Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012520
(566 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002695670.1| PREDICTED: extracellular peptidase inhibitor... 83 1e-16
Alignment gi|XP_002702143.1| PREDICTED: mCG55370-like [Bos taurus]. 83 1e-16
Alignment gi|XP_002695690.1| PREDICTED: hypothetical protein [Bos taurus]. 82 3e-16
Alignment gi|XP_593741.4| PREDICTED: hypothetical protein [Bos taurus]. 82 3e-16
Alignment gi|NP_001192207.1| extracellular peptidase inhibitor [Bos tauru... 79 2e-15
Alignment gi|XP_002692529.1| PREDICTED: WAP four-disulfide core domain 3 ... 54 7e-08
Alignment gi|XP_001789331.1| PREDICTED: WAP four-disulfide core domain 3 ... 54 7e-08
Alignment gi|NP_001077174.1| Kallmann syndrome 1 protein [Bos taurus]. 54 9e-08
Alignment gi|XP_590087.3| PREDICTED: secretory leukocyte peptidase inhibi... 49 2e-06
Alignment gi|XP_002692520.1| PREDICTED: secretory leukocyte peptidase inh... 49 4e-06
>ref|XP_002695670.1| PREDICTED: extracellular peptidase inhibitor-like [Bos taurus].
Length = 146
Score = 83.2 bits (204), Expect = 1e-16
Identities = 32/47 (68%), Positives = 37/47 (78%)
Frame = +1
Query: 127 EQRPGKCPVLPKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQTAV 267
+Q G CP +PKGT+G+C E C GDDSCP G KCCSNGCGH C+TAV
Sbjct: 30 QQELGFCPEVPKGTVGICVEMCSGDDSCPEGMKCCSNGCGHVCKTAV 76
>ref|XP_002702143.1| PREDICTED: mCG55370-like [Bos taurus].
Length = 93
Score = 83.2 bits (204), Expect = 1e-16
Identities = 32/47 (68%), Positives = 37/47 (78%)
Frame = +1
Query: 127 EQRPGKCPVLPKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQTAV 267
+Q G CP +PKGT+G+C E C GDDSCP G KCCSNGCGH C+TAV
Sbjct: 30 QQELGFCPEVPKGTVGICVEMCSGDDSCPEGMKCCSNGCGHVCKTAV 76
>ref|XP_002695690.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 431
Score = 82.0 bits (201), Expect = 3e-16
Identities = 40/65 (61%), Positives = 43/65 (66%)
Frame = +1
Query: 109 PVKFPVEQRPGKCPVLPKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQTAVPDEKTFP 288
P + EQRPG CP +P+G G CAE C GD SCP GQKCCSNGCG SCQ VPD F
Sbjct: 369 PTQDRQEQRPGTCPRVPEGMFGTCAERCTGDGSCPPGQKCCSNGCGKSCQ--VPD-LDFT 425
Query: 289 SRLDD 303
LDD
Sbjct: 426 ISLDD 430
Score = 47.4 bits (111), Expect = 8e-06
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +1
Query: 157 PKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSC 255
P ++G+C E C D C +G+KC SNGCGH C
Sbjct: 93 PLMSVGICVEQCREDQDCAAGEKCISNGCGHVC 125
Score = 47.4 bits (111), Expect = 8e-06
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +1
Query: 157 PKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQTA 264
P ++G+C E C D C +G+KC SNGCGH C A
Sbjct: 229 PLMSVGVCVEQCREDRDCAAGEKCVSNGCGHVCSPA 264
>ref|XP_593741.4| PREDICTED: hypothetical protein [Bos taurus].
Length = 431
Score = 82.0 bits (201), Expect = 3e-16
Identities = 40/65 (61%), Positives = 43/65 (66%)
Frame = +1
Query: 109 PVKFPVEQRPGKCPVLPKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQTAVPDEKTFP 288
P + EQRPG CP +P+G G CAE C GD SCP GQKCCSNGCG SCQ VPD F
Sbjct: 369 PTQDRQEQRPGTCPRVPEGMFGTCAERCTGDGSCPPGQKCCSNGCGKSCQ--VPD-LDFT 425
Query: 289 SRLDD 303
LDD
Sbjct: 426 ISLDD 430
Score = 47.4 bits (111), Expect = 8e-06
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +1
Query: 157 PKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSC 255
P ++G+C E C D C +G+KC SNGCGH C
Sbjct: 93 PLMSVGICVEQCREDQDCAAGEKCISNGCGHVC 125
Score = 47.4 bits (111), Expect = 8e-06
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +1
Query: 157 PKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQTA 264
P ++G+C E C D C +G+KC SNGCGH C A
Sbjct: 229 PLMSVGVCVEQCREDRDCAAGEKCVSNGCGHVCSPA 264
>ref|NP_001192207.1| extracellular peptidase inhibitor [Bos taurus].
Length = 93
Score = 79.3 bits (194), Expect = 2e-15
Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 2/53 (3%)
Frame = +1
Query: 115 KFPV--EQRPGKCPVLPKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQTAV 267
K PV +++PG CP +PKGT+G+CAE C GD SCP KCCSNGCGH C+ AV
Sbjct: 24 KSPVKGQRKPGFCPEVPKGTVGICAELCSGDYSCPGRAKCCSNGCGHVCKAAV 76
>ref|XP_002692529.1| PREDICTED: WAP four-disulfide core domain 3 [Bos taurus].
Length = 197
Score = 54.3 bits (129), Expect = 7e-08
Identities = 22/39 (56%), Positives = 24/39 (61%)
Frame = +1
Query: 139 GKCPVLPKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSC 255
G+CP P C E C GD SCP G KCCS GCGH+C
Sbjct: 101 GECPADPLP----CEELCDGDTSCPQGHKCCSTGCGHAC 135
Score = 47.8 bits (112), Expect = 6e-06
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 157 PKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQTAVP 270
PK +GLC C D++C +G+KCC +GCG C P
Sbjct: 148 PKALVGLCIVNCMVDENCQAGEKCCKSGCGRFCVPPSP 185
>ref|XP_001789331.1| PREDICTED: WAP four-disulfide core domain 3 [Bos taurus].
Length = 197
Score = 54.3 bits (129), Expect = 7e-08
Identities = 22/39 (56%), Positives = 24/39 (61%)
Frame = +1
Query: 139 GKCPVLPKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSC 255
G+CP P C E C GD SCP G KCCS GCGH+C
Sbjct: 101 GECPADPLP----CEELCDGDTSCPQGHKCCSTGCGHAC 135
Score = 47.8 bits (112), Expect = 6e-06
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 157 PKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQTAVP 270
PK +GLC C D++C +G+KCC +GCG C P
Sbjct: 148 PKALVGLCIVNCMVDENCQAGEKCCKSGCGRFCVPPSP 185
>ref|NP_001077174.1| Kallmann syndrome 1 protein [Bos taurus].
Length = 210
Score = 53.9 bits (128), Expect = 9e-08
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 112 VKFPVEQRPGKCPVLPK--GTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQ 258
+K+ + + G CP K G C E C DD C +KCCSNGCGH+CQ
Sbjct: 123 LKYILSVKQGDCPSPEKASGFAAACVESCDADDECSGVKKCCSNGCGHTCQ 173
>ref|XP_590087.3| PREDICTED: secretory leukocyte peptidase inhibitor [Bos taurus].
Length = 141
Score = 49.3 bits (116), Expect = 2e-06
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +1
Query: 121 PVEQRPGKCPVLPKGTIGLC-----AEFCFGDDSCPSGQKCCSNGCGHSCQTAVPDEKTF 285
PV+ PGKCPV+ G C + C D C +G KCCS CG+SC V D TF
Sbjct: 82 PVKVTPGKCPVVT----GHCESHKHVDDCQNDSHCLNGFKCCSGPCGNSCVLPVKD-STF 136
Query: 286 PSRL 297
P ++
Sbjct: 137 PGQI 140
>ref|XP_002692520.1| PREDICTED: secretory leukocyte peptidase inhibitor-like [Bos
taurus].
Length = 141
Score = 48.5 bits (114), Expect = 4e-06
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +1
Query: 121 PVEQRPGKCPVLPKGTIGLC-----AEFCFGDDSCPSGQKCCSNGCGHSCQTAVPDEKTF 285
PV+ PGKCPV+ G C + C D C +G KCCS CG+SC V D TF
Sbjct: 82 PVKVTPGKCPVVT----GHCESHKHVDDCQNDSHCLNGFKCCSGPCGNSCVLPVKD-STF 136
Query: 286 PSR 294
P +
Sbjct: 137 PGQ 139
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 19,160,311
Number of extensions: 497869
Number of successful extensions: 1975
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1965
Number of HSP's successfully gapped: 16
Length of query: 188
Length of database: 17,681,374
Length adjustment: 96
Effective length of query: 92
Effective length of database: 14,504,926
Effective search space: 1334453192
Effective search space used: 1334453192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Animal-Genome cDNA 20110601C-012520
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012520
(566 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853595.1| PREDICTED: similar to Anosmin 1 precursor (Kall... 53 2e-07
>ref|XP_853595.1| PREDICTED: similar to Anosmin 1 precursor (Kallmann syndrome
protein) (Adhesion molecule-like X-linked) [Canis
familiaris].
Length = 713
Score = 52.8 bits (125), Expect = 2e-07
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 112 VKFPVEQRPGKCPVLPK--GTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQ 258
+K+ + + G CP K G C E C D+ C +KCCSNGCGH+CQ
Sbjct: 123 LKYILSVKQGDCPAPEKASGFAAACVESCEADNECSGVKKCCSNGCGHTCQ 173
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 19,735,737
Number of extensions: 466614
Number of successful extensions: 2053
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2051
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 18,874,504
Length adjustment: 97
Effective length of query: 91
Effective length of database: 15,640,912
Effective search space: 1423322992
Effective search space used: 1423322992
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012520
(566 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928820.2| PREDICTED: WAP four-disulfide core domain pr... 54 4e-08
Alignment gi|XP_001925105.2| PREDICTED: anosmin-1 [Sus scrofa]. 52 3e-07
>ref|XP_001928820.2| PREDICTED: WAP four-disulfide core domain protein 3 isoform 1 [Sus
scrofa].
Length = 113
Score = 54.3 bits (129), Expect = 4e-08
Identities = 22/40 (55%), Positives = 25/40 (62%)
Frame = +1
Query: 139 GKCPVLPKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQ 258
G+CP P C E C GD SCP G KCCS GCGH+C+
Sbjct: 6 GECPTDPLP----CEELCDGDASCPQGHKCCSTGCGHACR 41
>ref|XP_001925105.2| PREDICTED: anosmin-1 [Sus scrofa].
Length = 682
Score = 51.6 bits (122), Expect = 3e-07
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 112 VKFPVEQRPGKCPVLPK--GTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQ 258
+K+ + + G CP K G C E C D+ C +KCCSNGCGH+CQ
Sbjct: 123 LKYILSVKQGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQ 173
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 12,705,178
Number of extensions: 379031
Number of successful extensions: 1091
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1083
Number of HSP's successfully gapped: 2
Length of query: 188
Length of database: 11,343,932
Length adjustment: 93
Effective length of query: 95
Effective length of database: 9,028,511
Effective search space: 857708545
Effective search space used: 857708545
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012520
(566 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001075426.1| activated macrophage/microglia WAP domain pr... 64 1e-10
Alignment gi|XP_003086827.1| PREDICTED: extracellular peptidase inhibitor... 64 1e-10
Alignment gi|NP_031995.3| extracellular peptidase inhibitor precursor [Mu... 63 1e-10
Alignment gi|NP_082237.1| WAP four-disulfide core domain 3 [Mus musculus]. 56 2e-08
Alignment gi|NP_899072.1| WDNM1-like protein [Mus musculus]. 50 1e-06
>ref|NP_001075426.1| activated macrophage/microglia WAP domain protein precursor [Mus
musculus].
Length = 76
Score = 63.5 bits (153), Expect = 1e-10
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = +1
Query: 130 QRPGKCPVLPKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQTAV 267
++PG CP ++G+C + C GD SCP KCCSN CGH C+T V
Sbjct: 30 EKPGACPKPSPESVGICVDQCSGDGSCPGNMKCCSNSCGHVCKTPV 75
>ref|XP_003086827.1| PREDICTED: extracellular peptidase inhibitor-like [Mus musculus].
Length = 76
Score = 63.5 bits (153), Expect = 1e-10
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = +1
Query: 130 QRPGKCPVLPKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQTAV 267
++PG CP ++G+C + C GD SCP KCCSN CGH C+T V
Sbjct: 30 EKPGACPKPSPESVGICVDQCSGDGSCPGNMKCCSNSCGHVCKTPV 75
>ref|NP_031995.3| extracellular peptidase inhibitor precursor [Mus musculus].
Length = 74
Score = 63.2 bits (152), Expect = 1e-10
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +1
Query: 127 EQRPGKCPVLPKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQTAV 267
+++PG CP P + G C E C GD SC KCCSNGCGH+C+ V
Sbjct: 27 KEKPGACPKPPPRSFGTCDERCTGDGSCSGNMKCCSNGCGHACKPPV 73
>ref|NP_082237.1| WAP four-disulfide core domain 3 [Mus musculus].
Length = 130
Score = 56.2 bits (134), Expect = 2e-08
Identities = 22/40 (55%), Positives = 26/40 (65%)
Frame = +1
Query: 139 GKCPVLPKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQ 258
G+CP P C E C GD+SCP G KCCS GCGH+C+
Sbjct: 23 GECPADPLP----CQELCTGDESCPQGHKCCSTGCGHACR 58
Score = 47.4 bits (111), Expect = 7e-06
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1
Query: 133 RPGKCPVLPKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSC 255
R G+CP + +GLC C D++C SG++CC +GCG C
Sbjct: 65 RDGQCPRI---LVGLCIVQCMMDENCQSGERCCKSGCGRFC 102
>ref|NP_899072.1| WDNM1-like protein [Mus musculus].
Length = 63
Score = 50.1 bits (118), Expect = 1e-06
Identities = 27/63 (42%), Positives = 32/63 (50%)
Frame = +1
Query: 73 SSEVQELQAAVRPVKFPVEQRPGKCPVLPKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHS 252
S EVQELQAAVRP++ +G CAE C GD C ++C S GC H
Sbjct: 16 SLEVQELQAAVRPLQL----------------LGTCAELCRGDWDCGPEEQCVSIGCSHI 59
Query: 253 CQT 261
C T
Sbjct: 60 CTT 62
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 16,650,461
Number of extensions: 396560
Number of successful extensions: 1686
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1678
Number of HSP's successfully gapped: 6
Length of query: 188
Length of database: 15,617,559
Length adjustment: 95
Effective length of query: 93
Effective length of database: 12,764,139
Effective search space: 1187064927
Effective search space used: 1187064927
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012520
(566 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_542181.1| WAP four-disulfide core domain protein 3 precur... 51 8e-07
Alignment gi|NP_000207.2| anosmin-1 precursor [Homo sapiens]. 50 1e-06
>ref|NP_542181.1| WAP four-disulfide core domain protein 3 precursor [Homo sapiens].
Length = 231
Score = 50.8 bits (120), Expect = 8e-07
Identities = 21/39 (53%), Positives = 23/39 (58%)
Frame = +1
Query: 139 GKCPVLPKGTIGLCAEFCFGDDSCPSGQKCCSNGCGHSC 255
G+CP P C E C GD SCP G KCCS GCG +C
Sbjct: 124 GECPADPLP----CEELCDGDASCPQGHKCCSTGCGRTC 158
>ref|NP_000207.2| anosmin-1 precursor [Homo sapiens].
Length = 680
Score = 50.4 bits (119), Expect = 1e-06
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 112 VKFPVEQRPGKCPVLPK--GTIGLCAEFCFGDDSCPSGQKCCSNGCGHSCQ 258
+K+ + + G CP K G C E C D+ C +KCCSNGCGH+CQ
Sbjct: 123 LKYILLVKQGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQ 173
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 19,492,434
Number of extensions: 463468
Number of successful extensions: 1910
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1900
Number of HSP's successfully gapped: 2
Length of query: 188
Length of database: 18,297,164
Length adjustment: 97
Effective length of query: 91
Effective length of database: 15,099,656
Effective search space: 1374068696
Effective search space used: 1374068696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012520
(566 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892301.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 196 9e-48
>gb|GL892301.1| Sus scrofa unplaced genomic scaffold chrU_scaffold118
Length = 158
Score = 196 bits (99), Expect = 9e-48
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 418 tctagaataacttggcttaagggttgaattctggcaattgtttaaggaatagtgcttgca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tctagaataacttggcttaagggttgaattctggcaattgtttaaggaatagtgcttgca 99
Query: 478 aaggatccttcttctgaataaaacgacttctctggcatt 516
|||||||||||||||||||||||||||||||||||||||
Sbjct: 98 aaggatccttcttctgaataaaacgacttctctggcatt 60
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 17,330,568
Number of extensions: 396
Number of successful extensions: 396
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 545
Effective length of database: 2,808,413,156
Effective search space: 1530585170020
Effective search space used: 1530585170020
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)