Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012522
(1140 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546739.2| PREDICTED: similar to EGF-like-domain, multiple... 45 3e-09
Alignment gi|XP_531893.2| PREDICTED: similar to MEGF10 protein [Canis fam... 40 4e-08
Alignment gi|NP_001003241.1| WAP four-disulfide core domain protein 2 pre... 50 3e-06
Alignment gi|XP_534452.2| PREDICTED: similar to Protein KIAA1404 [Canis f... 50 3e-06
Alignment gi|XP_534437.2| PREDICTED: similar to WAP four-disulfide core d... 50 4e-06
>ref|XP_546739.2| PREDICTED: similar to EGF-like-domain, multiple 3 [Canis familiaris].
Length = 1534
Score = 41.2 bits (95), Expect(2) = 3e-09
Identities = 28/109 (25%), Positives = 38/109 (34%)
Frame = +3
Query: 642 CEHQCREDRDCGSGHRCVRNGCGHVCAPVHQVGICVTECNVDQDCGGGKQCTSNGCGRVC 821
CEH C ++R C HVC+ G+C D C G T C + C
Sbjct: 1297 CEHGCPQNR--------FGVNCEHVCS-CRNGGLCHAS---DGSCSCGLGWTGPNCEQAC 1344
Query: 822 SPVHQVDVGICVTECQVDQDCGEGRPCTSNGCGRVCSPAQQKEACEHQC 968
P H C+++ C C C P +AC+H C
Sbjct: 1345 PPGHYG------AACRLECSCQNNGTCEPTTGACRCGPGFYGQACQHAC 1387
Score = 38.9 bits (89), Expect(2) = 3e-09
Identities = 41/164 (25%), Positives = 55/164 (33%)
Frame = +2
Query: 137 VDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQV 316
V +C R T GC + C P E+C G +C G C P
Sbjct: 1152 VTGECRCPRGFTGPGCEQACPPGTFGESC------------GQKCHCPGENQACHPA--- 1196
Query: 317 DVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCREDRDCGSGHQCVRKGC 496
+G CV C AG +GC + C P + CE C C +G C
Sbjct: 1197 -LGTCV--------CAAGYH--GSGCRQRCPPGRFGPGCEQPC----GCLNGGSCDAATG 1241
Query: 497 GHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGR 628
+C G +C + C +G GC VC G+
Sbjct: 1242 ACLC------PAGFLGADCSL--SCPQGH--FGPGCAHVCGCGQ 1275
Score = 45.1 bits (105), Expect(2) = 7e-08
Identities = 45/174 (25%), Positives = 58/174 (33%), Gaps = 15/174 (8%)
Frame = +2
Query: 149 CGAGRRCT----SNGCGRVCSPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQV 316
CG G+ T + C C P CEH C ++R C HVC+ +
Sbjct: 1271 CGCGQAVTCDPVTGSCA--CPPGTTGTHCEHGCPQNR--------FGVNCEHVCSCRNG- 1319
Query: 317 DVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCREDRD---------CGS 469
G+C D C G T C + C P AC +C + C
Sbjct: 1320 --GLCHAS---DGSCSCGLGWTGPNCEQACPPGHYGAACRLECSCQNNGTCEPTTGACRC 1374
Query: 470 GHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLC--ISNGCGRVCFPG 625
G + C H C P G CR +C G C +S C VC G
Sbjct: 1375 GPGFYGQACQHACPP------GFHGAGCRAACECQHGASCDPVSGQC--VCPAG 1420
Score = 41.6 bits (96), Expect(2) = 7e-08
Identities = 46/166 (27%), Positives = 53/166 (31%), Gaps = 5/166 (3%)
Frame = +2
Query: 149 CGAGRRCTSNGCGRVCSPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGI 328
C T C R C R C H C C GH C V G+
Sbjct: 811 CSCAPGWTGLSCQRACDGGRWGPDCSHPCT----CSPGHG----SCDAVS--------GL 854
Query: 329 CVTEC-----KVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCREDRDCGSGHQCVRKG 493
CV E + +Q C G GCGR C CEH D G+ C
Sbjct: 855 CVCEAGYTGPRCEQRCPQGH--FGPGCGRQCQ-------CEHGAACDHVSGAC-TCPAGW 904
Query: 494 CGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRQ 631
G +C G +CR DC G C S +C GRQ
Sbjct: 905 RGALCE--RACPAGFFGLDCRGVCDCAAGAPCDSVSGSCLCPAGRQ 948
Score = 33.9 bits (76), Expect(2) = 7e-08
Identities = 31/113 (27%), Positives = 38/113 (33%), Gaps = 5/113 (4%)
Frame = +3
Query: 648 HQCREDRDCGSGHRC--VRNGCGHVCAPVHQVGICVTEC---NVDQDCGGGKQCTSNGCG 812
H C + C +G C V C C P C+ C + Q+C C G
Sbjct: 963 HNCSQTCSCFNGASCDPVHGQCH--CGPGWMGSTCLEACPTGSYGQNCQHTCLCQHGG-- 1018
Query: 813 RVCSPVHQVDVGICVTECQVDQDCGEGRPCTSNGCGRVCSPAQQKEACEHQCR 971
C PV G C C EG T C C P + C+H CR
Sbjct: 1019 -TCDPVS----GHCT--------CPEG--WTGLACEEECLPGRFGAGCKHSCR 1056
Score = 30.4 bits (67), Expect(2) = 7e-08
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Frame = +3
Query: 636 EGCE-----HQCREDRDCGSGHRC--VRNGCGHVCAPVHQVGICVTECNVDQDCGGGKQC 794
+GCE CRE DC G C + C +C P C +C D G
Sbjct: 1428 KGCEPGSFGEGCREHCDCEMGAACDPITGQC--LCPPGRTGATCDLDCRPDFFGPGCALR 1485
Query: 795 TSNGCGRVCSPV 830
S G G C PV
Sbjct: 1486 CSCGGGAACDPV 1497
>ref|XP_531893.2| PREDICTED: similar to MEGF10 protein [Canis familiaris].
Length = 1548
Score = 40.0 bits (92), Expect(2) = 4e-08
Identities = 51/204 (25%), Positives = 70/204 (34%), Gaps = 39/204 (19%)
Frame = +2
Query: 131 CKVDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCR---------EDRDCGSGHQCVRKG 283
C + C G C + C+P R + CE C+ E DC C
Sbjct: 906 CNLTCQCLHGGACNTQDGTCTCAPGWRGDKCELPCQDGTYGLNCAERCDCSHADGC-HST 964
Query: 284 CGHV-CAP----VHQVDV---GICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEH 439
GH C P VH V G C + C G C+ + C+P R C+
Sbjct: 965 TGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 1024
Query: 440 QCREDRDCGSGHQCVR--KGCGHVCAPVHQVDVGIC-----VTECRVDQDCGEGRL---- 586
C GH+C + C H P H + G+C T ++ C GR
Sbjct: 1025 ICSPG---FYGHRCSQTCPQCVHSSGPCHHI-TGLCDCLPGFTGALCNEVCPSGRFGKNC 1080
Query: 587 -----CISNG-CGRV-----CFPG 625
C +NG C + C+PG
Sbjct: 1081 AGVCTCTNNGTCNPIDRSCQCYPG 1104
Score = 36.2 bits (82), Expect(2) = 4e-08
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 5/107 (4%)
Frame = +3
Query: 663 DRDCGSGHRCVRNGCGHVCAPVHQVGICVTECNVDQDC-----GGGKQCTSNGCGRVCSP 827
DR C + + C C P H C+ CN G +CT G C+
Sbjct: 1096 DRSCQCYPGWIGSDCSQPCPPAHWGPNCIHTCNCHNGAFCSAYDGECKCTPGWTGLYCT- 1154
Query: 828 VHQVDVGICVTECQVDQDCGEGRPCTSNGCGRVCSPAQQKEACEHQC 968
+ +G +C + C G C C + CE +C
Sbjct: 1155 -QRCPLGFYGKDCALICQCQNGADCDHISGQCTCRTGFMGKHCEQKC 1200
Score = 36.6 bits (83), Expect(2) = 4e-07
Identities = 45/173 (26%), Positives = 56/173 (32%), Gaps = 13/173 (7%)
Frame = +2
Query: 137 VDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCREDRDCGSGHQC--VRKGC-------G 289
V +C T C +C P + CE +C C +G C V C G
Sbjct: 617 VTGECRCPPGYTGAFCEDLCPPGKHGPQCEQRC----PCQNGGICHHVTGECSCPSGWLG 672
Query: 290 HVCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCREDR---D 460
VC G C + C G C + CSP E C+ +C
Sbjct: 673 TVCG--QPCPEGRFGKNCSQECQCHNGGTCDAATGQCHCSPGYTGERCQDECPVGTYGVR 730
Query: 461 CGSGHQCVRKG-CGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVC 616
C QCV G C HV G C+ E + E RLC G C
Sbjct: 731 CAETCQCVNGGKCYHVS--------GSCLCEAGFAGEHCEARLCPEGLYGIKC 775
Score = 36.2 bits (82), Expect(2) = 4e-07
Identities = 41/149 (27%), Positives = 57/149 (38%), Gaps = 21/149 (14%)
Frame = +3
Query: 612 SASQGDKREGCEHQCREDRDCGSGHRC--VRNGCGHVCAPVHQVGICVTECNVDQDCGGG 785
+ S G E C+ C C +G C V C +CAP + C C ++ G
Sbjct: 810 TCSPGFFGEACQQIC----SCHNGADCDSVTGKC--ICAPGFKGIDCSIPCPLETY---G 860
Query: 786 KQCTSN-GCGR--VCSPV----------HQVDVGICVTE------CQVDQDCGEGRPCTS 908
C+S GC VCSPV H VD I C + C G C +
Sbjct: 861 INCSSLCGCKNDAVCSPVDGSCTCKAGWHGVDCSISCPSGTWGFSCNLTCQCLHGGACNT 920
Query: 909 NGCGRVCSPAQQKEACEHQCREDRTVGVD 995
C+P + + CE C +D T G++
Sbjct: 921 QDGTCTCAPGWRGDKCELPC-QDGTYGLN 948
>ref|NP_001003241.1| WAP four-disulfide core domain protein 2 precursor [Canis lupus
familiaris].
Length = 124
Score = 50.4 bits (119), Expect = 3e-06
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Frame = +3
Query: 642 CEHQCREDRDCGSGHRCVRNGCGHVC--------------APVHQVGICVTECNVDQDCG 779
C +C D C +C + GC +C Q+G+C +C VD C
Sbjct: 45 CTQECVSDAQCADNLKCCQAGCATICHLPNEKEGSCPQVNTDFPQLGLCQDQCQVDSHCP 104
Query: 780 GGKQCTSNGCGRV 818
G +C NGCG+V
Sbjct: 105 GLLKCCYNGCGKV 117
Score = 50.1 bits (118), Expect = 4e-06
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Frame = +2
Query: 191 VCSPVRRREACEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVD---VGICV 334
VC ++ C +C D C +C + GC +C P D +G+C
Sbjct: 35 VCPQLQADLNCTQECVSDAQCADNLKCCQAGCATICHLPNEKEGSCPQVNTDFPQLGLCQ 94
Query: 335 TECKVDQDCGAGRRCTSNGCGRV 403
+C+VD C +C NGCG+V
Sbjct: 95 DQCQVDSHCPGLLKCCYNGCGKV 117
Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Frame = +2
Query: 401 VCSPIQRREACEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVD---VGICV 544
VC +Q C +C D C +C + GC +C P D +G+C
Sbjct: 35 VCPQLQADLNCTQECVSDAQCADNLKCCQAGCATICHLPNEKEGSCPQVNTDFPQLGLCQ 94
Query: 545 TECRVDQDCGEGRLCISNGCGRV 613
+C+VD C C NGCG+V
Sbjct: 95 DQCQVDSHCPGLLKCCYNGCGKV 117
>ref|XP_534452.2| PREDICTED: similar to Protein KIAA1404 [Canis familiaris].
Length = 1928
Score = 50.4 bits (119), Expect = 3e-06
Identities = 44/158 (27%), Positives = 61/158 (38%), Gaps = 20/158 (12%)
Frame = +2
Query: 119 CVTECKVDQDCGAGRRCTSNGC------GRVCSPVRRREACEHQCRED--RDCGS----- 259
C T+C DCG T + C R P +R C H+C+E R+C
Sbjct: 1441 CTTKCGTILDCGHPCPGTCHSCFEGRFHERCQQPCKRLLICSHKCQEPCIRECPPCQRTC 1500
Query: 260 GHQCV----RKGCGHVCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRRE 427
++CV +K CG +C+P CV C RC C ++CS R
Sbjct: 1501 QNRCVHSQCKKKCGELCSP--------CVEPCVW--------RCQHYQCTKLCSEPCNRP 1544
Query: 428 ACEHQCREDRDCGSGHQCV---RKGCGHVCAPVHQVDV 532
C C + C GH C+ + C C HQ +V
Sbjct: 1545 PCYVPCTKLLAC--GHPCIGLCGEPCPKKCRVCHQEEV 1580
>ref|XP_534437.2| PREDICTED: similar to WAP four-disulfide core domain protein 8
precursor (Putative protease inhibitor WAP8) [Canis
familiaris].
Length = 260
Score = 50.1 bits (118), Expect = 4e-06
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Frame = +2
Query: 200 PVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICV-----------TECK 346
P + R C C+ D DC +C CG VCA V G C +C
Sbjct: 177 PFKNRMECPASCKGDMDCPKSDKCCESMCGFVCAKAWTVKSGFCPRKPLMCSKIERPKCL 236
Query: 347 VDQDCGAGRRCTSNGCGRVCSPIQR 421
D+DC ++C S+ CG C Q+
Sbjct: 237 QDRDCPVSQKCCSH-CGLKCLESQK 260
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,418,562
Number of extensions: 2127601
Number of successful extensions: 8909
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8608
Number of HSP's successfully gapped: 15
Length of query: 380
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 276
Effective length of database: 15,407,560
Effective search space: 4252486560
Effective search space used: 4252486560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012522
(1140 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002695690.1| PREDICTED: hypothetical protein [Bos taurus]. 283 3e-76
Alignment gi|XP_593741.4| PREDICTED: hypothetical protein [Bos taurus]. 283 3e-76
Alignment gi|XP_002692529.1| PREDICTED: WAP four-disulfide core domain 3 ... 72 7e-13
Alignment gi|XP_001789331.1| PREDICTED: WAP four-disulfide core domain 3 ... 72 7e-13
Alignment gi|NP_777128.1| tenascin-X [Bos taurus]. 47 1e-09
Alignment gi|NP_001039916.2| multiple EGF-like-domains 10 [Bos taurus]. 41 2e-08
Alignment gi|XP_002689022.1| PREDICTED: multiple EGF-like-domains 10 [Bos... 41 2e-08
Alignment gi|XP_001788534.1| PREDICTED: multiple EGF-like-domains 10 [Bos... 41 2e-08
Alignment gi|NP_001069958.1| WAP four-disulfide core domain protein 2 [Bo... 55 2e-07
Alignment gi|XP_002685354.1| PREDICTED: low-density lipoprotein receptor-... 44 3e-07
>ref|XP_002695690.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 431
Score = 283 bits (723), Expect = 3e-76
Identities = 146/352 (41%), Positives = 193/352 (54%), Gaps = 9/352 (2%)
Frame = +2
Query: 110 VGICVTECKVDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCREDRDCGSGHQCVRKGCG 289
+G+CV +C+ DQDC AG +C SNGCG VCSP + C +C EDRDCG G QCV+ GC
Sbjct: 29 IGVCVEQCREDQDCVAGEKCISNGCGHVCSPAPQATICSLECSEDRDCGRGKQCVQDGCQ 88
Query: 290 HVCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCREDRDCGS 469
VC+P+ + VGICV +C+ DQDC AG +C SNGCG VCSP+ + C +C EDRDCG
Sbjct: 89 RVCSPL--MSVGICVEQCREDQDCAAGEKCISNGCGHVCSPVPQATICSLECSEDRDCGR 146
Query: 470 GHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRQERGLRA 649
G QCV+ GC VC+P+ + VG+CV +CR DQDC G C+SNGCG VC P Q A
Sbjct: 147 GKQCVQDGCQRVCSPL--MSVGVCVEQCREDQDCAAGEKCVSNGCGHVCSPVPQ-----A 199
Query: 650 PVQRRQGLWEWTSMREEWLWARLRPRPSSRYLCDGV------QRRPGLWGRKTMHQQRVW 811
+ R+ + R + R S + GV + R G K +
Sbjct: 200 TICSRECSEDRDCGRGKQCVQDGCRRVCSPLMSVGVCVEQCREDRDCAAGEKCVSNGCGH 259
Query: 812 ACLLPRPSSRCRYLCDGVPGRPGLWGRKTMHQQWMWPCLLPSPAKRGLRAPMQR-RQDCG 988
C +S C + C R GR+ + + C A G+ R DCG
Sbjct: 260 VCSPAPQASICEFQC--FRDRDCGAGRQCVSEGCNRVCSPAPEASIGICVQRCRGHWDCG 317
Query: 989 SGHHCLRKGCGHVCPPIPSG--SICVTECNVNQDCGAGRRCTXNGCGRVCSP 1138
+G C+R+GC +C P+ + IC+ +C ++DC AG RC NGCGRVCSP
Sbjct: 318 AGERCIRRGCSRICSPVRTAGVGICLDQCQGHRDCPAGSRCVSNGCGRVCSP 369
Score = 257 bits (656), Expect = 2e-68
Identities = 138/360 (38%), Positives = 177/360 (49%), Gaps = 17/360 (4%)
Frame = +2
Query: 104 VDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCREDRDCGSGHQCVRKG 283
+ VGICV +C+ DQDC AG +C SNGCG VCSPV + C +C EDRDCG G QCV+ G
Sbjct: 95 MSVGICVEQCREDQDCAAGEKCISNGCGHVCSPVPQATICSLECSEDRDCGRGKQCVQDG 154
Query: 284 CGHVCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCREDRDC 463
C VC+P+ + VG+CV +C+ DQDC AG +C SNGCG VCSP+ + C +C EDRDC
Sbjct: 155 CQRVCSPL--MSVGVCVEQCREDQDCAAGEKCVSNGCGHVCSPVPQATICSRECSEDRDC 212
Query: 464 GSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRQERGL 643
G G QCV+ GC VC+P+ + VG+CV +CR D+DC G C+SNGCG VC P Q
Sbjct: 213 GRGKQCVQDGCRRVCSPL--MSVGVCVEQCREDRDCAAGEKCVSNGCGHVCSPAPQASIC 270
Query: 644 RAPVQRRQGLWEWTSMREEWLWARLRPRP-SSRYLCDGVQRRPGLWGRKTMHQQRVWACL 820
R + E P P +S +C VQR G W + C+
Sbjct: 271 EFQCFRDRDCGAGRQCVSEGCNRVCSPAPEASIGIC--VQRCRGHWDCGAGER-----CI 323
Query: 821 LPRPSSRCRYLCDGVPGRPGLWGRKTMHQQWMWPCLLPSPAKRGLRAPMQRRQDCGSGHH 1000
C +C V + CL R DC +G
Sbjct: 324 ----RRGCSRICSPV------------RTAGVGICLDQCQGHR----------DCPAGSR 357
Query: 1001 CLRKGCGHVCPP--------------IPSG--SICVTECNVNQDCGAGRRCTXNGCGRVC 1132
C+ GCG VC P +P G C C + C G++C NGCG+ C
Sbjct: 358 CVSNGCGRVCSPTQDRQEQRPGTCPRVPEGMFGTCAERCTGDGSCPPGQKCCSNGCGKSC 417
Score = 149 bits (377), Expect = 3e-36
Identities = 67/154 (43%), Positives = 84/154 (54%), Gaps = 18/154 (11%)
Frame = +2
Query: 101 AVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPVRRRE--ACEHQCREDRDCGSGHQCV 274
A IC +C D+DCGAGR+C S GC RVCSP C +CR DCG+G +C+
Sbjct: 264 APQASICEFQCFRDRDCGAGRQCVSEGCNRVCSPAPEASIGICVQRCRGHWDCGAGERCI 323
Query: 275 RKGCGHVCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRRE--------- 427
R+GC +C+PV VGIC+ +C+ +DC AG RC SNGCGRVCSP Q R+
Sbjct: 324 RRGCSRICSPVRTAGVGICLDQCQGHRDCPAGSRCVSNGCGRVCSPTQDRQEQRPGTCPR 383
Query: 428 -------ACEHQCREDRDCGSGHQCVRKGCGHVC 508
C +C D C G +C GCG C
Sbjct: 384 VPEGMFGTCAERCTGDGSCPPGQKCCSNGCGKSC 417
Score = 86.7 bits (213), Expect = 4e-17
Identities = 35/70 (50%), Positives = 45/70 (64%)
Frame = +2
Query: 413 IQRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCI 592
+Q C QCRED+DC +G +C+ GCGHVC+P Q IC EC D+DCG G+ C+
Sbjct: 26 LQAIGVCVEQCREDQDCVAGEKCISNGCGHVCSPAPQAT--ICSLECSEDRDCGRGKQCV 83
Query: 593 SNGCGRVCFP 622
+GC RVC P
Sbjct: 84 QDGCQRVCSP 93
>ref|XP_593741.4| PREDICTED: hypothetical protein [Bos taurus].
Length = 431
Score = 283 bits (723), Expect = 3e-76
Identities = 146/352 (41%), Positives = 193/352 (54%), Gaps = 9/352 (2%)
Frame = +2
Query: 110 VGICVTECKVDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCREDRDCGSGHQCVRKGCG 289
+G+CV +C+ DQDC AG +C SNGCG VCSP + C +C EDRDCG G QCV+ GC
Sbjct: 29 IGVCVEQCREDQDCVAGEKCISNGCGHVCSPAPQATICSLECSEDRDCGRGKQCVQDGCQ 88
Query: 290 HVCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCREDRDCGS 469
VC+P+ + VGICV +C+ DQDC AG +C SNGCG VCSP+ + C +C EDRDCG
Sbjct: 89 RVCSPL--MSVGICVEQCREDQDCAAGEKCISNGCGHVCSPVPQATICSLECSEDRDCGR 146
Query: 470 GHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRQERGLRA 649
G QCV+ GC VC+P+ + VG+CV +CR DQDC G C+SNGCG VC P Q A
Sbjct: 147 GKQCVQDGCQRVCSPL--MSVGVCVEQCREDQDCAAGEKCVSNGCGHVCSPVPQ-----A 199
Query: 650 PVQRRQGLWEWTSMREEWLWARLRPRPSSRYLCDGV------QRRPGLWGRKTMHQQRVW 811
+ R+ + R + R S + GV + R G K +
Sbjct: 200 TICSRECSEDRDCGRGKQCVQDGCRRVCSPLMSVGVCVEQCREDRDCAAGEKCVSNGCGH 259
Query: 812 ACLLPRPSSRCRYLCDGVPGRPGLWGRKTMHQQWMWPCLLPSPAKRGLRAPMQR-RQDCG 988
C +S C + C R GR+ + + C A G+ R DCG
Sbjct: 260 VCSPAPQASICEFQC--FRDRDCGAGRQCVSEGCNRVCSPAPEASIGICVQRCRGHWDCG 317
Query: 989 SGHHCLRKGCGHVCPPIPSG--SICVTECNVNQDCGAGRRCTXNGCGRVCSP 1138
+G C+R+GC +C P+ + IC+ +C ++DC AG RC NGCGRVCSP
Sbjct: 318 AGERCIRRGCSRICSPVRTAGVGICLDQCQGHRDCPAGSRCVSNGCGRVCSP 369
Score = 257 bits (656), Expect = 2e-68
Identities = 138/360 (38%), Positives = 177/360 (49%), Gaps = 17/360 (4%)
Frame = +2
Query: 104 VDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCREDRDCGSGHQCVRKG 283
+ VGICV +C+ DQDC AG +C SNGCG VCSPV + C +C EDRDCG G QCV+ G
Sbjct: 95 MSVGICVEQCREDQDCAAGEKCISNGCGHVCSPVPQATICSLECSEDRDCGRGKQCVQDG 154
Query: 284 CGHVCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCREDRDC 463
C VC+P+ + VG+CV +C+ DQDC AG +C SNGCG VCSP+ + C +C EDRDC
Sbjct: 155 CQRVCSPL--MSVGVCVEQCREDQDCAAGEKCVSNGCGHVCSPVPQATICSRECSEDRDC 212
Query: 464 GSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGRQERGL 643
G G QCV+ GC VC+P+ + VG+CV +CR D+DC G C+SNGCG VC P Q
Sbjct: 213 GRGKQCVQDGCRRVCSPL--MSVGVCVEQCREDRDCAAGEKCVSNGCGHVCSPAPQASIC 270
Query: 644 RAPVQRRQGLWEWTSMREEWLWARLRPRP-SSRYLCDGVQRRPGLWGRKTMHQQRVWACL 820
R + E P P +S +C VQR G W + C+
Sbjct: 271 EFQCFRDRDCGAGRQCVSEGCNRVCSPAPEASIGIC--VQRCRGHWDCGAGER-----CI 323
Query: 821 LPRPSSRCRYLCDGVPGRPGLWGRKTMHQQWMWPCLLPSPAKRGLRAPMQRRQDCGSGHH 1000
C +C V + CL R DC +G
Sbjct: 324 ----RRGCSRICSPV------------RTAGVGICLDQCQGHR----------DCPAGSR 357
Query: 1001 CLRKGCGHVCPP--------------IPSG--SICVTECNVNQDCGAGRRCTXNGCGRVC 1132
C+ GCG VC P +P G C C + C G++C NGCG+ C
Sbjct: 358 CVSNGCGRVCSPTQDRQEQRPGTCPRVPEGMFGTCAERCTGDGSCPPGQKCCSNGCGKSC 417
Score = 149 bits (377), Expect = 3e-36
Identities = 67/154 (43%), Positives = 84/154 (54%), Gaps = 18/154 (11%)
Frame = +2
Query: 101 AVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPVRRRE--ACEHQCREDRDCGSGHQCV 274
A IC +C D+DCGAGR+C S GC RVCSP C +CR DCG+G +C+
Sbjct: 264 APQASICEFQCFRDRDCGAGRQCVSEGCNRVCSPAPEASIGICVQRCRGHWDCGAGERCI 323
Query: 275 RKGCGHVCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRRE--------- 427
R+GC +C+PV VGIC+ +C+ +DC AG RC SNGCGRVCSP Q R+
Sbjct: 324 RRGCSRICSPVRTAGVGICLDQCQGHRDCPAGSRCVSNGCGRVCSPTQDRQEQRPGTCPR 383
Query: 428 -------ACEHQCREDRDCGSGHQCVRKGCGHVC 508
C +C D C G +C GCG C
Sbjct: 384 VPEGMFGTCAERCTGDGSCPPGQKCCSNGCGKSC 417
Score = 86.7 bits (213), Expect = 4e-17
Identities = 35/70 (50%), Positives = 45/70 (64%)
Frame = +2
Query: 413 IQRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCI 592
+Q C QCRED+DC +G +C+ GCGHVC+P Q IC EC D+DCG G+ C+
Sbjct: 26 LQAIGVCVEQCREDQDCVAGEKCISNGCGHVCSPAPQAT--ICSLECSEDRDCGRGKQCV 83
Query: 593 SNGCGRVCFP 622
+GC RVC P
Sbjct: 84 QDGCQRVCSP 93
>ref|XP_002692529.1| PREDICTED: WAP four-disulfide core domain 3 [Bos taurus].
Length = 197
Score = 72.4 bits (176), Expect = 7e-13
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Frame = +3
Query: 642 CEHQCREDRDCGSGHRCVRNGCGHVC-----------APVHQVGICVTECNVDQDCGGGK 788
CE C D C GH+C GCGH C P VG+C+ C VD++C G+
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 789 QCTSNGCGRVCSP 827
+C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 71.2 bits (173), Expect = 2e-12
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Frame = +2
Query: 221 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECKVDQDCGAGR 373
CE C D C GH+C GCGH C + VG+C+ C VD++C AG
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 374 RCTSNGCGRVCSP 412
+C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 68.2 bits (165), Expect = 1e-11
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Frame = +2
Query: 431 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECRVDQDCGEGR 583
CE C D C GH+C GCGH C + VG+C+ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 584 LCISNGCGRVCFP 622
C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 60.8 bits (146), Expect = 2e-09
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Frame = +3
Query: 744 CVTECNVDQDCGGGKQCTSNGCGRVC---------SPVHQVDVGICVTECQVDQDCGEGR 896
C C+ D C G +C S GCG C + VG+C+ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 897 PCTSNGCGRVCSP 935
C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 55.5 bits (132), Expect = 9e-08
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Frame = +2
Query: 983 CGSGHHCLRKGCGHVC-----------PPIPSGSICVTECNVNQDCGAGRRCTXNGCGRV 1129
C GH C GCGH C P +C+ C V+++C AG +C +GCGR
Sbjct: 120 CPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGEKCCKSGCGRF 179
Query: 1130 CSP 1138
C P
Sbjct: 180 CVP 182
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Frame = +2
Query: 119 CVTECKVDQDCGAGRRCTSNGCGRVC-----------SPVRRREACEHQCREDRDCGSGH 265
C C D C G +C S GCG C P C C D +C +G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 266 QCVRKGCGHVCAP 304
+C + GCG C P
Sbjct: 170 KCCKSGCGRFCVP 182
>ref|XP_001789331.1| PREDICTED: WAP four-disulfide core domain 3 [Bos taurus].
Length = 197
Score = 72.4 bits (176), Expect = 7e-13
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Frame = +3
Query: 642 CEHQCREDRDCGSGHRCVRNGCGHVC-----------APVHQVGICVTECNVDQDCGGGK 788
CE C D C GH+C GCGH C P VG+C+ C VD++C G+
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 789 QCTSNGCGRVCSP 827
+C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 71.2 bits (173), Expect = 2e-12
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Frame = +2
Query: 221 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECKVDQDCGAGR 373
CE C D C GH+C GCGH C + VG+C+ C VD++C AG
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 374 RCTSNGCGRVCSP 412
+C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 68.2 bits (165), Expect = 1e-11
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Frame = +2
Query: 431 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECRVDQDCGEGR 583
CE C D C GH+C GCGH C + VG+C+ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 584 LCISNGCGRVCFP 622
C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 60.8 bits (146), Expect = 2e-09
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Frame = +3
Query: 744 CVTECNVDQDCGGGKQCTSNGCGRVC---------SPVHQVDVGICVTECQVDQDCGEGR 896
C C+ D C G +C S GCG C + VG+C+ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 897 PCTSNGCGRVCSP 935
C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 55.5 bits (132), Expect = 9e-08
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Frame = +2
Query: 983 CGSGHHCLRKGCGHVC-----------PPIPSGSICVTECNVNQDCGAGRRCTXNGCGRV 1129
C GH C GCGH C P +C+ C V+++C AG +C +GCGR
Sbjct: 120 CPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGEKCCKSGCGRF 179
Query: 1130 CSP 1138
C P
Sbjct: 180 CVP 182
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Frame = +2
Query: 119 CVTECKVDQDCGAGRRCTSNGCGRVC-----------SPVRRREACEHQCREDRDCGSGH 265
C C D C G +C S GCG C P C C D +C +G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 266 QCVRKGCGHVCAP 304
+C + GCG C P
Sbjct: 170 KCCKSGCGRFCVP 182
>ref|NP_777128.1| tenascin-X [Bos taurus].
Length = 4135
Score = 46.6 bits (109), Expect(2) = 1e-09
Identities = 53/192 (27%), Positives = 68/192 (35%), Gaps = 21/192 (10%)
Frame = +2
Query: 113 GICVTECKVDQDCGAGRR-CTSNGCGRVCS------PVRRREACEHQCREDRDCGSGHQC 271
G C +C C GR C G CS R C R SG C
Sbjct: 184 GSCPDDCNDQGRCVRGRCVCFPGYTGPSCSWPSCPGDCHGRGRCVQGVCVCRSGFSGDDC 243
Query: 272 VRKGCGHVCAPVHQVDVGICVT-------ECKV---DQDCGAGRRCTSNGCGRVCSPIQR 421
+ C C+ + + G CV +C V +DC RC + C VC+P
Sbjct: 244 SVRSCPRGCSQRGRCEDGRCVCNPGYSGEDCGVRSCPRDCSQRGRCENGRC--VCNPGYT 301
Query: 422 REACE-HQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTEC---RVDQDCGEGRLC 589
+ C C R C +C C VC P + D +C DCGEG C
Sbjct: 302 GDDCGVRSC--PRGCSQKGRCEDGRC--VCDPGYTGD------DCGSRTCPWDCGEGGRC 351
Query: 590 ISNGCGRVCFPG 625
+ C VC+PG
Sbjct: 352 VDGRC--VCWPG 361
Score = 35.0 bits (79), Expect(2) = 1e-09
Identities = 36/136 (26%), Positives = 44/136 (32%), Gaps = 26/136 (19%)
Frame = +3
Query: 642 CEHQCREDRDCGSGHR-CVRNGCGHVCAPVHQVGICVTECNVDQDCGGGK---------- 788
C CR R C G C G C V C ++CN C G+
Sbjct: 372 CPRDCRGPRGCEDGECICDPGYSGDDCG----VRSCPSDCNQRGRCEDGRCVCWPGYSGP 427
Query: 789 QCTSNGCGRVCSPVHQVDVGICV-------TECQVDQ---DCGEGRPCTSNGCGRVCSPA 938
C + C R C + + G+CV +C V DC C S C VC P
Sbjct: 428 DCGARACPRDCRGRGRCENGVCVCHAGYSGEDCGVRSCPGDCRRRGRCESGRC--VCWPG 485
Query: 939 QQ-----KEACEHQCR 971
AC CR
Sbjct: 486 YTGRDCGTRACPGDCR 501
>ref|NP_001039916.2| multiple EGF-like-domains 10 [Bos taurus].
Length = 1136
Score = 40.8 bits (94), Expect(2) = 2e-08
Identities = 52/204 (25%), Positives = 70/204 (34%), Gaps = 39/204 (19%)
Frame = +2
Query: 131 CKVDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCR---------EDRDCGSGHQCVRKG 283
C + C G C + C+P R E CE C+ E DC C
Sbjct: 495 CNLTCQCLNGGACNTLDGTCTCAPGWRGEKCEFPCQDGTYGLNCAERCDCSHADGC-HST 553
Query: 284 CGHV-CAP----VHQVDV---GICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEH 439
GH C P VH V G C + C G C+ + C+P R C+
Sbjct: 554 TGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 613
Query: 440 QCREDRDCGSGHQCVR--KGCGHVCAPVHQVDVGIC-----VTECRVDQDCGEGRL---- 586
C GH+C + C H P H + G+C T ++ C GR
Sbjct: 614 ICSPG---FYGHRCSQTCPQCVHSSGPCHHI-TGLCDCLPGFTGALCNEVCPSGRFGKNC 669
Query: 587 -----CISNG-CGRV-----CFPG 625
C +NG C + C+PG
Sbjct: 670 AGICTCTNNGTCNPIDRSCQCYPG 693
Score = 36.2 bits (82), Expect(2) = 2e-08
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 5/107 (4%)
Frame = +3
Query: 663 DRDCGSGHRCVRNGCGHVCAPVHQVGICVTECNVDQDC-----GGGKQCTSNGCGRVCSP 827
DR C + + C C P H C+ CN G +CT G C+
Sbjct: 685 DRSCQCYPGWIGSDCSQPCPPAHWGPNCIHTCNCHNGAFCSAYDGECKCTPGWTGLYCT- 743
Query: 828 VHQVDVGICVTECQVDQDCGEGRPCTSNGCGRVCSPAQQKEACEHQC 968
+ +G +C + C G C C + CE +C
Sbjct: 744 -QRCPLGFYGKDCALVCQCQNGADCDHISGQCTCRTGFMGKHCEQKC 789
>ref|XP_002689022.1| PREDICTED: multiple EGF-like-domains 10 [Bos taurus].
Length = 1136
Score = 40.8 bits (94), Expect(2) = 2e-08
Identities = 52/204 (25%), Positives = 70/204 (34%), Gaps = 39/204 (19%)
Frame = +2
Query: 131 CKVDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCR---------EDRDCGSGHQCVRKG 283
C + C G C + C+P R E CE C+ E DC C
Sbjct: 495 CNLTCQCLNGGACNTLDGTCTCAPGWRGEKCEFPCQDGTYGLNCAERCDCSHADGC-HST 553
Query: 284 CGHV-CAP----VHQVDV---GICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEH 439
GH C P VH V G C + C G C+ + C+P R C+
Sbjct: 554 TGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 613
Query: 440 QCREDRDCGSGHQCVR--KGCGHVCAPVHQVDVGIC-----VTECRVDQDCGEGRL---- 586
C GH+C + C H P H + G+C T ++ C GR
Sbjct: 614 ICSPG---FYGHRCSQTCPQCVHSSGPCHHI-TGLCDCLPGFTGALCNEVCPSGRFGKNC 669
Query: 587 -----CISNG-CGRV-----CFPG 625
C +NG C + C+PG
Sbjct: 670 AGICTCTNNGTCNPIDRSCQCYPG 693
Score = 36.2 bits (82), Expect(2) = 2e-08
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 5/107 (4%)
Frame = +3
Query: 663 DRDCGSGHRCVRNGCGHVCAPVHQVGICVTECNVDQDC-----GGGKQCTSNGCGRVCSP 827
DR C + + C C P H C+ CN G +CT G C+
Sbjct: 685 DRSCQCYPGWIGSDCSQPCPPAHWGPNCIHTCNCHNGAFCSAYDGECKCTPGWTGLYCT- 743
Query: 828 VHQVDVGICVTECQVDQDCGEGRPCTSNGCGRVCSPAQQKEACEHQC 968
+ +G +C + C G C C + CE +C
Sbjct: 744 -QRCPLGFYGKDCALVCQCQNGADCDHISGQCTCRTGFMGKHCEQKC 789
>ref|XP_001788534.1| PREDICTED: multiple EGF-like-domains 10 [Bos taurus].
Length = 1136
Score = 40.8 bits (94), Expect(2) = 2e-08
Identities = 52/204 (25%), Positives = 70/204 (34%), Gaps = 39/204 (19%)
Frame = +2
Query: 131 CKVDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCR---------EDRDCGSGHQCVRKG 283
C + C G C + C+P R E CE C+ E DC C
Sbjct: 495 CNLTCQCLNGGACNTLDGTCTCAPGWRGEKCEFPCQDGTYGLNCAERCDCSHADGC-HST 553
Query: 284 CGHV-CAP----VHQVDV---GICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEH 439
GH C P VH V G C + C G C+ + C+P R C+
Sbjct: 554 TGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 613
Query: 440 QCREDRDCGSGHQCVR--KGCGHVCAPVHQVDVGIC-----VTECRVDQDCGEGRL---- 586
C GH+C + C H P H + G+C T ++ C GR
Sbjct: 614 ICSPG---FYGHRCSQTCPQCVHSSGPCHHI-TGLCDCLPGFTGALCNEVCPSGRFGKNC 669
Query: 587 -----CISNG-CGRV-----CFPG 625
C +NG C + C+PG
Sbjct: 670 AGICTCTNNGTCNPIDRSCQCYPG 693
Score = 36.2 bits (82), Expect(2) = 2e-08
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 5/107 (4%)
Frame = +3
Query: 663 DRDCGSGHRCVRNGCGHVCAPVHQVGICVTECNVDQDC-----GGGKQCTSNGCGRVCSP 827
DR C + + C C P H C+ CN G +CT G C+
Sbjct: 685 DRSCQCYPGWIGSDCSQPCPPAHWGPNCIHTCNCHNGAFCSAYDGECKCTPGWTGLYCT- 743
Query: 828 VHQVDVGICVTECQVDQDCGEGRPCTSNGCGRVCSPAQQKEACEHQC 968
+ +G +C + C G C C + CE +C
Sbjct: 744 -QRCPLGFYGKDCALVCQCQNGADCDHISGQCTCRTGFMGKHCEQKC 789
>ref|NP_001069958.1| WAP four-disulfide core domain protein 2 [Bos taurus].
Length = 123
Score = 54.7 bits (130), Expect = 2e-07
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
Frame = +3
Query: 744 CVTECNVDQDCGGGKQCTSNGCGRVCSPVHQ-------VDV-----GICVTECQVDQDCG 887
C C +D+DC +C GC VC + VD+ G+C +CQVD C
Sbjct: 44 CTKACVLDEDCDDNLKCCQAGCATVCQMPNDKPGSCPNVDIAFPQLGLCRDQCQVDSQCP 103
Query: 888 EGRPCTSNGCGRV 926
+ C NGCGRV
Sbjct: 104 DALKCCVNGCGRV 116
Score = 52.0 bits (123), Expect = 1e-06
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Frame = +3
Query: 603 VAVSASQGDKREG---CEHQCREDRDCGSGHRCVRNGCGHVCAPVH-------------- 731
+AV + + EG C C D DC +C + GC VC +
Sbjct: 28 IAVKPGECPELEGDANCTKACVLDEDCDDNLKCCQAGCATVCQMPNDKPGSCPNVDIAFP 87
Query: 732 QVGICVTECNVDQDCGGGKQCTSNGCGRV 818
Q+G+C +C VD C +C NGCGRV
Sbjct: 88 QLGLCRDQCQVDSQCPDALKCCVNGCGRV 116
Score = 51.6 bits (122), Expect = 1e-06
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Frame = +2
Query: 404 CSPIQRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQ-------VDV-----GICVT 547
C ++ C C D DC +C + GC VC + VD+ G+C
Sbjct: 35 CPELEGDANCTKACVLDEDCDDNLKCCQAGCATVCQMPNDKPGSCPNVDIAFPQLGLCRD 94
Query: 548 ECRVDQDCGEGRLCISNGCGRV 613
+C+VD C + C NGCGRV
Sbjct: 95 QCQVDSQCPDALKCCVNGCGRV 116
Score = 50.4 bits (119), Expect = 3e-06
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Frame = +2
Query: 194 CSPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQ-------VDV-----GICVT 337
C + C C D DC +C + GC VC + VD+ G+C
Sbjct: 35 CPELEGDANCTKACVLDEDCDDNLKCCQAGCATVCQMPNDKPGSCPNVDIAFPQLGLCRD 94
Query: 338 ECKVDQDCGAGRRCTSNGCGRV 403
+C+VD C +C NGCGRV
Sbjct: 95 QCQVDSQCPDALKCCVNGCGRV 116
>ref|XP_002685354.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like
[Bos taurus].
Length = 4680
Score = 43.5 bits (101), Expect(2) = 3e-07
Identities = 41/145 (28%), Positives = 55/145 (37%), Gaps = 25/145 (17%)
Frame = +3
Query: 630 KREGCEH---QCREDRDCGSG-----HRCVRNGC---------GHVCAPVHQVGICVTEC 758
K C H +C D DCG G H C+ C + C H+V C
Sbjct: 3880 KNHVCIHSSWKCDGDNDCGDGSDEELHLCLNVACDSPYRFRCDNNRCIYRHEV------C 3933
Query: 759 NVDQDCGGG----KQCTSNGCGRVCSP-VHQVDVGICVTE---CQVDQDCGEGRPCTSNG 914
N + DCG G K+ R C+P + G C+ + C DCG+ T
Sbjct: 3934 NQEDDCGDGSDEKKELCVEPTPRPCTPDEFKCSNGRCIPQHRVCDHVNDCGDNFDETGCN 3993
Query: 915 CGRVCSPAQQKEACEHQCREDRTVG 989
G+ S A+ CEH C + R G
Sbjct: 3994 TGKDRSCAE--NLCEHNCTQLREGG 4016
Score = 29.6 bits (65), Expect(2) = 3e-07
Identities = 47/187 (25%), Positives = 64/187 (34%), Gaps = 37/187 (19%)
Frame = +2
Query: 122 VTECKVDQDC------------GAGRRC---TSNGCGRVCSPVRRREACE--HQCR---E 241
+ +C VD DC G RC T C + + C CR +
Sbjct: 3681 IWKCDVDNDCGDYSDEPLQECLGPSYRCDNYTEFSCKTNYRCIPKWAVCNGVDDCRDNSD 3740
Query: 242 DRDCGSGHQCVRKG----CGHVCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCS 409
++DC S C G H C P+ C DCG R N R C+
Sbjct: 3741 EQDCES-MTCKPSGEFRCTNHRCIPLR--------WRCDGQNDCG-DRSDEENCAPRKCT 3790
Query: 410 PIQRREACEHQ--------CREDRDCGSGHQCVRKGCGHV-CAPVH-QVDVGICVTE--- 550
+ R C+ Q C + DCG + C + C P + Q D G C++E
Sbjct: 3791 ESEFR--CDDQSCIPSRWVCDQTNDCGDNSD--ERDCEMMTCRPGYFQCDSGHCISEHMK 3846
Query: 551 CRVDQDC 571
C DC
Sbjct: 3847 CNGVADC 3853
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,438,175
Number of extensions: 2108556
Number of successful extensions: 9808
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 9274
Number of HSP's successfully gapped: 86
Length of query: 380
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,240,222
Effective search space: 3930301272
Effective search space used: 3930301272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012522
(1140 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928820.2| PREDICTED: WAP four-disulfide core domain pr... 65 7e-11
Alignment gi|NP_001116676.1| tenascin-X [Sus scrofa]. 46 4e-09
Alignment gi|XP_003354310.1| PREDICTED: multiple epidermal growth factor-... 40 2e-08
Alignment gi|NP_999112.1| WAP four-disulfide core domain protein 2 precur... 57 2e-08
Alignment gi|XP_003356960.1| PREDICTED: NF-X1-type zinc finger protein NF... 49 5e-06
Alignment gi|XP_003129006.2| PREDICTED: NF-X1-type zinc finger protein NF... 49 5e-06
>ref|XP_001928820.2| PREDICTED: WAP four-disulfide core domain protein 3 isoform 1 [Sus
scrofa].
Length = 113
Score = 65.1 bits (157), Expect = 7e-11
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Frame = +2
Query: 221 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECKVDQDCGAGR 373
CE C D C GH+C GCGH C + VG C+ C VD++C AG
Sbjct: 15 CEELCDGDASCPQGHKCCSTGCGHACRGDIKGGRGGDCPNILVGPCIVSCWVDENCQAGE 74
Query: 374 RCTSNGCGRVC 406
+C +GC R C
Sbjct: 75 KCCKSGCSRFC 85
Score = 64.7 bits (156), Expect = 9e-11
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Frame = +3
Query: 642 CEHQCREDRDCGSGHRCVRNGCGHVC-----------APVHQVGICVTECNVDQDCGGGK 788
CE C D C GH+C GCGH C P VG C+ C VD++C G+
Sbjct: 15 CEELCDGDASCPQGHKCCSTGCGHACRGDIKGGRGGDCPNILVGPCIVSCWVDENCQAGE 74
Query: 789 QCTSNGCGRVC 821
+C +GC R C
Sbjct: 75 KCCKSGCSRFC 85
Score = 61.6 bits (148), Expect = 8e-10
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Frame = +2
Query: 431 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECRVDQDCGEGR 583
CE C D C GH+C GCGH C + VG C+ C VD++C G
Sbjct: 15 CEELCDGDASCPQGHKCCSTGCGHACRGDIKGGRGGDCPNILVGPCIVSCWVDENCQAGE 74
Query: 584 LCISNGCGRVC 616
C +GC R C
Sbjct: 75 KCCKSGCSRFC 85
Score = 54.7 bits (130), Expect = 9e-08
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Frame = +3
Query: 744 CVTECNVDQDCGGGKQCTSNGCGRVC---------SPVHQVDVGICVTECQVDQDCGEGR 896
C C+ D C G +C S GCG C + VG C+ C VD++C G
Sbjct: 15 CEELCDGDASCPQGHKCCSTGCGHACRGDIKGGRGGDCPNILVGPCIVSCWVDENCQAGE 74
Query: 897 PCTSNGCGRVC 929
C +GC R C
Sbjct: 75 KCCKSGCSRFC 85
Score = 50.1 bits (118), Expect = 2e-06
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Frame = +2
Query: 983 CGSGHHCLRKGCGHVC------------PPIPSGSICVTECNVNQDCGAGRRCTXNGCGR 1126
C GH C GCGH C P I G C+ C V+++C AG +C +GC R
Sbjct: 25 CPQGHKCCSTGCGHACRGDIKGGRGGDCPNILVGP-CIVSCWVDENCQAGEKCCKSGCSR 83
Query: 1127 VC 1132
C
Sbjct: 84 FC 85
>ref|NP_001116676.1| tenascin-X [Sus scrofa].
Length = 4137
Score = 45.8 bits (107), Expect(2) = 4e-09
Identities = 54/198 (27%), Positives = 67/198 (33%), Gaps = 25/198 (12%)
Frame = +2
Query: 107 DVGICVTECKVDQDCGAGR-RCTSNGCGRVCSPVRRREACEHQCREDRDCG--------- 256
D C +C C GR C G CS +C C C
Sbjct: 176 DARSCPDDCNDQGRCIRGRCLCFPGYTGPSCS----WPSCPGDCHGRGRCVKGVCVCRAG 231
Query: 257 -SGHQCVRKGCGHVCAPVHQVDVGICVTE-------CKV---DQDCGAGRRCTSNGCGRV 403
SG C + C C+ + + G CV + C V +DC RC C V
Sbjct: 232 FSGDDCSLRSCPRGCSQRGRCEDGRCVCDSGYTGEDCGVRSCPRDCSQRGRCQDGRC--V 289
Query: 404 CSPIQRREACE-HQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTEC---RVDQDC 571
C+P E C C R C +C C VC P G +C DC
Sbjct: 290 CNPGYTGEDCGVRSC--PRGCSQKGRCEDGRC--VCDP------GYTGEDCGSRSCPWDC 339
Query: 572 GEGRLCISNGCGRVCFPG 625
GEG C+ C VC+PG
Sbjct: 340 GEGGRCVDGRC--VCWPG 355
Score = 33.1 bits (74), Expect(2) = 4e-09
Identities = 36/136 (26%), Positives = 45/136 (33%), Gaps = 26/136 (19%)
Frame = +3
Query: 642 CEHQCREDRDCGSGHRCVRNG--CGHVCAPVHQVGICVTECNVDQDCGGGK--------- 788
C CR C G C+ N G C V C +CN C G+
Sbjct: 366 CPRDCRGRGRCEDGE-CICNAGYSGDDCG----VRSCPGDCNQRGRCEDGRCVCWPGYSG 420
Query: 789 -QCTSNGCGRVCSPVHQVDVGICVTECQVD-QDCGEGRPCTSNGCGR--------VCSPA 938
C + C R C + + G+CV +DCG R C + GR VC P
Sbjct: 421 PDCGARACPRDCRGRGRCENGVCVCNAGYSGEDCGV-RSCPGDCLGRGRCENGRCVCWPG 479
Query: 939 QQ-----KEACEHQCR 971
AC CR
Sbjct: 480 YTGRDCGTRACPGDCR 495
>ref|XP_003354310.1| PREDICTED: multiple epidermal growth factor-like domains protein 10
[Sus scrofa].
Length = 1152
Score = 38.9 bits (89), Expect(2) = 2e-08
Identities = 46/173 (26%), Positives = 56/173 (32%), Gaps = 13/173 (7%)
Frame = +2
Query: 137 VDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCREDRDCGSGHQC--VRKGC-------G 289
V +C T C +C P + CE +C C +G C V C G
Sbjct: 143 VTGECRCPPGYTGAFCEDLCPPGKHGPQCEQRC----PCQNGGVCHHVTGECPCPPGWLG 198
Query: 290 HVCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCREDR---D 460
VC G C + C G C + CSP E C+ +C
Sbjct: 199 TVCG--QPCPEGRFGKNCSQECQCHNGGTCDAATGQCHCSPGYTGERCQDECPVGTYGVG 256
Query: 461 CGSGHQCVRKG-CGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVC 616
C QCV G C HV G C+ E D E RLC G C
Sbjct: 257 CAETCQCVNGGKCYHVS--------GSCLCEAGFAGDRCEARLCPEGLYGIKC 301
Score = 37.7 bits (86), Expect(2) = 2e-08
Identities = 42/148 (28%), Positives = 56/148 (37%), Gaps = 21/148 (14%)
Frame = +3
Query: 612 SASQGDKREGCEH--QCREDRDCGSGHRCVRNGCGHVCAPVHQVGICVTECNVDQDCGGG 785
+ S G E C+ C+ DC S V C CAP + C T C++ G
Sbjct: 336 TCSPGFYGEACQQICSCQNGADCDS----VTGKC--TCAPGFKGIDCSTPCSLGTY---G 386
Query: 786 KQCTSN-GCGR--VCSPV----------HQVDVGICVTE------CQVDQDCGEGRPCTS 908
C+S GC +CSPV H VD I C + C G C +
Sbjct: 387 VNCSSLCGCKNDAMCSPVDGSCTCKAGWHGVDCSISCPSGTWGFGCNLTCQCLNGGACNT 446
Query: 909 NGCGRVCSPAQQKEACEHQCREDRTVGV 992
C+P + E CE C +D T G+
Sbjct: 447 LDGTCTCAPGWRGEKCEFPC-QDGTYGL 473
Score = 40.4 bits (93), Expect(2) = 3e-08
Identities = 52/204 (25%), Positives = 70/204 (34%), Gaps = 39/204 (19%)
Frame = +2
Query: 131 CKVDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCR---------EDRDCGSGHQCVRKG 283
C + C G C + C+P R E CE C+ E DC C
Sbjct: 432 CNLTCQCLNGGACNTLDGTCTCAPGWRGEKCEFPCQDGTYGLHCAERCDCSHADGC-HPT 490
Query: 284 CGHV-CAP----VHQVDV---GICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEH 439
GH C P VH V G C + C G C+ + C+P R C+
Sbjct: 491 TGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 550
Query: 440 QCREDRDCGSGHQCVR--KGCGHVCAPVHQVDVGIC-----VTECRVDQDCGEGRL---- 586
C GH+C + C H P H + G+C T ++ C GR
Sbjct: 551 ICSPG---FYGHRCSQTCPQCVHSSGPCHHI-TGLCDCLPGFTGALCNEVCPSGRFGKNC 606
Query: 587 -----CISNG-CGRV-----CFPG 625
C +NG C + C+PG
Sbjct: 607 AGICTCTNNGTCNPIDRSCQCYPG 630
Score = 35.4 bits (80), Expect(2) = 3e-08
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 5/107 (4%)
Frame = +3
Query: 663 DRDCGSGHRCVRNGCGHVCAPVHQVGICVTECNVDQDC-----GGGKQCTSNGCGRVCSP 827
DR C + + C C P H C+ CN G +CT G C+
Sbjct: 622 DRSCQCYPGWIGSDCSQPCPPAHWGPNCIHTCNCHNGAFCSAYDGECKCTPGWTGLYCT- 680
Query: 828 VHQVDVGICVTECQVDQDCGEGRPCTSNGCGRVCSPAQQKEACEHQC 968
+ +G +C + C G C C + CE +C
Sbjct: 681 -QRCPLGFYGKDCALICRCQNGADCDHISGQCTCRTGFMGKHCEQKC 726
>ref|NP_999112.1| WAP four-disulfide core domain protein 2 precursor [Sus scrofa].
Length = 123
Score = 57.0 bits (136), Expect = 2e-08
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Frame = +2
Query: 191 VCSPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVH-------QVDV-----GICV 334
VC V C +C D DC +C + GC +C + QVD+ G+C+
Sbjct: 34 VCPAVEVDMNCTQECLSDADCADNLKCCKAGCVTICQMPNEKEGSCPQVDIAFPQLGLCL 93
Query: 335 TECKVDQDCGAGRRCTSNGCGRV 403
+C+VD C +C NGCG+V
Sbjct: 94 DQCQVDSQCPGQLKCCRNGCGKV 116
Score = 55.5 bits (132), Expect = 6e-08
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Frame = +3
Query: 714 VCAPVHQVGICVTECNVDQDCGGGKQCTSNGCGRVCSPVH-------QVDV-----GICV 857
VC V C EC D DC +C GC +C + QVD+ G+C+
Sbjct: 34 VCPAVEVDMNCTQECLSDADCADNLKCCKAGCVTICQMPNEKEGSCPQVDIAFPQLGLCL 93
Query: 858 TECQVDQDCGEGRPCTSNGCGRV 926
+CQVD C C NGCG+V
Sbjct: 94 DQCQVDSQCPGQLKCCRNGCGKV 116
Score = 55.1 bits (131), Expect = 7e-08
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Frame = +2
Query: 401 VCSPIQRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVH-------QVDV-----GICV 544
VC ++ C +C D DC +C + GC +C + QVD+ G+C+
Sbjct: 34 VCPAVEVDMNCTQECLSDADCADNLKCCKAGCVTICQMPNEKEGSCPQVDIAFPQLGLCL 93
Query: 545 TECRVDQDCGEGRLCISNGCGRV 613
+C+VD C C NGCG+V
Sbjct: 94 DQCQVDSQCPGQLKCCRNGCGKV 116
Score = 55.1 bits (131), Expect = 7e-08
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Frame = +3
Query: 642 CEHQCREDRDCGSGHRCVRNGCGHVCAPVH--------------QVGICVTECNVDQDCG 779
C +C D DC +C + GC +C + Q+G+C+ +C VD C
Sbjct: 44 CTQECLSDADCADNLKCCKAGCVTICQMPNEKEGSCPQVDIAFPQLGLCLDQCQVDSQCP 103
Query: 780 GGKQCTSNGCGRV 818
G +C NGCG+V
Sbjct: 104 GQLKCCRNGCGKV 116
>ref|XP_003356960.1| PREDICTED: NF-X1-type zinc finger protein NFXL1-like [Sus scrofa].
Length = 476
Score = 48.9 bits (115), Expect = 5e-06
Identities = 54/191 (28%), Positives = 73/191 (38%), Gaps = 17/191 (8%)
Frame = +2
Query: 140 DQDCGAGRRCTSNGCGRVC-------SPVRRREACEHQ-------CRED-RDCGSGHQCV 274
DQ CG C ++ C +VC P + C Q C ED CG V
Sbjct: 315 DQVCGKTLSCRNHTCEQVCHVGACGDCPRSGKRFCPCQKSKFSLPCTEDVPTCGDSCDKV 374
Query: 275 RKGCG-HVCAPVHQVDVGICVT-ECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCR 448
+ CG H C+ + G C T +V++ C G+ P + CE +C
Sbjct: 375 LE-CGIHRCS--QRCHRGPCETCRQEVEKHCRCGKHTKR-------MPCHKPYLCETKCV 424
Query: 449 EDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPGR 628
+ RDC HQC RK C C P DQ+CG C ++ C VC
Sbjct: 425 KMRDC-QKHQCRRKCCPGNCPP--------------CDQNCGRTLGCRNHKCPSVC---- 465
Query: 629 QERGLRAPVQR 661
R + PVQ+
Sbjct: 466 -HRVIGIPVQK 475
>ref|XP_003129006.2| PREDICTED: NF-X1-type zinc finger protein NFXL1 [Sus scrofa].
Length = 911
Score = 48.9 bits (115), Expect = 5e-06
Identities = 51/179 (28%), Positives = 67/179 (37%), Gaps = 17/179 (9%)
Frame = +2
Query: 140 DQDCGAGRRCTSNGCGRVCS-------PVRRREACEHQ-------CRED-RDCGSGHQCV 274
DQ CG C ++ C +VC P + C Q C ED CG V
Sbjct: 362 DQVCGKTLSCRNHTCEQVCHVGACGDCPRSGKRFCPCQKSKFSLPCTEDVPTCGDSCDKV 421
Query: 275 RKGCG-HVCAP-VHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCR 448
+ CG H C+ H+ C E V++ C G+ C + CE +C
Sbjct: 422 LE-CGIHRCSQRCHRGPCETCRQE--VEKHCRCGKHTKRMPC-------HKPYLCETKCV 471
Query: 449 EDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPG 625
+ RDC HQC RK C C P DQ+CG C ++ C VC G
Sbjct: 472 KMRDCQK-HQCRRKCCPGNCPPC--------------DQNCGRTLGCRNHKCPSVCHRG 515
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,349,883
Number of extensions: 1347335
Number of successful extensions: 5935
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5629
Number of HSP's successfully gapped: 19
Length of query: 380
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 279
Effective length of database: 8,829,335
Effective search space: 2463384465
Effective search space used: 2463384465
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012522
(1140 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082237.1| WAP four-disulfide core domain 3 [Mus musculus]. 73 5e-13
Alignment gi|NP_001001979.1| multiple epidermal growth factor-like domain... 39 6e-08
Alignment gi|NP_080599.1| WAP four-disulfide core domain protein 2 precur... 56 6e-08
Alignment gi|NP_001074019.1| WAP four-disulfide core domain protein 8 [Mu... 56 6e-08
Alignment gi|NP_001156449.1| multiple epidermal growth factor-like domain... 37 4e-07
Alignment gi|NP_663344.2| WAP four-disulfide core domain 5 precursor [Mus... 52 9e-07
Alignment gi|NP_001028368.2| NFX1-type zinc finger-containing protein 1 [... 51 2e-06
Alignment gi|NP_598682.2| nuclear transcription factor, X-box binding-lik... 49 6e-06
>ref|NP_082237.1| WAP four-disulfide core domain 3 [Mus musculus].
Length = 130
Score = 72.8 bits (177), Expect = 5e-13
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Frame = +2
Query: 431 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECRVDQDCGEGR 583
C+ C D C GH+C GCGH C ++ VG+C+ +C +D++C G
Sbjct: 32 CQELCTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVGLCIVQCMMDENCQSGE 91
Query: 584 LCISNGCGRVCFPGRQ 631
C +GCGR C PG Q
Sbjct: 92 RCCKSGCGRFCIPGLQ 107
Score = 71.6 bits (174), Expect = 1e-12
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Frame = +2
Query: 221 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECKVDQDCGAGR 373
C+ C D C GH+C GCGH C ++ VG+C+ +C +D++C +G
Sbjct: 32 CQELCTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVGLCIVQCMMDENCQSGE 91
Query: 374 RCTSNGCGRVCSP 412
RC +GCGR C P
Sbjct: 92 RCCKSGCGRFCIP 104
Score = 70.9 bits (172), Expect = 2e-12
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Frame = +3
Query: 642 CEHQCREDRDCGSGHRCVRNGCGHVC-----------APVHQVGICVTECNVDQDCGGGK 788
C+ C D C GH+C GCGH C P VG+C+ +C +D++C G+
Sbjct: 32 CQELCTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVGLCIVQCMMDENCQSGE 91
Query: 789 QCTSNGCGRVCSP 827
+C +GCGR C P
Sbjct: 92 RCCKSGCGRFCIP 104
Score = 63.5 bits (153), Expect = 3e-10
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Frame = +3
Query: 744 CVTECNVDQDCGGGKQCTSNGCGRVC---------SPVHQVDVGICVTECQVDQDCGEGR 896
C C D+ C G +C S GCG C ++ VG+C+ +C +D++C G
Sbjct: 32 CQELCTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVGLCIVQCMMDENCQSGE 91
Query: 897 PCTSNGCGRVCSPAQQ 944
C +GCGR C P Q
Sbjct: 92 RCCKSGCGRFCIPGLQ 107
Score = 56.6 bits (135), Expect = 3e-08
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Frame = +2
Query: 977 QDCGSGHHCLRKGCGHVC------------PPIPSGSICVTECNVNQDCGAGRRCTXNGC 1120
+ C GH C GCGH C P I G +C+ +C ++++C +G RC +GC
Sbjct: 40 ESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVG-LCIVQCMMDENCQSGERCCKSGC 98
Query: 1121 GRVCSP 1138
GR C P
Sbjct: 99 GRFCIP 104
Score = 53.1 bits (126), Expect = 4e-07
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Frame = +2
Query: 119 CVTECKVDQDCGAGRRCTSNGCGRVC-----------SPVRRREACEHQCREDRDCGSGH 265
C C D+ C G +C S GCG C P C QC D +C SG
Sbjct: 32 CQELCTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVGLCIVQCMMDENCQSGE 91
Query: 266 QCVRKGCGHVCAP 304
+C + GCG C P
Sbjct: 92 RCCKSGCGRFCIP 104
>ref|NP_001001979.1| multiple epidermal growth factor-like domains protein 10 precursor
[Mus musculus].
Length = 1147
Score = 38.1 bits (87), Expect(2) = 6e-08
Identities = 43/170 (25%), Positives = 55/170 (32%), Gaps = 13/170 (7%)
Frame = +2
Query: 146 DCGAGRRCTSNGCGRVCSPVRRREACEHQCREDRDCGSGHQC--VRKGC-------GHVC 298
+C T C +C P + CE +C C +G C V C G VC
Sbjct: 209 ECRCSPGYTGAFCEDLCPPGKHGPHCEQRC----PCQNGGVCHHVTGECSCPSGWMGTVC 264
Query: 299 APVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCREDR---DCGS 469
G C + C G C + CSP E C+ +C C
Sbjct: 265 G--QPCPEGRFGKNCSQECQCHNGGTCDAATGQCHCSPGYTGERCQDECPVGSYGVRCAE 322
Query: 470 GHQCVRKG-CGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVC 616
+CV G C HV G C+ E + E RLC G C
Sbjct: 323 ACRCVNGGKCYHVS--------GTCLCEAGFSGELCEARLCPEGLYGIKC 364
Score = 37.4 bits (85), Expect(2) = 6e-08
Identities = 42/149 (28%), Positives = 56/149 (37%), Gaps = 21/149 (14%)
Frame = +3
Query: 612 SASQGDKREGCEH--QCREDRDCGSGHRCVRNGCGHVCAPVHQVGICVTECNVDQDCGGG 785
+ S G E C+ C+ DC S V C CAP + C T C + + G
Sbjct: 399 TCSPGFYGEACQQICSCQNGADCDS----VTGRCA--CAPGFKGTDCSTPCPLGRY---G 449
Query: 786 KQCTSN-GCGR--VCSPV----------HQVDVGICVTE------CQVDQDCGEGRPCTS 908
C+S GC VCSPV H VD I C + C G C +
Sbjct: 450 INCSSRCGCKNDAVCSPVDGSCICKAGWHGVDCSIRCPSGTWGFGCNLTCQCLNGGACNT 509
Query: 909 NGCGRVCSPAQQKEACEHQCREDRTVGVD 995
C+P + CE C +D T G++
Sbjct: 510 LDGTCTCAPGWRGAKCEFPC-QDGTYGLN 537
Score = 38.5 bits (88), Expect(2) = 1e-07
Identities = 51/203 (25%), Positives = 71/203 (34%), Gaps = 38/203 (18%)
Frame = +2
Query: 131 CKVDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCREDR---DCGSGHQCVR-KGC---- 286
C + C G C + C+P R CE C++ +C C GC
Sbjct: 495 CNLTCQCLNGGACNTLDGTCTCAPGWRGAKCEFPCQDGTYGLNCAERCDCSHADGCHPTT 554
Query: 287 GHV-CAP----VHQVDV---GICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQ 442
GH C P VH V G C + C G C+ + C+P R C+
Sbjct: 555 GHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRI 614
Query: 443 CREDRDCGSGHQCVR--KGCGHVCAPVHQVDVGIC-----VTECRVDQDCGEGRL----- 586
C GH+C + C H P H + G+C T ++ C GR
Sbjct: 615 CSPG---FYGHRCSQTCPQCVHSSGPCHHI-TGLCDCLPGFTGALCNEVCPSGRFGKNCA 670
Query: 587 ----CISNG-CGRV-----CFPG 625
C +NG C + C+PG
Sbjct: 671 GVCTCTNNGTCNPIDRSCQCYPG 693
Score = 35.8 bits (81), Expect(2) = 1e-07
Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Frame = +3
Query: 663 DRDCGSGHRCVRNGCGHVCAPVHQVGICVTECNVDQDC-----GGGKQCTSNGCGRVCSP 827
DR C + + C C P H C+ CN G +CT G C+
Sbjct: 685 DRSCQCYPGWIGSDCSQPCPPAHWGPNCIHTCNCHNGAFCSAYDGECKCTPGWTGLYCT- 743
Query: 828 VHQVDVGICVTECQVDQDCGEGRPCTSNGCGRVCSPAQQKEACEHQC 968
+ +G +C + C G C C CE +C
Sbjct: 744 -QRCPLGFYGKDCALICQCQNGADCDHISGQCTCRTGFMGRHCEQKC 789
>ref|NP_080599.1| WAP four-disulfide core domain protein 2 precursor [Mus musculus].
Length = 174
Score = 55.8 bits (133), Expect = 6e-08
Identities = 31/123 (25%), Positives = 44/123 (35%), Gaps = 28/123 (22%)
Frame = +2
Query: 119 CVTECKVDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCREDRDCGSGHQCVRKGCGH-- 292
CV EC +D+DC R+C GC VCS E + + +G G H
Sbjct: 45 CVLECTLDKDCADNRKCCQAGCSSVCSKPNGPSEGELSGTDTKLSETGTTTQSAGLDHTT 104
Query: 293 --------------------------VCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGC 394
C V +G+C +C+VD C +C NGC
Sbjct: 105 KPPGGQVSTKPPAVTREGLGVREKQGTCPSVDIPKLGLCEDQCQVDSQCSGNMKCCRNGC 164
Query: 395 GRV 403
G++
Sbjct: 165 GKM 167
Score = 40.8 bits (94), Expect(2) = 8e-08
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 675 GSGHRCVRNGCGHVCAPVHQVGICVTECNVDQDCGGGKQCTSNGCGRV 818
G G R + C V P ++G+C +C VD C G +C NGCG++
Sbjct: 122 GLGVREKQGTCPSVDIP--KLGLCEDQCQVDSQCSGNMKCCRNGCGKM 167
Score = 34.3 bits (77), Expect(2) = 8e-08
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Frame = +2
Query: 404 CSPIQRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVG-ICVTECRVDQDCGEG 580
C ++ C +C D+DC +C + GC VC+ + G + T+ ++ + G
Sbjct: 36 CPQLEPITDCVLECTLDKDCADNRKCCQAGCSSVCSKPNGPSEGELSGTDTKLSE---TG 92
Query: 581 RLCISNGCGRVCFPGRQERGLRAPVQRRQGL 673
S G P + + P R+GL
Sbjct: 93 TTTQSAGLDHTTKPPGGQVSTKPPAVTREGL 123
Score = 53.1 bits (126), Expect = 4e-07
Identities = 31/123 (25%), Positives = 43/123 (34%), Gaps = 28/123 (22%)
Frame = +2
Query: 329 CVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCREDRDCGSGHQCVRKGCGHV- 505
CV EC +D+DC R+C GC VCS E + + +G G H
Sbjct: 45 CVLECTLDKDCADNRKCCQAGCSSVCSKPNGPSEGELSGTDTKLSETGTTTQSAGLDHTT 104
Query: 506 ---------------------------CAPVHQVDVGICVTECRVDQDCGEGRLCISNGC 604
C V +G+C +C+VD C C NGC
Sbjct: 105 KPPGGQVSTKPPAVTREGLGVREKQGTCPSVDIPKLGLCEDQCQVDSQCSGNMKCCRNGC 164
Query: 605 GRV 613
G++
Sbjct: 165 GKM 167
>ref|NP_001074019.1| WAP four-disulfide core domain protein 8 [Mus musculus].
Length = 273
Score = 55.8 bits (133), Expect = 6e-08
Identities = 47/191 (24%), Positives = 66/191 (34%), Gaps = 22/191 (11%)
Frame = +2
Query: 122 VTECKVDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCA 301
++ CK D +C A +C CGR C + E C D G+ + + + +
Sbjct: 95 LSSCKTDFNCKAHFKCCQFACGRKCM-----DPYEEPCMLPSDKGNCQDILTRW--YFDS 147
Query: 302 PVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCS-----------PIQRREACEHQCR 448
HQ + + C+ + A T C C P Q R C C+
Sbjct: 148 QKHQCRAFL-YSGCRGN----ANNFLTKTDCRNACMFVEKKGQCPLFPFQMRMECPASCK 202
Query: 449 EDRDCGSGHQCVRKGCGHVCAPVHQVDVGIC-----------VTECRVDQDCGEGRLCIS 595
D DC +C CG +CA V V G C +C D DC C +
Sbjct: 203 NDMDCPEKEKCCESRCGFICARVWLVKTGFCPRKPIVCSKIDKPKCLQDIDCPLDEKCCT 262
Query: 596 NGCGRVCFPGR 628
CG C R
Sbjct: 263 R-CGLKCLKPR 272
>ref|NP_001156449.1| multiple epidermal growth factor-like domains protein 6 precursor
[Mus musculus].
Length = 1572
Score = 36.6 bits (83), Expect(2) = 4e-07
Identities = 43/169 (25%), Positives = 54/169 (31%), Gaps = 1/169 (0%)
Frame = +2
Query: 113 GICVTECKVDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCREDRDCGSGHQCVRKGCGH 292
G+ C+ C G C +C P R CE C R G
Sbjct: 1124 GMFGVHCEEHCACRKGATCHHVTGACLCPPGWRGSHCE------------QACPRGWFGE 1171
Query: 293 VCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCREDRDC-GS 469
CA G + C G T GC + C P + CEH C+ C G
Sbjct: 1172 ACAQRCHCPPGASCHHVSGECHCPPG--FTGPGCEQACQPGTFGKDCEHPCQ----CPGE 1225
Query: 470 GHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVC 616
C VCA G T+C+ Q C GR GC ++C
Sbjct: 1226 TWACHPASGACVCA------AGYHGTDCQ--QRCPSGR--YGPGCEQIC 1264
Score = 35.8 bits (81), Expect(2) = 4e-07
Identities = 33/139 (23%), Positives = 43/139 (30%), Gaps = 18/139 (12%)
Frame = +3
Query: 606 AVSASQGDKREGCEHQCREDRDCGSGHRCVRNGCGHVCAPVHQVGICVTECNVDQ----- 770
+++ QG C H C CG G C +C P G C C D+
Sbjct: 1291 SLACPQGRFGPSCAHVCT----CGQGAACDPVSGTCICPPGKTGGHCERGCPQDRFGKGC 1346
Query: 771 ----DCGGGKQC--TSNGC-------GRVCSPVHQVDVGICVTECQVDQDCGEGRPCTSN 911
C G C T+ C G C H G C ++ C C
Sbjct: 1347 EHKCACRNGGLCHATNGSCSCPLGWMGPHCE--HACPAGRYGAACLLECSCQNNGSCEPT 1404
Query: 912 GCGRVCSPAQQKEACEHQC 968
+C P +ACE C
Sbjct: 1405 SGACLCGPGFYGQACEDTC 1423
>ref|NP_663344.2| WAP four-disulfide core domain 5 precursor [Mus musculus].
Length = 126
Score = 52.0 bits (123), Expect = 9e-07
Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 25/98 (25%)
Frame = +3
Query: 603 VAVSASQGDKREGCE------------HQCREDRDCGSGHRCVRNGCGHVCAPVHQV--G 740
VA+ +GDK GC QC D+ C S +C R C C P V G
Sbjct: 21 VALCRKKGDKLGGCPPDDGLCNQNTPPDQCLNDKQCPSSWKCCRRACFLQCMPRVFVKSG 80
Query: 741 ICVTE-----------CNVDQDCGGGKQCTSNGCGRVC 821
C + CN D DC G K+C ++ CGR C
Sbjct: 81 KCPVDQLRCLSPTKHMCNKDSDCSGKKRCCASACGRDC 118
>ref|NP_001028368.2| NFX1-type zinc finger-containing protein 1 [Mus musculus].
Length = 1909
Score = 50.8 bits (120), Expect = 2e-06
Identities = 45/152 (29%), Positives = 59/152 (38%), Gaps = 27/152 (17%)
Frame = +2
Query: 182 CGRVCSPVRR-REACEHQCRED--RDCGSGHQCVRKGCGHV----CAPVHQVDVGI---C 331
C CS + R C H C ED R C S V CGH C V + G+ C
Sbjct: 1365 CQEPCSKILRCGHRCSHLCGEDCVRLC-SERVTVELKCGHSQLVKCGNVEDIKYGLPVKC 1423
Query: 332 VTECKVDQDCGAGRRCTSNGC------GRVCSPIQRREACEHQCRE---------DRDCG 466
T+C DCG + + C R P +R C H+C+E R C
Sbjct: 1424 TTKCDTTLDCGHPCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQEPCTGECPPCQRTCQ 1483
Query: 467 SG--HQCVRKGCGHVCAPVHQVDVGICVTECR 556
+ H +K CG +C+P V CV C+
Sbjct: 1484 NRCVHSQCKKKCGELCSPC----VEPCVWRCQ 1511
Score = 48.9 bits (115), Expect = 7e-06
Identities = 40/147 (27%), Positives = 54/147 (36%), Gaps = 17/147 (11%)
Frame = +2
Query: 119 CVTECKVDQDCGAGRRCTSNGC------GRVCSPVRRREACEHQCRE---------DRDC 253
C T+C DCG + + C R P +R C H+C+E R C
Sbjct: 1423 CTTKCDTTLDCGHPCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQEPCTGECPPCQRTC 1482
Query: 254 GSG--HQCVRKGCGHVCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRRE 427
+ H +K CG +C+P CV C RC C ++CS R
Sbjct: 1483 QNRCVHSQCKKKCGELCSP--------CVEPCVW--------RCQHYQCTKLCSEPCNRP 1526
Query: 428 ACEHQCREDRDCGSGHQCVRKGCGHVC 508
C C + C GH C+ CG C
Sbjct: 1527 PCYVPCTKLLAC--GHPCIGL-CGEPC 1550
>ref|NP_598682.2| nuclear transcription factor, X-box binding-like 1 [Mus musculus].
Length = 918
Score = 49.3 bits (116), Expect = 6e-06
Identities = 50/179 (27%), Positives = 68/179 (37%), Gaps = 17/179 (9%)
Frame = +2
Query: 140 DQDCGAGRRCTSNGCGRVCS-------PVRRREACEHQ-------CRED-RDCGSGHQCV 274
DQ CG C ++ C +VC P + +C Q C ED CG +
Sbjct: 369 DQVCGKTLPCGNHTCEQVCHVGACGECPRSGKRSCPCQKSKFSLPCTEDVPTCGDSCDKI 428
Query: 275 RKGCG-HVCAP-VHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCR 448
+ CG H C+ H+ C E V++ C G+ C + CE +C
Sbjct: 429 LE-CGIHRCSQRCHRGPCETCRQE--VEKQCRCGKHTKRMPC-------HKPYLCETKCV 478
Query: 449 EDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFPG 625
+ RDC HQC RK C C P DQ+CG C ++ C VC G
Sbjct: 479 KMRDCQK-HQCRRKCCPGNCPPC--------------DQNCGRTLGCRNHKCPSVCHRG 522
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,835,155
Number of extensions: 1781835
Number of successful extensions: 7549
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7106
Number of HSP's successfully gapped: 23
Length of query: 380
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 277
Effective length of database: 12,523,851
Effective search space: 3469106727
Effective search space used: 3469106727
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012522
(1140 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_542181.1| WAP four-disulfide core domain protein 3 precur... 94 2e-19
Alignment gi|NP_061978.6| tenascin-X isoform 1 precursor [Homo sapiens]. 47 8e-09
Alignment gi|NP_115822.1| multiple epidermal growth factor-like domains p... 40 5e-08
Alignment gi|NP_006094.3| WAP four-disulfide core domain protein 2 precur... 53 5e-07
Alignment gi|NP_941960.1| keratin-associated protein 10-4 [Homo sapiens]. 41 2e-06
Alignment gi|NP_570966.2| WAP four-disulfide core domain protein 8 precur... 49 7e-06
Alignment gi|NP_852611.2| WAP four-disulfide core domain protein 8 precur... 49 7e-06
>ref|NP_542181.1| WAP four-disulfide core domain protein 3 precursor [Homo sapiens].
Length = 231
Score = 94.0 bits (232), Expect = 2e-19
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 32/175 (18%)
Frame = +2
Query: 194 CSPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQ---------VDVGICVTECK 346
C P + C+ C+ D C + +C GCG +C + + + C+ C
Sbjct: 33 CPP--HKNPCKELCQGDELCPAEQKCCTTGCGRICRDIPKGRKRDCPRVIRKQSCLKRCI 90
Query: 347 VDQDCGAGRRCTSNGCGRVCS-PIQRREA-------------CEHQCREDRDCGSGHQCV 484
D+ C ++C + GC + C PI +++ CE C D C GH+C
Sbjct: 91 TDETCPGVKKCCTLGCNKSCVVPISKQKLAEFGGECPADPLPCEELCDGDASCPQGHKCC 150
Query: 485 RKGCGHVC---------APVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVCFP 622
GCG C +V VG+C+ C +D++C G C +GCGR C P
Sbjct: 151 STGCGRTCLGDIEGGRGGDCPKVLVGLCIVGCVMDENCQAGEKCCKSGCGRFCVP 205
Score = 80.5 bits (197), Expect = 3e-15
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 34/166 (20%)
Frame = +2
Query: 119 CVTECKVDQDCGAGRRCTSNGCGRVCSP-----------VRRREACEHQCREDRDCGSGH 265
C C+ D+ C A ++C + GCGR+C V R+++C +C D C
Sbjct: 40 CKELCQGDELCPAEQKCCTTGCGRICRDIPKGRKRDCPRVIRKQSCLKRCITDETCPGVK 99
Query: 266 QCVRKGCGHVC-APVHQ-----------VDVGICVTECKVDQDCGAGRRCTSNGCGRVC- 406
+C GC C P+ + D C C D C G +C S GCGR C
Sbjct: 100 KCCTLGCNKSCVVPISKQKLAEFGGECPADPLPCEELCDGDASCPQGHKCCSTGCGRTCL 159
Query: 407 ----------SPIQRREACEHQCREDRDCGSGHQCVRKGCGHVCAP 514
P C C D +C +G +C + GCG C P
Sbjct: 160 GDIEGGRGGDCPKVLVGLCIVGCVMDENCQAGEKCCKSGCGRFCVP 205
Score = 70.9 bits (172), Expect = 2e-12
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Frame = +3
Query: 630 KREGCEHQCREDRDCGSGHRCVRNGCGHVCA-PVHQVGI-------------CVTECNVD 767
+++ C +C D C +C GC C P+ + + C C+ D
Sbjct: 81 RKQSCLKRCITDETCPGVKKCCTLGCNKSCVVPISKQKLAEFGGECPADPLPCEELCDGD 140
Query: 768 QDCGGGKQCTSNGCGRVC---------SPVHQVDVGICVTECQVDQDCGEGRPCTSNGCG 920
C G +C S GCGR C +V VG+C+ C +D++C G C +GCG
Sbjct: 141 ASCPQGHKCCSTGCGRTCLGDIEGGRGGDCPKVLVGLCIVGCVMDENCQAGEKCCKSGCG 200
Query: 921 RVCSP 935
R C P
Sbjct: 201 RFCVP 205
Score = 63.2 bits (152), Expect = 4e-10
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 23/119 (19%)
Frame = +3
Query: 642 CEHQCREDRDCGSGHRCVRNGCGHVCAPVHQ-----------VGICVTECNVDQDCGGGK 788
C+ C+ D C + +C GCG +C + + C+ C D+ C G K
Sbjct: 40 CKELCQGDELCPAEQKCCTTGCGRICRDIPKGRKRDCPRVIRKQSCLKRCITDETCPGVK 99
Query: 789 QCTSNGCGRVC-SPVHQ-----------VDVGICVTECQVDQDCGEGRPCTSNGCGRVC 929
+C + GC + C P+ + D C C D C +G C S GCGR C
Sbjct: 100 KCCTLGCNKSCVVPISKQKLAEFGGECPADPLPCEELCDGDASCPQGHKCCSTGCGRTC 158
Score = 52.8 bits (125), Expect = 6e-07
Identities = 47/214 (21%), Positives = 74/214 (34%), Gaps = 14/214 (6%)
Frame = +2
Query: 539 CVTECRVDQDCGEGRLCISNGCGRVC--FPGRQERGLRAPVQRRQGLWEWTSMREEWLWA 712
C C+ D+ C + C + GCGR+C P ++R ++++ L
Sbjct: 40 CKELCQGDELCPAEQKCCTTGCGRICRDIPKGRKRDCPRVIRKQSCL------------- 86
Query: 713 RLRPRPSSRYLCDGVQRRPGLWGRKTMHQQRVWACLLPRPSSRCRYLCDGVPGRPGLWGR 892
R + C GV++ L K+ C++P + P P
Sbjct: 87 ---KRCITDETCPGVKKCCTLGCNKS--------CVVPISKQKLAEFGGECPADP----- 130
Query: 893 KTMHQQWMWPCLLPSPAKRGLRAPMQRRQDCGSGHHCLRKGCGHVC------------PP 1036
PC C GH C GCG C P
Sbjct: 131 --------LPC----------EELCDGDASCPQGHKCCSTGCGRTCLGDIEGGRGGDCPK 172
Query: 1037 IPSGSICVTECNVNQDCGAGRRCTXNGCGRVCSP 1138
+ G +C+ C ++++C AG +C +GCGR C P
Sbjct: 173 VLVG-LCIVGCVMDENCQAGEKCCKSGCGRFCVP 205
>ref|NP_061978.6| tenascin-X isoform 1 precursor [Homo sapiens].
Length = 4242
Score = 46.6 bits (109), Expect(2) = 8e-09
Identities = 49/188 (26%), Positives = 66/188 (35%), Gaps = 17/188 (9%)
Frame = +2
Query: 113 GICVTECKVDQDCGAGRRC-----TSNGCGRVCSP--VRRREACEHQCREDRDCGSGHQC 271
G C +C C GR T CG P + R C R SG C
Sbjct: 185 GSCPDDCNDQGRCVRGRCVCFPGYTGPSCGWPSCPGDCQGRGRCVQGVCVCRAGFSGPDC 244
Query: 272 VRKGCGHVCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCRE 451
++ C C+ + + G CV + G C C R CS +R CE+
Sbjct: 245 SQRSCPRGCSQRGRCEGGRCVCDPGY-----TGDDCGMRSCPRGCS---QRGRCENGRCV 296
Query: 452 DRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTE-------CRVDQ---DCGEGRLCISNG 601
+G C + C C+ + G CV + C DCGEG C+
Sbjct: 297 CNPGYTGEDCGVRSCPRGCSQRGRCKDGRCVCDPGYTGEDCGTRSCPWDCGEGGRCVDGR 356
Query: 602 CGRVCFPG 625
C VC+PG
Sbjct: 357 C--VCWPG 362
Score = 32.0 bits (71), Expect(2) = 8e-09
Identities = 38/135 (28%), Positives = 46/135 (34%), Gaps = 33/135 (24%)
Frame = +3
Query: 666 RDCGSGHRCVRNGCGHVCAPVHQ-----VGICVTECNVDQDCGGGK----------QCTS 800
RDC RC C +C + V C +CN C G+ C S
Sbjct: 375 RDCRGRGRCEDGEC--ICDTGYSGDDCGVRSCPGDCNQRGRCEDGRCVCWPGYTGTDCGS 432
Query: 801 NGCGRVCSPVHQVDVGICV-------TECQVDQ---DC-GEGRPCTSNGC-------GRV 926
C R C + + G+CV +C V DC G GR C S C GR
Sbjct: 433 RACPRDCRGRGRCENGVCVCNAGYSGEDCGVRSCPGDCRGRGR-CESGRCMCWPGYTGRD 491
Query: 927 CSPAQQKEACEHQCR 971
C AC CR
Sbjct: 492 CG----TRACPGDCR 502
>ref|NP_115822.1| multiple epidermal growth factor-like domains protein 10 precursor
[Homo sapiens].
Length = 1140
Score = 40.0 bits (92), Expect(2) = 5e-08
Identities = 52/203 (25%), Positives = 72/203 (35%), Gaps = 38/203 (18%)
Frame = +2
Query: 131 CKVDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCREDR---DCGSGHQCVR-KGC---- 286
C + C G C + C+P R E CE C++ +C C GC
Sbjct: 495 CNLTCQCLNGGACNTLDGTCTCAPGWRGEKCELPCQDGTYGLNCAERCDCSHADGCHPTT 554
Query: 287 GHV-CAP----VHQVDV---GICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQ 442
GH C P VH V G C + C G C+ + C+P R C+
Sbjct: 555 GHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRI 614
Query: 443 CREDRDCGSGHQCVR--KGCGHVCAPVHQVDVGIC-----VTECRVDQDCGEGRL----- 586
C GH+C + C H P H + G+C T ++ C GR
Sbjct: 615 CSPG---FYGHRCSQTCPQCVHSSGPCHHI-TGLCDCLPGFTGALCNEVCPSGRFGKNCA 670
Query: 587 ----CISNG-CGRV-----CFPG 625
C +NG C + C+PG
Sbjct: 671 GICTCTNNGTCNPIDRSCQCYPG 693
Score = 35.8 bits (81), Expect(2) = 5e-08
Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Frame = +3
Query: 663 DRDCGSGHRCVRNGCGHVCAPVHQVGICVTECNVDQDC-----GGGKQCTSNGCGRVCSP 827
DR C + + C C P H C+ CN G +CT G C+
Sbjct: 685 DRSCQCYPGWIGSDCSQPCPPAHWGPNCIHTCNCHNGAFCSAYDGECKCTPGWTGLYCT- 743
Query: 828 VHQVDVGICVTECQVDQDCGEGRPCTSNGCGRVCSPAQQKEACEHQC 968
+ +G +C + C G C C CE +C
Sbjct: 744 -QRCPLGFYGKDCALICQCQNGADCDHISGQCTCRTGFMGRHCEQKC 789
Score = 37.4 bits (85), Expect(2) = 1e-07
Identities = 43/149 (28%), Positives = 56/149 (37%), Gaps = 21/149 (14%)
Frame = +3
Query: 612 SASQGDKREGCEH--QCREDRDCGSGHRCVRNGCGHVCAPVHQVGICVTECNVDQDCGGG 785
+ S G E C+ C+ DC S V C CAP + C T C + G
Sbjct: 399 TCSPGFYGEACQQICSCQNGADCDS----VTGKC--TCAPGFKGIDCSTPCPLGTY---G 449
Query: 786 KQCTSN-GCGR--VCSPV----------HQVDVGICVTE------CQVDQDCGEGRPCTS 908
C+S GC VCSPV H VD I C + C G C +
Sbjct: 450 INCSSRCGCKNDAVCSPVDGSCTCKAGWHGVDCSIRCPSGTWGFGCNLTCQCLNGGACNT 509
Query: 909 NGCGRVCSPAQQKEACEHQCREDRTVGVD 995
C+P + E CE C +D T G++
Sbjct: 510 LDGTCTCAPGWRGEKCELPC-QDGTYGLN 537
Score = 37.0 bits (84), Expect(2) = 1e-07
Identities = 45/173 (26%), Positives = 56/173 (32%), Gaps = 13/173 (7%)
Frame = +2
Query: 137 VDQDCGAGRRCTSNGCGRVCSPVRRREACEHQCREDRDCGSGHQC--VRKGC-------G 289
V +C T C +C P + CE +C C +G C V C G
Sbjct: 206 VTGECRCPPGYTGAFCEDLCPPGKHGPQCEQRC----PCQNGGVCHHVTGECSCPSGWMG 261
Query: 290 HVCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREACEHQCREDRD--- 460
VC G C + C G C + CSP E C+ +C
Sbjct: 262 TVCG--QPCPEGRFGKNCSQECQCHNGGTCDAATGQCHCSPGYTGERCQDECPVGTYGVL 319
Query: 461 CGSGHQCVRKG-CGHVCAPVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVC 616
C QCV G C HV G C+ E + E RLC G C
Sbjct: 320 CAETCQCVNGGKCYHVS--------GACLCEAGFAGERCEARLCPEGLYGIKC 364
>ref|NP_006094.3| WAP four-disulfide core domain protein 2 precursor [Homo sapiens].
Length = 124
Score = 53.1 bits (126), Expect = 5e-07
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Frame = +3
Query: 714 VCAPVHQVGICVTECNVDQDCGGGKQCTSNGCGRVCSPVH-------QVDV-----GICV 857
VC + C EC D +C +C S GC CS + QV++ G+C
Sbjct: 35 VCPELQADQNCTQECVSDSECADNLKCCSAGCATFCSLPNDKEGSCPQVNINFPQLGLCR 94
Query: 858 TECQVDQDCGEGRPCTSNGCGRV 926
+CQVD C C NGCG+V
Sbjct: 95 DQCQVDSQCPGQMKCCRNGCGKV 117
Score = 52.4 bits (124), Expect = 8e-07
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Frame = +2
Query: 191 VCSPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVH-------QVDV-----GICV 334
VC ++ + C +C D +C +C GC C+ + QV++ G+C
Sbjct: 35 VCPELQADQNCTQECVSDSECADNLKCCSAGCATFCSLPNDKEGSCPQVNINFPQLGLCR 94
Query: 335 TECKVDQDCGAGRRCTSNGCGRV 403
+C+VD C +C NGCG+V
Sbjct: 95 DQCQVDSQCPGQMKCCRNGCGKV 117
Score = 52.0 bits (123), Expect = 1e-06
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Frame = +2
Query: 401 VCSPIQRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVH-------QVDV-----GICV 544
VC +Q + C +C D +C +C GC C+ + QV++ G+C
Sbjct: 35 VCPELQADQNCTQECVSDSECADNLKCCSAGCATFCSLPNDKEGSCPQVNINFPQLGLCR 94
Query: 545 TECRVDQDCGEGRLCISNGCGRV 613
+C+VD C C NGCG+V
Sbjct: 95 DQCQVDSQCPGQMKCCRNGCGKV 117
Score = 51.6 bits (122), Expect = 1e-06
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Frame = +3
Query: 636 EGCEHQCREDRDCGSGHRCVRNGCGHVCAPVH--------------QVGICVTECNVDQD 773
+ C +C D +C +C GC C+ + Q+G+C +C VD
Sbjct: 43 QNCTQECVSDSECADNLKCCSAGCATFCSLPNDKEGSCPQVNINFPQLGLCRDQCQVDSQ 102
Query: 774 CGGGKQCTSNGCGRV 818
C G +C NGCG+V
Sbjct: 103 CPGQMKCCRNGCGKV 117
>ref|NP_941960.1| keratin-associated protein 10-4 [Homo sapiens].
Length = 401
Score = 41.2 bits (95), Expect(2) = 2e-06
Identities = 40/159 (25%), Positives = 54/159 (33%), Gaps = 12/159 (7%)
Frame = +2
Query: 176 NGCGRVCSPVRRREACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECKVDQ 355
+GC C+P +C Q C + C + C VC CV C D
Sbjct: 79 SGCTSSCTP-----SCCQQSSCQLACCASSPCQQACCVPVCCKTVCCKPVCCVPVCCGDS 133
Query: 356 DC-----GAGRRCTSNGCGRVCS-PIQRREAC---EHQCREDRDCGSGHQCVRKGCGH-V 505
C CTS+ C + C PI + C C + C S CV C V
Sbjct: 134 SCCQQSSCQSACCTSSPCQQACCVPICCKPVCSGISSSCCQQSSCVS---CVSSPCCQAV 190
Query: 506 C--APVHQVDVGICVTECRVDQDCGEGRLCISNGCGRVC 616
C +P + C C C + C S+ C + C
Sbjct: 191 CEPSPCQSGCISSCTPSCCQQSSC-QPACCTSSSCQQAC 228
Score = 29.6 bits (65), Expect(2) = 2e-06
Identities = 30/116 (25%), Positives = 38/116 (32%), Gaps = 7/116 (6%)
Frame = +3
Query: 642 CEHQCREDRDCGSGHRCVRNGCGHVCAPVH--QVGICVTECNVDQDCGG-GKQCTSNGCG 812
C+ C ED S C ++ C C Q CV C C G +G
Sbjct: 239 CKPVCSED----SSSCCQQSSCQPACCTSSPCQQACCVPVCCKPVCCKPVGSVPICSGAS 294
Query: 813 RVCSPVHQVDVGICVTECQVDQDCGEGRPCTSNGCGRVCSPAQ----QKEACEHQC 968
+C C T Q Q C C C VCS A Q+ +C+ C
Sbjct: 295 SLCCQQSSCQPACC-TSSQSQQGCCVPVCCKPVSCVPVCSGASSSCCQQSSCQPAC 349
>ref|NP_570966.2| WAP four-disulfide core domain protein 8 precursor [Homo sapiens].
Length = 241
Score = 49.3 bits (116), Expect = 7e-06
Identities = 49/198 (24%), Positives = 66/198 (33%), Gaps = 27/198 (13%)
Frame = +2
Query: 119 CVTE----CKVDQDCGAGRRCTSNGCGRVCS---------PVRRREACEHQCREDRDCGS 259
C TE C D DC ++C C + C PVR C H+ +
Sbjct: 58 CTTELPDSCNTDFDCKEYQKCCFFACQKKCMDPFQEPCMLPVRHGN-CNHEAQRWHFDFK 116
Query: 260 GHQCVR---KGCGHVCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREA 430
++C +GC D C T C + G +C P R+
Sbjct: 117 NYRCTPFKYRGCEGNANNFLNEDA--CRTACMLIVKDG---QCP-------LFPFTERKE 164
Query: 431 CEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGIC-----------VTECRVDQDCGE 577
C C D DC +C CG VCA V G C +C D++C
Sbjct: 165 CPPSCHSDIDCPQTDKCCESRCGFVCARAWTVKKGFCPRKPLLCTKIDKPKCLQDEECPL 224
Query: 578 GRLCISNGCGRVCFPGRQ 631
C S+ CG C R+
Sbjct: 225 VEKCCSH-CGLKCMDPRR 241
>ref|NP_852611.2| WAP four-disulfide core domain protein 8 precursor [Homo sapiens].
Length = 241
Score = 49.3 bits (116), Expect = 7e-06
Identities = 49/198 (24%), Positives = 66/198 (33%), Gaps = 27/198 (13%)
Frame = +2
Query: 119 CVTE----CKVDQDCGAGRRCTSNGCGRVCS---------PVRRREACEHQCREDRDCGS 259
C TE C D DC ++C C + C PVR C H+ +
Sbjct: 58 CTTELPDSCNTDFDCKEYQKCCFFACQKKCMDPFQEPCMLPVRHGN-CNHEAQRWHFDFK 116
Query: 260 GHQCVR---KGCGHVCAPVHQVDVGICVTECKVDQDCGAGRRCTSNGCGRVCSPIQRREA 430
++C +GC D C T C + G +C P R+
Sbjct: 117 NYRCTPFKYRGCEGNANNFLNEDA--CRTACMLIVKDG---QCP-------LFPFTERKE 164
Query: 431 CEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGIC-----------VTECRVDQDCGE 577
C C D DC +C CG VCA V G C +C D++C
Sbjct: 165 CPPSCHSDIDCPQTDKCCESRCGFVCARAWTVKKGFCPRKPLLCTKIDKPKCLQDEECPL 224
Query: 578 GRLCISNGCGRVCFPGRQ 631
C S+ CG C R+
Sbjct: 225 VEKCCSH-CGLKCMDPRR 241
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,767,030
Number of extensions: 2139607
Number of successful extensions: 9329
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8856
Number of HSP's successfully gapped: 25
Length of query: 380
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,868,908
Effective search space: 4103818608
Effective search space used: 4103818608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012522
(1140 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 192 3e-46
>Sscrofa_Chr12
|| Length = 63588571
Score = 192 bits (97), Expect = 3e-46
Identities = 103/105 (98%)
Strand = Plus / Minus
Query: 3 ttaccaccgaccagtcctcagccggcaacatgaagctgggtggcctctgcctcctgctcc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41126829 ttaccaccgaccagtcctcagccggcaacatgaagctgggtggcctctgcctcctgctcc 41126770
Query: 63 tcctcgccgtccttctcaccctcaatgcagagctccaggcagttg 107
|||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 41126769 tcctcgccgtccttctcaccctcaatgcagagttccaagcagttg 41126725
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,912,340
Number of extensions: 201
Number of successful extensions: 201
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 1
Length of query: 1140
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1119
Effective length of database: 2,808,413,156
Effective search space: 3142614321564
Effective search space used: 3142614321564
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)