D L + +K +R F++Q P++ VF L ++ P KE +K
Sbjct: 436 KAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVFETLDIGWQLLRIFP-KEMLKR 494
Query: 1527 FQQILAGEY 1553
Q E+
Sbjct: 495 IPQSTLSEF 503
>ref|NP_001681.2| V-type proton ATPase catalytic subunit A [Homo sapiens].
Length = 617
Score = 98.2 bits (243), Expect = 2e-20
Identities = 82/303 (27%), Positives = 139/303 (45%), Gaps = 19/303 (6%)
Frame = +3
Query: 603 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 782
L+TG +V+D L P TV+ L ++ ++ G GER E
Sbjct: 227 LLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKY---SNSDVIIYVGCGERGNE 283
Query: 783 GNDLYHEMIESGVI---NLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQ 953
+++ + E + ++ + ALV N P AR TG+T++EYFRD G
Sbjct: 284 MSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDM-GY 342
Query: 954 DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-------KG 1112
V + D+ R+ +A E+S L +P+ GY L + + ER K +G
Sbjct: 343 HVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPEREG 402
Query: 1113 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI 1292
S++ V A+ P D +DP + T + L + +A+ +P+V+ L S S+ M
Sbjct: 403 SVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMR--- 459
Query: 1293 VGSEHYD--------VARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQ-RF 1445
E+YD + ++ILQ+ + L +I+ ++G L+E DK+T+ A+ I+ F
Sbjct: 460 ALDEYYDKHFTEFVPLRTKAKEILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDF 519
Query: 1446 LSQ 1454
L Q
Sbjct: 520 LQQ 522
>ref|NP_001001937.1| ATP synthase subunit alpha, mitochondrial precursor [Homo sapiens].
Length = 553
Score = 93.2 bits (230), Expect = 7e-19
Identities = 97/401 (24%), Positives = 167/401 (41%), Gaps = 24/401 (5%)
Frame = +3
Query: 387 IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 563
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 116 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 175
Query: 564 APEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 743
AP + +E + TGIK VD L P T + ++ I N + + G
Sbjct: 176 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 235
Query: 744 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 902
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 236 SDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 289
Query: 903 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 1082
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y + +
Sbjct: 290 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 348
Query: 1083 QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 1250
ER GS+T++ I A D++ P + D L + GI PA+
Sbjct: 349 LERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 408
Query: 1251 DPLDSTSRIMDPNIVGSEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 1427
+ S SR+ + + G K+ L Y+ + A G D L + +SR
Sbjct: 409 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 464
Query: 1428 RKIQRFLSQ--------PFQVAEVFT---GHLGKLVPLKET 1517
++ L Q QVA ++ G+L KL P K T
Sbjct: 465 VRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505
>ref|NP_004037.1| ATP synthase subunit alpha, mitochondrial precursor [Homo sapiens].
Length = 553
Score = 93.2 bits (230), Expect = 7e-19
Identities = 97/401 (24%), Positives = 167/401 (41%), Gaps = 24/401 (5%)
Frame = +3
Query: 387 IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 563
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 116 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 175
Query: 564 APEFMEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 743
AP + +E + TGIK VD L P T + ++ I N + + G
Sbjct: 176 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 235
Query: 744 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 902
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 236 SDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 289
Query: 903 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 1082
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y + +
Sbjct: 290 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 348
Query: 1083 QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 1250
ER GS+T++ I A D++ P + D L + GI PA+
Sbjct: 349 LERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 408
Query: 1251 DPLDSTSRIMDPNIVGSEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 1427
+ S SR+ + + G K+ L Y+ + A G D L + +SR
Sbjct: 409 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 464
Query: 1428 RKIQRFLSQ--------PFQVAEVFT---GHLGKLVPLKET 1517
++ L Q QVA ++ G+L KL P K T
Sbjct: 465 VRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 73,199,161
Number of extensions: 2035179
Number of successful extensions: 6817
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6776
Number of HSP's successfully gapped: 6
Length of query: 612
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 504
Effective length of database: 14,737,052
Effective search space: 7427474208
Effective search space used: 7427474208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012518
(1837 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 2238 0.0
Sscrofa_Chr05 513 e-142
>Sscrofa_Chr14
|| Length = 153851969
Score = 2238 bits (1129), Expect = 0.0
Identities = 1593/1743 (91%), Gaps = 11/1743 (0%)
Strand = Plus / Minus
Query: 66 tttgtgggtcgtgtggcctctgcctcggcctctggggccttgcggggactcagcccttca 125
|||||| ||||||||||| |||||||||||||||||||||| | | |||||||||||||
Sbjct: 131848287 tttgtgagtcgtgtggccactgcctcggcctctggggcctttcaagaactcagcccttca 131848228
Query: 126 gcgccgctaccccaagcccagctcttactgcgggccgctccggcagcgctccagcctgcc 185
|| |||||| |||||||||||| |||||||||||||||| || | |||||||||||
Sbjct: 131848227 atgctgctaccacaagcccagctcctactgcgggccgctccagccacactccagcctgca 131848168
Query: 186 agagactatgccactcaaccatctccatcgccaaaggcaggcgccgccactgggcgaatc 245
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 131848167 ggagactatgccactcaaacatctccattgccaaaggcaggcgccgccactgggcgcatt 131848108
Query: 246 gtggcagtcattggtgcagtggtggatgtccagtttgatgaaggactgccacccatccta 305
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 131848107 gtggcagtcattggtgcagtggtggacgtccagtttgatgaaggactgccacccatccta 131848048
Query: 306 aatgccctggaagtgcaaggcagggagaccaggctggttttggaggtggcccagcatttg 365
||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 131848047 aatgccctgaaaatgcaaggcagggagaccaggctggttctggaggtggcccagaatttg 131847988
Query: 366 ggtgagagtactgtaaggaccattgccat----ggatggtacagaaggcctggttagagg 421
| |||||||| ||||||| |||||||| |||||||||||||| | | ||||||||
Sbjct: 131847987 ag--agagtactttaaggacgattgccatccacggatggtacagaagactttgttagagg 131847930
Query: 422 ccagaaagtcctagattctggtgcaccaatcaaaattcctgttgggcctgagaccttggg 481
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 131847929 acagaaagtcctggattctggtgcaccagtcaaaattcctgttgggcctgagaccttggg 131847870
Query: 482 cagaatcatgaatgtcattggagaacctattgatgagagaggtcccatcaaaaccaaaca 541
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 131847869 aagaatcatgaatgtcactggagaacctattgatgagcgaggtcccatcaaaaccaaaca 131847810
Query: 542 atttgctgctattcatgctgaggctcctgaattcatggagatgagtgttgagcaggaaat 601
||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 131847809 atttgctgctatttatgctgaggctcttgaattcatggagatgaatgttgagcaggaaat 131847750
Query: 602 tctggttaccggtatcaaggttgtggatctactggctccctatgccaagggtggcaaaat 661
|||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 131847749 tctgattactggtatcaaggttgtggacctactggctccttatgccaagggtggcaaaat 131847690
Query: 662 tgggctctttggtggtgctggagttggcaagacagtactgatcatggagttaatcaacaa 721
||||||||||| ||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct: 131847689 tgggctctttgctggtgctggagttggcaaggcagtactgatgatggagctaatcaacaa 131847630
Query: 722 cgtagccaaagctcatggtggttactccgtgtttgctggtgttggcgaaaggacccgtga 781
| ||| ||||||||||||||||||||| ||| ||||||||||||| || |||||| ||||
Sbjct: 131847629 catagtcaaagctcatggtggttactcagtggttgctggtgttggtgagaggaccagtga 131847570
Query: 782 gggcaatgacttataccatgaaatgattgagtctggtgtcatcaacttaaaagatgctac 841
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 131847569 gggcaatgacttataccatgaaatgatcgagtctggtgttatcaacttaaaagatgctac 131847510
Query: 842 ctctaaggtagcgctggtgtacggtcaaatgaatgaacctccgggtgctcgggcccgggt 901
||| |||||||| |||||||| ||||||| |||||| || ||||||| | | |||
Sbjct: 131847509 ctccaaggtagcactggtgtatggtcaaacaaatgaaatgcctggtgctcagtctttggt 131847450
Query: 902 agctctgactggactgactgtagctgaatacttcagagaccaagagggtcaagatgtact 961
||||| || | ||||||||||||||||||||||||||| |||| | ||||||||||||
Sbjct: 131847449 agctcggagttcactgactgtagctgaatacttcagagatgaagaagatcaagatgtact 131847390
Query: 962 gctgtttattgataacatctttcgcttcacccaggctggctcagaagtgtctgctttatt 1021
||||||| ||||||| ||||| |||||||||||||||||||||| ||||||| ||||||
Sbjct: 131847389 gctgttttttgataagttcttttgcttcacccaggctggctcagaggtgtctgttttatt 131847330
Query: 1022 gggcagaatcccttctgcggtgggttatcagcctaccctggccactgacatgggtaccat 1081
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 131847329 gggcagaatcccttctgctgtgggttatcagcctaccctggccgctgacatgggtgccat 131847270
Query: 1082 gcaggaaagaatcaccaccaccaaaaagggatctatcacctctgtacaggccatctatgt 1141
|||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| ||
Sbjct: 131847269 gcaggaaagaatcaccaccaccggaaaaggatctatcacgtctgtacaggccatctacgt 131847210
Query: 1142 gccagctgatgacttgactgaccctgctcctgccaccacctttgcgcatttggatgctac 1201
|| |||||||||||||||| |||||| |||||||| |||||||| ||||||||||||||
Sbjct: 131847209 acctgctgatgacttgactgcccctgcccctgccactacctttgcccatttggatgctac 131847150
Query: 1202 cactgtgctatcccgtgctattgctgagctgggcatttatcccgctgtggatcctctgga 1261
||||| ||| |||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 131847149 cactgcgctgtcccatgctattgctgagctgggcatttatcttgctgtggatcctctgga 131847090
Query: 1262 ctctacttctcgaatcatggatcccaacattgttggcagtgagcattatgatgttgcccg 1321
|| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 131847089 cttcacttctcgcatcatggatcccaacattgttggcagtgagcattgtgatgttgcccg 131847030
Query: 1322 tggagtgcaaaagatcctacaggactacaaatccctccaagatatcattgccatcctggg 1381
||||||| ||||||| ||||||||| ||||||||||||| |||||||||||||||||| |
Sbjct: 131847029 tggagtggaaaagatgctacaggacgacaaatccctccaggatatcattgccatcctgag 131846970
Query: 1382 catggatgaactttctgaggaagacaagttaactgtgtcccgtgcacggaaaatacagcg 1441
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 131846969 tgtgaatgaactttctgaggaagacaagttaactgtgttccgtgcacggaaaatacggca 131846910
Query: 1442 tttcctgtctcagccattccaggttgctgaggtctttacaggtcacttggggaagttggt 1501
|||| |||||||||||||||||||||| ||||||||||||| ||| |||||||| ||||
Sbjct: 131846909 tttcttgtctcagccattccaggttgccgaggtctttacagatcatatggggaagctggt 131846850
Query: 1502 acccctgaaggagaccatcaaaggattccagcagattttggcaggtgaatatgaccatct 1561
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 131846849 acccctgaaggagaccatcaaaggattccagcagattttggcagctgaatatgaccatct 131846790
Query: 1562 cccagaacaggctttctatatggtgggacccattgaagaagctgtggcaaaagctgataa 1621
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131846789 cccttaacaggctttctatatggtgggacccattgaagaagctgtggcaaaagctgataa 131846730
Query: 1622 actggctgaagagcactcatgagggagtccttttggcaaactaagtactcatcctctttg 1681
| ||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 131846729 gcgggctgaagagcactcgtgagggagtcctttcggcaaaccaagtactcatcctctttg 131846670
Query: 1682 -tggccctct-cttgcccctcatccaaaatgcagttttccctgtaggccatgagagcctt 1739
| |||||| |||||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct: 131846669 cagtccctctccttgcccctcatgcaaa---cagttttctctgtaggccatgagagcctt 131846613
Query: 1740 gattgaagacattgtattctgtctgaagagtatttaaggtttccaataaaatgtacatcc 1799
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 131846612 gattgaagacattgtattctgcctgaagagtatttaaggtttccaataaaatgtacatcc 131846553
Query: 1800 ctc 1802
|||
Sbjct: 131846552 ctc 131846550
>Sscrofa_Chr05
|| Length = 111506441
Score = 513 bits (259), Expect = e-142
Identities = 259/259 (100%)
Strand = Plus / Minus
Query: 1544 aggtgaatatgaccatctcccagaacaggctttctatatggtgggacccattgaagaagc 1603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23659343 aggtgaatatgaccatctcccagaacaggctttctatatggtgggacccattgaagaagc 23659284
Query: 1604 tgtggcaaaagctgataaactggctgaagagcactcatgagggagtccttttggcaaact 1663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23659283 tgtggcaaaagctgataaactggctgaagagcactcatgagggagtccttttggcaaact 23659224
Query: 1664 aagtactcatcctctttgtggccctctcttgcccctcatccaaaatgcagttttccctgt 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23659223 aagtactcatcctctttgtggccctctcttgcccctcatccaaaatgcagttttccctgt 23659164
Query: 1724 aggccatgagagccttgattgaagacattgtattctgtctgaagagtatttaaggtttcc 1783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23659163 aggccatgagagccttgattgaagacattgtattctgtctgaagagtatttaaggtttcc 23659104
Query: 1784 aataaaatgtacatccctc 1802
|||||||||||||||||||
Sbjct: 23659103 aataaaatgtacatccctc 23659085
Score = 420 bits (212), Expect = e-114
Identities = 215/216 (99%)
Strand = Plus / Minus
Query: 1129 aggccatctatgtgccagctgatgacttgactgaccctgctcctgccaccacctttgcgc 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23661709 aggccatctatgtgccagctgatgacttgactgaccctgctcctgccaccacctttgcgc 23661650
Query: 1189 atttggatgctaccactgtgctatcccgtgctattgctgagctgggcatttatcccgctg 1248
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 23661649 atttggatgctaccactgtgctgtcccgtgctattgctgagctgggcatttatcccgctg 23661590
Query: 1249 tggatcctctggactctacttctcgaatcatggatcccaacattgttggcagtgagcatt 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23661589 tggatcctctggactctacttctcgaatcatggatcccaacattgttggcagtgagcatt 23661530
Query: 1309 atgatgttgcccgtggagtgcaaaagatcctacagg 1344
||||||||||||||||||||||||||||||||||||
Sbjct: 23661529 atgatgttgcccgtggagtgcaaaagatcctacagg 23661494
Score = 408 bits (206), Expect = e-111
Identities = 209/210 (99%)
Strand = Plus / Minus
Query: 1340 acaggactacaaatccctccaagatatcattgccatcctgggcatggatgaactttctga 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23661102 acaggactacaaatccctccaagatatcattgccatcctgggcatggatgaactttctga 23661043
Query: 1400 ggaagacaagttaactgtgtcccgtgcacggaaaatacagcgtttcctgtctcagccatt 1459
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 23661042 ggaagacaagttaactgtatcccgtgcacggaaaatacagcgtttcctgtctcagccatt 23660983
Query: 1460 ccaggttgctgaggtctttacaggtcacttggggaagttggtacccctgaaggagaccat 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23660982 ccaggttgctgaggtctttacaggtcacttggggaagttggtacccctgaaggagaccat 23660923
Query: 1520 caaaggattccagcagattttggcaggtga 1549
||||||||||||||||||||||||||||||
Sbjct: 23660922 caaaggattccagcagattttggcaggtga 23660893
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Minus
Query: 663 gggctctttggtggtgctggagttggcaagacagtactgatcatggagttaatcaacaac 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23664611 gggctctttggtggtgctggagttggcaagacagtactgatcatggagttaatcaacaac 23664552
Query: 723 gtagccaaagctcatggtggttactccgtgtttgctggtgttggcgaaaggacccgtgag 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23664551 gtagccaaagctcatggtggttactccgtgtttgctggtgttggcgaaaggacccgtgag 23664492
Query: 783 ggcaatgacttataccatgaaatgattgagtctggtgtcatcaacttaaaagatgctacc 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23664491 ggcaatgacttataccatgaaatgattgagtctggtgtcatcaacttaaaagatgctacc 23664432
Query: 843 tctaaggt 850
||||||||
Sbjct: 23664431 tctaaggt 23664424
Score = 369 bits (186), Expect = 4e-99
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 183 gccagagactatgccactcaaccatctccatcgccaaaggcaggcgccgccactgggcga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23666102 gccagagactatgccactcaaccatctccatcgccaaaggcaggcgccgccactgggcga 23666043
Query: 243 atcgtggcagtcattggtgcagtggtggatgtccagtttgatgaaggactgccacccatc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23666042 atcgtggcagtcattggtgcagtggtggatgtccagtttgatgaaggactgccacccatc 23665983
Query: 303 ctaaatgccctggaagtgcaaggcagggagaccaggctggttttggaggtggcccagcat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23665982 ctaaatgccctggaagtgcaaggcagggagaccaggctggttttggaggtggcccagcat 23665923
Query: 363 ttgggt 368
||||||
Sbjct: 23665922 ttgggt 23665917
Score = 353 bits (178), Expect = 2e-94
Identities = 181/182 (99%)
Strand = Plus / Minus
Query: 2 gcggggagttggcggccagactgctgcagcgctgagtctctacccgggctccgccatgtt 61
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 23666731 gcggggagttggcggccagactgctgcagcgctcagtctctacccgggctccgccatgtt 23666672
Query: 62 gggctttgtgggtcgtgtggcctctgcctcggcctctggggccttgcggggactcagccc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23666671 gggctttgtgggtcgtgtggcctctgcctcggcctctggggccttgcggggactcagccc 23666612
Query: 122 ttcagcgccgctaccccaagcccagctcttactgcgggccgctccggcagcgctccagcc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23666611 ttcagcgccgctaccccaagcccagctcttactgcgggccgctccggcagcgctccagcc 23666552
Query: 182 tg 183
||
Sbjct: 23666551 tg 23666550
Score = 349 bits (176), Expect = 3e-93
Identities = 176/176 (100%)
Strand = Plus / Minus
Query: 366 ggtgagagtactgtaaggaccattgccatggatggtacagaaggcctggttagaggccag 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23665681 ggtgagagtactgtaaggaccattgccatggatggtacagaaggcctggttagaggccag 23665622
Query: 426 aaagtcctagattctggtgcaccaatcaaaattcctgttgggcctgagaccttgggcaga 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23665621 aaagtcctagattctggtgcaccaatcaaaattcctgttgggcctgagaccttgggcaga 23665562
Query: 486 atcatgaatgtcattggagaacctattgatgagagaggtcccatcaaaaccaaaca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23665561 atcatgaatgtcattggagaacctattgatgagagaggtcccatcaaaaccaaaca 23665506
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 847 aggtagcgctggtgtacggtcaaatgaatgaacctccgggtgctcgggcccgggtagctc 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23663889 aggtagcgctggtgtacggtcaaatgaatgaacctccgggtgctcgggcccgggtagctc 23663830
Query: 907 tgactggactgactgtagctgaatacttcagagaccaagagggtcaagatgtactgctgt 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23663829 tgactggactgactgtagctgaatacttcagagaccaagagggtcaagatgtactgctgt 23663770
Query: 967 ttattgataacatctttcgcttcacccaggctggctcagaagt 1009
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23663769 ttattgataacatctttcgcttcacccaggctggctcagaagt 23663727
Score = 246 bits (124), Expect = 4e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 1008 gtgtctgctttattgggcagaatcccttctgcggtgggttatcagcctaccctggccact 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23663642 gtgtctgctttattgggcagaatcccttctgcggtgggttatcagcctaccctggccact 23663583
Query: 1068 gacatgggtaccatgcaggaaagaatcaccaccaccaaaaagggatctatcacctctgta 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23663582 gacatgggtaccatgcaggaaagaatcaccaccaccaaaaagggatctatcacctctgta 23663523
Query: 1128 cagg 1131
||||
Sbjct: 23663522 cagg 23663519
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 542 atttgctgctattcatgctgaggctcctgaattcatggagatgagtgttgagcaggaaat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23665003 atttgctgctattcatgctgaggctcctgaattcatggagatgagtgttgagcaggaaat 23664944
Query: 602 tctggttaccggtatcaaggttgtggatctactggctccctatgccaagggtggcaaaat 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23664943 tctggttaccggtatcaaggttgtggatctactggctccctatgccaagggtggcaaaat 23664884
Query: 662 tgg 664
|||
Sbjct: 23664883 tgg 23664881
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,669,276
Number of extensions: 236
Number of successful extensions: 236
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 12
Length of query: 1837
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1815
Effective length of database: 2,808,408,574
Effective search space: 5097261561810
Effective search space used: 5097261561810
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)