Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012519
(1027 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544929.2| PREDICTED: similar to keratin associated protei... 65 8e-11
Alignment gi|XP_538245.2| PREDICTED: similar to Low-density lipoprotein r... 61 2e-09
Alignment gi|XP_546739.2| PREDICTED: similar to EGF-like-domain, multiple... 60 3e-09
Alignment gi|XP_531893.2| PREDICTED: similar to MEGF10 protein [Canis fam... 58 1e-08
Alignment gi|NP_001182078.1| tenascin [Canis lupus familiaris]. 57 3e-08
Alignment gi|XP_534452.2| PREDICTED: similar to Protein KIAA1404 [Canis f... 56 6e-08
Alignment gi|XP_535946.2| PREDICTED: similar to Low-density lipoprotein r... 52 7e-07
Alignment gi|XP_546704.2| PREDICTED: similar to low density lipoprotein r... 52 7e-07
Alignment gi|XP_533538.2| PREDICTED: similar to Very low-density lipoprot... 52 7e-07
Alignment gi|XP_865155.1| PREDICTED: similar to odd Oz/ten-m homolog 1 is... 52 1e-06
>ref|XP_544929.2| PREDICTED: similar to keratin associated protein 10-8 [Canis
familiaris].
Length = 328
Score = 65.5 bits (158), Expect = 8e-11
Identities = 71/283 (25%), Positives = 91/283 (32%), Gaps = 18/283 (6%)
Frame = +1
Query: 133 CKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGH----QCVRKGCGHVC 300
C D CG GR C+ + C S + + C+ C E C C CG
Sbjct: 20 CSSDLSCG-GRLCSPSAC---TSSSWQVDDCQETCCEPPCCAPASCLTLLCTPASCGS-- 73
Query: 301 APVHQVDVGICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQ 480
+P G C C C EG C + C C PV C C + C S
Sbjct: 74 SPCPPACPGSCQPSCGSCSPCQEG--CGVSVC---CKPV----CCTPVCCKPLCCESSPC 124
Query: 481 CVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRREGCEHQCRE 660
C + C C G CV+ C C +C C ++ C+ C
Sbjct: 125 CQQSSCQPSCCNSSPCQEGCCVSVCCKPVCCTP--VCCKPLCCESSPCCQQSSCQPSCCN 182
Query: 661 DRDCGSGHQCVRKGCGHVC-------------APVHQVGICVTECNVDQDCGEGRQCTSN 801
C G CV C VC +P Q C C C EG C S
Sbjct: 183 SSPCQEGC-CVSVCCKPVCCTPVCCKPLCCEASPCCQQSSCQPSCGSCSPCQEGC-CMSV 240
Query: 802 GCGRVC-SPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVC 927
C VC +PV + +C + C C + C VC
Sbjct: 241 CCKPVCCTPVCCKPSSLCCQQSSCQPSCCSSSPCQEDSCVSVC 283
>ref|XP_538245.2| PREDICTED: similar to Low-density lipoprotein receptor-related
protein 1 precursor (LRP) (Alpha-2-macroglobulin
receptor) (A2MR) (Apolipoprotein E receptor) (APOER)
(CD91) [Canis familiaris].
Length = 4526
Score = 60.8 bits (146), Expect = 2e-09
Identities = 82/333 (24%), Positives = 111/333 (33%), Gaps = 45/333 (13%)
Frame = +1
Query: 115 GICVTE---CKVDQDCGAGR---RCTSNGC---GRVCSPIRRREACEHQCREDRDCGSGH 267
GIC C D DC C + C C+ R +C +CG G
Sbjct: 3366 GICTNPAFICDGDNDCQDNSDEANCDIHVCLPSQFKCTNTNRCIPGIFRCNGQDNCGDGE 3425
Query: 268 QCVRKGCGHVCAPVHQVDVGIC------VMECRVDQDCGEGR----LCISNGCGRVCFPV 417
+ C V +Q I V C D DC +G C CG F
Sbjct: 3426 D--ERDCPEVTCAPNQFQCSITKRCIPRVWVCDRDNDCVDGSDEPANCTQMTCGVDEFRC 3483
Query: 418 RRREAC---EHQCREDRDCGSGHQCVRKGCGH-VCAPVH-QVDVGICVT---ECRVDQDC 573
+ C +C + DCG G ++ C C P + CV +C D DC
Sbjct: 3484 KDSGRCIPARWKCDGEDDCGDGSDEPKEECDERTCEPYQFRCKNNRCVPGRWQCDYDNDC 3543
Query: 574 GEG---RLCISNGCGRV---CFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVH-- 729
G+ C C C GR +C D DC G K C C
Sbjct: 3544 GDNSDEESCTPRPCSESEFSCANGRCIAGRWKCDGDHDCADGSD--EKDCTPRCDMDQFQ 3601
Query: 730 -QVGICVT---ECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVG--IC---VTECKVDQDC 882
+ G C+ C+ D DC +G + G G P+ + +C +C + DC
Sbjct: 3602 CKSGHCIPLRWRCDADADCMDGSDEEACGTGVRTCPLDEFQCNNTLCKPLAWKCDGEDDC 3661
Query: 883 GEGRRCTSNGCGR-VCSPVQQKEACELQCKEDR 978
G+ C R VC P + +CK DR
Sbjct: 3662 GDNSDENPEECARFVCPPNR-----PFRCKNDR 3689
Score = 51.2 bits (121), Expect = 2e-06
Identities = 84/345 (24%), Positives = 110/345 (31%), Gaps = 71/345 (20%)
Frame = +1
Query: 109 DVGICVT---ECKVDQDCGAGRRCTSNGCG-RVCSPIRRREACEH--------QCREDRD 252
D G C+ +C + DCG G C R C P + R C++ QC D D
Sbjct: 3485 DSGRCIPARWKCDGEDDCGDGSDEPKEECDERTCEPYQFR--CKNNRCVPGRWQCDYDND 3542
Query: 253 CGSG---HQCVRKGCGHV---CAPVHQVDVGICVM---ECRVDQDCGEGR---------- 375
CG C + C CA G C+ +C D DC +G
Sbjct: 3543 CGDNSDEESCTPRPCSESEFSCAN------GRCIAGRWKCDGDHDCADGSDEKDCTPRCD 3596
Query: 376 ----LCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVG-- 537
C S C P+R R C D DC G G G P+ +
Sbjct: 3597 MDQFQCKSGHC----IPLRWR------CDADADCMDGSDEEACGTGVRTCPLDEFQCNNT 3646
Query: 538 IC---VTECRVDQDCGEGRLCISNGCGR-VCFPGRREGCEHQCREDRDC-GSGHQCV-RK 699
+C +C + DCG+ C R VC P R +C+ DR C G QC
Sbjct: 3647 LCKPLAWKCDGEDDCGDNSDENPEECARFVCPPNR----PFRCKNDRVCLWIGRQCDGTD 3702
Query: 700 GCGHVC------APVHQVGICVTE----------------CNVDQDCGEGRQCTSNGCGR 813
CG P Q C + CN+ DCG+G
Sbjct: 3703 NCGDGTDEEDCEPPTAQTPHCKDKKEFLCRNQRCLSSSLRCNMFDDCGDGS--------- 3753
Query: 814 VCSPVQQEDVGI------CVTECKVDQDCGEGRRCTSNGCGRVCS 930
+ED I C T + CG+ RC C+
Sbjct: 3754 -----DEEDCSIDPKLTSCATNASI---CGDEARCVRTEKAAYCA 3790
>ref|XP_546739.2| PREDICTED: similar to EGF-like-domain, multiple 3 [Canis familiaris].
Length = 1534
Score = 60.1 bits (144), Expect = 3e-09
Identities = 88/350 (25%), Positives = 115/350 (32%), Gaps = 61/350 (17%)
Frame = +1
Query: 100 QAVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVR 279
+A G +C+ DC AG C S +C R+ C+ C GH C +
Sbjct: 911 RACPAGFFGLDCRGVCDCAAGAPCDSVSGSCLCPAGRQGPRCDQACPAHT---YGHNCSQ 967
Query: 280 K-GC--GHVCAPVH-QVDVG------ICVMEC---RVDQDCGEGRLCISNG--------- 393
C G C PVH Q G C+ C Q+C LC G
Sbjct: 968 TCSCFNGASCDPVHGQCHCGPGWMGSTCLEACPTGSYGQNCQHTCLCQHGGTCDPVSGHC 1027
Query: 394 ----------CGRVCFPVRRREACEHQCREDRDCGSGHQCVRKG-------------CGH 504
C C P R C+H CR C +G C R+ C
Sbjct: 1028 TCPEGWTGLACEEECLPGRFGAGCKHSCR----CLNGGDCDRRSGRCLCPAGWTGDQCQS 1083
Query: 505 VCAPVHQVDVGICVTECRVDQDCGEGRLC--ISNGCGRVCFPG-RREGCEHQCREDRDCG 675
+CA G C C G C ++ C +C PG R CE+ C
Sbjct: 1084 LCAE------GTFGVRCEEHCACRRGATCHHVTGAC--LCPPGWRGSRCENACPHG---W 1132
Query: 676 SGHQCVRK-GCGHVCAPVHQVGIC-----VTECNVDQDC-----GE--GRQCTSNGCGRV 816
G C ++ C A H G C T +Q C GE G++C G +
Sbjct: 1133 FGEACAQRCQCPPGAACHHVTGECRCPRGFTGPGCEQACPPGTFGESCGQKCHCPGENQA 1192
Query: 817 CSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQC 966
C P +G CV C G +GC + C P + CE C
Sbjct: 1193 CHPA----LGTCV--------CAAGYH--GSGCRQRCPPGRFGPGCEQPC 1228
Score = 57.4 bits (137), Expect = 2e-08
Identities = 76/293 (25%), Positives = 93/293 (31%), Gaps = 20/293 (6%)
Frame = +1
Query: 151 CGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGI 330
C T C R C R C H C C GH C V G+
Sbjct: 811 CSCAPGWTGLSCQRACDGGRWGPDCSHPC----TCSPGH----GSCDAVS--------GL 854
Query: 331 CVMEC-----RVDQDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCVRKG 495
CV E R +Q C +G GCGR C CEH D G+ C
Sbjct: 855 CVCEAGYTGPRCEQRCPQGH--FGPGCGRQC-------QCEHGAACDHVSGA-CTCPAGW 904
Query: 496 CGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRR-----EGCE----- 645
G +C G +CR DC G C S +C GR+ + C
Sbjct: 905 RGALCE--RACPAGFFGLDCRGVCDCAAGAPCDSVSGSCLCPAGRQGPRCDQACPAHTYG 962
Query: 646 HQCREDRDCGSGHQC--VRKGCGHVCAPVHQVGICVTEC---NVDQDCGEGRQCTSNGCG 810
H C + C +G C V C C P C+ C + Q+C C G
Sbjct: 963 HNCSQTCSCFNGASCDPVHGQCH--CGPGWMGSTCLEACPTGSYGQNCQHTCLCQHGG-- 1018
Query: 811 RVCSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQCK 969
C PV G C C EG T C C P + C+ C+
Sbjct: 1019 -TCDPVS----GHCT--------CPEG--WTGLACEEECLPGRFGAGCKHSCR 1056
Score = 55.1 bits (131), Expect = 1e-07
Identities = 71/303 (23%), Positives = 99/303 (32%), Gaps = 28/303 (9%)
Frame = +1
Query: 151 CGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVC-APVHQVDVG 327
C AG +GC + C P R CE C C +G C +C A D
Sbjct: 1202 CAAGYH--GSGCRQRCPPGRFGPGCEQPC----GCLNGGSCDAATGACLCPAGFLGADCS 1255
Query: 328 ICVME------CRVDQDCGEGRLC--ISNGCGRVCFPVRRREACEHQCREDRDCGSGHQC 483
+ + C CG+ C ++ C C P CEH C ++R
Sbjct: 1256 LSCPQGHFGPGCAHVCGCGQAVTCDPVTGSCA--CPPGTTGTHCEHGCPQNR-------- 1305
Query: 484 VRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRR-EGCEHQCRE 660
C HVC+ + G+C D C G C + C PG C +C
Sbjct: 1306 FGVNCEHVCSCRNG---GLCHAS---DGSCSCGLGWTGPNCEQACPPGHYGAACRLECSC 1359
Query: 661 DRD---------CGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQC--TSNGC 807
+ C G + C H C P C C +C G C S C
Sbjct: 1360 QNNGTCEPTTGACRCGPGFYGQACQHACPPGFHGAGCRAAC----ECQHGASCDPVSGQC 1415
Query: 808 -------GRVCSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQC 966
G++C + + G C+ DC G C +C P + C+L C
Sbjct: 1416 VCPAGFYGQLCE--KGCEPGSFGEGCREHCDCEMGAACDPITGQCLCPPGRTGATCDLDC 1473
Query: 967 KED 975
+ D
Sbjct: 1474 RPD 1476
Score = 53.9 bits (128), Expect = 2e-07
Identities = 77/303 (25%), Positives = 90/303 (29%), Gaps = 24/303 (7%)
Frame = +1
Query: 115 GICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQC---------REDRDCGSGH 267
G VT V C T C C R CEH C D C G
Sbjct: 1274 GQAVTCDPVTGSCACPPGTTGTHCEHGCPQNRFGVNCEHVCSCRNGGLCHASDGSCSCGL 1333
Query: 268 QCVRKGCGHVCAPVHQVDVGICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQC 447
C C P H C +EC C +NG C P AC
Sbjct: 1334 GWTGPNCEQACPPGHY--GAACRLECS----------CQNNG---TCEPT--TGACR--- 1373
Query: 448 REDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLC--ISNGC----- 606
CG G + C H C P G CR +C G C +S C
Sbjct: 1374 -----CGPGF--YGQACQHACPP------GFHGAGCRAACECQHGASCDPVSGQCVCPAG 1420
Query: 607 --GRVCFPGRREGCE-----HQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVD 765
G++C +GCE CRE DC G C +C P C +C D
Sbjct: 1421 FYGQLC----EKGCEPGSFGEGCREHCDCEMGAACDPITGQCLCPPGRTGATCDLDCRPD 1476
Query: 766 -QDCGEGRQCTSNGCGRVCSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQ 942
G +C+ G G C PV G C RC G C V
Sbjct: 1477 FFGPGCALRCSCGG-GAACDPVS----GQC--------------RCVDGYMGPTCQQVAS 1517
Query: 943 KEA 951
+ A
Sbjct: 1518 QPA 1520
Score = 53.5 bits (127), Expect = 3e-07
Identities = 84/365 (23%), Positives = 106/365 (29%), Gaps = 89/365 (24%)
Frame = +1
Query: 139 VDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKG----------- 285
V C T C C P R C+H CR C +G C R+
Sbjct: 1023 VSGHCTCPEGWTGLACEEECLPGRFGAGCKHSCR----CLNGGDCDRRSGRCLCPAGWTG 1078
Query: 286 --CGHVCAPVHQVDVGICVMECRVDQDCGEGRLC--ISNGCGRVCFPVRRREACEHQC-- 447
C +CA G + C C G C ++ C +C P R CE+ C
Sbjct: 1079 DQCQSLCAE------GTFGVRCEEHCACRRGATCHHVTGAC--LCPPGWRGSRCENACPH 1130
Query: 448 -------REDRDCGSGHQC-------------VRKGCGHVCAPVHQVDVGICVTECRVDQ 567
+ C G C GC C P G C
Sbjct: 1131 GWFGEACAQRCQCPPGAACHHVTGECRCPRGFTGPGCEQACPP------GTFGESCGQKC 1184
Query: 568 DC-GEGRLCI-------------SNGCGRVCFPGR-REGCEHQCREDRDCGSGHQC---- 690
C GE + C +GC + C PGR GCE C C +G C
Sbjct: 1185 HCPGENQACHPALGTCVCAAGYHGSGCRQRCPPGRFGPGCEQPC----GCLNGGSCDAAT 1240
Query: 691 ----------------------VRKGCGHVCAPVHQV------GICV-----TECNVDQD 771
GC HVC V G C T + +
Sbjct: 1241 GACLCPAGFLGADCSLSCPQGHFGPGCAHVCGCGQAVTCDPVTGSCACPPGTTGTHCEHG 1300
Query: 772 CGEGRQCTSNGCGRVCSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEA 951
C + R + C VCS + G+C D C G T C + C P A
Sbjct: 1301 CPQNRFGVN--CEHVCSC---RNGGLCHAS---DGSCSCGLGWTGPNCEQACPPGHYGAA 1352
Query: 952 CELQC 966
C L+C
Sbjct: 1353 CRLEC 1357
>ref|XP_531893.2| PREDICTED: similar to MEGF10 protein [Canis familiaris].
Length = 1548
Score = 58.2 bits (139), Expect = 1e-08
Identities = 72/309 (23%), Positives = 98/309 (31%), Gaps = 31/309 (10%)
Frame = +1
Query: 133 CKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDR---------DCGSGHQCVRKG 285
C + C G C + C+P R + CE C++ DC C
Sbjct: 906 CNLTCQCLHGGACNTQDGTCTCAPGWRGDKCELPCQDGTYGLNCAERCDCSHADGC-HST 964
Query: 286 CGHV-CAP----VHQVDV---GICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEH 441
GH C P VH V G C + C G C + C P R C+
Sbjct: 965 TGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 1024
Query: 442 QCREDRDCGSGHQCVRK--GCGHVCAPVHQVDVGIC-----VTECRVDQDCGEGRLCISN 600
C GH+C + C H P H + G+C T ++ C GR
Sbjct: 1025 ICSPGF---YGHRCSQTCPQCVHSSGPCHHI-TGLCDCLPGFTGALCNEVCPSGRF--GK 1078
Query: 601 GCGRVCFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGE 780
C VC C DR C + C C P H C+ CN C
Sbjct: 1079 NCAGVCTCTNNGTCNPI---DRSCQCYPGWIGSDCSQPCPPAHWGPNCIHTCN----CHN 1131
Query: 781 GRQCTSNGCGRVCSP-------VQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQ 939
G C++ C+P Q+ +G +C + C G C C
Sbjct: 1132 GAFCSAYDGECKCTPGWTGLYCTQRCPLGFYGKDCALICQCQNGADCDHISGQCTCRTGF 1191
Query: 940 QKEACELQC 966
+ CE +C
Sbjct: 1192 MGKHCEQKC 1200
Score = 49.7 bits (117), Expect = 5e-06
Identities = 70/279 (25%), Positives = 91/279 (32%), Gaps = 16/279 (5%)
Frame = +1
Query: 184 CGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVMECRVDQDC 363
C CSP EAC+ C C +G C +CAP G ++C +
Sbjct: 807 CNETCSPGFFGEACQQIC----SCHNGADCDSVTGKCICAP------GFKGIDCSIPCPL 856
Query: 364 GEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGS-GHQCVRKGCGHVCAPVHQVDVGI 540
+ S+ CG C+ D C C K H G
Sbjct: 857 ETYGINCSSLCG---------------CKNDAVCSPVDGSCTCKAGWHGVDCSISCPSGT 901
Query: 541 CVTECRVDQDCGEGRLCISNGCGRVCFPG-RREGCEHQCREDRDCGSGHQCVRK-GCGHV 714
C + C G C + C PG R + CE C+ D G C + C H
Sbjct: 902 WGFSCNLTCQCLHGGACNTQDGTCTCAPGWRGDKCELPCQ---DGTYGLNCAERCDCSHA 958
Query: 715 CAPVHQVGICV-----TECNVDQDCGEGR---QCT-----SNGCGRVCSPVQQEDVGICV 855
G C + + D C EGR C+ NG CSP D GIC
Sbjct: 959 DGCHSTTGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGAS--CSP----DDGIC- 1011
Query: 856 TECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQCKE 972
+C G R T+ C R+CSP C C +
Sbjct: 1012 -------ECAPGFRGTT--CQRICSPGFYGHRCSQTCPQ 1041
>ref|NP_001182078.1| tenascin [Canis lupus familiaris].
Length = 2201
Score = 57.0 bits (136), Expect = 3e-08
Identities = 87/328 (26%), Positives = 114/328 (34%), Gaps = 53/328 (16%)
Frame = +1
Query: 151 CGAGRRCTSNGCGRVCSPIRRREACEH-----------QCREDR---DCG-SGHQCVRKG 285
C ++ GCG VC P + C QC + + D G +G C +
Sbjct: 161 CSGRGNFSTEGCGCVCEPGWKGPNCSEPECPGNCHLRGQCLDGQCVCDEGFTGEDCSQLA 220
Query: 286 CGHVCAPVHQVDVGICV-MECRVDQDCG----------------EGR-LCISNGCGRVCF 411
C C + G+CV E DCG EGR +C G C
Sbjct: 221 CPSDCNDQGKCVSGVCVCFEGYTGADCGDEVCPVPCNEEHGRCVEGRCVCQDGFAGEDCS 280
Query: 412 PVRRREACEHQCR-EDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVT-ECRVDQ-----D 570
+C ++ R + +C + C + P D G CV C +Q D
Sbjct: 281 EPLCLNSCHNRGRCVENECVCDEGFTGEDCSELICPNDCFDRGRCVNGTCYCEQGFSGED 340
Query: 571 CGEGRLCISNGC-GRVCFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICV 747
CG+ L N C GR GR E + C +G C + C + C H G CV
Sbjct: 341 CGQ--LSCPNACTGR----GRCEQGQCVCEPG---FAGPDCSDRSCPNDC---HHRGRCV 388
Query: 748 -TECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICV-TECKVDQDCGEGR--------- 894
C D G G C C R CS G CV E +DCG+ R
Sbjct: 389 HGRCECDAGFG-GPDCGQLQCPRGCSGHGHCVNGQCVCDEGHTGEDCGQLRCPNDCHSRG 447
Query: 895 RCTSNGCGRVCSPVQQKEAC-ELQCKED 975
RC C VC P Q C ++ C D
Sbjct: 448 RCVQGQC--VCEPGFQGYDCSDMSCPND 473
Score = 56.2 bits (134), Expect = 5e-08
Identities = 89/330 (26%), Positives = 113/330 (34%), Gaps = 43/330 (13%)
Frame = +1
Query: 115 GICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGH 294
G CV V QD AG C+ C C R E++C D +G C C +
Sbjct: 261 GRCVEGRCVCQDGFAGEDCSEPLCLNSCH--NRGRCVENECVCDEGF-TGEDCSELICPN 317
Query: 295 VCAPVHQVDVGICVMECRVD-QDCGEGRLCISNGC---GR------VCFPVRRREAC-EH 441
C + G C E +DCG+ L N C GR VC P C +
Sbjct: 318 DCFDRGRCVNGTCYCEQGFSGEDCGQ--LSCPNACTGRGRCEQGQCVCEPGFAGPDCSDR 375
Query: 442 QCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTEC---RVDQDCGEGRLCISNGCGR 612
C DC +CV C + D G +C + + C C++ C
Sbjct: 376 SC--PNDCHHRGRCVHGRC--------ECDAGFGGPDCGQLQCPRGCSGHGHCVNGQC-- 423
Query: 613 VCFPGRREGCEHQCREDRDCGSGHQCVRKGC-------GHVCAPV------HQVGICVTE 753
VC G Q R DC S +CV+ C G+ C+ + HQ G CV
Sbjct: 424 VCDEGHTGEDCGQLRCPNDCHSRGRCVQGQCVCEPGFQGYDCSDMSCPNDCHQHGRCVNG 483
Query: 754 CNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICVT---ECK------------VDQDCGE 888
V D G C C R CS D G CV EC+ DC
Sbjct: 484 MCVCDDGYTGEDCRDLRCPRDCS-----DRGRCVAGRCECEHGFTGPDCADLACPADCHG 538
Query: 889 GRRCTSNGCGRVCSPVQQKEAC-ELQCKED 975
RC + C VC C E +C D
Sbjct: 539 QGRCVNGQC--VCHEGFTGATCQERRCPGD 566
>ref|XP_534452.2| PREDICTED: similar to Protein KIAA1404 [Canis familiaris].
Length = 1928
Score = 55.8 bits (133), Expect = 6e-08
Identities = 72/282 (25%), Positives = 92/282 (32%), Gaps = 52/282 (18%)
Frame = +1
Query: 277 RKGCGHVCA-PVHQVDVG-----------------------ICVMECRVDQ--------D 360
R GCGHVC H D +C EC+ Q
Sbjct: 1306 RLGCGHVCTRACHPYDSSHKEFQCMKPCQKVICQDGHRCPLVCFQECQPCQVKVRKIIVR 1365
Query: 361 CG----------EGRLCISNGCGRVCFPVRRREACEHQCRED--RDCGSGHQCVRKGCGH 504
CG E C C +V ++ C H C ED R C S V+ CGH
Sbjct: 1366 CGHEQMVPCSMPESDFCCQEPCPKV---LKCGHRCSHPCGEDCVRLC-SEMVTVKLKCGH 1421
Query: 505 ----VCAPVHQVDVGI---CVTECRVDQDCGEGRLCISNGCGRVCFPGR-REGCEHQCRE 660
C V + + C T+C DCG G CF GR E C+ C+
Sbjct: 1422 SQQVKCGNVEDLMYDLPVKCTTKCGTILDCGHP----CPGTCHSCFEGRFHERCQQPCKR 1477
Query: 661 DRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQED 840
C H+C ++ C C P + C C V C CG +CSP
Sbjct: 1478 LLIC--SHKC-QEPCIRECPPCQRT--CQNRC-VHSQC-------KKKCGELCSP----- 1519
Query: 841 VGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQC 966
CV C RC C ++CS + C + C
Sbjct: 1520 ---CVEPCV--------WRCQHYQCTKLCSEPCNRPPCYVPC 1550
>ref|XP_535946.2| PREDICTED: similar to Low-density lipoprotein receptor-related
protein 2 precursor (Megalin) (Glycoprotein 330) (gp330)
[Canis familiaris].
Length = 4646
Score = 52.4 bits (124), Expect = 7e-07
Identities = 73/280 (26%), Positives = 95/280 (33%), Gaps = 52/280 (18%)
Frame = +1
Query: 232 QCREDRDCGSGHQCVRKGCG-HVCAP-VHQVDVGICVM---ECRVDQDCGEG---RLCIS 387
+C D DCG G + C H C P G CV C DCG+ C+
Sbjct: 2714 KCDNDNDCGDGSDELESVCAFHTCQPTAFTCANGRCVQYHYRCDHYNDCGDNSDEAGCLF 2773
Query: 388 NGC-GRVCFPVRRREACEHQ--CREDRDCGSGHQCVRKGCG-HVCAP--VHQVDVGICVT 549
C V F R Q C +C K C C P V IC+
Sbjct: 2774 RECNATVEFTCSNRRCIPLQFVCNGINNCHDNDTSDEKNCSDRTCQPGYVKCQTTNICIP 2833
Query: 550 E---CRVDQDCGEGR-----LCISNGCGRVCFP---GRREGCEHQCREDRDC--GSGHQC 690
C D DCG+ C S+ C FP GR C E+ DC GS
Sbjct: 2834 HFYLCDEDNDCGDMSDESPVFCASHTCSSDEFPCTSGRCIPKHWYCDEEGDCPDGSDEPA 2893
Query: 691 VRKGCGHVCAPVH---QVGICVTE---CNVDQDCG------EGRQCTSNGCGR---VCS- 822
+ C G C+ E C+ D DCG E C ++ C +C+
Sbjct: 2894 TCEYLEATCLSSEFKCDSGRCIREEWICDGDNDCGDMSDEDERHHCGNHNCSSSEFLCAN 2953
Query: 823 --PVQQEDVGICVTE---CKVDQDCGEG----RRCTSNGC 915
P ++ C+ + C D DC +G + CT C
Sbjct: 2954 NVPPSRK----CIPKSWVCDGDADCTDGYDEHQNCTRRSC 2989
Score = 51.6 bits (122), Expect = 1e-06
Identities = 83/334 (24%), Positives = 111/334 (33%), Gaps = 67/334 (20%)
Frame = +1
Query: 115 GICVTE---CKVDQDCGAGRRCTSNGCG-RVCSPIR------RREACEHQCREDRDCGSG 264
G C+ E C D DCG G + C C P R ++C DCG
Sbjct: 2706 GHCILEQWKCDNDNDCGDGSDELESVCAFHTCQPTAFTCANGRCVQYHYRCDHYNDCGDN 2765
Query: 265 HQ---CVRKGCGHV---------CAPVHQVDVGICVMECRVDQDCGEGRLCISNGCGRVC 408
C+ + C C P+ V GI C D D + + C C
Sbjct: 2766 SDEAGCLFRECNATVEFTCSNRRCIPLQFVCNGI--NNCH-DNDTSDEKNCSDRTCQPGY 2822
Query: 409 FPVRRREACE---HQCREDRDCGSGHQCVRKGCG-HVCAPVH-QVDVGICVTE---CRVD 564
+ C + C ED DCG C H C+ G C+ + C +
Sbjct: 2823 VKCQTTNICIPHFYLCDEDNDCGDMSDESPVFCASHTCSSDEFPCTSGRCIPKHWYCDEE 2882
Query: 565 QDCGEGR-----------LCISNGCGRVCFPGRREGCEHQCREDRDCGS------GHQCV 693
DC +G C+S+ C GR E C D DCG H C
Sbjct: 2883 GDCPDGSDEPATCEYLEATCLSSEFK--CDSGRCIREEWICDGDNDCGDMSDEDERHHCG 2940
Query: 694 RKGCGH---VCAP-VHQVGICVTE---CNVDQDCGEG----RQCTSNGCGR---VCSPVQ 831
C +CA V C+ + C+ D DC +G + CT C CS
Sbjct: 2941 NHNCSSSEFLCANNVPPSRKCIPKSWVCDGDADCTDGYDEHQNCTRRSCSGNDFTCSN-- 2998
Query: 832 QEDVGICVT---ECKVDQDCG---EGRRCTSNGC 915
G+CV C DCG + R C+ + C
Sbjct: 2999 ----GLCVPHSYRCDRRNDCGDYSDERNCSYSTC 3028
Score = 49.7 bits (117), Expect = 5e-06
Identities = 75/320 (23%), Positives = 108/320 (33%), Gaps = 53/320 (16%)
Frame = +1
Query: 115 GICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRD---CGSGHQCVRKG 285
GI V Q C + GC +C+P C QC + + C+
Sbjct: 2635 GIRVVVKNQQQQCSNPCSEFNGGCSHICAPGPNGAEC--QCPHEGHWYLANNKKHCIVDN 2692
Query: 286 CGHVCAPVHQVDVGICVME---CRVDQDCGEG-----RLCISNGCGRVCFPVRRREACE- 438
+ G C++E C D DCG+G +C + C F +
Sbjct: 2693 GTRCDSSKFTCLNGHCILEQWKCDNDNDCGDGSDELESVCAFHTCQPTAFTCANGRCVQY 2752
Query: 439 -HQCREDRDCGSGHQ---CVRKGCGHV---------CAPVHQVDVGICVTECRVDQDCGE 579
++C DCG C+ + C C P+ V GI C D D +
Sbjct: 2753 HYRCDHYNDCGDNSDEAGCLFRECNATVEFTCSNRRCIPLQFVCNGI--NNCH-DNDTSD 2809
Query: 580 GRLCISNGCGRVCFPGRREGCE---------HQCREDRDCGSGHQCVRKGC-GHVCAPVH 729
+ C R C PG + C+ + C ED DCG C H C+
Sbjct: 2810 EKNC----SDRTCQPGYVK-CQTTNICIPHFYLCDEDNDCGDMSDESPVFCASHTCSSDE 2864
Query: 730 ---QVGICVTE---CNVDQDCGEG--RQCTSNGCGRVC-SPVQQEDVGICVTE---CKVD 873
G C+ + C+ + DC +G T C S + D G C+ E C D
Sbjct: 2865 FPCTSGRCIPKHWYCDEEGDCPDGSDEPATCEYLEATCLSSEFKCDSGRCIREEWICDGD 2924
Query: 874 QDCG------EGRRCTSNGC 915
DCG E C ++ C
Sbjct: 2925 NDCGDMSDEDERHHCGNHNC 2944
>ref|XP_546704.2| PREDICTED: similar to low density lipoprotein receptor-related
protein 8 [Canis familiaris].
Length = 1149
Score = 52.4 bits (124), Expect = 7e-07
Identities = 80/346 (23%), Positives = 120/346 (34%), Gaps = 65/346 (18%)
Frame = +1
Query: 115 GICVTE---CKVDQDCGAGR-----RCTSNGCGRV---CSPIRRR-EACEHQCREDRDCG 258
G C+ E C +++C G CT C C P + +C ++DC
Sbjct: 246 GHCIPERWKCDGEEECPDGSDESEATCTKQVCPAEKLSCGPASHKCVPASWRCDGEKDCE 305
Query: 259 SGHQCVRKGCGHVCAPVHQVDVG-----ICVMECRVDQDCGEG---RLCISNGC------ 396
SG GC +CAP H+ V C D DCG+G R C C
Sbjct: 306 SGAD--EAGCATLCAP-HEFQCSNRSCLAAVFVCDGDDDCGDGSDERGCADPACGPREFR 362
Query: 397 ----GRVCFPVR----RREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICV-- 546
G C P R R+ CE + E D G C A G CV
Sbjct: 363 CGGGGGTCIPERWVCDRQFDCEDRSDEAADLCPGATAAPAAC--AAAAQFACRSGECVHL 420
Query: 547 -TECRVDQDC------GEGRLCISNGCGRVCFPGRREGCEHQCREDRDCGSGHQ---CVR 696
C D+DC + L G C G +C +++DC G C++
Sbjct: 421 GWRCDGDRDCKDKSDEADCPLGTCRGDEFQCGDGTCVPTLKRCNQEQDCPDGSDEAGCLQ 480
Query: 697 KG-CGHVCAPVHQVGICV---TECNVDQDCGEG-----RQCTSN-------GCGRVCSPV 828
+ C + G CV C+ +DC + ++C N GC +C+ +
Sbjct: 481 ESTCEGPRRFQCKSGECVDGGKVCDAQRDCRDWSDEPLKECGLNECLHNNGGCSHICTDL 540
Query: 829 QQEDVGICVTECKV--DQDCGEGRRCTS-NGCGRVCSPVQQKEACE 957
+ C ++ + CG+ C + C ++C + CE
Sbjct: 541 KIGFECTCPAGYQLLDQKTCGDIDECEDPDACSQICVNYKGYFKCE 586
>ref|XP_533538.2| PREDICTED: similar to Very low-density lipoprotein receptor
precursor (VLDL receptor) isoform 1 [Canis familiaris].
Length = 873
Score = 52.4 bits (124), Expect = 7e-07
Identities = 68/276 (24%), Positives = 92/276 (33%), Gaps = 50/276 (18%)
Frame = +1
Query: 238 REDRDCGSGHQCVRKGCGHVCAPVH-QVDVGICVM---ECRVDQDCGEG---RLCISNGC 396
RE R G+G + C P Q G C+ +C D+DC +G + C+ C
Sbjct: 20 RESRATGAGRKAK-------CEPSQFQCTNGRCITLLWKCDGDEDCADGSDEKNCVKKTC 72
Query: 397 GRVCFPVRRREACEH--QCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTEC----- 555
F + + QC D DC G + C ++++ G T+C
Sbjct: 73 AESDFVCNNGQCVPNRWQCDGDPDCEDGSDENPEQCHMRTCRINEISCGARSTQCIPVSW 132
Query: 556 RVD--QDCGEGRLCISNGCGRV--------CFPGRREGCEHQCREDRDCGSGH---QCVR 696
R D DC G CG + C GR C DC G C
Sbjct: 133 RCDGENDCDSGE--DEENCGNITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCAP 190
Query: 697 KGCGH--------VCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQ------- 831
CG C P+ V C+ D DC + + CGR PV
Sbjct: 191 PTCGEHEFQCSTSSCIPLSWV------CDDDADCSDQSDESLEQCGR--QPVMHTKCPAS 242
Query: 832 --QEDVGICVTE---CKVDQDCGEGR---RCTSNGC 915
Q G C+ + C D DC +G C S C
Sbjct: 243 ETQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTC 278
>ref|XP_865155.1| PREDICTED: similar to odd Oz/ten-m homolog 1 isoform 3 [Canis
familiaris].
Length = 2705
Score = 51.6 bits (122), Expect = 1e-06
Identities = 63/243 (25%), Positives = 83/243 (34%), Gaps = 44/243 (18%)
Frame = +1
Query: 223 CEHQCREDRDCGSGH----------QCVRKGCGHVCAPVHQVDVGICVM-------ECRV 351
C C + +C SGH C R C +C + + G CV EC V
Sbjct: 513 CSTNCNGNGECISGHCHCFPGFLGPDCARDSCPVLCGGNGEYEKGHCVCRNGWKGPECDV 572
Query: 352 ------DQDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGC----- 498
D C CI C +C P + E CE + D C + CV+ C
Sbjct: 573 PEEQCIDPTCFGHGTCIMGVC--ICVPGYKGEICEEEDCLDPMCSNHGICVKGECHCSTG 630
Query: 499 --GHVC---APVHQ----------VDVGICVTECR-VDQDCGEGRLCISNGCGRVCFPGR 630
G C P+ Q +D G+C + + DC + G VC G
Sbjct: 631 WGGVNCETPLPICQEQCSGHGTFLLDAGVCSCDPKWTGSDCSTELCTMECGSHGVCSRGI 690
Query: 631 REGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCG 810
C QC E G C + C CA Q EC+ EG CT +GC
Sbjct: 691 ---C--QCEEG---WVGPTCEERSCHSHCAEHGQCKDGKCECSPG---WEGDHCTIDGCP 739
Query: 811 RVC 819
+C
Sbjct: 740 GLC 742
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,153,407
Number of extensions: 1707831
Number of successful extensions: 7001
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 6599
Number of HSP's successfully gapped: 30
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012519
(1027 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002695690.1| PREDICTED: hypothetical protein [Bos taurus]. 358 4e-99
Alignment gi|XP_593741.4| PREDICTED: hypothetical protein [Bos taurus]. 358 4e-99
Alignment gi|XP_002692529.1| PREDICTED: WAP four-disulfide core domain 3 ... 71 2e-12
Alignment gi|XP_001789331.1| PREDICTED: WAP four-disulfide core domain 3 ... 71 2e-12
Alignment gi|NP_777128.1| tenascin-X [Bos taurus]. 69 9e-12
Alignment gi|NP_001071494.1| tenascin C [Bos taurus]. 62 6e-10
Alignment gi|NP_001039916.2| multiple EGF-like-domains 10 [Bos taurus]. 59 9e-09
Alignment gi|XP_002689022.1| PREDICTED: multiple EGF-like-domains 10 [Bos... 59 9e-09
Alignment gi|XP_001788534.1| PREDICTED: multiple EGF-like-domains 10 [Bos... 59 9e-09
Alignment gi|XP_002707809.1| PREDICTED: hypothetical protein [Bos taurus]. 58 2e-08
>ref|XP_002695690.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 431
Score = 358 bits (919), Expect = 4e-99
Identities = 152/284 (53%), Positives = 191/284 (67%), Gaps = 3/284 (1%)
Frame = +1
Query: 106 VDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKG 285
+ VGICV +C+ DQDC AG +C SNGCG VCSP+ + C +C EDRDCG G QCV+ G
Sbjct: 95 MSVGICVEQCREDQDCAAGEKCISNGCGHVCSPVPQATICSLECSEDRDCGRGKQCVQDG 154
Query: 286 CGHVCAPVHQVDVGICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDC 465
C VC+P+ + VG+CV +CR DQDC G C+SNGCG VC PV + C +C EDRDC
Sbjct: 155 CQRVCSPL--MSVGVCVEQCREDQDCAAGEKCVSNGCGHVCSPVPQATICSRECSEDRDC 212
Query: 466 GSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRREG-C 642
G G QCV+ GC VC+P+ + VG+CV +CR D+DC G C+SNGCG VC P + C
Sbjct: 213 GRGKQCVQDGCRRVCSPL--MSVGVCVEQCREDRDCAAGEKCVSNGCGHVCSPAPQASIC 270
Query: 643 EHQCREDRDCGSGHQCVRKGCGHVCAPVHQ--VGICVTECNVDQDCGEGRQCTSNGCGRV 816
E QC DRDCG+G QCV +GC VC+P + +GICV C DCG G +C GC R+
Sbjct: 271 EFQCFRDRDCGAGRQCVSEGCNRVCSPAPEASIGICVQRCRGHWDCGAGERCIRRGCSRI 330
Query: 817 CSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKE 948
CSPV+ VGIC+ +C+ +DC G RC SNGCGRVCSP Q ++
Sbjct: 331 CSPVRTAGVGICLDQCQGHRDCPAGSRCVSNGCGRVCSPTQDRQ 374
Score = 353 bits (905), Expect(2) = 2e-98
Identities = 154/289 (53%), Positives = 190/289 (65%), Gaps = 3/289 (1%)
Frame = +1
Query: 112 VGICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCG 291
+G+CV +C+ DQDC AG +C SNGCG VCSP + C +C EDRDCG G QCV+ GC
Sbjct: 29 IGVCVEQCREDQDCVAGEKCISNGCGHVCSPAPQATICSLECSEDRDCGRGKQCVQDGCQ 88
Query: 292 HVCAPVHQVDVGICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGS 471
VC+P+ + VGICV +CR DQDC G CISNGCG VC PV + C +C EDRDCG
Sbjct: 89 RVCSPL--MSVGICVEQCREDQDCAAGEKCISNGCGHVCSPVPQATICSLECSEDRDCGR 146
Query: 472 GHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFP-GRREGCEH 648
G QCV+ GC VC+P+ + VG+CV +CR DQDC G C+SNGCG VC P + C
Sbjct: 147 GKQCVQDGCQRVCSPL--MSVGVCVEQCREDQDCAAGEKCVSNGCGHVCSPVPQATICSR 204
Query: 649 QCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPV 828
+C EDRDCG G QCV+ GC VC+P+ VG+CV +C D+DC G +C SNGCG VCSP
Sbjct: 205 ECSEDRDCGRGKQCVQDGCRRVCSPLMSVGVCVEQCREDRDCAAGEKCVSNGCGHVCSPA 264
Query: 829 QQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKE--ACELQCK 969
Q IC +C D+DCG GR+C S GC RVCSP + C +C+
Sbjct: 265 PQ--ASICEFQCFRDRDCGAGRQCVSEGCNRVCSPAPEASIGICVQRCR 311
Score = 25.4 bits (54), Expect(2) = 2e-98
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 966 QRRQDCWSGHXCLREGCGHV 1025
Q +DC +G C+ GCG V
Sbjct: 347 QGHRDCPAGSRCVSNGCGRV 366
Score = 318 bits (816), Expect(2) = 3e-88
Identities = 135/256 (52%), Positives = 169/256 (66%), Gaps = 1/256 (0%)
Frame = +1
Query: 223 CEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVMECRVDQDCGEGRLCISNGCGR 402
C QCRED+DC +G +C+ GCGHVC+P Q IC +EC D+DCG G+ C+ +GC R
Sbjct: 32 CVEQCREDQDCVAGEKCISNGCGHVCSPAPQAT--ICSLECSEDRDCGRGKQCVQDGCQR 89
Query: 403 VCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEG 582
VC P+ C QCRED+DC +G +C+ GCGHVC+PV Q IC EC D+DCG G
Sbjct: 90 VCSPLMSVGICVEQCREDQDCAAGEKCISNGCGHVCSPVPQAT--ICSLECSEDRDCGRG 147
Query: 583 RLCISNGCGRVCFPGRREG-CEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECN 759
+ C+ +GC RVC P G C QCRED+DC +G +CV GCGHVC+PV Q IC EC+
Sbjct: 148 KQCVQDGCQRVCSPLMSVGVCVEQCREDQDCAAGEKCVSNGCGHVCSPVPQATICSRECS 207
Query: 760 VDQDCGEGRQCTSNGCGRVCSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQ 939
D+DCG G+QC +GC RVCSP+ VG+CV +C+ D+DC G +C SNGCG VCSP
Sbjct: 208 EDRDCGRGKQCVQDGCRRVCSPLMS--VGVCVEQCREDRDCAAGEKCVSNGCGHVCSPAP 265
Query: 940 QKEACELQCKEDRTVG 987
Q CE QC DR G
Sbjct: 266 QASICEFQCFRDRDCG 281
Score = 26.2 bits (56), Expect(2) = 3e-88
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 969 RRQDCWSGHXCLREGCGHV 1025
R +DC +G C+ EGC V
Sbjct: 276 RDRDCGAGRQCVSEGCNRV 294
Score = 285 bits (728), Expect = 6e-77
Identities = 122/257 (47%), Positives = 152/257 (59%), Gaps = 19/257 (7%)
Frame = +1
Query: 106 VDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKG 285
+ VG+CV +C+ DQDC AG +C SNGCG VCSP+ + C +C EDRDCG G QCV+ G
Sbjct: 163 MSVGVCVEQCREDQDCAAGEKCVSNGCGHVCSPVPQATICSRECSEDRDCGRGKQCVQDG 222
Query: 286 CGHVCAPVHQVDVGICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDC 465
C VC+P+ + VG+CV +CR D+DC G C+SNGCG VC P + CE QC DRDC
Sbjct: 223 CRRVCSPL--MSVGVCVEQCREDRDCAAGEKCVSNGCGHVCSPAPQASICEFQCFRDRDC 280
Query: 466 GSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRREG-- 639
G+G QCV +GC VC+P + +GICV CR DCG G CI GC R+C P R G
Sbjct: 281 GAGRQCVSEGCNRVCSPAPEASIGICVQRCRGHWDCGAGERCIRRGCSRICSPVRTAGVG 340
Query: 640 -CEHQCREDRDCGSGHQCVRKGCGHVCAPVH----------------QVGICVTECNVDQ 768
C QC+ RDC +G +CV GCG VC+P G C C D
Sbjct: 341 ICLDQCQGHRDCPAGSRCVSNGCGRVCSPTQDRQEQRPGTCPRVPEGMFGTCAERCTGDG 400
Query: 769 DCGEGRQCTSNGCGRVC 819
C G++C SNGCG+ C
Sbjct: 401 SCPPGQKCCSNGCGKSC 417
Score = 141 bits (356), Expect = 8e-34
Identities = 63/154 (40%), Positives = 82/154 (53%), Gaps = 18/154 (11%)
Frame = +1
Query: 103 AVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRRE--ACEHQCREDRDCGSGHQCV 276
A IC +C D+DCGAGR+C S GC RVCSP C +CR DCG+G +C+
Sbjct: 264 APQASICEFQCFRDRDCGAGRQCVSEGCNRVCSPAPEASIGICVQRCRGHWDCGAGERCI 323
Query: 277 RKGCGHVCAPVHQVDVGICVMECRVDQDCGEGRLCISNGCGRVCFPVRRRE--------- 429
R+GC +C+PV VGIC+ +C+ +DC G C+SNGCGRVC P + R+
Sbjct: 324 RRGCSRICSPVRTAGVGICLDQCQGHRDCPAGSRCVSNGCGRVCSPTQDRQEQRPGTCPR 383
Query: 430 -------ACEHQCREDRDCGSGHQCVRKGCGHVC 510
C +C D C G +C GCG C
Sbjct: 384 VPEGMFGTCAERCTGDGSCPPGQKCCSNGCGKSC 417
Score = 71.2 bits (173), Expect(2) = 2e-15
Identities = 27/49 (55%), Positives = 33/49 (67%)
Frame = +1
Query: 841 VGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQCKEDRTVG 987
+G+CV +C+ DQDC G +C SNGCG VCSP Q C L+C EDR G
Sbjct: 29 IGVCVEQCREDQDCVAGEKCISNGCGHVCSPAPQATICSLECSEDRDCG 77
Score = 30.0 bits (66), Expect(2) = 2e-15
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 975 QDCWSGHXCLREGCGHV 1025
QDC +G C+ GCGHV
Sbjct: 108 QDCAAGEKCISNGCGHV 124
>ref|XP_593741.4| PREDICTED: hypothetical protein [Bos taurus].
Length = 431
Score = 358 bits (919), Expect = 4e-99
Identities = 152/284 (53%), Positives = 191/284 (67%), Gaps = 3/284 (1%)
Frame = +1
Query: 106 VDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKG 285
+ VGICV +C+ DQDC AG +C SNGCG VCSP+ + C +C EDRDCG G QCV+ G
Sbjct: 95 MSVGICVEQCREDQDCAAGEKCISNGCGHVCSPVPQATICSLECSEDRDCGRGKQCVQDG 154
Query: 286 CGHVCAPVHQVDVGICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDC 465
C VC+P+ + VG+CV +CR DQDC G C+SNGCG VC PV + C +C EDRDC
Sbjct: 155 CQRVCSPL--MSVGVCVEQCREDQDCAAGEKCVSNGCGHVCSPVPQATICSRECSEDRDC 212
Query: 466 GSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRREG-C 642
G G QCV+ GC VC+P+ + VG+CV +CR D+DC G C+SNGCG VC P + C
Sbjct: 213 GRGKQCVQDGCRRVCSPL--MSVGVCVEQCREDRDCAAGEKCVSNGCGHVCSPAPQASIC 270
Query: 643 EHQCREDRDCGSGHQCVRKGCGHVCAPVHQ--VGICVTECNVDQDCGEGRQCTSNGCGRV 816
E QC DRDCG+G QCV +GC VC+P + +GICV C DCG G +C GC R+
Sbjct: 271 EFQCFRDRDCGAGRQCVSEGCNRVCSPAPEASIGICVQRCRGHWDCGAGERCIRRGCSRI 330
Query: 817 CSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKE 948
CSPV+ VGIC+ +C+ +DC G RC SNGCGRVCSP Q ++
Sbjct: 331 CSPVRTAGVGICLDQCQGHRDCPAGSRCVSNGCGRVCSPTQDRQ 374
Score = 353 bits (905), Expect(2) = 2e-98
Identities = 154/289 (53%), Positives = 190/289 (65%), Gaps = 3/289 (1%)
Frame = +1
Query: 112 VGICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCG 291
+G+CV +C+ DQDC AG +C SNGCG VCSP + C +C EDRDCG G QCV+ GC
Sbjct: 29 IGVCVEQCREDQDCVAGEKCISNGCGHVCSPAPQATICSLECSEDRDCGRGKQCVQDGCQ 88
Query: 292 HVCAPVHQVDVGICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGS 471
VC+P+ + VGICV +CR DQDC G CISNGCG VC PV + C +C EDRDCG
Sbjct: 89 RVCSPL--MSVGICVEQCREDQDCAAGEKCISNGCGHVCSPVPQATICSLECSEDRDCGR 146
Query: 472 GHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFP-GRREGCEH 648
G QCV+ GC VC+P+ + VG+CV +CR DQDC G C+SNGCG VC P + C
Sbjct: 147 GKQCVQDGCQRVCSPL--MSVGVCVEQCREDQDCAAGEKCVSNGCGHVCSPVPQATICSR 204
Query: 649 QCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPV 828
+C EDRDCG G QCV+ GC VC+P+ VG+CV +C D+DC G +C SNGCG VCSP
Sbjct: 205 ECSEDRDCGRGKQCVQDGCRRVCSPLMSVGVCVEQCREDRDCAAGEKCVSNGCGHVCSPA 264
Query: 829 QQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKE--ACELQCK 969
Q IC +C D+DCG GR+C S GC RVCSP + C +C+
Sbjct: 265 PQ--ASICEFQCFRDRDCGAGRQCVSEGCNRVCSPAPEASIGICVQRCR 311
Score = 25.4 bits (54), Expect(2) = 2e-98
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 966 QRRQDCWSGHXCLREGCGHV 1025
Q +DC +G C+ GCG V
Sbjct: 347 QGHRDCPAGSRCVSNGCGRV 366
Score = 318 bits (816), Expect(2) = 3e-88
Identities = 135/256 (52%), Positives = 169/256 (66%), Gaps = 1/256 (0%)
Frame = +1
Query: 223 CEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVMECRVDQDCGEGRLCISNGCGR 402
C QCRED+DC +G +C+ GCGHVC+P Q IC +EC D+DCG G+ C+ +GC R
Sbjct: 32 CVEQCREDQDCVAGEKCISNGCGHVCSPAPQAT--ICSLECSEDRDCGRGKQCVQDGCQR 89
Query: 403 VCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEG 582
VC P+ C QCRED+DC +G +C+ GCGHVC+PV Q IC EC D+DCG G
Sbjct: 90 VCSPLMSVGICVEQCREDQDCAAGEKCISNGCGHVCSPVPQAT--ICSLECSEDRDCGRG 147
Query: 583 RLCISNGCGRVCFPGRREG-CEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECN 759
+ C+ +GC RVC P G C QCRED+DC +G +CV GCGHVC+PV Q IC EC+
Sbjct: 148 KQCVQDGCQRVCSPLMSVGVCVEQCREDQDCAAGEKCVSNGCGHVCSPVPQATICSRECS 207
Query: 760 VDQDCGEGRQCTSNGCGRVCSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQ 939
D+DCG G+QC +GC RVCSP+ VG+CV +C+ D+DC G +C SNGCG VCSP
Sbjct: 208 EDRDCGRGKQCVQDGCRRVCSPLMS--VGVCVEQCREDRDCAAGEKCVSNGCGHVCSPAP 265
Query: 940 QKEACELQCKEDRTVG 987
Q CE QC DR G
Sbjct: 266 QASICEFQCFRDRDCG 281
Score = 26.2 bits (56), Expect(2) = 3e-88
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 969 RRQDCWSGHXCLREGCGHV 1025
R +DC +G C+ EGC V
Sbjct: 276 RDRDCGAGRQCVSEGCNRV 294
Score = 285 bits (728), Expect = 6e-77
Identities = 122/257 (47%), Positives = 152/257 (59%), Gaps = 19/257 (7%)
Frame = +1
Query: 106 VDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKG 285
+ VG+CV +C+ DQDC AG +C SNGCG VCSP+ + C +C EDRDCG G QCV+ G
Sbjct: 163 MSVGVCVEQCREDQDCAAGEKCVSNGCGHVCSPVPQATICSRECSEDRDCGRGKQCVQDG 222
Query: 286 CGHVCAPVHQVDVGICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDC 465
C VC+P+ + VG+CV +CR D+DC G C+SNGCG VC P + CE QC DRDC
Sbjct: 223 CRRVCSPL--MSVGVCVEQCREDRDCAAGEKCVSNGCGHVCSPAPQASICEFQCFRDRDC 280
Query: 466 GSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRREG-- 639
G+G QCV +GC VC+P + +GICV CR DCG G CI GC R+C P R G
Sbjct: 281 GAGRQCVSEGCNRVCSPAPEASIGICVQRCRGHWDCGAGERCIRRGCSRICSPVRTAGVG 340
Query: 640 -CEHQCREDRDCGSGHQCVRKGCGHVCAPVH----------------QVGICVTECNVDQ 768
C QC+ RDC +G +CV GCG VC+P G C C D
Sbjct: 341 ICLDQCQGHRDCPAGSRCVSNGCGRVCSPTQDRQEQRPGTCPRVPEGMFGTCAERCTGDG 400
Query: 769 DCGEGRQCTSNGCGRVC 819
C G++C SNGCG+ C
Sbjct: 401 SCPPGQKCCSNGCGKSC 417
Score = 141 bits (356), Expect = 8e-34
Identities = 63/154 (40%), Positives = 82/154 (53%), Gaps = 18/154 (11%)
Frame = +1
Query: 103 AVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRRE--ACEHQCREDRDCGSGHQCV 276
A IC +C D+DCGAGR+C S GC RVCSP C +CR DCG+G +C+
Sbjct: 264 APQASICEFQCFRDRDCGAGRQCVSEGCNRVCSPAPEASIGICVQRCRGHWDCGAGERCI 323
Query: 277 RKGCGHVCAPVHQVDVGICVMECRVDQDCGEGRLCISNGCGRVCFPVRRRE--------- 429
R+GC +C+PV VGIC+ +C+ +DC G C+SNGCGRVC P + R+
Sbjct: 324 RRGCSRICSPVRTAGVGICLDQCQGHRDCPAGSRCVSNGCGRVCSPTQDRQEQRPGTCPR 383
Query: 430 -------ACEHQCREDRDCGSGHQCVRKGCGHVC 510
C +C D C G +C GCG C
Sbjct: 384 VPEGMFGTCAERCTGDGSCPPGQKCCSNGCGKSC 417
Score = 71.2 bits (173), Expect(2) = 2e-15
Identities = 27/49 (55%), Positives = 33/49 (67%)
Frame = +1
Query: 841 VGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQCKEDRTVG 987
+G+CV +C+ DQDC G +C SNGCG VCSP Q C L+C EDR G
Sbjct: 29 IGVCVEQCREDQDCVAGEKCISNGCGHVCSPAPQATICSLECSEDRDCG 77
Score = 30.0 bits (66), Expect(2) = 2e-15
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 975 QDCWSGHXCLREGCGHV 1025
QDC +G C+ GCGHV
Sbjct: 108 QDCAAGEKCISNGCGHV 124
>ref|XP_002692529.1| PREDICTED: WAP four-disulfide core domain 3 [Bos taurus].
Length = 197
Score = 70.9 bits (172), Expect = 2e-12
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Frame = +1
Query: 640 CEHQCREDRDCGSGHQCVRKGCGHVC-----------APVHQVGICVTECNVDQDCGEGR 786
CE C D C GH+C GCGH C P VG+C+ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 787 QCTSNGCGRVCSP 825
+C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 68.6 bits (166), Expect = 9e-12
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Frame = +1
Query: 223 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVMECRVDQDCGEGR 375
CE C D C GH+C GCGH C + VG+C++ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 376 LCISNGCGRVCFP 414
C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 68.2 bits (165), Expect = 1e-11
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Frame = +1
Query: 433 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECRVDQDCGEGR 585
CE C D C GH+C GCGH C + VG+C+ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 586 LCISNGCGRVCFP 624
C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 63.5 bits (153), Expect = 3e-10
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Frame = +1
Query: 742 CVTECNVDQDCGEGRQCTSNGCGRVC---------SPVQQEDVGICVTECKVDQDCGEGR 894
C C+ D C +G +C S GCG C + VG+C+ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 895 RCTSNGCGRVCSP 933
+C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 53.5 bits (127), Expect = 3e-07
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Frame = +1
Query: 541 CVTECRVDQDCGEGRLCISNGCGRVCFPGRREG------------CEHQCREDRDCGSGH 684
C C D C +G C S GCG CF + G C C D +C +G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 685 QCVRKGCGHVCAP 723
+C + GCG C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 50.1 bits (118), Expect = 3e-06
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Frame = +1
Query: 121 CVTECKVDQDCGAGRRCTSNGCGRVC-----------SPIRRREACEHQCREDRDCGSGH 267
C C D C G +C S GCG C P C C D +C +G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 268 QCVRKGCGHVCAP 306
+C + GCG C P
Sbjct: 170 KCCKSGCGRFCVP 182
>ref|XP_001789331.1| PREDICTED: WAP four-disulfide core domain 3 [Bos taurus].
Length = 197
Score = 70.9 bits (172), Expect = 2e-12
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Frame = +1
Query: 640 CEHQCREDRDCGSGHQCVRKGCGHVC-----------APVHQVGICVTECNVDQDCGEGR 786
CE C D C GH+C GCGH C P VG+C+ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 787 QCTSNGCGRVCSP 825
+C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 68.6 bits (166), Expect = 9e-12
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Frame = +1
Query: 223 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVMECRVDQDCGEGR 375
CE C D C GH+C GCGH C + VG+C++ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 376 LCISNGCGRVCFP 414
C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 68.2 bits (165), Expect = 1e-11
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Frame = +1
Query: 433 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECRVDQDCGEGR 585
CE C D C GH+C GCGH C + VG+C+ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 586 LCISNGCGRVCFP 624
C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 63.5 bits (153), Expect = 3e-10
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Frame = +1
Query: 742 CVTECNVDQDCGEGRQCTSNGCGRVC---------SPVQQEDVGICVTECKVDQDCGEGR 894
C C+ D C +G +C S GCG C + VG+C+ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 895 RCTSNGCGRVCSP 933
+C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 53.5 bits (127), Expect = 3e-07
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Frame = +1
Query: 541 CVTECRVDQDCGEGRLCISNGCGRVCFPGRREG------------CEHQCREDRDCGSGH 684
C C D C +G C S GCG CF + G C C D +C +G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 685 QCVRKGCGHVCAP 723
+C + GCG C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 50.1 bits (118), Expect = 3e-06
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Frame = +1
Query: 121 CVTECKVDQDCGAGRRCTSNGCGRVC-----------SPIRRREACEHQCREDRDCGSGH 267
C C D C G +C S GCG C P C C D +C +G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 268 QCVRKGCGHVCAP 306
+C + GCG C P
Sbjct: 170 KCCKSGCGRFCVP 182
>ref|NP_777128.1| tenascin-X [Bos taurus].
Length = 4135
Score = 68.6 bits (166), Expect = 9e-12
Identities = 84/290 (28%), Positives = 101/290 (34%), Gaps = 20/290 (6%)
Frame = +1
Query: 148 DCGAGRRCTSNGCGRVCSPIRRRE-----ACEHQCREDRDCGSGHQCVRKGCGHVCAPVH 312
DCG G RC C VC P E C CR R C G +C +C P +
Sbjct: 344 DCGEGGRCVDGRC--VCWPGYAGEDCSTRTCPRDCRGPRGCEDG-EC-------ICDPGY 393
Query: 313 QVD---VGICVMECRVDQDCGEGR-LCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQ 480
D V C +C C +GR +C G C AC CR C +G
Sbjct: 394 SGDDCGVRSCPSDCNQRGRCEDGRCVCWPGYSGPDC----GARACPRDCRGRGRCENG-V 448
Query: 481 CVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGR-LCISNGCGRVCFPGRREGCEHQCR 657
CV C H V C +CR C GR +C GR C G R C CR
Sbjct: 449 CV---C-HAGYSGEDCGVRSCPGDCRRRGRCESGRCVCWPGYTGRDC--GTR-ACPGDCR 501
Query: 658 EDRDC----------GSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGC 807
C +G C + C C + G V C+V EG C C
Sbjct: 502 GRGRCVDGRCVCNPGFAGEDCGSRRCPGDCRGRGRCGDGVCSCDVGY---EGEDCGKRSC 558
Query: 808 GRVCSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACE 957
R C Q G CV + D EG C C R C+ Q+ C+
Sbjct: 559 PRGCQGRGQCLEGRCVCD-----DGYEGEDCGVRRCPRDCN---QRGVCQ 600
Score = 53.1 bits (126), Expect = 4e-07
Identities = 64/216 (29%), Positives = 77/216 (35%), Gaps = 10/216 (4%)
Frame = +1
Query: 358 DCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVD-- 531
DC + C+ C VCFP +C DC +CV+ C VC D
Sbjct: 189 DCNDQGRCVRGRC--VCFPGYTGPSCSWPSCPG-DCHGRGRCVQGVC--VCRSGFSGDDC 243
Query: 532 -VGICVTECRVDQDCGEGRLCISNGCGRVCFPGRR-EGCE-HQCREDRDCGSGHQCVRKG 702
V C C C +GR VC PG E C C RDC +C
Sbjct: 244 SVRSCPRGCSQRGRCEDGRC--------VCNPGYSGEDCGVRSC--PRDCSQRGRCENGR 293
Query: 703 CGHVCAPVHQVGIC-VTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICVTEC---KV 870
C VC P + C V C + C + +C C VC P G +C
Sbjct: 294 C--VCNPGYTGDDCGVRSC--PRGCSQKGRCEDGRC--VCDP------GYTGDDCGSRTC 341
Query: 871 DQDCGEGRRCTSNGCGRVCSPVQQKEACELQ-CKED 975
DCGEG RC C VC P E C + C D
Sbjct: 342 PWDCGEGGRCVDGRC--VCWPGYAGEDCSTRTCPRD 375
>ref|NP_001071494.1| tenascin C [Bos taurus].
Length = 1746
Score = 62.4 bits (150), Expect = 6e-10
Identities = 93/337 (27%), Positives = 120/337 (35%), Gaps = 62/337 (18%)
Frame = +1
Query: 151 CGAGRRCTSNGCGRVCSPIRRREAC-EHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVG 327
C ++ GCG VC P + C E +C +C QC+ C VC H+ G
Sbjct: 161 CSGRGNFSTEGCGCVCEPGWKGPNCSEPEC--PGNCHLHGQCLDGQC--VC---HEGFTG 213
Query: 328 ICVMECRVDQDCGEGRLCISNGCGRVCFPVR-----RREACEHQCRED-----------R 459
+ DC + C+ C VCF +E C C E+ +
Sbjct: 214 EDCGQLACPSDCNDQGKCVDGAC--VCFEGYSGLDCSQETCPVPCSEEHGRCVDGRCVCQ 271
Query: 460 DCGSGHQCVRKGCGHVCAPVHQVDVGICV-TECRVDQ-----DCGE----------GRLC 591
+ +G C C H C G CV EC D+ DCGE GR C
Sbjct: 272 EGFAGEDCREPLCLHNCH-----GRGRCVENECVCDEGFTGDDCGELVCPNDCFDRGR-C 325
Query: 592 ISNGCGRVC---FPGRREG---CEHQCREDRDCGSGH----------QCVRKGCGHVCAP 723
++ C C F G G C H C C G C + C C
Sbjct: 326 LNGTCS--CDEGFTGEDCGQLACPHACHGHGRCDEGQCVCDEGFAGPDCSERRCPSDC-- 381
Query: 724 VHQVGICV---TECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICV-TECKVDQDCGEG 891
H+ G CV ECN D G C C R CS + G CV E +DCG+
Sbjct: 382 -HERGRCVDGRCECN---DGFTGADCGELQCPRDCSGHGRCVNGQCVCDEGYTGEDCGQ- 436
Query: 892 RRCTSNGCGR--------VCSPVQQKEAC-ELQCKED 975
R+C S+ GR C P Q + C E+ C D
Sbjct: 437 RQCPSDCHGRGRCVDGLCECQPGFQGDDCGEMSCPHD 473
Score = 60.8 bits (146), Expect = 2e-09
Identities = 79/289 (27%), Positives = 95/289 (32%), Gaps = 19/289 (6%)
Frame = +1
Query: 118 ICVTECK-----VDQDCGAGRRCTSNGCGRVCSP---IRRREACEHQCREDRDCGSGHQC 273
+C+ C V+ +C T + CG + P R C D +G C
Sbjct: 283 LCLHNCHGRGRCVENECVCDEGFTGDDCGELVCPNDCFDRGRCLNGTCSCDEGF-TGEDC 341
Query: 274 VRKGCGHVCAPVHQVDVGICVM----------ECRVDQDCGEGRLCISNGCGRVCFPVRR 423
+ C H C + D G CV E R DC E C+ C C
Sbjct: 342 GQLACPHACHGHGRCDEGQCVCDEGFAGPDCSERRCPSDCHERGRCVDGRCE--CNDGFT 399
Query: 424 REAC-EHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISN 600
C E QC RDC +CV C VC E +DCG+ R C S+
Sbjct: 400 GADCGELQC--PRDCSGHGRCVNGQC--VC------------DEGYTGEDCGQ-RQCPSD 442
Query: 601 GCGRVCFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGE 780
GR GR C E + G C C H C HQ G CV V D
Sbjct: 443 CHGR----GR---CVDGLCECQPGFQGDDCGEMSCPHDC---HQHGRCVNGMCVCDDAYT 492
Query: 781 GRQCTSNGCGRVCSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVC 927
G C C CS G CV V +D G C C C
Sbjct: 493 GEDCRELRCPGDCS-----QRGRCVDGRCVCEDGFAGPDCADLACPGNC 536
Score = 55.1 bits (131), Expect = 1e-07
Identities = 88/350 (25%), Positives = 116/350 (33%), Gaps = 65/350 (18%)
Frame = +1
Query: 139 VDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCG----------SGHQCVRKGC 288
+D C T CG++ AC C + C SG C ++ C
Sbjct: 201 LDGQCVCHEGFTGEDCGQL--------ACPSDCNDQGKCVDGACVCFEGYSGLDCSQETC 252
Query: 289 GHVCAPVHQVDV-GICV-MECRVDQDC----------GEGRLCISNGC-------GRVCF 411
C+ H V G CV E +DC G GR C+ N C G C
Sbjct: 253 PVPCSEEHGRCVDGRCVCQEGFAGEDCREPLCLHNCHGRGR-CVENECVCDEGFTGDDCG 311
Query: 412 PVRRREACEHQCREDRDC----------GSGHQCVRKGCGHVCAPVHQVDVGICV----- 546
+ C + C + C +G C + C H C + D G CV
Sbjct: 312 EL----VCPNDCFDRGRCLNGTCSCDEGFTGEDCGQLACPHACHGHGRCDEGQCVCDEGF 367
Query: 547 -----TECRVDQDCGEGRLCISNGCGRVC---FPGRREGCEHQCREDRDCGSGHQCVRKG 702
+E R DC E C+ C C F G G E QC RDC +CV
Sbjct: 368 AGPDCSERRCPSDCHERGRCVDGRCE--CNDGFTGADCG-ELQC--PRDCSGHGRCVNGQ 422
Query: 703 C-------GHVCAPVHQVGICVTECNVDQDCGEGR-QCT----SNGCGRVCSPVQQEDVG 846
C G C C ++C+ C +G +C + CG + P G
Sbjct: 423 CVCDEGYTGEDCGQRQ----CPSDCHGRGRCVDGLCECQPGFQGDDCGEMSCPHDCHQHG 478
Query: 847 ICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQCK-EDRTVGVD 993
CV V D G C C CS Q+ + +C ED G D
Sbjct: 479 RCVNGMCVCDDAYTGEDCRELRCPGDCS--QRGRCVDGRCVCEDGFAGPD 526
Score = 52.4 bits (124), Expect = 6e-07
Identities = 76/274 (27%), Positives = 94/274 (34%), Gaps = 6/274 (2%)
Frame = +1
Query: 130 ECKVDQDCGAGRRCTSNGCGRVCSPIRRREAC-EHQCREDRDCGSGHQCVRKGCGHVCAP 306
E + +DC RC + C VC E C + QC D C +CV C C P
Sbjct: 405 ELQCPRDCSGHGRCVNGQC--VCDEGYTGEDCGQRQCPSD--CHGRGRCVDGLCE--CQP 458
Query: 307 VHQVDVGICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCV 486
Q D M C DC + C++ C VC E C + R DC +CV
Sbjct: 459 GFQGD-DCGEMSC--PHDCHQHGRCVNGMC--VCDDAYTGEDCR-ELRCPGDCSQRGRCV 512
Query: 487 RKGCGHVCAPVHQVDVGICVTECRVDQDC-----GEGRLCISNGCGRVCFPGRREGCEHQ 651
C VC + G +C D C G GR C+ C VC G
Sbjct: 513 DGRC--VC------EDGFAGPDC-ADLACPGNCHGRGR-CVDGQC--VCLEGF------- 553
Query: 652 CREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQ 831
+G C ++ C C H G CV V + G C C CS
Sbjct: 554 --------TGPDCAQRRCPGDC---HGQGRCVDGQCVCHEGFTGPDCAQRSCPNDCSNWG 602
Query: 832 QEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSP 933
Q G CV C EG T C +V P
Sbjct: 603 QCVSGRCV--------CNEG--YTGEDCSQVSPP 626
>ref|NP_001039916.2| multiple EGF-like-domains 10 [Bos taurus].
Length = 1136
Score = 58.5 bits (140), Expect = 9e-09
Identities = 72/309 (23%), Positives = 98/309 (31%), Gaps = 31/309 (10%)
Frame = +1
Query: 133 CKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDR---------DCGSGHQCVRKG 285
C + C G C + C+P R E CE C++ DC C
Sbjct: 495 CNLTCQCLNGGACNTLDGTCTCAPGWRGEKCEFPCQDGTYGLNCAERCDCSHADGC-HST 553
Query: 286 CGHV-CAP----VHQVDV---GICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEH 441
GH C P VH V G C + C G C + C P R C+
Sbjct: 554 TGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 613
Query: 442 QCREDRDCGSGHQCVRK--GCGHVCAPVHQVDVGIC-----VTECRVDQDCGEGRLCISN 600
C GH+C + C H P H + G+C T ++ C GR
Sbjct: 614 ICSPGF---YGHRCSQTCPQCVHSSGPCHHI-TGLCDCLPGFTGALCNEVCPSGRF--GK 667
Query: 601 GCGRVCFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGE 780
C +C C DR C + C C P H C+ CN C
Sbjct: 668 NCAGICTCTNNGTCNPI---DRSCQCYPGWIGSDCSQPCPPAHWGPNCIHTCN----CHN 720
Query: 781 GRQCTSNGCGRVCSP-------VQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQ 939
G C++ C+P Q+ +G +C + C G C C
Sbjct: 721 GAFCSAYDGECKCTPGWTGLYCTQRCPLGFYGKDCALVCQCQNGADCDHISGQCTCRTGF 780
Query: 940 QKEACELQC 966
+ CE +C
Sbjct: 781 MGKHCEQKC 789
Score = 51.6 bits (122), Expect = 1e-06
Identities = 77/285 (27%), Positives = 97/285 (34%), Gaps = 22/285 (7%)
Frame = +1
Query: 184 CGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVMECRVDQDC 363
C CSP EAC+ C C +G C +CAP G ++C + C
Sbjct: 396 CNETCSPGFYGEACQQIC----SCQNGADCDSVTGKCICAP------GFKGIDCSIP--C 443
Query: 364 GEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVC-APVHQVDVGI 540
G I+ C +C C+ D C V C C A H VD I
Sbjct: 444 PLGTYGIN--CSSLC-----------SCKNDAVCSP----VDGSC--TCNAGWHGVDCSI 484
Query: 541 CVTE------CRVDQDCGEGRLCISNGCGRVCFPG-RREGCEHQCREDRDCGSGHQCVRK 699
C + C G C + C PG R E CE C+ D G C +
Sbjct: 485 SCPSGTWGFGCNLTCQCLNGGACNTLDGTCTCAPGWRGEKCEFPCQ---DGTYGLNCAER 541
Query: 700 -GCGHVCAPVHQVGICV-----TECNVDQDCGEGR---QCT-----SNGCGRVCSPVQQE 837
C H G C + + D C EGR C+ NG CSP
Sbjct: 542 CDCSHADGCHSTTGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGAS--CSP---- 595
Query: 838 DVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQCKE 972
D GIC +C G R T+ C R+CSP C C +
Sbjct: 596 DDGIC--------ECAPGFRGTT--CQRICSPGFYGHRCSQTCPQ 630
>ref|XP_002689022.1| PREDICTED: multiple EGF-like-domains 10 [Bos taurus].
Length = 1136
Score = 58.5 bits (140), Expect = 9e-09
Identities = 72/309 (23%), Positives = 98/309 (31%), Gaps = 31/309 (10%)
Frame = +1
Query: 133 CKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDR---------DCGSGHQCVRKG 285
C + C G C + C+P R E CE C++ DC C
Sbjct: 495 CNLTCQCLNGGACNTLDGTCTCAPGWRGEKCEFPCQDGTYGLNCAERCDCSHADGC-HST 553
Query: 286 CGHV-CAP----VHQVDV---GICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEH 441
GH C P VH V G C + C G C + C P R C+
Sbjct: 554 TGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 613
Query: 442 QCREDRDCGSGHQCVRK--GCGHVCAPVHQVDVGIC-----VTECRVDQDCGEGRLCISN 600
C GH+C + C H P H + G+C T ++ C GR
Sbjct: 614 ICSPGF---YGHRCSQTCPQCVHSSGPCHHI-TGLCDCLPGFTGALCNEVCPSGRF--GK 667
Query: 601 GCGRVCFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGE 780
C +C C DR C + C C P H C+ CN C
Sbjct: 668 NCAGICTCTNNGTCNPI---DRSCQCYPGWIGSDCSQPCPPAHWGPNCIHTCN----CHN 720
Query: 781 GRQCTSNGCGRVCSP-------VQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQ 939
G C++ C+P Q+ +G +C + C G C C
Sbjct: 721 GAFCSAYDGECKCTPGWTGLYCTQRCPLGFYGKDCALVCQCQNGADCDHISGQCTCRTGF 780
Query: 940 QKEACELQC 966
+ CE +C
Sbjct: 781 MGKHCEQKC 789
Score = 51.6 bits (122), Expect = 1e-06
Identities = 77/285 (27%), Positives = 97/285 (34%), Gaps = 22/285 (7%)
Frame = +1
Query: 184 CGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVMECRVDQDC 363
C CSP EAC+ C C +G C +CAP G ++C + C
Sbjct: 396 CNETCSPGFYGEACQQIC----SCQNGADCDSVTGKCICAP------GFKGIDCSIP--C 443
Query: 364 GEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVC-APVHQVDVGI 540
G I+ C +C C+ D C V C C A H VD I
Sbjct: 444 PLGTYGIN--CSSLC-----------SCKNDAVCSP----VDGSC--TCNAGWHGVDCSI 484
Query: 541 CVTE------CRVDQDCGEGRLCISNGCGRVCFPG-RREGCEHQCREDRDCGSGHQCVRK 699
C + C G C + C PG R E CE C+ D G C +
Sbjct: 485 SCPSGTWGFGCNLTCQCLNGGACNTLDGTCTCAPGWRGEKCEFPCQ---DGTYGLNCAER 541
Query: 700 -GCGHVCAPVHQVGICV-----TECNVDQDCGEGR---QCT-----SNGCGRVCSPVQQE 837
C H G C + + D C EGR C+ NG CSP
Sbjct: 542 CDCSHADGCHSTTGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGAS--CSP---- 595
Query: 838 DVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQCKE 972
D GIC +C G R T+ C R+CSP C C +
Sbjct: 596 DDGIC--------ECAPGFRGTT--CQRICSPGFYGHRCSQTCPQ 630
>ref|XP_001788534.1| PREDICTED: multiple EGF-like-domains 10 [Bos taurus].
Length = 1136
Score = 58.5 bits (140), Expect = 9e-09
Identities = 72/309 (23%), Positives = 98/309 (31%), Gaps = 31/309 (10%)
Frame = +1
Query: 133 CKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDR---------DCGSGHQCVRKG 285
C + C G C + C+P R E CE C++ DC C
Sbjct: 495 CNLTCQCLNGGACNTLDGTCTCAPGWRGEKCEFPCQDGTYGLNCAERCDCSHADGC-HST 553
Query: 286 CGHV-CAP----VHQVDV---GICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEH 441
GH C P VH V G C + C G C + C P R C+
Sbjct: 554 TGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 613
Query: 442 QCREDRDCGSGHQCVRK--GCGHVCAPVHQVDVGIC-----VTECRVDQDCGEGRLCISN 600
C GH+C + C H P H + G+C T ++ C GR
Sbjct: 614 ICSPGF---YGHRCSQTCPQCVHSSGPCHHI-TGLCDCLPGFTGALCNEVCPSGRF--GK 667
Query: 601 GCGRVCFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGE 780
C +C C DR C + C C P H C+ CN C
Sbjct: 668 NCAGICTCTNNGTCNPI---DRSCQCYPGWIGSDCSQPCPPAHWGPNCIHTCN----CHN 720
Query: 781 GRQCTSNGCGRVCSP-------VQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQ 939
G C++ C+P Q+ +G +C + C G C C
Sbjct: 721 GAFCSAYDGECKCTPGWTGLYCTQRCPLGFYGKDCALVCQCQNGADCDHISGQCTCRTGF 780
Query: 940 QKEACELQC 966
+ CE +C
Sbjct: 781 MGKHCEQKC 789
Score = 51.6 bits (122), Expect = 1e-06
Identities = 77/285 (27%), Positives = 97/285 (34%), Gaps = 22/285 (7%)
Frame = +1
Query: 184 CGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVMECRVDQDC 363
C CSP EAC+ C C +G C +CAP G ++C + C
Sbjct: 396 CNETCSPGFYGEACQQIC----SCQNGADCDSVTGKCICAP------GFKGIDCSIP--C 443
Query: 364 GEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVC-APVHQVDVGI 540
G I+ C +C C+ D C V C C A H VD I
Sbjct: 444 PLGTYGIN--CSSLC-----------SCKNDAVCSP----VDGSC--TCNAGWHGVDCSI 484
Query: 541 CVTE------CRVDQDCGEGRLCISNGCGRVCFPG-RREGCEHQCREDRDCGSGHQCVRK 699
C + C G C + C PG R E CE C+ D G C +
Sbjct: 485 SCPSGTWGFGCNLTCQCLNGGACNTLDGTCTCAPGWRGEKCEFPCQ---DGTYGLNCAER 541
Query: 700 -GCGHVCAPVHQVGICV-----TECNVDQDCGEGR---QCT-----SNGCGRVCSPVQQE 837
C H G C + + D C EGR C+ NG CSP
Sbjct: 542 CDCSHADGCHSTTGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGAS--CSP---- 595
Query: 838 DVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQCKE 972
D GIC +C G R T+ C R+CSP C C +
Sbjct: 596 DDGIC--------ECAPGFRGTT--CQRICSPGFYGHRCSQTCPQ 630
>ref|XP_002707809.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 281
Score = 57.8 bits (138), Expect = 2e-08
Identities = 68/280 (24%), Positives = 82/280 (29%), Gaps = 26/280 (9%)
Frame = +1
Query: 121 CVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCRE--------DRDCGSGHQCV 276
CVT C C + C C C C CR+ +CG C
Sbjct: 24 CVTTCCQPTCCESS--CCRPCCPPTCYQSSENTCCRTTCRKPTCVTTCCQHNCGGSSCCQ 81
Query: 277 RKGCGHV-CAPVHQVDVGICVMECRVDQDCGEG-------RLCISNGCGRV--CFPVRRR 426
C V C C+ CR DQ CG +C C R C P
Sbjct: 82 PSSCAPVYCHRTCYHPTCCCLPGCR-DQSCGSSCCQPCSRPVCCQTTCCRTTCCKPTCVT 140
Query: 427 EACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGC 606
C+ C G+ C C C P C T C C C++ C
Sbjct: 141 TCCQPTC-------CGNTCCESSCCKPCCPPTCCQTTCCRTTC-----CRP--TCVTTCC 186
Query: 607 GRVCFPGRREGCEHQCREDRDCGSGHQCVRKGC-GHVCAPV-------HQVGICVTECNV 762
C + C+ C E C C C CAPV H C+ C
Sbjct: 187 QPSCC--SKPCCQPTCCESICCHGSSSCGSSCCQASSCAPVYXHRTCYHPTYCCLPGCQ- 243
Query: 763 DQDCGEGRQCTSNGCGRVCSPVQQEDVGICVTECKVDQDC 882
DQ CG + C C PV C+T C C
Sbjct: 244 DQSCG------PSCCQPCCRPVS------CLTTCCRTTSC 271
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,515,730
Number of extensions: 1696002
Number of successful extensions: 7455
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 6779
Number of HSP's successfully gapped: 88
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012519
(1027 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928820.2| PREDICTED: WAP four-disulfide core domain pr... 63 2e-10
Alignment gi|NP_999395.1| tenascin precursor [Sus scrofa]. 63 2e-10
Alignment gi|NP_001116676.1| tenascin-X [Sus scrofa]. 63 3e-10
Alignment gi|XP_003356178.1| PREDICTED: multiple epidermal growth factor-... 62 5e-10
Alignment gi|XP_003126347.2| PREDICTED: prolow-density lipoprotein recept... 59 6e-09
Alignment gi|NP_999112.1| WAP four-disulfide core domain protein 2 precur... 57 1e-08
Alignment gi|XP_003354310.1| PREDICTED: multiple epidermal growth factor-... 57 1e-08
Alignment gi|XP_003129006.2| PREDICTED: NF-X1-type zinc finger protein NF... 56 4e-08
Alignment gi|XP_003131523.2| PREDICTED: keratin-associated protein 4-11-l... 55 6e-08
Alignment gi|XP_003358099.1| PREDICTED: keratin-associated protein 4-7-li... 54 2e-07
>ref|XP_001928820.2| PREDICTED: WAP four-disulfide core domain protein 3 isoform 1 [Sus
scrofa].
Length = 113
Score = 63.2 bits (152), Expect = 2e-10
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Frame = +1
Query: 640 CEHQCREDRDCGSGHQCVRKGCGHVC-----------APVHQVGICVTECNVDQDCGEGR 786
CE C D C GH+C GCGH C P VG C+ C VD++C G
Sbjct: 15 CEELCDGDASCPQGHKCCSTGCGHACRGDIKGGRGGDCPNILVGPCIVSCWVDENCQAGE 74
Query: 787 QCTSNGCGRVC 819
+C +GC R C
Sbjct: 75 KCCKSGCSRFC 85
Score = 62.0 bits (149), Expect = 5e-10
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Frame = +1
Query: 223 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVMECRVDQDCGEGR 375
CE C D C GH+C GCGH C + VG C++ C VD++C G
Sbjct: 15 CEELCDGDASCPQGHKCCSTGCGHACRGDIKGGRGGDCPNILVGPCIVSCWVDENCQAGE 74
Query: 376 LCISNGCGRVC 408
C +GC R C
Sbjct: 75 KCCKSGCSRFC 85
Score = 61.6 bits (148), Expect = 7e-10
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Frame = +1
Query: 433 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECRVDQDCGEGR 585
CE C D C GH+C GCGH C + VG C+ C VD++C G
Sbjct: 15 CEELCDGDASCPQGHKCCSTGCGHACRGDIKGGRGGDCPNILVGPCIVSCWVDENCQAGE 74
Query: 586 LCISNGCGRVC 618
C +GC R C
Sbjct: 75 KCCKSGCSRFC 85
Score = 55.5 bits (132), Expect = 5e-08
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Frame = +1
Query: 742 CVTECNVDQDCGEGRQCTSNGCGRVC---------SPVQQEDVGICVTECKVDQDCGEGR 894
C C+ D C +G +C S GCG C VG C+ C VD++C G
Sbjct: 15 CEELCDGDASCPQGHKCCSTGCGHACRGDIKGGRGGDCPNILVGPCIVSCWVDENCQAGE 74
Query: 895 RCTSNGCGRVC 927
+C +GC R C
Sbjct: 75 KCCKSGCSRFC 85
>ref|NP_999395.1| tenascin precursor [Sus scrofa].
Length = 1746
Score = 63.2 bits (152), Expect = 2e-10
Identities = 79/287 (27%), Positives = 98/287 (34%), Gaps = 21/287 (7%)
Frame = +1
Query: 118 ICVTECK-----VDQDCGAGRRCTSNGCGRVCSP---IRRREACEHQCREDRDCGSGHQC 273
+C+ C V+ +C T CG + P R C D G C
Sbjct: 283 LCLHNCHGRGRCVENECVCDEGFTGEDCGELICPKDCFDRGRCINGTCYCDEGF-EGEDC 341
Query: 274 VRKGCGHVCAPVHQVDVGICVM-ECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQCR 450
R C H C + + G CV E DC E R C C R + +C
Sbjct: 342 GRLACPHGCRGRGRCEEGQCVCDEGFAGADCSERR------CPSDCH--NRGRCLDGRCE 393
Query: 451 EDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVT-ECRVDQDCGEGRLCISNGCGRV-CFP 624
D D G C C C+ + G CV E R +DC + R C ++ GR C
Sbjct: 394 CD-DGFEGEDCGELRCPGGCSGHGRCVNGQCVCDEGRTGEDCSQLR-CPNDCHGRGRCVQ 451
Query: 625 GRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNG 804
GR E CEH + G+ C C H C HQ G CV V D G C
Sbjct: 452 GRCE-CEHGFQ-------GYDCSEMSCPHDC---HQHGRCVNGMCVCDDGYTGEDCRELR 500
Query: 805 CGRVCSPVQQEDVGICVTE----------CKVDQDCGEGRRCTSNGC 915
C CS + G CV E DC RC + C
Sbjct: 501 CPGDCSQRGRCVDGRCVCEHGFAGPDCADLACPSDCHGRGRCVNGQC 547
Score = 57.4 bits (137), Expect = 1e-08
Identities = 88/320 (27%), Positives = 109/320 (34%), Gaps = 44/320 (13%)
Frame = +1
Query: 145 QDCGAGRRCTSNGC-------GRVCSPIRRREACEHQCREDRDCGSGHQCV------RKG 285
+DC RC + C G C R AC H CR C G QCV
Sbjct: 317 KDCFDRGRCINGTCYCDEGFEGEDCG----RLACPHGCRGRGRCEEG-QCVCDEGFAGAD 371
Query: 286 CGHVCAPVHQVDVGICVM-ECRVD-----QDCGEGRL---------CISNGCGRVCFPVR 420
C P + G C+ C D +DCGE R C++ C VC R
Sbjct: 372 CSERRCPSDCHNRGRCLDGRCECDDGFEGEDCGELRCPGGCSGHGRCVNGQC--VCDEGR 429
Query: 421 RREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISN 600
E C Q R DC +CV+ C C Q G +E DC + C++
Sbjct: 430 TGEDCS-QLRCPNDCHGRGRCVQGRCE--CEHGFQ---GYDCSEMSCPHDCHQHGRCVNG 483
Query: 601 GCGRVCFPGRREGCEHQCREDR---DCGSGHQCVRKGC-------GHVCAPVHQVGICVT 750
C VC G CRE R DC +CV C G CA + C +
Sbjct: 484 MC--VCDDGYTG---EDCRELRCPGDCSQRGRCVDGRCVCEHGFAGPDCADL----ACPS 534
Query: 751 ECNVDQDCGEGRQC------TSNGCGRVCSPVQQEDVGICVTECKVDQDCGEGRRCTSNG 912
+C+ C G QC T CG+ P G CV V + G C
Sbjct: 535 DCHGRGRCVNG-QCVCHEGFTGKDCGQRRCPGDCHGQGRCVDGQCVCHEGFTGLDCGQRS 593
Query: 913 CGRVCSPVQQKEACELQCKE 972
C CS Q + C E
Sbjct: 594 CPNDCSNWGQCVSGRCICNE 613
Score = 55.8 bits (133), Expect = 4e-08
Identities = 85/313 (27%), Positives = 116/313 (37%), Gaps = 38/313 (12%)
Frame = +1
Query: 151 CGAGRRCTSNGCGRVCSPIRRREAC-EHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVG 327
C ++ GCG VC P + C E +C +C QCV C VC ++ G
Sbjct: 161 CSGRGNFSTEGCGCVCEPGWKGPNCSEPEC--PSNCHLRGQCVDGQC--VC---NEGFTG 213
Query: 328 ICVMECRVDQDCGEGRLCISNGCGRVCFPVR-----RREACEHQCREDRD-CGSGHQCVR 489
+ DC + C++ C VCF RE C C E+ C G +
Sbjct: 214 EDCSQLACPSDCNDQGKCVNGVC--VCFEGYSGVDCSRETCPVPCSEEHGRCVDGRCVCQ 271
Query: 490 KG-CGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPG-RREGC-EHQCRE 660
+G G C + +C+ C G GR C+ N C VC G E C E C
Sbjct: 272 EGFAGEDC------NEPLCLHNCH-----GRGR-CVENEC--VCDEGFTGEDCGELIC-- 315
Query: 661 DRDCGSGHQCVRKGC-------GHVCAPVHQVGICVTECNVDQDCGEGR-QCTSNGCGRV 816
+DC +C+ C G C + C C C EG+ C G
Sbjct: 316 PKDCFDRGRCINGTCYCDEGFEGEDCGRL----ACPHGCRGRGRCEEGQCVCDEGFAGAD 371
Query: 817 CS----PVQQEDVGICVT-ECKVD-----QDCGEGR---------RCTSNGCGRVCSPVQ 939
CS P + G C+ C+ D +DCGE R RC + C VC +
Sbjct: 372 CSERRCPSDCHNRGRCLDGRCECDDGFEGEDCGELRCPGGCSGHGRCVNGQC--VCDEGR 429
Query: 940 QKEAC-ELQCKED 975
E C +L+C D
Sbjct: 430 TGEDCSQLRCPND 442
>ref|NP_001116676.1| tenascin-X [Sus scrofa].
Length = 4137
Score = 62.8 bits (151), Expect = 3e-10
Identities = 83/298 (27%), Positives = 102/298 (34%), Gaps = 38/298 (12%)
Frame = +1
Query: 151 CGAGRRCTSNGCGRVCSPIRRREAC-EHQCREDRDCGSGHQCVRKGCGHVCAPVH---QV 318
C RC C VC P E C C DCG G +CV C VC P +
Sbjct: 308 CSQKGRCEDGRC--VCDPGYTGEDCGSRSC--PWDCGEGGRCVDGRC--VCWPGYAGEDC 361
Query: 319 DVGICVMECRVDQDCGEGR-LCISNGCGRVCFPVRRREACEHQCR-EDRDCG-----SGH 477
C +CR C +G +C + G C C + R ED C SG
Sbjct: 362 STRTCPRDCRGRGRCEDGECICNAGYSGDDCGVRSCPGDCNQRGRCEDGRCVCWPGYSGP 421
Query: 478 QCVRKGCGHVCAPVHQVDVGICVTECRVD-QDCGEGRLCISNGCGR--------VCFPGR 630
C + C C + + G+CV +DCG R C + GR VC+PG
Sbjct: 422 DCGARACPRDCRGRGRCENGVCVCNAGYSGEDCGV-RSCPGDCLGRGRCENGRCVCWPGY 480
Query: 631 R------EGCEHQCREDRDCGSGHQCVRKG-----CGHVCAPVH-------QVGICVTEC 756
C CR C G G CG P + G+C+ C
Sbjct: 481 TGRDCGTRACPGDCRGRGRCVDGRCVCNPGFTGEDCGSHRCPGDCRGRGRCEDGVCL--C 538
Query: 757 NVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCS 930
+V EG+ C C C Q G CV E D EG C C R CS
Sbjct: 539 DVGY---EGKDCGVRSCPGGCRGRGQCVEGRCVCE-----DGYEGEDCAIRRCPRDCS 588
Score = 51.2 bits (121), Expect = 9e-07
Identities = 64/213 (30%), Positives = 78/213 (36%), Gaps = 7/213 (3%)
Frame = +1
Query: 358 DCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVD-- 531
DC + CI C +CFP +C DC +CV+ C VC D
Sbjct: 183 DCNDQGRCIRGRC--LCFPGYTGPSCSWPSCPG-DCHGRGRCVKGVC--VCRAGFSGDDC 237
Query: 532 -VGICVTECRVDQDCGEGR-LCISNGCGRVCFPGRREGCEHQCREDRDCGSGHQCVRKGC 705
+ C C C +GR +C S G C G R C RDC +C C
Sbjct: 238 SLRSCPRGCSQRGRCEDGRCVCDSGYTGEDC--GVRS-----C--PRDCSQRGRCQDGRC 288
Query: 706 GHVCAPVHQVGIC-VTECNVDQDCGEGRQCTSNGCGRVCSP-VQQEDVGICVTECKVDQD 879
VC P + C V C + C + +C C VC P ED G D
Sbjct: 289 --VCNPGYTGEDCGVRSC--PRGCSQKGRCEDGRC--VCDPGYTGEDCG----SRSCPWD 338
Query: 880 CGEGRRCTSNGCGRVCSPVQQKEACELQ-CKED 975
CGEG RC C VC P E C + C D
Sbjct: 339 CGEGGRCVDGRC--VCWPGYAGEDCSTRTCPRD 369
>ref|XP_003356178.1| PREDICTED: multiple epidermal growth factor-like domains protein
6-like [Sus scrofa].
Length = 1982
Score = 62.0 bits (149), Expect = 5e-10
Identities = 80/300 (26%), Positives = 103/300 (34%), Gaps = 27/300 (9%)
Frame = +1
Query: 151 CGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQC-------------VRKGCG 291
C AG +GC + C P R CE C C +G C + CG
Sbjct: 1634 CAAGYH--GSGCRQRCPPGRFGPGCEQLCA----CLNGGSCDPATGACRCPAGFLGTDCG 1687
Query: 292 HVCAPVHQVDVGICVMECRVDQDCGEGRLC--ISNGCGRVCFPVRRREACEHQCREDR-- 459
C P + +G C CR CG+G C ++ C C P R CEH C ++R
Sbjct: 1688 LAC-PHGRFGLG-CAHVCR----CGQGAACDPVTGTC--TCPPGRTGVHCEHGCPQNRFG 1739
Query: 460 -DCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRRE 636
+C C G H +G C + C GR C C +
Sbjct: 1740 VNCEGTCSCRNGGLCHATNGSCSCGLGWTGPHCELA--CPAGRY--GAACHLECSCRNQG 1795
Query: 637 GCEHQCREDRDCGSGHQCVRKGCGHVC-APVHQVGICVT-ECNVDQDCG--EGRQCTSNG 804
CE C G + C H C + H G T EC C GR G
Sbjct: 1796 TCEPASGA---CHCGPGFYGQACEHPCPSGFHGAGCRGTCECQHGAPCDPVSGRCLCPAG 1852
Query: 805 -----CGRVCSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQCK 969
C R C P G C+ DCG+G C S G +C P + C+L C+
Sbjct: 1853 FHGKFCERGCEP------GSFGEGCRQRCDCGDGVPCDSVTGGCLCPPGRTGTTCDLGCR 1906
Score = 55.1 bits (131), Expect = 6e-08
Identities = 84/345 (24%), Positives = 111/345 (32%), Gaps = 56/345 (16%)
Frame = +1
Query: 100 QAVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVR 279
+A G +C +C AG C + +C P R+ C C GH C +
Sbjct: 1344 RACPAGFFGVDCHHACNCSAGASCDAVSGSCLCPPGRQGPRCSQTCPAHT---YGHNCSQ 1400
Query: 280 K-GC--GHVCAPVH-QVDVG------ICVMECRV---DQDCGEGRLCISNG--------- 393
C G C PVH Q G C+ C +C LC + G
Sbjct: 1401 VCSCSNGASCDPVHGQCRCGPGWTGPACLQACPAGLYGDNCQHSCLCQNGGTCDPVSGHC 1460
Query: 394 ----------CGRVCFPVRRREACEHQCREDR----DCGSGH-QCVRKGCGHVC-APVHQ 525
C + C P +C+H CR D +GH C+ G C +P +
Sbjct: 1461 SCPEGWAGLACEKECLPGLFGASCQHSCRCLNGGLCDPRTGHCLCLAGWTGDECQSPCAE 1520
Query: 526 VDVGICVTECRVDQDCG----------EGRLC----ISNGCGRVCFPG-RREGCEHQCRE 660
G+ R D+ C G LC + C C PG EGC C+
Sbjct: 1521 GTFGV-----RCDEPCACRWEAAATRQRGLLCPPGWRARMCPTACPPGWFGEGCAQHCQ- 1574
Query: 661 DRDCGSGHQCVRKGCGHVCAPVHQVGICVTEC---NVDQDCGEGRQCTSNGCGRVCSPVQ 831
C G C C P C C + CG+ QC G + C P
Sbjct: 1575 ---CPPGAACHHVSGECHCPPGFTGPGCEQACPPGTFGESCGQKCQCP--GENQACHPAS 1629
Query: 832 QEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQC 966
G CV C G +GC + C P + CE C
Sbjct: 1630 ----GACV--------CAAGYH--GSGCRQRCPPGRFGPGCEQLC 1660
Score = 50.8 bits (120), Expect = 1e-06
Identities = 67/269 (24%), Positives = 96/269 (35%), Gaps = 26/269 (9%)
Frame = +1
Query: 121 CVTECKVDQDCGAGRRCTSN--------GCGRVCSPIRRREACEHQCREDRDCGSGHQCV 276
C E ++ +D G+RC GC C +R R CE C +G+
Sbjct: 711 CRPEFQLQED---GKRCVRRNPCTDRNAGCMHTCRLLRGRAHCE--------CHAGY--- 756
Query: 277 RKGCGH-VCAPVHQVDVGI--CVMECRVDQDCGEGRLCISNGC------GRVCFPVRRRE 429
R H C V + G+ C C Q + C+ N GR C+ +
Sbjct: 757 RLAADHKACEDVDECATGLAQCAHSCLNTQGSFK---CVCNAGYELGADGRQCYRIEMEI 813
Query: 430 ACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLC---ISN 600
+ C E + G H C G +C H ++G C DC + C +N
Sbjct: 814 V--NSC-EAANGGCSHGCSHSSEGPICTCPHGYELGEDQKTCIDVDDCADSPCCQQVCTN 870
Query: 601 GCGRV---CFPGRR---EGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNV 762
G C+ G R +GC C + +C SGH GC H C + G C V
Sbjct: 871 SPGGYECSCYAGYRLSTDGC--GCEDVDECASGH----GGCEHHC--TNLAGSFQCSCEV 922
Query: 763 DQDCGEGRQCTSNGCGRVCSPVQQEDVGI 849
E R R CS ++ +VG+
Sbjct: 923 GYRLDEDR--------RGCSHLEMTEVGL 943
Score = 49.3 bits (116), Expect = 3e-06
Identities = 72/291 (24%), Positives = 104/291 (35%), Gaps = 13/291 (4%)
Frame = +1
Query: 121 CVTECKVDQ-DCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHV 297
C EC++ G + CT G C PI +C ++C +G++ K CG
Sbjct: 1168 CQDECRLGFFGPGCLQTCTCPP-GVACDPI------SGEC--GKECPAGYR--GKDCGQE 1216
Query: 298 CAPVHQVDVGICVMECRVDQDCGEGRLC--ISNGCGRVCFPVRRREACEHQCREDRDCGS 471
C G + C C G C ++ C +C P R + C +C E R G
Sbjct: 1217 CP------AGTFGLNCSGSCSC-RGAPCDPVTGQC--LCPPGRTGDDCGAECPEGR-WGL 1266
Query: 472 GHQCVRKGCGH--VCAPVHQVDVGICV-----TECRVDQDCGEGRLCISNGCGRVCFPGR 630
G Q + C H C P + G C+ T R C +G GCG+ C
Sbjct: 1267 GCQEICPACEHGATCEP----ETGACLCRPGFTGSRCQDGCPQGHY--GPGCGQQC---- 1316
Query: 631 REGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCG 810
CEH D G+ C G C G +C+ +C G C +
Sbjct: 1317 --QCEHGAACDHVSGAC-TCPAGWRGTFCERACPAGFFGVDCHHACNCSAGASCDAVSGS 1373
Query: 811 RVCSPVQQEDVGICVTECKV---DQDCGEGRRCTSNGCGRVCSPVQQKEAC 954
+C P +Q C C +C + C++ G C PV + C
Sbjct: 1374 CLCPPGRQGP--RCSQTCPAHTYGHNCSQVCSCSN---GASCDPVHGQCRC 1419
Score = 48.1 bits (113), Expect = 8e-06
Identities = 74/302 (24%), Positives = 101/302 (33%), Gaps = 22/302 (7%)
Frame = +1
Query: 139 VDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDR----DCGSGH-QCVRKGCGHVC- 300
V C C + C P +C+H CR D +GH C+ G C
Sbjct: 1456 VSGHCSCPEGWAGLACEKECLPGLFGASCQHSCRCLNGGLCDPRTGHCLCLAGWTGDECQ 1515
Query: 301 APVHQVDVGICVMECRVDQDCG-EGRLCISNGCGRVCFPVRRREACEHQCRED---RDCG 468
+P + G+ R D+ C + G +C P R C C C
Sbjct: 1516 SPCAEGTFGV-----RCDEPCACRWEAAATRQRGLLCPPGWRARMCPTACPPGWFGEGCA 1570
Query: 469 SGHQCVR-KGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVC-FPGRREGC 642
QC C HV H G C +Q C G CG+ C PG + C
Sbjct: 1571 QHCQCPPGAACHHVSGECH-CPPGFTGPGC--EQACPPGTF--GESCGQKCQCPGENQAC 1625
Query: 643 EHQCREDRDCGSGHQCVRKGCGHVCAP------VHQVGICVTECNVDQDCGEGRQCTSN- 801
H C +G+ GC C P Q+ C+ + D G R C +
Sbjct: 1626 -HPASGACVCAAGYH--GSGCRQRCPPGRFGPGCEQLCACLNGGSCDPATGACR-CPAGF 1681
Query: 802 ---GCGRVCSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQCKE 972
CG C P + +G C C+ CG+G C C P + CE C +
Sbjct: 1682 LGTDCGLAC-PHGRFGLG-CAHVCR----CGQGAACDPVTGTCTCPPGRTGVHCEHGCPQ 1735
Query: 973 DR 978
+R
Sbjct: 1736 NR 1737
>ref|XP_003126347.2| PREDICTED: prolow-density lipoprotein receptor-related protein 1-like
[Sus scrofa].
Length = 1598
Score = 58.5 bits (140), Expect = 6e-09
Identities = 81/333 (24%), Positives = 110/333 (33%), Gaps = 45/333 (13%)
Frame = +1
Query: 115 GICVTE---CKVDQDCGAGR---RCTSNGC---GRVCSPIRRREACEHQCREDRDCGSGH 267
GIC C D DC C + C C+ R +C +CG G
Sbjct: 438 GICTNPAFICDGDNDCQDNSDEANCDIHVCLPSQFKCTNTNRCIPGIFRCNGQDNCGDGE 497
Query: 268 QCVRKGCGHVCAPVHQVDVGIC------VMECRVDQDCGEGR----LCISNGCGRVCFPV 417
+ C V +Q I V C D DC +G C CG F
Sbjct: 498 D--ERDCPEVTCAPNQFQCSITKRCIPRVWVCDRDNDCVDGSDEPANCTQMTCGVDEFRC 555
Query: 418 RRREAC---EHQCREDRDCGSGHQCVRKGCGH-VCAPVH-QVDVGICVT---ECRVDQDC 573
+ C +C + DCG G ++ C C P + CV +C D DC
Sbjct: 556 KDSGRCIPARWKCDGEDDCGDGSDEPKEECDERTCEPYQFRCKNNRCVPGRWQCDYDNDC 615
Query: 574 GEG---RLCISNGCGRV---CFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVH-- 729
G+ C C C GR +C D DC G K C C
Sbjct: 616 GDNSDEESCTPRPCSESEFSCANGRCIAGRWKCDGDHDCADGSD--EKDCTPRCDMDQFQ 673
Query: 730 -QVGICVT---ECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVG--IC---VTECKVDQDC 882
+ G C+ C+ D DC +G + G P+ + +C +C + DC
Sbjct: 674 CKSGHCIPLRWRCDADADCMDGSDEEACSTGVRTCPLDEFQCNNTLCKPLAWKCDGEDDC 733
Query: 883 GEGRRCTSNGCGR-VCSPVQQKEACELQCKEDR 978
G+ C R VC P + +CK DR
Sbjct: 734 GDNSDENPEECARFVCPPNR-----PFRCKNDR 761
Score = 49.7 bits (117), Expect = 3e-06
Identities = 80/341 (23%), Positives = 109/341 (31%), Gaps = 67/341 (19%)
Frame = +1
Query: 109 DVGICVT---ECKVDQDCGAGRRCTSNGCG-RVCSPIRRREACEH--------QCREDRD 252
D G C+ +C + DCG G C R C P + R C++ QC D D
Sbjct: 557 DSGRCIPARWKCDGEDDCGDGSDEPKEECDERTCEPYQFR--CKNNRCVPGRWQCDYDND 614
Query: 253 CGSG---HQCVRKGCGHV---CAPVHQVDVGICVM---ECRVDQDCGEGR---------- 375
CG C + C CA G C+ +C D DC +G
Sbjct: 615 CGDNSDEESCTPRPCSESEFSCAN------GRCIAGRWKCDGDHDCADGSDEKDCTPRCD 668
Query: 376 ----LCISNGCGRVCFPVRRREACEHQCREDRDC--GSGHQCVRKGCGHVCAPVHQVDVG 537
C S C P+R R C D DC GS + G Q +
Sbjct: 669 MDQFQCKSGHC----IPLRWR------CDADADCMDGSDEEACSTGVRTCPLDEFQCNNT 718
Query: 538 IC---VTECRVDQDCGEGRLCISNGCGR-VCFPGRREGCEH---------QCREDRDCGS 678
+C +C + DCG+ C R VC P R C++ QC +CG
Sbjct: 719 LCKPLAWKCDGEDDCGDNSDENPEECARFVCPPNRPFRCKNDRVCLWIGRQCDGTDNCGD 778
Query: 679 G---HQCVRKGCGHVCAPVHQVGICVTE--------CNVDQDCGEGRQCTSNGCGRVCSP 825
G C + +C + CN+ DCG+G
Sbjct: 779 GTDEEDCEPPTAQSPHCKDKKEFLCRNQRCLSSSLRCNMFDDCGDGS------------- 825
Query: 826 VQQEDVGI------CVTECKVDQDCGEGRRCTSNGCGRVCS 930
+ED I C T + CG+ RC C+
Sbjct: 826 -DEEDCSIDPKLTSCATNASI---CGDEARCVRTEKAAYCA 862
>ref|NP_999112.1| WAP four-disulfide core domain protein 2 precursor [Sus scrofa].
Length = 123
Score = 57.4 bits (137), Expect = 1e-08
Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Frame = +1
Query: 505 VCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVC-FPGRREGCEHQCREDRDCGSG 681
VC P +VD+ C EC D DC + C GC +C P +EG
Sbjct: 34 VC-PAVEVDMN-CTQECLSDADCADNLKCCKAGCVTICQMPNEKEG-------------- 77
Query: 682 HQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRV 816
C V Q+G+C+ +C VD C +C NGCG+V
Sbjct: 78 ------SCPQVDIAFPQLGLCLDQCQVDSQCPGQLKCCRNGCGKV 116
Score = 55.5 bits (132), Expect = 5e-08
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Frame = +1
Query: 712 VCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQED------------VGICV 855
VC V C EC D DC + +C GC +C +++ +G+C+
Sbjct: 34 VCPAVEVDMNCTQECLSDADCADNLKCCKAGCVTICQMPNEKEGSCPQVDIAFPQLGLCL 93
Query: 856 TECKVDQDCGEGRRCTSNGCGRV 924
+C+VD C +C NGCG+V
Sbjct: 94 DQCQVDSQCPGQLKCCRNGCGKV 116
Score = 53.5 bits (127), Expect = 2e-07
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Frame = +1
Query: 193 VCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVH-------QVDV-----GICV 336
VC + C +C D DC +C + GC +C + QVD+ G+C+
Sbjct: 34 VCPAVEVDMNCTQECLSDADCADNLKCCKAGCVTICQMPNEKEGSCPQVDIAFPQLGLCL 93
Query: 337 MECRVDQDCGEGRLCISNGCGRV 405
+C+VD C C NGCG+V
Sbjct: 94 DQCQVDSQCPGQLKCCRNGCGKV 116
Score = 53.5 bits (127), Expect = 2e-07
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Frame = +1
Query: 403 VCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVH-------QVDV-----GICV 546
VC V C +C D DC +C + GC +C + QVD+ G+C+
Sbjct: 34 VCPAVEVDMNCTQECLSDADCADNLKCCKAGCVTICQMPNEKEGSCPQVDIAFPQLGLCL 93
Query: 547 TECRVDQDCGEGRLCISNGCGRV 615
+C+VD C C NGCG+V
Sbjct: 94 DQCQVDSQCPGQLKCCRNGCGKV 116
>ref|XP_003354310.1| PREDICTED: multiple epidermal growth factor-like domains protein 10
[Sus scrofa].
Length = 1152
Score = 57.4 bits (137), Expect = 1e-08
Identities = 72/309 (23%), Positives = 98/309 (31%), Gaps = 31/309 (10%)
Frame = +1
Query: 133 CKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDR---------DCGSGHQCVRKG 285
C + C G C + C+P R E CE C++ DC C
Sbjct: 432 CNLTCQCLNGGACNTLDGTCTCAPGWRGEKCEFPCQDGTYGLHCAERCDCSHADGC-HPT 490
Query: 286 CGHV-CAP----VHQVDV---GICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEH 441
GH C P VH V G C + C G C + C P R C+
Sbjct: 491 TGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 550
Query: 442 QCREDRDCGSGHQCVRK--GCGHVCAPVHQVDVGIC-----VTECRVDQDCGEGRLCISN 600
C GH+C + C H P H + G+C T ++ C GR
Sbjct: 551 ICSPGF---YGHRCSQTCPQCVHSSGPCHHI-TGLCDCLPGFTGALCNEVCPSGRF--GK 604
Query: 601 GCGRVCFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGE 780
C +C C DR C + C C P H C+ CN C
Sbjct: 605 NCAGICTCTNNGTCNPI---DRSCQCYPGWIGSDCSQPCPPAHWGPNCIHTCN----CHN 657
Query: 781 GRQCTSNGCGRVCSP-------VQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQ 939
G C++ C+P Q+ +G +C + C G C C
Sbjct: 658 GAFCSAYDGECKCTPGWTGLYCTQRCPLGFYGKDCALICRCQNGADCDHISGQCTCRTGF 717
Query: 940 QKEACELQC 966
+ CE +C
Sbjct: 718 MGKHCEQKC 726
Score = 51.6 bits (122), Expect = 7e-07
Identities = 73/279 (26%), Positives = 92/279 (32%), Gaps = 16/279 (5%)
Frame = +1
Query: 184 CGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVMECRVDQDC 363
C CSP EAC+ C C +G C CAP G ++C
Sbjct: 333 CNETCSPGFYGEACQQIC----SCQNGADCDSVTGKCTCAP------GFKGIDCSTPCSL 382
Query: 364 GEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGS-GHQCVRKGCGHVCAPVHQVDVGI 540
G + S+ CG C+ D C C K H G
Sbjct: 383 GTYGVNCSSLCG---------------CKNDAMCSPVDGSCTCKAGWHGVDCSISCPSGT 427
Query: 541 CVTECRVDQDCGEGRLCISNGCGRVCFPG-RREGCEHQCREDRDCGSGHQCVRK-GCGHV 714
C + C G C + C PG R E CE C+ D G C + C H
Sbjct: 428 WGFGCNLTCQCLNGGACNTLDGTCTCAPGWRGEKCEFPCQ---DGTYGLHCAERCDCSHA 484
Query: 715 --CAPVHQVGICV---TECNVDQDCGEGR---QCT-----SNGCGRVCSPVQQEDVGICV 855
C P C+ + + D C EGR C+ NG CSP D GIC
Sbjct: 485 DGCHPTTGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGAS--CSP----DDGIC- 537
Query: 856 TECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQCKE 972
+C G R T+ C R+CSP C C +
Sbjct: 538 -------ECAPGFRGTT--CQRICSPGFYGHRCSQTCPQ 567
Score = 48.5 bits (114), Expect = 6e-06
Identities = 79/298 (26%), Positives = 100/298 (33%), Gaps = 25/298 (8%)
Frame = +1
Query: 139 VDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQC--VRKGC-------G 291
V +C T C +C P + CE +C C +G C V C G
Sbjct: 143 VTGECRCPPGYTGAFCEDLCPPGKHGPQCEQRC----PCQNGGVCHHVTGECPCPPGWLG 198
Query: 292 HVCA-PVHQVDVG-ICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQCREDR-- 459
VC P + G C EC+ C G C + C P E C+ +C
Sbjct: 199 TVCGQPCPEGRFGKNCSQECQ----CHNGGTCDAATGQCHCSPGYTGERCQDECPVGTYG 254
Query: 460 -DCGSGHQCVRKG-CGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCG------RV 615
C QCV G C HV G C+ E D E RLC G
Sbjct: 255 VGCAETCQCVNGGKCYHVS--------GSCLCEAGFAGDRCEARLCPEGLYGIKCDKHCP 306
Query: 616 CFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCT 795
C P C H + C G + C C+P C C+ C G C
Sbjct: 307 CHPDNTHSC-HPMSGECACKPGWSGLY--CNETCSPGFYGEACQQICS----CQNGADCD 359
Query: 796 SNGCGRVCSPVQQEDVGI-CVTECKVDQDCGEGRRCTS-NGC--GRVCSPVQQKEACE 957
S C+P + GI C T C + G C+S GC +CSPV C+
Sbjct: 360 SVTGKCTCAPGFK---GIDCSTPCSLGT---YGVNCSSLCGCKNDAMCSPVDGSCTCK 411
>ref|XP_003129006.2| PREDICTED: NF-X1-type zinc finger protein NFXL1 [Sus scrofa].
Length = 911
Score = 55.8 bits (133), Expect = 4e-08
Identities = 89/358 (24%), Positives = 118/358 (32%), Gaps = 81/358 (22%)
Frame = +1
Query: 142 DQDCGAGRRCTSNGCGRVC-------SPIRRREACEHQ-------CRED-RDCGSGHQCV 276
DQ CG C ++ C +VC P + C Q C ED CG V
Sbjct: 362 DQVCGKTLSCRNHTCEQVCHVGACGDCPRSGKRFCPCQKSKFSLPCTEDVPTCGDSCDKV 421
Query: 277 RKGCG-HVCAP-VHQVDVGICVMECRVDQDCGEGRLCISNGCGRVC--FPVRRREACEHQ 444
+ CG H C+ H+ C E V++ C CG+ P + CE +
Sbjct: 422 LE-CGIHRCSQRCHRGPCETCRQE--VEKHC---------RCGKHTKRMPCHKPYLCETK 469
Query: 445 CREDRDCGSGHQCVRKGCGHVCAPVHQ----------------------------VDVGI 540
C + RDC HQC RK C C P Q VDV
Sbjct: 470 CVKMRDC-QKHQCRRKCCPGNCPPCDQNCGRTLGCRNHKCPSVCHRGSCYPCPETVDVKC 528
Query: 541 CVTECRVDQDCGEGRLCISNGCGRVCFPGRREGCEHQCREDRDCGSGH--------QCVR 696
+V CG R C C R C H +E C G Q V
Sbjct: 529 SCGNTKVTVPCGRERTTRPPKCKEQC--SRPPTCHHASQEKHRCHFGSCPPCHQPCQKVL 586
Query: 697 KGCGHVC-APVHQVGICVTECNVDQDCGEGRQ-------CTSNGCGRVCSPVQQEDVG-- 846
+ CGH+C AP H + V + Q G Q T+ C P+ E +G
Sbjct: 587 EKCGHLCPAPCHDQAL-VKQTGKHQPTGPWEQPSEPAFIQTALPCPPCQVPIPMECLGKH 645
Query: 847 -------ICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACE---------LQCKE 972
V + CG C ++ C + C V + +C LQC+E
Sbjct: 646 EVSPLPCHAVGPYSCTRVCGRTLDCQNHTCMKECHQVTEIGSCTDKNKAGPECLQCEE 703
>ref|XP_003131523.2| PREDICTED: keratin-associated protein 4-11-like [Sus scrofa].
Length = 170
Score = 55.1 bits (131), Expect = 6e-08
Identities = 59/216 (27%), Positives = 71/216 (32%), Gaps = 5/216 (2%)
Frame = +1
Query: 175 SNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVMECRVD 354
S+ CG VCS D+ CG C C C C C V
Sbjct: 3 SSCCGSVCS--------------DQGCGQD-LCQETCCSPSCCQTTCCRTTCCRPSCGVS 47
Query: 355 QDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDV 534
C R CIS+GC C + C+ C + R C S C R C
Sbjct: 48 TCC-RPRCCISSGCRPQCC---QSVCCQPTCSQPRCCISS--CCRPQC------------ 89
Query: 535 GICVTECRVDQDCGEGRLCISNGCGRVCFPGRREGCEHQCREDRDCGSG--HQ--CVRKG 702
C + C C R CIS+GC C C+ C CGS H C+R
Sbjct: 90 --CQSSC-CQPSCCRPRCCISSGCRPPC-------CQPSCCGSSPCGSSCCHPCCCLRPV 139
Query: 703 CGHV-CAPVHQVGICVTECNVDQDCGEGRQCTSNGC 807
CG V C + CV C C S+ C
Sbjct: 140 CGRVSCHTTYYRPTCVI-----STCPRPTCCASSCC 170
>ref|XP_003358099.1| PREDICTED: keratin-associated protein 4-7-like [Sus scrofa].
Length = 170
Score = 53.5 bits (127), Expect = 2e-07
Identities = 59/216 (27%), Positives = 71/216 (32%), Gaps = 5/216 (2%)
Frame = +1
Query: 175 SNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVMECRVD 354
S+ CG VCS D+ CG C C C C C V
Sbjct: 3 SSCCGSVCS--------------DQGCGQD-LCQETCCSPSCCQTTCCRTTCCRPSCGVS 47
Query: 355 QDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDV 534
C R CIS+GC C + C+ C + R C S C R C
Sbjct: 48 TCC-RPRCCISSGCRPQCC---QSVCCQPTCSQPRCCIS--SCCRPPC------------ 89
Query: 535 GICVTECRVDQDCGEGRLCISNGCGRVCFPGRREGCEHQCREDRDCGSG--HQ--CVRKG 702
C + C C + R CIS+ C C C+ C CGS H C+R
Sbjct: 90 --CQSSC-CQPSCSQPRCCISSCCRPQC-------CQPSCCGSSPCGSSCCHPCCCLRPV 139
Query: 703 CGHV-CAPVHQVGICVTECNVDQDCGEGRQCTSNGC 807
CG V C ICV C C S+ C
Sbjct: 140 CGRVSCHTTCYRPICVI-----STCPRPTCCASSCC 170
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,560,274
Number of extensions: 1078818
Number of successful extensions: 4577
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4194
Number of HSP's successfully gapped: 38
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012519
(1027 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028368.2| NFX1-type zinc finger-containing protein 1 [... 77 2e-14
Alignment gi|NP_082237.1| WAP four-disulfide core domain 3 [Mus musculus]. 72 9e-13
Alignment gi|NP_112453.2| tenascin-X [Mus musculus]. 65 9e-11
Alignment gi|NP_032538.2| prolow-density lipoprotein receptor-related pro... 60 2e-09
Alignment gi|NP_001074019.1| WAP four-disulfide core domain protein 8 [Mu... 57 3e-08
Alignment gi|NP_076349.1| keratin-associated protein 5-3 [Mus musculus]. 57 3e-08
Alignment gi|NP_035737.2| tenascin [Mus musculus]. 57 3e-08
Alignment gi|NP_001001979.1| multiple epidermal growth factor-like domain... 56 4e-08
Alignment gi|NP_056624.1| keratin-associated protein 5-4 [Mus musculus]. 55 7e-08
Alignment gi|NP_598682.2| nuclear transcription factor, X-box binding-lik... 54 2e-07
>ref|NP_001028368.2| NFX1-type zinc finger-containing protein 1 [Mus musculus].
Length = 1909
Score = 77.4 bits (189), Expect = 2e-14
Identities = 84/306 (27%), Positives = 108/306 (35%), Gaps = 17/306 (5%)
Frame = +1
Query: 100 QAVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRD---CGSGHQ 270
Q V G C C+ CG + C R C P E QC + C GH+
Sbjct: 1274 QKVPEGGCSRPCEFRLACG-------HVCTRACHPYDSSHK-EFQCMKPCQKVLCQDGHR 1325
Query: 271 CVRKGCGHVCAPVHQVDVGICVMECRVDQ----DCGEGRLCISNGCGRVCFPVRRREACE 438
C C C P QV V +++C Q E C C ++ +R C
Sbjct: 1326 CPNV-CFQECQPC-QVKVPKIILKCGHKQMVPCSMSESEFCCQEPCSKI---LRCGHRCS 1380
Query: 439 HQCRED--RDCGSGHQCVRKGCGHV----CAPVHQVDVGI---CVTECRVDQDCGEGRLC 591
H C ED R C S V CGH C V + G+ C T+C DCG
Sbjct: 1381 HLCGEDCVRLC-SERVTVELKCGHSQLVKCGNVEDIKYGLPVKCTTKCDTTLDCGHP--- 1436
Query: 592 ISNGCGRVCFPGR-REGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQ 768
G CF GR E C+ C+ C H+C ++ C C P + C C V
Sbjct: 1437 -CPGSCHSCFEGRFHERCQQPCKRLLICS--HKC-QEPCTGECPPCQRT--CQNRC-VHS 1489
Query: 769 DCGEGRQCTSNGCGRVCSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKE 948
C CG +CSP CV C RC C ++CS +
Sbjct: 1490 QC-------KKKCGELCSP--------CVEPCVW--------RCQHYQCTKLCSEPCNRP 1526
Query: 949 ACELQC 966
C + C
Sbjct: 1527 PCYVPC 1532
Score = 58.2 bits (139), Expect = 1e-08
Identities = 65/234 (27%), Positives = 83/234 (35%), Gaps = 33/234 (14%)
Frame = +1
Query: 367 EGRLCISNGCGRVCFPVRRREACEHQCREDRD---CGSGHQCVRKGCGHVCAPVHQVDVG 537
E RL + C R C P E QC + C GH+C C C P QV V
Sbjct: 1286 EFRLACGHVCTRACHPYDSSHK-EFQCMKPCQKVLCQDGHRCPNV-CFQECQPC-QVKVP 1342
Query: 538 ICVTECRVDQ----DCGEGRLCISNGCGRVCFPGRREGCEHQCRED--RDCGSGHQCVRK 699
+ +C Q E C C ++ G R C H C ED R C S V
Sbjct: 1343 KIILKCGHKQMVPCSMSESEFCCQEPCSKILRCGHR--CSHLCGEDCVRLC-SERVTVEL 1399
Query: 700 GCGHV----CAPVHQVGI-----CVTECNVDQDCGEGRQCTSNGC--GRVCSPVQQEDVG 846
CGH C V + C T+C+ DCG + + C GR QQ
Sbjct: 1400 KCGHSQLVKCGNVEDIKYGLPVKCTTKCDTTLDCGHPCPGSCHSCFEGRFHERCQQPCKR 1459
Query: 847 ICVTECKVDQDC-GEGRRC------------TSNGCGRVCSPVQQKEACELQCK 969
+ + K + C GE C CG +CSP E C +C+
Sbjct: 1460 LLICSHKCQEPCTGECPPCQRTCQNRCVHSQCKKKCGELCSPC--VEPCVWRCQ 1511
>ref|NP_082237.1| WAP four-disulfide core domain 3 [Mus musculus].
Length = 130
Score = 71.6 bits (174), Expect = 9e-13
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Frame = +1
Query: 433 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECRVDQDCGEGR 585
C+ C D C GH+C GCGH C ++ VG+C+ +C +D++C G
Sbjct: 32 CQELCTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVGLCIVQCMMDENCQSGE 91
Query: 586 LCISNGCGRVCFPG 627
C +GCGR C PG
Sbjct: 92 RCCKSGCGRFCIPG 105
Score = 69.7 bits (169), Expect = 3e-12
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Frame = +1
Query: 223 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVMECRVDQDCGEGR 375
C+ C D C GH+C GCGH C ++ VG+C+++C +D++C G
Sbjct: 32 CQELCTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVGLCIVQCMMDENCQSGE 91
Query: 376 LCISNGCGRVCFP 414
C +GCGR C P
Sbjct: 92 RCCKSGCGRFCIP 104
Score = 69.7 bits (169), Expect = 3e-12
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Frame = +1
Query: 640 CEHQCREDRDCGSGHQCVRKGCGHVC-----------APVHQVGICVTECNVDQDCGEGR 786
C+ C D C GH+C GCGH C P VG+C+ +C +D++C G
Sbjct: 32 CQELCTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVGLCIVQCMMDENCQSGE 91
Query: 787 QCTSNGCGRVCSP 825
+C +GCGR C P
Sbjct: 92 RCCKSGCGRFCIP 104
Score = 64.7 bits (156), Expect = 1e-10
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Frame = +1
Query: 742 CVTECNVDQDCGEGRQCTSNGCGRVC---------SPVQQEDVGICVTECKVDQDCGEGR 894
C C D+ C +G +C S GCG C + VG+C+ +C +D++C G
Sbjct: 32 CQELCTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVGLCIVQCMMDENCQSGE 91
Query: 895 RCTSNGCGRVCSP 933
RC +GCGR C P
Sbjct: 92 RCCKSGCGRFCIP 104
Score = 57.4 bits (137), Expect = 2e-08
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Frame = +1
Query: 541 CVTECRVDQDCGEGRLCISNGCGRVC---FPGRREG---------CEHQCREDRDCGSGH 684
C C D+ C +G C S GCG C G R+G C QC D +C SG
Sbjct: 32 CQELCTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVGLCIVQCMMDENCQSGE 91
Query: 685 QCVRKGCGHVCAP 723
+C + GCG C P
Sbjct: 92 RCCKSGCGRFCIP 104
Score = 53.1 bits (126), Expect = 3e-07
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Frame = +1
Query: 121 CVTECKVDQDCGAGRRCTSNGCGRVC-----------SPIRRREACEHQCREDRDCGSGH 267
C C D+ C G +C S GCG C P C QC D +C SG
Sbjct: 32 CQELCTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVGLCIVQCMMDENCQSGE 91
Query: 268 QCVRKGCGHVCAP 306
+C + GCG C P
Sbjct: 92 RCCKSGCGRFCIP 104
>ref|NP_112453.2| tenascin-X [Mus musculus].
Length = 3126
Score = 65.1 bits (157), Expect = 9e-11
Identities = 76/303 (25%), Positives = 105/303 (34%), Gaps = 44/303 (14%)
Frame = +1
Query: 145 QDCGAGRRCTSNGCGRVC-----SPIRRREACEHQCREDRDCG----------SGHQCVR 279
+DC RC C VC P +C C+ C SG C +
Sbjct: 176 EDCNDQGRCVRGRC--VCFPGYSGPSCSWPSCPGDCQGRGRCVKGVCVCRAGFSGPDCSQ 233
Query: 280 KGCGHVCAPVHQVDVGICVMECRVD-QDCGEGRLCISNGCGRVCFPVRRREACEHQCRED 456
+ C C + + G CV + +DCG C R C +R CE+
Sbjct: 234 RSCPRNCNQRGRCEEGRCVCDPGYSGEDCGV------RSCPRGC---SQRGRCENGLCVC 284
Query: 457 RDCGSGHQCVRKGCGHVCAPVHQVDVGICVTE-------CRVDQ---DCGEGRLCISNGC 606
SG C + C C+ + + G CV + C + DCG+G C+ C
Sbjct: 285 NPGYSGEDCGVRNCPRGCSQRGRCEDGRCVCDPGYSGEDCSMRTCPWDCGDGGRCVDGRC 344
Query: 607 GRVCFPG------RREGCEHQCREDRDCGSGHQCVRKG-CGHVCAPVHQVGICVTECNVD 765
VC+PG C CR C G G G C V C +CN
Sbjct: 345 --VCWPGYSGEDCSTRTCPRDCRGRGRCEDGECICDAGYSGDDCG----VRSCPGDCNQR 398
Query: 766 QDCGEGR----------QCTSNGCGRVCSPVQQEDVGICVTECKVD-QDCGEGRRCTSNG 912
C +GR C++ C R C + + G+CV +DCG R C +
Sbjct: 399 GHCEDGRCVCWPGYTGADCSTRACPRDCRGRGRCEDGVCVCHAGYSGEDCGV-RSCPGDC 457
Query: 913 CGR 921
GR
Sbjct: 458 RGR 460
Score = 60.5 bits (145), Expect = 2e-09
Identities = 82/305 (26%), Positives = 105/305 (34%), Gaps = 50/305 (16%)
Frame = +1
Query: 157 AGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICV 336
+G C C R CS +R CE+ SG C + C C+ + + G CV
Sbjct: 258 SGEDCGVRSCPRGCS---QRGRCENGLCVCNPGYSGEDCGVRNCPRGCSQRGRCEDGRCV 314
Query: 337 ME-------CRVDQ---DCGEGRLCISNGCGRVCFPVRRRE-----ACEHQCR-----ED 456
+ C + DCG+G C+ C VC+P E C CR ED
Sbjct: 315 CDPGYSGEDCSMRTCPWDCGDGGRCVDGRC--VCWPGYSGEDCSTRTCPRDCRGRGRCED 372
Query: 457 RDC-----GSGHQCVRKGCGHVCAPVHQVDVGICV-------TECRV---DQDC-GEGRL 588
+C SG C + C C + G CV +C +DC G GR
Sbjct: 373 GECICDAGYSGDDCGVRSCPGDCNQRGHCEDGRCVCWPGYTGADCSTRACPRDCRGRGR- 431
Query: 589 CISNGCGRVCFPGRR------EGCEHQCREDRDCGSGHQCV------RKGCGHVCAP--V 726
C C VC G C CR +C SG +CV + CG P
Sbjct: 432 CEDGVC--VCHAGYSGEDCGVRSCPGDCRGRGNCESG-RCVCWPGYTGRDCGTRACPGDC 488
Query: 727 HQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICVTECKVDQDCGEGRRCTS 906
G CV V G C S C C + G+CV D R C S
Sbjct: 489 RGRGRCVDGRCVCNPGFTGEDCGSRRCPGDCRGHGHCENGVCVCAVGYSGDDCSTRSCPS 548
Query: 907 NGCGR 921
+ GR
Sbjct: 549 DCRGR 553
Score = 53.1 bits (126), Expect = 3e-07
Identities = 62/221 (28%), Positives = 81/221 (36%), Gaps = 14/221 (6%)
Frame = +1
Query: 355 QDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDV 534
+DC + C+ C VCFP +C DC +CV+
Sbjct: 176 EDCNDQGRCVRGRC--VCFPGYSGPSCSWPSCPG-DCQGRGRCVK--------------- 217
Query: 535 GICVTECRVDQDCGEGRLCISNGCGRVCFPGRREGCEH-QCREDRDCGSGHQCVRKGCGH 711
G+CV CR G C C R C +R CE +C D SG C + C
Sbjct: 218 GVCV--CRAGFS---GPDCSQRSCPRNC--NQRGRCEEGRCVCDPGY-SGEDCGVRSCPR 269
Query: 712 VCAPVHQV--GICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICVTE-------C 864
C+ + G+CV CN G C C R CS + + G CV + C
Sbjct: 270 GCSQRGRCENGLCV--CNPGYS---GEDCGVRNCPRGCSQRGRCEDGRCVCDPGYSGEDC 324
Query: 865 KVDQ---DCGEGRRCTSNGCGRVCSPVQQKEACELQ-CKED 975
+ DCG+G RC C VC P E C + C D
Sbjct: 325 SMRTCPWDCGDGGRCVDGRC--VCWPGYSGEDCSTRTCPRD 363
>ref|NP_032538.2| prolow-density lipoprotein receptor-related protein 1 [Mus musculus].
Length = 4545
Score = 60.5 bits (145), Expect = 2e-09
Identities = 81/333 (24%), Positives = 111/333 (33%), Gaps = 45/333 (13%)
Frame = +1
Query: 115 GICVTE---CKVDQDCGAGR---RCTSNGC---GRVCSPIRRREACEHQCREDRDCGSGH 267
GIC C D DC C + C C+ R +C +CG G
Sbjct: 3385 GICTNPAFICDGDNDCQDNSDEANCDIHVCLPSQFKCTNTNRCIPGIFRCNGQDNCGDGE 3444
Query: 268 QCVRKGCGHVCAPVHQVDVGIC------VMECRVDQDCGEGR----LCISNGCGRVCFPV 417
+ C V +Q I V C D DC +G C CG F
Sbjct: 3445 D--ERDCPEVTCAPNQFQCSITKRCIPRVWVCDRDNDCVDGSDEPANCTQMTCGVDEFRC 3502
Query: 418 RRREAC---EHQCREDRDCGSGHQCVRKGCGH-VCAPVH-QVDVGICVT---ECRVDQDC 573
+ C +C + DCG G ++ C C P + CV +C D DC
Sbjct: 3503 KDSGRCIPARWKCDGEDDCGDGSDEPKEECDERTCEPYQFRCKNNRCVPGRWQCDYDNDC 3562
Query: 574 GEG---RLCISNGCGRV---CFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVH-- 729
G+ C C C GR +C D DC G K C C
Sbjct: 3563 GDNSDEESCTPRPCSESEFSCANGRCIAGRWKCDGDHDCADGSD--EKDCTPRCDMDQFQ 3620
Query: 730 -QVGICVT---ECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVG--IC---VTECKVDQDC 882
+ G C+ C+ D DC +G + G G P+ + +C +C + DC
Sbjct: 3621 CKSGHCIPLRWRCDADADCMDGSDEEACGTGVRTCPLDEFQCNNTLCKPLAWKCDGEDDC 3680
Query: 883 GEGRRCTSNGCGR-VCSPVQQKEACELQCKEDR 978
G+ C R +C P + +CK DR
Sbjct: 3681 GDNSDENPEECARFICPPNR-----PFRCKNDR 3708
Score = 50.8 bits (120), Expect = 2e-06
Identities = 54/226 (23%), Positives = 78/226 (34%), Gaps = 29/226 (12%)
Frame = +1
Query: 355 QDCGEGRLCISNG-CGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVD 531
Q G + ++NG C +C C C ED+ + +V P Q
Sbjct: 801 QQVGTNKCRVNNGGCSSLCLATPGSRQCA--CAEDQVLDTDGVTCLANPSYVPPPQCQPG 858
Query: 532 VGICVT--------ECRVDQDCGEGRLCISNGCGRVCFPGRREGCEHQ--------CRED 663
C +C D DC + C + P R CE+ C D
Sbjct: 859 EFACANNRCIQERWKCDGDNDCLDNSDEAPALCHQHTCPSDRFKCENNRCIPNRWLCDGD 918
Query: 664 RDCGSGHQCVRKGCGHVCAPVHQV----GICVT---ECNVDQDCGEGRQCTSNGCGRVCS 822
DCG+ C P +Q G C+ C++D DCG+ +++ C
Sbjct: 919 NDCGNSEDESNATCSARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCF 978
Query: 823 PVQQE--DVGICVT---ECKVDQDCGEGRRCTSNGCGRVCSPVQQK 945
P+ Q + G C+ C D DCG+ GC CS Q K
Sbjct: 979 PLTQFTCNNGRCININWRCDNDNDCGD--NSDEAGCSHSCSSTQFK 1022
Score = 50.4 bits (119), Expect = 2e-06
Identities = 79/338 (23%), Positives = 111/338 (32%), Gaps = 64/338 (18%)
Frame = +1
Query: 109 DVGICVT---ECKVDQDCGAGRRCTSNGCG-RVCSPIRRREACEH--------QCREDRD 252
D G C+ +C + DCG G C R C P + R C++ QC D D
Sbjct: 3504 DSGRCIPARWKCDGEDDCGDGSDEPKEECDERTCEPYQFR--CKNNRCVPGRWQCDYDND 3561
Query: 253 CGSG---HQCVRKGCGHV---CAPVHQVDVGICVM---ECRVDQDCGEGR---------- 375
CG C + C CA G C+ +C D DC +G
Sbjct: 3562 CGDNSDEESCTPRPCSESEFSCAN------GRCIAGRWKCDGDHDCADGSDEKDCTPRCD 3615
Query: 376 ----LCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVG-- 537
C S C P+R R C D DC G G G P+ +
Sbjct: 3616 MDQFQCKSGHC----IPLRWR------CDADADCMDGSDEEACGTGVRTCPLDEFQCNNT 3665
Query: 538 IC---VTECRVDQDCGEGRLCISNGCGR-VCFPGRREGCEH---------QCREDRDCGS 678
+C +C + DCG+ C R +C P R C++ QC +CG
Sbjct: 3666 LCKPLAWKCDGEDDCGDNSDENPEECARFICPPNRPFRCKNDRVCLWIGRQCDGVDNCGD 3725
Query: 679 G---HQCVRKGCGHVCAPVHQVGICVTE--------CNVDQDCGEGRQCTSNGCGRVCSP 825
G C + + +C + CN+ DCG+G
Sbjct: 3726 GTDEEDCEPPTAQNPHCKDKKEFLCRNQRCLSSSLRCNMFDDCGDGS------------- 3772
Query: 826 VQQEDVGI--CVTECKVDQD-CGEGRRCTSNGCGRVCS 930
+ED I +T C + CG+ RC C+
Sbjct: 3773 -DEEDCSIDPKLTSCATNASMCGDEARCVRTEKAAYCA 3809
>ref|NP_001074019.1| WAP four-disulfide core domain protein 8 [Mus musculus].
Length = 273
Score = 56.6 bits (135), Expect = 3e-08
Identities = 46/187 (24%), Positives = 65/187 (34%), Gaps = 18/187 (9%)
Frame = +1
Query: 124 VTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCA 303
++ CK D +C A +C CGR C + E C D G+ + + + +
Sbjct: 95 LSSCKTDFNCKAHFKCCQFACGRKCM-----DPYEEPCMLPSDKGNCQDILTRW--YFDS 147
Query: 304 PVHQVDVGICVMECR-------VDQDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRD 462
HQ + CR DC + + FP + R C C+ D D
Sbjct: 148 QKHQCRAFL-YSGCRGNANNFLTKTDCRNACMFVEKKGQCPLFPFQMRMECPASCKNDMD 206
Query: 463 CGSGHQCVRKGCGHVCAPVHQVDVGIC-----------VTECRVDQDCGEGRLCISNGCG 609
C +C CG +CA V V G C +C D DC C + CG
Sbjct: 207 CPEKEKCCESRCGFICARVWLVKTGFCPRKPIVCSKIDKPKCLQDIDCPLDEKCCTR-CG 265
Query: 610 RVCFPGR 630
C R
Sbjct: 266 LKCLKPR 272
Score = 50.8 bits (120), Expect = 2e-06
Identities = 45/194 (23%), Positives = 68/194 (35%), Gaps = 24/194 (12%)
Frame = +1
Query: 418 RRREACEHQ----CREDRDCGSGHQCVRKGCGHVCAPVHQV------DVGIC---VTECR 558
R+R C ++ C+ D +C + +C + CG C ++ D G C +T
Sbjct: 85 RQRLECRNESLSSCKTDFNCKAHFKCCQFACGRKCMDPYEEPCMLPSDKGNCQDILTRWY 144
Query: 559 VDQDCGEGRLCISNGCGRVCFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVG 738
D + R + +GC G + DC + V K P
Sbjct: 145 FDSQKHQCRAFLYSGC---------RGNANNFLTKTDCRNACMFVEKKGQCPLFPFQMRM 195
Query: 739 ICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGIC-----------VTECKVDQDCG 885
C C D DC E +C + CG +C+ V G C +C D DC
Sbjct: 196 ECPASCKNDMDCPEKEKCCESRCGFICARVWLVKTGFCPRKPIVCSKIDKPKCLQDIDCP 255
Query: 886 EGRRCTSNGCGRVC 927
+C + CG C
Sbjct: 256 LDEKCCTR-CGLKC 268
>ref|NP_076349.1| keratin-associated protein 5-3 [Mus musculus].
Length = 356
Score = 56.6 bits (135), Expect = 3e-08
Identities = 76/281 (27%), Positives = 90/281 (32%), Gaps = 14/281 (4%)
Frame = +1
Query: 115 GICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGH 294
G C C CG+ C GCG C C+ C CGS C + GCG
Sbjct: 111 GGCKGGCSSCGGCGSCGGC-KGGCGS-CGGCGSCGGCKGGCGSCGGCGSCGGC-KGGCGS 167
Query: 295 V--CAPVHQVDVGICVMECRVDQDCG-----EGRLCISNGCGRVCFPVRRREACEHQCRE 453
C G C C CG +G C GCG C+ C
Sbjct: 168 CGGCG-----SCGGCKGGCGSCGGCGSCGGCKGGCCSCGGCGSC-------GGCKGGCSS 215
Query: 454 DRDCGS-----GHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISN--GCGR 612
CGS G C GCG C G C + C CG + C S+ GCG
Sbjct: 216 CGGCGSCGGCKGGCCSCGGCGS-CGGCK----GGC-SSCGGCGTCGGCKGCCSSCGGCGS 269
Query: 613 VCFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQC 792
G GC+ C CGS C + GCG G C C+ CG C
Sbjct: 270 CGGCGSCGGCKGGCGSCGGCGSCGGC-KGGCG-------SCGGCKGGCSSCGGCGSCGCC 321
Query: 793 TSNGCGRVCSPVQQEDVGICVTECKVDQDCGEGRRCTSNGC 915
S+ C C C C C + C + C
Sbjct: 322 QSSCCKPCCCQ------SSCCKPCCCQSSCCKPCCCQPSCC 356
Score = 52.4 bits (124), Expect = 6e-07
Identities = 65/221 (29%), Positives = 72/221 (32%), Gaps = 9/221 (4%)
Frame = +1
Query: 283 GCGHVCAPVHQVDVGICVMECRVDQDCG--EGRLCISNGCGRVCFPVRRREACEHQCRED 456
GCG C V CV C CG +G GCG C+ C
Sbjct: 9 GCGSSCCK----PVCCCVPVCSCSS-CGGCKGGCSSCGGCGSC-------GGCKGGCGSC 56
Query: 457 RDCGSGHQCVRKGCGHV--CAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGR 630
CGS C + GCG C G C C CG C GCG G
Sbjct: 57 GGCGSCGGC-KGGCGSCGGCG-----SCGGCKGGCGSCGGCGSCGGC-KGGCGSCGGCGS 109
Query: 631 REGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCG 810
GC+ C CGS C + GCG C G C C CG C GCG
Sbjct: 110 CGGCKGGCSSCGGCGSCGGC-KGGCGS-CGGCGSCGGCKGGCGSCGGCGSCGGC-KGGCG 166
Query: 811 RVCSPVQQEDVGICVTECKVDQDCG-----EGRRCTSNGCG 918
C G C C CG +G C+ GCG
Sbjct: 167 S-CGGC--GSCGGCKGGCGSCGGCGSCGGCKGGCCSCGGCG 204
>ref|NP_035737.2| tenascin [Mus musculus].
Length = 2019
Score = 56.6 bits (135), Expect = 3e-08
Identities = 85/344 (24%), Positives = 109/344 (31%), Gaps = 57/344 (16%)
Frame = +1
Query: 115 GICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDR--------------D 252
G+CV V +D AG C C C R E++C D D
Sbjct: 261 GMCVDGRCVCKDGFAGEDCNEPLCLNNC--YNRGRCVENECVCDEGFTGEDCSELICPND 318
Query: 253 CGSGHQCVRKGC-------GHVCAPVHQVDVGICVMECRVDQDCGEGRLCISNG-CGRVC 408
C +C+ C G C + C +C+ C EG+ + G G C
Sbjct: 319 CFDRGRCINGTCYCEEGFTGEDCGEL------TCPNDCQGRGQCEEGQCVCNEGFAGADC 372
Query: 409 FPVRRREACEH-------QCRED-----RDCG--------SGH-QCVRKGCGHVCAPVHQ 525
R C H QC D DCG SGH +CV C VC
Sbjct: 373 SEKRCPADCHHRGRCLNGQCECDDGFTGADCGDLQCPNGCSGHGRCVNGQC--VC----- 425
Query: 526 VDVGICVTEC---RVDQDCGEGRLCISNGCGRVCFPGRREGCEHQCREDRDCGSGHQCVR 696
D G +C R DC LC+ C +C G + G C
Sbjct: 426 -DEGYTGEDCSQRRCPNDCHNRGLCVQGKC--ICEQGFK---------------GFDCSE 467
Query: 697 KGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICV------- 855
C + C HQ G CV + D G C C R CS + G C+
Sbjct: 468 MSCPNDC---HQHGRCVNGMCICDDDYTGEDCRDRRCPRDCSQRGRCVDGQCICEDGFTG 524
Query: 856 ---TECKVDQDCGEGRRCTSNGCGRVC-SPVQQKEACELQCKED 975
E DC RC + C +C K+ E +C D
Sbjct: 525 PDCAELSCPSDCHGHGRCVNGQC--ICHEGFTGKDCKEQRCPSD 566
Score = 53.1 bits (126), Expect = 3e-07
Identities = 83/314 (26%), Positives = 111/314 (35%), Gaps = 45/314 (14%)
Frame = +1
Query: 151 CGAGRRCTSNGCGRVCSPIRRREACEH-----------QCREDR---DCG-SGHQCVRKG 285
C ++ GCG VC P + C QC + + D G +G C +
Sbjct: 161 CSGRGNFSAEGCGCVCEPGWKGPNCSEPDCPGNCNLRGQCLDGQCICDEGFTGEDCSQLA 220
Query: 286 CGHVCAPVHQVDVGICV-MECRVDQDCG----------EGRLCISNGCGRVCFPVRRREA 432
C + C + G+CV E DCG E +C+ C VC E
Sbjct: 221 CPNDCNDQGRCVNGVCVCFEGYAGPDCGLEVCPVPCSEEHGMCVDGRC--VCKDGFAGED 278
Query: 433 C-EHQCREDRDCGSGHQCVRKGC-------GHVCAPVHQVDVGICVTECRVDQDCGEGRL 588
C E C +C + +CV C G C+ + IC +C C G
Sbjct: 279 CNEPLCL--NNCYNRGRCVENECVCDEGFTGEDCSEL------ICPNDCFDRGRCINGTC 330
Query: 589 CISNG-----CGRVCFPGRREGCEHQCREDR----DCGSGHQCVRKGCGHVCAPVHQVGI 741
G CG + P +G QC E + + +G C K C C H G
Sbjct: 331 YCEEGFTGEDCGELTCPNDCQG-RGQCEEGQCVCNEGFAGADCSEKRCPADC---HHRGR 386
Query: 742 CVT-ECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICV-TECKVDQDCGEGRRCTSNGC 915
C+ +C D D G C C CS + G CV E +DC + RRC N C
Sbjct: 387 CLNGQCECD-DGFTGADCGDLQCPNGCSGHGRCVNGQCVCDEGYTGEDCSQ-RRC-PNDC 443
Query: 916 GRVCSPVQQKEACE 957
VQ K CE
Sbjct: 444 HNRGLCVQGKCICE 457
>ref|NP_001001979.1| multiple epidermal growth factor-like domains protein 10 precursor
[Mus musculus].
Length = 1147
Score = 56.2 bits (134), Expect = 4e-08
Identities = 73/308 (23%), Positives = 98/308 (31%), Gaps = 30/308 (9%)
Frame = +1
Query: 133 CKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDR---DCGSGHQCVRK-GC---- 288
C + C G C + C+P R CE C++ +C C GC
Sbjct: 495 CNLTCQCLNGGACNTLDGTCTCAPGWRGAKCEFPCQDGTYGLNCAERCDCSHADGCHPTT 554
Query: 289 GHV-CAP----VHQVDV---GICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQ 444
GH C P VH V G C + C G C + C P R C+
Sbjct: 555 GHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRI 614
Query: 445 CREDRDCGSGHQCVRK--GCGHVCAPVHQVDVGIC-----VTECRVDQDCGEGRLCISNG 603
C GH+C + C H P H + G+C T ++ C GR
Sbjct: 615 CSPGF---YGHRCSQTCPQCVHSSGPCHHI-TGLCDCLPGFTGALCNEVCPSGRF--GKN 668
Query: 604 CGRVCFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEG 783
C VC C DR C + C C P H C+ CN C G
Sbjct: 669 CAGVCTCTNNGTCNPI---DRSCQCYPGWIGSDCSQPCPPAHWGPNCIHTCN----CHNG 721
Query: 784 RQCTSNGCGRVCSP-------VQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQ 942
C++ C+P Q+ +G +C + C G C C
Sbjct: 722 AFCSAYDGECKCTPGWTGLYCTQRCPLGFYGKDCALICQCQNGADCDHISGQCTCRTGFM 781
Query: 943 KEACELQC 966
CE +C
Sbjct: 782 GRHCEQKC 789
Score = 53.5 bits (127), Expect = 3e-07
Identities = 77/294 (26%), Positives = 98/294 (33%), Gaps = 24/294 (8%)
Frame = +1
Query: 148 DCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQC--VRKGC-------GHVC 300
+C T C +C P + CE +C C +G C V C G VC
Sbjct: 209 ECRCSPGYTGAFCEDLCPPGKHGPHCEQRC----PCQNGGVCHHVTGECSCPSGWMGTVC 264
Query: 301 A-PVHQVDVG-ICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQCREDR---DC 465
P + G C EC+ C G C + C P E C+ +C C
Sbjct: 265 GQPCPEGRFGKNCSQECQ----CHNGGTCDAATGQCHCSPGYTGERCQDECPVGSYGVRC 320
Query: 466 GSGHQCVRKG-CGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRREGC 642
+CV G C HV G C+ E + E RLC G C +R C
Sbjct: 321 AEACRCVNGGKCYHVS--------GTCLCEAGFSGELCEARLCPEGLYGIKC--DKRCPC 370
Query: 643 E----HQCRE-DRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGC 807
H C +CG C C+P C C+ C G C S
Sbjct: 371 HLDNTHSCHPMSGECGCKPGWSGLYCNETCSPGFYGEACQQICS----CQNGADCDSVTG 426
Query: 808 GRVCSPVQQEDVGICVTECKVDQDCGE-GRRCTSN-GC--GRVCSPVQQKEACE 957
C+P G T+C G G C+S GC VCSPV C+
Sbjct: 427 RCACAP------GFKGTDCSTPCPLGRYGINCSSRCGCKNDAVCSPVDGSCICK 474
Score = 52.8 bits (125), Expect = 4e-07
Identities = 76/290 (26%), Positives = 96/290 (33%), Gaps = 15/290 (5%)
Frame = +1
Query: 148 DCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVG 327
+CG + C CSP EAC+ C C +G C CAP G
Sbjct: 384 ECGCKPGWSGLYCNETCSPGFYGEACQQIC----SCQNGADCDSVTGRCACAP------G 433
Query: 328 ICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGS-GHQCVRKGCGH 504
+C G + S+ CG C+ D C C+ K H
Sbjct: 434 FKGTDCSTPCPLGRYGINCSSRCG---------------CKNDAVCSPVDGSCICKAGWH 478
Query: 505 VCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPG-RREGCEHQCREDRDCGSG 681
+ G C + C G C + C PG R CE C +D G
Sbjct: 479 GVDCSIRCPSGTWGFGCNLTCQCLNGGACNTLDGTCTCAPGWRGAKCEFPC---QDGTYG 535
Query: 682 HQCV-RKGCGHV--CAPVHQVGICV---TECNVDQDCGEGR---QCTSNGC----GRVCS 822
C R C H C P C+ + + D C EGR C S C G CS
Sbjct: 536 LNCAERCDCSHADGCHPTTGHCRCLPGWSGVHCDSVCAEGRWGPNC-SLPCYCKNGASCS 594
Query: 823 PVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACELQCKE 972
P D GIC +C G R T+ C R+CSP C C +
Sbjct: 595 P----DDGIC--------ECAPGFRGTT--CQRICSPGFYGHRCSQTCPQ 630
>ref|NP_056624.1| keratin-associated protein 5-4 [Mus musculus].
Length = 223
Score = 55.5 bits (132), Expect = 7e-08
Identities = 61/242 (25%), Positives = 76/242 (31%), Gaps = 19/242 (7%)
Frame = +1
Query: 151 CGAGRRCTSN--GCGRVCS-------PIRRREACEHQCREDRDCGSGHQCVRKGCGHV-- 297
CG C S+ GCG C P+ +C C+ CGS C + GCG
Sbjct: 4 CGCSGGCGSSCGGCGSSCCKPVCCCVPVCSCSSCGG-CKGG--CGSCGGC-KGGCGSCGG 59
Query: 298 ----CAPVHQVDVGICVMECRVDQDCGEG--RLCISNGCGRVCFPVRRREACEHQCREDR 459
C G C C C + C S+GCG C C+ C +
Sbjct: 60 CKGGCGSCGGCKGGCCQSSCCKPCCCQSSCCKPCCSSGCGSSC--------CQSSCCKPC 111
Query: 460 DCGSG--HQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRR 633
C S C GCG C C C C + C S+ C C
Sbjct: 112 CCQSSCCKPCCSSGCGSSCCQ------SSCCKPCCCQSSCCKPCCCQSSCCKPCC----S 161
Query: 634 EGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGR 813
GC C + C C + C C P C C C + C S+ C
Sbjct: 162 SGCGSSCCQSSCCKPC--CCQSSC---CKPCCCQSSCCKPCCCQSSCCKPCCCQSSCCAP 216
Query: 814 VC 819
VC
Sbjct: 217 VC 218
>ref|NP_598682.2| nuclear transcription factor, X-box binding-like 1 [Mus musculus].
Length = 918
Score = 53.9 bits (128), Expect = 2e-07
Identities = 64/259 (24%), Positives = 90/259 (34%), Gaps = 13/259 (5%)
Frame = +1
Query: 190 RVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVMECRV------ 351
R CS ++ +C+ C CG H+C C P +V CV +V
Sbjct: 306 RRCSA--KQWSCQLPCGRKLLCGH-HKCENPCHAGNCQPCPRVSRQKCVCGKKVAERSCA 362
Query: 352 ------DQDCGEGRLCISNGCGRVCFPVRRREACEHQCRED-RDCGSGHQCVRKGCGHVC 510
DQ CG+ C ++ C +VC AC R R C C + C
Sbjct: 363 SPVWHCDQVCGKTLPCGNHTCEQVCHV----GACGECPRSGKRSC----PCQKSKFSLPC 414
Query: 511 APVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRREGCEHQCREDRDCGSGHQC 690
DV C C +CG R C + C G E C + + CG +
Sbjct: 415 TE----DVPTCGDSCDKILECGIHR------CSQRCHRGPCETCRQEVEKQCRCGKHTKR 464
Query: 691 VRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICVTECKV 870
+ P H+ +C T+C +DC + QC C C P
Sbjct: 465 M---------PCHKPYLCETKCVKMRDC-QKHQCRRKCCPGNCPPC-------------- 500
Query: 871 DQDCGEGRRCTSNGCGRVC 927
DQ+CG C ++ C VC
Sbjct: 501 DQNCGRTLGCRNHKCPSVC 519
Score = 53.5 bits (127), Expect = 3e-07
Identities = 63/261 (24%), Positives = 88/261 (33%), Gaps = 20/261 (7%)
Frame = +1
Query: 142 DQDCGAGRRCTSNGCGRVCS-------PIRRREACEHQ-------CRED-RDCGSGHQCV 276
DQ CG C ++ C +VC P + +C Q C ED CG +
Sbjct: 369 DQVCGKTLPCGNHTCEQVCHVGACGECPRSGKRSCPCQKSKFSLPCTEDVPTCGDSCDKI 428
Query: 277 RKGCG-HVCAP-VHQVDVGICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQCR 450
+ CG H C+ H+ C E CG+ + P + CE +C
Sbjct: 429 LE-CGIHRCSQRCHRGPCETCRQEVEKQCRCGKHTKRM---------PCHKPYLCETKCV 478
Query: 451 EDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGR 630
+ RDC HQC RK C C P DQ+CG C ++ C VC G
Sbjct: 479 KMRDCQK-HQCRRKCCPGNCPPC--------------DQNCGRTLGCRNHKCPSVCHRGS 523
Query: 631 REGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQC---TSN 801
C +CG+ V G P +C E +C
Sbjct: 524 CYPCPETVDVKCNCGNAKVTVPCGRERTTRPPKCKELCSRPPTCHHASQEKHRCHFGPCP 583
Query: 802 GCGRVCSPVQQEDVGICVTEC 864
C + C V ++ +C C
Sbjct: 584 PCHQPCQKVLEKCGHLCPESC 604
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,284,711
Number of extensions: 1445181
Number of successful extensions: 5777
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 5252
Number of HSP's successfully gapped: 42
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012519
(1027 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_542181.1| WAP four-disulfide core domain protein 3 precur... 91 1e-18
Alignment gi|NP_061978.6| tenascin-X isoform 1 precursor [Homo sapiens]. 64 2e-10
Alignment gi|NP_941960.1| keratin-associated protein 10-4 [Homo sapiens]. 63 4e-10
Alignment gi|NP_001018064.1| low-density lipoprotein receptor-related pro... 62 7e-10
Alignment gi|NP_004622.2| low-density lipoprotein receptor-related protei... 62 7e-10
Alignment gi|NP_002323.2| prolow-density lipoprotein receptor-related pro... 61 2e-09
Alignment gi|NP_941962.1| keratin-associated protein 10-7 [Homo sapiens]. 60 3e-09
Alignment gi|NP_002151.2| tenascin precursor [Homo sapiens]. 60 3e-09
Alignment gi|NP_001018066.1| very low-density lipoprotein receptor isofor... 58 1e-08
Alignment gi|NP_003374.3| very low-density lipoprotein receptor isoform a... 58 1e-08
>ref|NP_542181.1| WAP four-disulfide core domain protein 3 precursor [Homo sapiens].
Length = 231
Score = 91.3 bits (225), Expect = 1e-18
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 32/175 (18%)
Frame = +1
Query: 196 CSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQ---------VDVGICVMECR 348
C P + C+ C+ D C + +C GCG +C + + + C+ C
Sbjct: 33 CPP--HKNPCKELCQGDELCPAEQKCCTTGCGRICRDIPKGRKRDCPRVIRKQSCLKRCI 90
Query: 349 VDQDCGEGRLCISNGCGRVCF-PVRRREA-------------CEHQCREDRDCGSGHQCV 486
D+ C + C + GC + C P+ +++ CE C D C GH+C
Sbjct: 91 TDETCPGVKKCCTLGCNKSCVVPISKQKLAEFGGECPADPLPCEELCDGDASCPQGHKCC 150
Query: 487 RKGCGHVC---------APVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFP 624
GCG C +V VG+C+ C +D++C G C +GCGR C P
Sbjct: 151 STGCGRTCLGDIEGGRGGDCPKVLVGLCIVGCVMDENCQAGEKCCKSGCGRFCVP 205
Score = 87.8 bits (216), Expect = 1e-17
Identities = 51/193 (26%), Positives = 77/193 (39%), Gaps = 23/193 (11%)
Frame = +1
Query: 424 REACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNG 603
+ C+ C+ D C + +C GCG +C +D +GR
Sbjct: 37 KNPCKELCQGDELCPAEQKCCTTGCGRIC------------------RDIPKGR---KRD 75
Query: 604 CGRVCFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCA-PVHQVGI------------- 741
C RV R++ C +C D C +C GC C P+ + +
Sbjct: 76 CPRVI---RKQSCLKRCITDETCPGVKKCCTLGCNKSCVVPISKQKLAEFGGECPADPLP 132
Query: 742 CVTECNVDQDCGEGRQCTSNGCGRVC---------SPVQQEDVGICVTECKVDQDCGEGR 894
C C+ D C +G +C S GCGR C + VG+C+ C +D++C G
Sbjct: 133 CEELCDGDASCPQGHKCCSTGCGRTCLGDIEGGRGGDCPKVLVGLCIVGCVMDENCQAGE 192
Query: 895 RCTSNGCGRVCSP 933
+C +GCGR C P
Sbjct: 193 KCCKSGCGRFCVP 205
Score = 80.1 bits (196), Expect = 3e-15
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 34/166 (20%)
Frame = +1
Query: 121 CVTECKVDQDCGAGRRCTSNGCGRVCSPIR-----------RREACEHQCREDRDCGSGH 267
C C+ D+ C A ++C + GCGR+C I R+++C +C D C
Sbjct: 40 CKELCQGDELCPAEQKCCTTGCGRICRDIPKGRKRDCPRVIRKQSCLKRCITDETCPGVK 99
Query: 268 QCVRKGCGHVC-APVHQ-----------VDVGICVMECRVDQDCGEGRLCISNGCGRVCF 411
+C GC C P+ + D C C D C +G C S GCGR C
Sbjct: 100 KCCTLGCNKSCVVPISKQKLAEFGGECPADPLPCEELCDGDASCPQGHKCCSTGCGRTCL 159
Query: 412 -----------PVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAP 516
P C C D +C +G +C + GCG C P
Sbjct: 160 GDIEGGRGGDCPKVLVGLCIVGCVMDENCQAGEKCCKSGCGRFCVP 205
Score = 62.4 bits (150), Expect(2) = 1e-10
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Frame = +1
Query: 622 PGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAP-----------VHQVGICVTECNVDQ 768
P + C+ C+ D C + +C GCG +C V + C+ C D+
Sbjct: 34 PPHKNPCKELCQGDELCPAEQKCCTTGCGRICRDIPKGRKRDCPRVIRKQSCLKRCITDE 93
Query: 769 DCGEGRQCTSNGCGRVC-SPVQQEDV----GICVTE-------CKVDQDCGEGRRCTSNG 912
C ++C + GC + C P+ ++ + G C + C D C +G +C S G
Sbjct: 94 TCPGVKKCCTLGCNKSCVVPISKQKLAEFGGECPADPLPCEELCDGDASCPQGHKCCSTG 153
Query: 913 CGRVC 927
CGR C
Sbjct: 154 CGRTC 158
Score = 22.7 bits (47), Expect(2) = 1e-10
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = +3
Query: 975 QDCWSGHXCLREGCG 1019
++C +G C + GCG
Sbjct: 186 ENCQAGEKCCKSGCG 200
>ref|NP_061978.6| tenascin-X isoform 1 precursor [Homo sapiens].
Length = 4242
Score = 64.3 bits (155), Expect = 2e-10
Identities = 87/337 (25%), Positives = 111/337 (32%), Gaps = 52/337 (15%)
Frame = +1
Query: 115 GICVTECKVDQDCGAGRRC-----TSNGCGRVCSP--IRRREACEHQCREDRDCGSGHQC 273
G C +C C GR T CG P + R C R SG C
Sbjct: 185 GSCPDDCNDQGRCVRGRCVCFPGYTGPSCGWPSCPGDCQGRGRCVQGVCVCRAGFSGPDC 244
Query: 274 VRKGCGHVCAPVHQVDVGICVMECR-VDQDCGEGRLCISNGCGRVCFPVRRREACEHQCR 450
++ C C+ + + G CV + DCG C R C +R CE+
Sbjct: 245 SQRSCPRGCSQRGRCEGGRCVCDPGYTGDDCG------MRSCPRGC---SQRGRCENGRC 295
Query: 451 EDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTE-------CRVDQ---DCGEGRLCISN 600
+G C + C C+ + G CV + C DCGEG C+
Sbjct: 296 VCNPGYTGEDCGVRSCPRGCSQRGRCKDGRCVCDPGYTGEDCGTRSCPWDCGEGGRCVDG 355
Query: 601 GCGRVCFPG------RREGCEHQCREDRDCGSGHQCVRKG-CGHVCAPVHQVGICVTECN 759
C VC+PG C CR C G G G C V C +CN
Sbjct: 356 RC--VCWPGYTGEDCSTRTCPRDCRGRGRCEDGECICDTGYSGDDCG----VRSCPGDCN 409
Query: 760 VDQDCGEGR----------QCTSNGCGRVCSPVQQEDVGICVTECKVD-QDCG------- 885
C +GR C S C R C + + G+CV +DCG
Sbjct: 410 QRGRCEDGRCVCWPGYTGTDCGSRACPRDCRGRGRCENGVCVCNAGYSGEDCGVRSCPGD 469
Query: 886 -EGR-RCTSNGC-------GRVCSPVQQKEACELQCK 969
GR RC S C GR C AC C+
Sbjct: 470 CRGRGRCESGRCMCWPGYTGRDCG----TRACPGDCR 502
Score = 49.7 bits (117), Expect = 4e-06
Identities = 63/219 (28%), Positives = 75/219 (34%), Gaps = 13/219 (5%)
Frame = +1
Query: 358 DCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVG 537
DC + C+ C VCFP +C DC +CV+ G
Sbjct: 190 DCNDQGRCVRGRC--VCFPGYTGPSCGWPSCPG-DCQGRGRCVQ---------------G 231
Query: 538 ICVTECRVDQDCGEGRLCISNGCGRVCFP-GRREGCEHQCREDRDCG-SGHQCVRKGCGH 711
+CV CR G C C R C GR EG C D G +G C + C
Sbjct: 232 VCV--CRAGFS---GPDCSQRSCPRGCSQRGRCEGGRCVC----DPGYTGDDCGMRSCPR 282
Query: 712 VCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICVTE-------CKV 870
C+ Q G C V G C C R CS + G CV + C
Sbjct: 283 GCS---QRGRCENGRCVCNPGYTGEDCGVRSCPRGCSQRGRCKDGRCVCDPGYTGEDCGT 339
Query: 871 DQ---DCGEGRRCTSNGCGRVCSPVQQKEACELQ-CKED 975
DCGEG RC C VC P E C + C D
Sbjct: 340 RSCPWDCGEGGRCVDGRC--VCWPGYTGEDCSTRTCPRD 376
>ref|NP_941960.1| keratin-associated protein 10-4 [Homo sapiens].
Length = 401
Score = 63.2 bits (152), Expect = 4e-10
Identities = 71/295 (24%), Positives = 95/295 (32%), Gaps = 29/295 (9%)
Frame = +1
Query: 157 AGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICV 336
+ R C C CS + + C C E C VC PV +V C
Sbjct: 11 SSRVCLPGSCDS-CSDSWQVDDCPESCCEPPCCAPSCCAPAPCLSLVCTPVSRVSSPCCP 69
Query: 337 MECRVDQDCGEGRLCISNGCGRVCFP-VRRREACEHQCREDRDCGSGHQCVRKGCGHVCA 513
+ C E C S GC C P ++ +C+ C C CV C VC
Sbjct: 70 VTC-------EPSPCQS-GCTSSCTPSCCQQSSCQLACCASSPCQQAC-CVPVCCKTVC- 119
Query: 514 PVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCF---PGRREGCEHQCREDRDCGSGH 684
C C V CG+ C + C C P ++ C C + G
Sbjct: 120 ---------CKPVCCVPVCCGDSSCCQQSSCQSACCTSSPCQQACCVPICCKPVCSGISS 170
Query: 685 QCVRKG----------CGHVCAPVHQVGICVTECN---VDQDCGEGRQCTSNGCGRVC-- 819
C ++ C VC P C++ C Q + CTS+ C + C
Sbjct: 171 SCCQQSSCVSCVSSPCCQAVCEPSPCQSGCISSCTPSCCQQSSCQPACCTSSSCQQACCV 230
Query: 820 ---------SPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVCS-PVQQKEAC 954
PV ED C + C CTS+ C + C PV K C
Sbjct: 231 PVCCKTVCCKPVCSEDSSSCCQQSSCQPAC-----CTSSPCQQACCVPVCCKPVC 280
Score = 51.2 bits (121), Expect = 2e-06
Identities = 52/209 (24%), Positives = 66/209 (31%), Gaps = 11/209 (5%)
Frame = +1
Query: 373 RLCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTE 552
R+C+ C C + + C C E C VC PV +V C
Sbjct: 13 RVCLPGSCDS-CSDSWQVDDCPESCCEPPCCAPSCCAPAPCLSLVCTPVSRVSSPCCPVT 71
Query: 553 CRVDQDCGEGRLCISNGCGRVCFPG--RREGCEHQCREDRDCGSGHQCVRKGCGHVCAPV 726
C E C S GC C P ++ C+ C C CV C VC
Sbjct: 72 C-------EPSPCQS-GCTSSCTPSCCQQSSCQLACCASSPCQQAC-CVPVCCKTVC--- 119
Query: 727 HQVGICVTECNVDQDCGEGRQCTSNGCGRVC---SPVQQEDVGICVTEC------KVDQD 879
C C V CG+ C + C C SP QQ CV C +
Sbjct: 120 -----CKPVCCVPVCCGDSSCCQQSSCQSACCTSSPCQQ---ACCVPICCKPVCSGISSS 171
Query: 880 CGEGRRCTSNGCGRVCSPVQQKEACELQC 966
C + C S C V + C+ C
Sbjct: 172 CCQQSSCVSCVSSPCCQAVCEPSPCQSGC 200
>ref|NP_001018064.1| low-density lipoprotein receptor-related protein 8 isoform 4
precursor [Homo sapiens].
Length = 904
Score = 62.4 bits (150), Expect = 7e-10
Identities = 81/335 (24%), Positives = 114/335 (34%), Gaps = 52/335 (15%)
Frame = +1
Query: 109 DVGICVTE---CKVDQDCGAGR-----RCTSNGCGRV---CSPIRRR-EACEHQCREDRD 252
D G C+ E C +++C G CT C C P + +C ++D
Sbjct: 94 DNGHCIHERWKCDGEEECPDGSDESEATCTKQVCPAEKLSCGPTSHKCVPASWRCDGEKD 153
Query: 253 CGSGHQCVRKGCGHVCAPVHQVDVG-----ICVMECRVDQDCGEG---RLCISNGCGR-- 402
C G GC +CAP H+ G V C D DCG+G R C CG
Sbjct: 154 CEGGAD--EAGCATLCAP-HEFQCGNRSCLAAVFVCDGDDDCGDGSDERGCADPACGPRE 210
Query: 403 ---------VCFPVRRREACEHQCR-EDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTE 552
C P R C+ Q EDR + C R G G AP C T
Sbjct: 211 FRCGGDGGGACIP--ERWVCDRQFDCEDRSDEAAELCGRPGPGATSAPA------ACATA 262
Query: 553 CRVDQDCGEGRLCISNGCGRVCFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQ 732
+ GE C+ G +C DRDC G Q
Sbjct: 263 SQFACRSGE---CVHLGW--------------RCDGDRDCKDKSDEADCPLGTCRGDEFQ 305
Query: 733 VG-----ICVTECNVDQDCGEG----------RQCTSN--GCGRVCSPVQQEDVGICVTE 861
G + + CN +QDC +G +C N GC +C+ ++ C
Sbjct: 306 CGDGTCVLAIKHCNQEQDCPDGSDEAGCLQGLNECLHNNGGCSHICTDLKIGFECTCPAG 365
Query: 862 CKV--DQDCGEGRRCTS-NGCGRVCSPVQQKEACE 957
++ + CG+ C + C ++C + CE
Sbjct: 366 FQLLDQKTCGDIDECKDPDACSQICVNYKGYFKCE 400
>ref|NP_004622.2| low-density lipoprotein receptor-related protein 8 isoform 1
precursor [Homo sapiens].
Length = 963
Score = 62.4 bits (150), Expect = 7e-10
Identities = 81/335 (24%), Positives = 114/335 (34%), Gaps = 52/335 (15%)
Frame = +1
Query: 109 DVGICVTE---CKVDQDCGAGR-----RCTSNGCGRV---CSPIRRR-EACEHQCREDRD 252
D G C+ E C +++C G CT C C P + +C ++D
Sbjct: 94 DNGHCIHERWKCDGEEECPDGSDESEATCTKQVCPAEKLSCGPTSHKCVPASWRCDGEKD 153
Query: 253 CGSGHQCVRKGCGHVCAPVHQVDVG-----ICVMECRVDQDCGEG---RLCISNGCGR-- 402
C G GC +CAP H+ G V C D DCG+G R C CG
Sbjct: 154 CEGGAD--EAGCATLCAP-HEFQCGNRSCLAAVFVCDGDDDCGDGSDERGCADPACGPRE 210
Query: 403 ---------VCFPVRRREACEHQCR-EDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTE 552
C P R C+ Q EDR + C R G G AP C T
Sbjct: 211 FRCGGDGGGACIP--ERWVCDRQFDCEDRSDEAAELCGRPGPGATSAPA------ACATA 262
Query: 553 CRVDQDCGEGRLCISNGCGRVCFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQ 732
+ GE C+ G +C DRDC G Q
Sbjct: 263 SQFACRSGE---CVHLGW--------------RCDGDRDCKDKSDEADCPLGTCRGDEFQ 305
Query: 733 VG-----ICVTECNVDQDCGEG----------RQCTSN--GCGRVCSPVQQEDVGICVTE 861
G + + CN +QDC +G +C N GC +C+ ++ C
Sbjct: 306 CGDGTCVLAIKHCNQEQDCPDGSDEAGCLQGLNECLHNNGGCSHICTDLKIGFECTCPAG 365
Query: 862 CKV--DQDCGEGRRCTS-NGCGRVCSPVQQKEACE 957
++ + CG+ C + C ++C + CE
Sbjct: 366 FQLLDQKTCGDIDECKDPDACSQICVNYKGYFKCE 400
>ref|NP_002323.2| prolow-density lipoprotein receptor-related protein 1 precursor [Homo
sapiens].
Length = 4544
Score = 60.8 bits (146), Expect = 2e-09
Identities = 82/333 (24%), Positives = 111/333 (33%), Gaps = 45/333 (13%)
Frame = +1
Query: 115 GICVTE---CKVDQDCGAGR---RCTSNGC---GRVCSPIRRREACEHQCREDRDCGSGH 267
GIC C D DC C + C C+ R +C +CG G
Sbjct: 3384 GICTNPAFICDGDNDCQDNSDEANCDIHVCLPSQFKCTNTNRCIPGIFRCNGQDNCGDGE 3443
Query: 268 QCVRKGCGHVCAPVHQVDVGIC------VMECRVDQDCGEGR----LCISNGCGRVCFPV 417
+ C V +Q I V C D DC +G C CG F
Sbjct: 3444 D--ERDCPEVTCAPNQFQCSITKRCIPRVWVCDRDNDCVDGSDEPANCTQMTCGVDEFRC 3501
Query: 418 RRREAC---EHQCREDRDCGSGHQCVRKGCGH-VCAPVH-QVDVGICVT---ECRVDQDC 573
+ C +C + DCG G ++ C C P + CV +C D DC
Sbjct: 3502 KDSGRCIPARWKCDGEDDCGDGSDEPKEECDERTCEPYQFRCKNNRCVPGRWQCDYDNDC 3561
Query: 574 GEG---RLCISNGCGRV---CFPGRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVH-- 729
G+ C C C GR +C D DC G K C C
Sbjct: 3562 GDNSDEESCTPRPCSESEFSCANGRCIAGRWKCDGDHDCADGSD--EKDCTPRCDMDQFQ 3619
Query: 730 -QVGICVT---ECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVG--IC---VTECKVDQDC 882
+ G C+ C+ D DC +G + G G P+ + +C +C + DC
Sbjct: 3620 CKSGHCIPLRWRCDADADCMDGSDEEACGTGVRTCPLDEFQCNNTLCKPLAWKCDGEDDC 3679
Query: 883 GEGRRCTSNGCGR-VCSPVQQKEACELQCKEDR 978
G+ C R VC P + +CK DR
Sbjct: 3680 GDNSDENPEECARFVCPPNR-----PFRCKNDR 3707
Score = 51.2 bits (121), Expect = 2e-06
Identities = 80/341 (23%), Positives = 109/341 (31%), Gaps = 67/341 (19%)
Frame = +1
Query: 109 DVGICVT---ECKVDQDCGAGRRCTSNGCG-RVCSPIRRREACEH--------QCREDRD 252
D G C+ +C + DCG G C R C P + R C++ QC D D
Sbjct: 3503 DSGRCIPARWKCDGEDDCGDGSDEPKEECDERTCEPYQFR--CKNNRCVPGRWQCDYDND 3560
Query: 253 CGSG---HQCVRKGCGHV---CAPVHQVDVGICVM---ECRVDQDCGEGR---------- 375
CG C + C CA G C+ +C D DC +G
Sbjct: 3561 CGDNSDEESCTPRPCSESEFSCAN------GRCIAGRWKCDGDHDCADGSDEKDCTPRCD 3614
Query: 376 ----LCISNGCGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVG-- 537
C S C P+R R C D DC G G G P+ +
Sbjct: 3615 MDQFQCKSGHC----IPLRWR------CDADADCMDGSDEEACGTGVRTCPLDEFQCNNT 3664
Query: 538 IC---VTECRVDQDCGEGRLCISNGCGR-VCFPGRREGCEH---------QCREDRDCGS 678
+C +C + DCG+ C R VC P R C++ QC +CG
Sbjct: 3665 LCKPLAWKCDGEDDCGDNSDENPEECARFVCPPNRPFRCKNDRVCLWIGRQCDGTDNCGD 3724
Query: 679 G---HQCVRKGCGHVCAPVHQVGICVTE--------CNVDQDCGEGRQCTSNGCGRVCSP 825
G C + +C + CN+ DCG+G
Sbjct: 3725 GTDEEDCEPPTAHTTHCKDKKEFLCRNQRCLSSSLRCNMFDDCGDGS------------- 3771
Query: 826 VQQEDVGI------CVTECKVDQDCGEGRRCTSNGCGRVCS 930
+ED I C T + CG+ RC C+
Sbjct: 3772 -DEEDCSIDPKLTSCATNASI---CGDEARCVRTEKAAYCA 3808
Score = 50.8 bits (120), Expect = 2e-06
Identities = 54/226 (23%), Positives = 78/226 (34%), Gaps = 29/226 (12%)
Frame = +1
Query: 355 QDCGEGRLCISNG-CGRVCFPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVD 531
Q G + ++NG C +C C C ED+ + +V P Q
Sbjct: 800 QQVGTNKCRVNNGGCSSLCLATPGSRQCA--CAEDQVLDADGVTCLANPSYVPPPQCQPG 857
Query: 532 VGICVT--------ECRVDQDCGEGRLCISNGCGRVCFPGRREGCEHQ--------CRED 663
C +C D DC + C + P R CE+ C D
Sbjct: 858 EFACANSRCIQERWKCDGDNDCLDNSDEAPALCHQHTCPSDRFKCENNRCIPNRWLCDGD 917
Query: 664 RDCGSGHQCVRKGCGHVCAPVHQV----GICVT---ECNVDQDCGEGRQCTSNGCGRVCS 822
DCG+ C P +Q G C+ C++D DCG+ +++ C
Sbjct: 918 NDCGNSEDESNATCSARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCF 977
Query: 823 PVQQE--DVGICVT---ECKVDQDCGEGRRCTSNGCGRVCSPVQQK 945
P+ Q + G C+ C D DCG+ GC CS Q K
Sbjct: 978 PLTQFTCNNGRCININWRCDNDNDCGD--NSDEAGCSHSCSSTQFK 1021
>ref|NP_941962.1| keratin-associated protein 10-7 [Homo sapiens].
Length = 370
Score = 60.1 bits (144), Expect = 3e-09
Identities = 82/296 (27%), Positives = 103/296 (34%), Gaps = 22/296 (7%)
Frame = +1
Query: 133 CKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVH 312
C D G+ R C C CS + + C C E C C+ VC PV
Sbjct: 9 CSSDLSYGS-RVCLPGSCDS-CSDSWQVDDCPESCCEPPCCAPA-PCLSL----VCTPVS 61
Query: 313 QVDVGICVMECRVDQDCGEGRLCISNGCGRVCFP-VRRREACEHQCREDRDCGSGHQCVR 489
V C + C E C S GC C P ++ +C+ C C CV
Sbjct: 62 YVSSPCCRVTC-------EPSPCQS-GCTSSCTPSCCQQSSCQLACCASSPCQQAC-CVP 112
Query: 490 KGCGHVCA-PVHQVDVGICVTECRVDQDCGEGRLCISNGCGR----------VCFPGRRE 636
C VC PV+ CV C D C + C S C +C
Sbjct: 113 VCCKTVCCKPVY------CVPVCSGDSSCCQQSSCQSACCTSSPCQQACCVPICCKPVCS 166
Query: 637 GCEHQCREDRDCGSGHQCVRKGCGH-VCAPVHQVGICVTECN---VDQDCGEGRQCTSNG 804
G C + C S CV C VC P C++ C Q + CTS+
Sbjct: 167 GISSSCCQQSSCVS---CVSSPCCQAVCEPSPCQSGCISSCTPSCCQQSSCKPACCTSSP 223
Query: 805 CGRVCS-PVQQEDVGICVTECKVDQ-DCGEGRRCTSN----GCGRVCSPVQQKEAC 954
C + C PV + V CV C D C + CTS+ GC C PV K C
Sbjct: 224 CQQACCVPVCCKPV-CCVPTCSDDSGSCCQPACCTSSQSQQGC---CVPVCCKPVC 275
>ref|NP_002151.2| tenascin precursor [Homo sapiens].
Length = 2201
Score = 60.1 bits (144), Expect = 3e-09
Identities = 88/300 (29%), Positives = 104/300 (34%), Gaps = 29/300 (9%)
Frame = +1
Query: 115 GICVTECKVDQDCGAGRRCTSNGCGRVCSPIRRREACEHQCREDRDCGSGHQCVRKGCGH 294
G CV V D AG C C C R E++C D +G C C +
Sbjct: 261 GTCVDGLCVCHDGFAGDDCNKPLCLNNC--YNRGRCVENECVCDEGF-TGEDCSELICPN 317
Query: 295 VCAPVHQVDVGICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREACEHQCREDRDCGSG 474
C D G C+ ++ G C C C R E E QC D +G
Sbjct: 318 DC-----FDRGRCINGTCYCEEGFTGEDCGKPTCPHACHTQGRCE--EGQCVCDEGF-AG 369
Query: 475 HQCVRKGCGHVCAPVHQVDVGICVT-ECRVDQ-----DCGEGRLCISNGC---GR----- 612
C K C C + G CV C D DCGE L NGC GR
Sbjct: 370 VDCSEKRCPADCH-----NRGRCVDGRCECDDGFTGADCGE--LKCPNGCSGHGRCVNGQ 422
Query: 613 -VCFPGRR-EGCEHQCREDRDCGSGHQCVRKGC-------GHVCAPV------HQVGICV 747
VC G E C Q R DC S +CV C G+ C+ + HQ G CV
Sbjct: 423 CVCDEGYTGEDCS-QLRCPNDCHSRGRCVEGKCVCEQGFKGYDCSDMSCPNDCHQHGRCV 481
Query: 748 TECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICVTECKVDQDCGEGRRCTSNGCGRVC 927
V D G C C R CS + G+CV V +D G C C C
Sbjct: 482 NGMCVCDDGYTGEDCRDRQCPRDCS-----NRGLCVDGQCVCEDGFTGPDCAELSCPNDC 536
Score = 52.0 bits (123), Expect = 9e-07
Identities = 80/313 (25%), Positives = 109/313 (34%), Gaps = 38/313 (12%)
Frame = +1
Query: 151 CGAGRRCTSNGCGRVCSPIRRREAC-EHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVG 327
C ++ GCG VC P + C E +C +C +C+ C +C D G
Sbjct: 161 CSGRGNFSTEGCGCVCEPGWKGPNCSEPEC--PGNCHLRGRCIDGQC--IC------DDG 210
Query: 328 ICVMEC---RVDQDCGEGRLCISNGCGRVCFPVR-----RREACEHQCRED--------- 456
+C DC + C++ C +CF RE C C E+
Sbjct: 211 FTGEDCSQLACPSDCNDQGKCVNGVC--ICFEGYAGADCSREICPVPCSEEHGTCVDGLC 268
Query: 457 --RDCGSGHQCVRKGCGHVCAPVHQVDVGICV-TECRVDQDCGEGRLCISNGCGRVCFP- 624
D +G C + C + C + G CV EC D+ G C C CF
Sbjct: 269 VCHDGFAGDDCNKPLCLNNC-----YNRGRCVENECVCDEGF-TGEDCSELICPNDCFDR 322
Query: 625 GRREGCEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNG 804
GR C E +G C + C H C H G C V + G C+
Sbjct: 323 GRCINGTCYCEEG---FTGEDCGKPTCPHAC---HTQGRCEEGQCVCDEGFAGVDCSEKR 376
Query: 805 CGRVCSPVQQEDVGICVT-ECKVDQ-----DCGEGR---------RCTSNGCGRVCSPVQ 939
C P + G CV C+ D DCGE + RC + C VC
Sbjct: 377 C-----PADCHNRGRCVDGRCECDDGFTGADCGELKCPNGCSGHGRCVNGQC--VCDEGY 429
Query: 940 QKEAC-ELQCKED 975
E C +L+C D
Sbjct: 430 TGEDCSQLRCPND 442
>ref|NP_001018066.1| very low-density lipoprotein receptor isoform b precursor [Homo
sapiens].
Length = 845
Score = 58.2 bits (139), Expect = 1e-08
Identities = 74/300 (24%), Positives = 105/300 (35%), Gaps = 41/300 (13%)
Frame = +1
Query: 115 GICVT---ECKVDQDCGAG---RRCTSNGCGRV--------CSPIRRREACEHQCREDRD 252
G C+T +C D+DC G + C C C P R + C D D
Sbjct: 43 GRCITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNNGQCVPSRWK------CDGDPD 96
Query: 253 CGSGHQCVRKGCGHVCAPVHQVDVGICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREA 432
C G + C +H++ G + C PV R
Sbjct: 97 CEDGSDESPEQCHMRTCRIHEISCGAHSTQ---------------------CIPVSWR-- 133
Query: 433 CEHQCREDRDCGSGHQCVRKGCGHV-CAP-VHQVDVGICVTE---CRVDQDCGEGR---L 588
C + DC SG + CG++ C+P G C++ C DC +G
Sbjct: 134 ----CDGENDCDSGED--EENCGNITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELD 187
Query: 589 CISNGCGRVCFPGRREGC---EHQCREDRDCG-----SGHQCVRKGCGHVCAPVHQV--- 735
C CG F C C +D DC S QC R+ H P ++
Sbjct: 188 CAPPTCGAHEFQCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCG 247
Query: 736 -GICVTE---CNVDQDCGEGRQCTSNGCGRVCSPVQQE-DVGICV---TECKVDQDCGEG 891
G C+ + C+ D DC +G N R C P Q E + G C+ +C +DC +G
Sbjct: 248 SGECIHKKWRCDGDPDCKDGSD-EVNCPSRTCRPDQFECEDGSCIHGSRQCNGIRDCVDG 306
Score = 49.3 bits (116), Expect = 6e-06
Identities = 62/254 (24%), Positives = 84/254 (33%), Gaps = 48/254 (18%)
Frame = +1
Query: 298 CAPVH-QVDVGICVM---ECRVDQDCGEG---RLCISNGCGRVCFPVRRREACEHQ--CR 450
C P Q G C+ +C D+DC +G + C+ C F + + C
Sbjct: 33 CEPSQFQCTNGRCITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNNGQCVPSRWKCD 92
Query: 451 EDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTEC-----RVD--QDCGEGRLCISNGCG 609
D DC G + C +H++ G T+C R D DC G CG
Sbjct: 93 GDPDCEDGSDESPEQCHMRTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGE--DEENCG 150
Query: 610 RV--------CFPGRREGCEHQCREDRDCGSGH---QCVRKGCG--------HVCAPVHQ 732
+ C GR C DC G C CG C P+
Sbjct: 151 NITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCAPPTCGAHEFQCSTSSCIPISW 210
Query: 733 VGICVTECNVDQDCGEGRQCTSNGCGR------VCSPVQ-QEDVGICVTE---CKVDQDC 882
V C+ D DC + + CGR C + Q G C+ + C D DC
Sbjct: 211 V------CDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCGSGECIHKKWRCDGDPDC 264
Query: 883 GEGR---RCTSNGC 915
+G C S C
Sbjct: 265 KDGSDEVNCPSRTC 278
>ref|NP_003374.3| very low-density lipoprotein receptor isoform a precursor [Homo
sapiens].
Length = 873
Score = 58.2 bits (139), Expect = 1e-08
Identities = 74/300 (24%), Positives = 105/300 (35%), Gaps = 41/300 (13%)
Frame = +1
Query: 115 GICVT---ECKVDQDCGAG---RRCTSNGCGRV--------CSPIRRREACEHQCREDRD 252
G C+T +C D+DC G + C C C P R + C D D
Sbjct: 43 GRCITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNNGQCVPSRWK------CDGDPD 96
Query: 253 CGSGHQCVRKGCGHVCAPVHQVDVGICVMECRVDQDCGEGRLCISNGCGRVCFPVRRREA 432
C G + C +H++ G + C PV R
Sbjct: 97 CEDGSDESPEQCHMRTCRIHEISCGAHSTQ---------------------CIPVSWR-- 133
Query: 433 CEHQCREDRDCGSGHQCVRKGCGHV-CAP-VHQVDVGICVTE---CRVDQDCGEGR---L 588
C + DC SG + CG++ C+P G C++ C DC +G
Sbjct: 134 ----CDGENDCDSGED--EENCGNITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELD 187
Query: 589 CISNGCGRVCFPGRREGC---EHQCREDRDCG-----SGHQCVRKGCGHVCAPVHQV--- 735
C CG F C C +D DC S QC R+ H P ++
Sbjct: 188 CAPPTCGAHEFQCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCG 247
Query: 736 -GICVTE---CNVDQDCGEGRQCTSNGCGRVCSPVQQE-DVGICV---TECKVDQDCGEG 891
G C+ + C+ D DC +G N R C P Q E + G C+ +C +DC +G
Sbjct: 248 SGECIHKKWRCDGDPDCKDGSD-EVNCPSRTCRPDQFECEDGSCIHGSRQCNGIRDCVDG 306
Score = 49.3 bits (116), Expect = 6e-06
Identities = 62/254 (24%), Positives = 84/254 (33%), Gaps = 48/254 (18%)
Frame = +1
Query: 298 CAPVH-QVDVGICVM---ECRVDQDCGEG---RLCISNGCGRVCFPVRRREACEHQ--CR 450
C P Q G C+ +C D+DC +G + C+ C F + + C
Sbjct: 33 CEPSQFQCTNGRCITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNNGQCVPSRWKCD 92
Query: 451 EDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTEC-----RVD--QDCGEGRLCISNGCG 609
D DC G + C +H++ G T+C R D DC G CG
Sbjct: 93 GDPDCEDGSDESPEQCHMRTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGE--DEENCG 150
Query: 610 RV--------CFPGRREGCEHQCREDRDCGSGH---QCVRKGCG--------HVCAPVHQ 732
+ C GR C DC G C CG C P+
Sbjct: 151 NITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCAPPTCGAHEFQCSTSSCIPISW 210
Query: 733 VGICVTECNVDQDCGEGRQCTSNGCGR------VCSPVQ-QEDVGICVTE---CKVDQDC 882
V C+ D DC + + CGR C + Q G C+ + C D DC
Sbjct: 211 V------CDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCGSGECIHKKWRCDGDPDC 264
Query: 883 GEGR---RCTSNGC 915
+G C S C
Sbjct: 265 KDGSDEVNCPSRTC 278
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,672,270
Number of extensions: 1729241
Number of successful extensions: 7355
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 6669
Number of HSP's successfully gapped: 52
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012519
(1027 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 192 3e-46
>Sscrofa_Chr12
|| Length = 63588571
Score = 192 bits (97), Expect = 3e-46
Identities = 103/105 (98%)
Strand = Plus / Minus
Query: 5 ttaccaccgaccagtcctcagccggcaacatgaagctgggtggcctctgcctcctgctcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41126829 ttaccaccgaccagtcctcagccggcaacatgaagctgggtggcctctgcctcctgctcc 41126770
Query: 65 tcctcgccgtccttctcaccctcaatgcagagctccaggcagttg 109
|||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 41126769 tcctcgccgtccttctcaccctcaatgcagagttccaagcagttg 41126725
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,846,409
Number of extensions: 181
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 1
Length of query: 1027
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1006
Effective length of database: 2,808,413,156
Effective search space: 2825263634936
Effective search space used: 2825263634936
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)