Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012525
(1320 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538245.2| PREDICTED: similar to Low-density lipoprotein r... 73 7e-13
Alignment gi|NP_001182078.1| tenascin [Canis lupus familiaris]. 71 2e-12
Alignment gi|XP_534452.2| PREDICTED: similar to Protein KIAA1404 [Canis f... 71 2e-12
Alignment gi|XP_546739.2| PREDICTED: similar to EGF-like-domain, multiple... 71 2e-12
Alignment gi|XP_544929.2| PREDICTED: similar to keratin associated protei... 67 3e-11
Alignment gi|XP_535946.2| PREDICTED: similar to Low-density lipoprotein r... 64 3e-10
Alignment gi|XP_544928.2| PREDICTED: similar to keratin associated protei... 64 4e-10
Alignment gi|XP_549791.2| PREDICTED: similar to keratin associated protei... 62 9e-10
Alignment gi|XP_547524.2| PREDICTED: similar to MEGF10 protein [Canis fam... 62 1e-09
Alignment gi|XP_858228.1| PREDICTED: similar to notch 2 preproprotein iso... 62 2e-09
>ref|XP_538245.2| PREDICTED: similar to Low-density lipoprotein receptor-related
protein 1 precursor (LRP) (Alpha-2-macroglobulin
receptor) (A2MR) (Apolipoprotein E receptor) (APOER)
(CD91) [Canis familiaris].
Length = 4526
Score = 72.8 bits (177), Expect = 7e-13
Identities = 99/407 (24%), Positives = 140/407 (34%), Gaps = 60/407 (14%)
Frame = +3
Query: 9 QCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTE--------CNVDQDCGEGRQ----C 152
+C +CG G + C V +Q +T+ C+ D DC +G C
Sbjct: 3414 RCNGQDNCGDGED--ERDCPEVTCAPNQFQCSITKRCIPRVWVCDRDNDCVDGSDEPANC 3471
Query: 153 TSNGCGRVCSPVQQEDVGICV---MECKVDQDCGEGRRCTSNGCG-RVCSPVQ---QKEA 311
T CG + +D G C+ +C + DCG+G C R C P Q +
Sbjct: 3472 TQMTCG--VDEFRCKDSGRCIPARWKCDGEDDCGDGSDEPKEECDERTCEPYQFRCKNNR 3529
Query: 312 C---EHQCREDRDCGSG---HQCVRKGCGHV---CAPVHQVDVGICVT---ECRVDQDCG 455
C QC D DCG C + C CA G C+ +C D DC
Sbjct: 3530 CVPGRWQCDYDNDCGDNSDEESCTPRPCSESEFSCAN------GRCIAGRWKCDGDHDCA 3583
Query: 456 EGRQCTSNGCGRVCSPAQQREACEH------QCREDKDCGSGHQCVRKGCGHVCSPIPQV 617
+G C C Q + H +C D DC G G G P+ +
Sbjct: 3584 DGSD--EKDCTPRCDMDQFQCKSGHCIPLRWRCDADADCMDGSDEEACGTGVRTCPLDEF 3641
Query: 618 ----SIC---VTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVN---------RCRGN 749
++C +C+ + DCG C R PP C N +C G
Sbjct: 3642 QCNNTLCKPLAWKCDGEDDCGDNSDENPEECARFVCPPNRPFRCKNDRVCLWIGRQCDGT 3701
Query: 750 WDCGAGEECIRKGCGRVCSP--AQEPVVGICVDQCRRHWECGPRMRCVSTG--CGHI--C 911
+CG G + C P AQ P C D ++ + C RC+S+ C C
Sbjct: 3702 DNCGDGTD------EEDCEPPTAQTP---HCKD--KKEFLC-RNQRCLSSSLRCNMFDDC 3749
Query: 912 SPAQDQVEQRPGKCPVLPKGT-IGLCAEFCSGDDSCPSGQKCCSHGC 1049
D+ + C + PK T A C + C +K C
Sbjct: 3750 GDGSDEED-----CSIDPKLTSCATNASICGDEARCVRTEKAAYCAC 3791
Score = 59.7 bits (143), Expect = 6e-09
Identities = 82/326 (25%), Positives = 108/326 (33%), Gaps = 60/326 (18%)
Frame = +3
Query: 114 CNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGI-CVME---CKVDQDCGEGRRCTSNGCGR 281
C+ + DC G T C + CS Q E C+ + C DCG+G ++ G+
Sbjct: 2697 CDKEDDCEHGEDETH--CNKFCSEAQFECQNHRCISKQWLCDGSDDCGDGSDEAAHCEGK 2754
Query: 282 VCSPVQQKEACEH-------QCREDRDCGSG-HQCVRKGC--------------GHVCAP 395
C P H C D+DC G + V GC C P
Sbjct: 2755 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESVTAGCLYNSTCDDREFMCQNRQCIP 2814
Query: 396 VHQVDVGICVTECRVDQDCGEGR----QCTSNGC---------GRVCSPAQQREACEHQC 536
H V C D+DC +G +C C GR S Q E+ C
Sbjct: 2815 KHFV--------CDHDRDCTDGSDESPECEYPTCGPNEFRCANGRCLSSRQWECDGENDC 2866
Query: 537 REDKD-------CGSGHQCVRKGCGHVCSPIPQVSICVTE---CNVDQDCGAG---RRCT 677
+ D C S +CS CV E CN DCG G R C
Sbjct: 2867 HDQSDEAPKNPHCTSPEHKCNASSQFLCSS----GRCVAEALLCNGQDDCGDGSDERACH 2922
Query: 678 SN--------GCGRVCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGI 833
N GC + C + G C RCR + K GR C+
Sbjct: 2923 VNECLSRKLSGCSQDCEDLKIGFKC--RCRPGFRL--------KDDGRTCAD-------- 2964
Query: 834 CVDQCRRHWECGPRMRCVSTGCGHIC 911
VD+C + C RC++T + C
Sbjct: 2965 -VDECSSTFPCS--QRCINTHGSYKC 2987
Score = 57.0 bits (136), Expect = 4e-08
Identities = 76/294 (25%), Positives = 109/294 (37%), Gaps = 41/294 (13%)
Frame = +3
Query: 114 CNVDQDCGEGRQCTSNGCG-RVCSPVQQEDV-GICV---MECKVDQDCGEGRRCTSNGCG 278
C+ D DCG ++ C R C P Q G C+ C +D DCG+ +++
Sbjct: 914 CDGDNDCGNSEDESNATCSARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAY 973
Query: 279 RVCSPVQQKEACEH--------QCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTEC 434
C P+ Q C + +C ++DCG G K C A +C
Sbjct: 974 PTCFPLTQF-TCNNGRCININWRCDNEKDCGDGSD--EKTCPEPAATRPPGGCHNDEFQC 1030
Query: 435 RVDQDCGEGR-QCTSNGCGRVCSPAQQREACE---HQCRED-----KDCGSGHQCVRKGC 587
R+D C R +C + C + ++CE H C + KD G +G
Sbjct: 1031 RLDSLCIPLRWRCDGD---TDCMDSSDEKSCEGVTHVCDPNVKFGCKDSGKKKDGRERGL 1087
Query: 588 GHVCSPIPQVSICVTE---CNVDQDCGAG---RRCTSNGCGRVCSP-PQGGGLCV---NR 737
G ++ C+++ C+ D DC C S C P +C+
Sbjct: 1088 GQYGQKEIVLTRCISKAWVCDGDSDCEDNSDEENCESLACRPPSHPCANNTSVCLPLDKL 1147
Query: 738 CRGNWDCGAG-------EECI--RKGCGRVCSPAQEPVVGICVDQCRRHWECGP 872
C GN DCG G ++C GC CS A P GI V C E GP
Sbjct: 1148 CDGNDDCGDGSDEGELCDQCSLNNGGCSHNCSVA--PGEGI-VCSCPLGMELGP 1198
>ref|NP_001182078.1| tenascin [Canis lupus familiaris].
Length = 2201
Score = 71.2 bits (173), Expect = 2e-12
Identities = 113/416 (27%), Positives = 143/416 (34%), Gaps = 58/416 (13%)
Frame = +3
Query: 3 EH-QCREDR----DCGSGHQCVRKGCGHVCAPVHQVGICV-TECNVDQDCGEGRQCTSNG 164
EH +C E R D +G C C + C H G CV EC C EG T
Sbjct: 259 EHGRCVEGRCVCQDGFAGEDCSEPLCLNSC---HNRGRCVENECV----CDEG--FTGED 309
Query: 165 CGRVCSPVQQEDVGICVM-ECKVDQ-----DCGE--------GR-RCTSNGCGRVCSPVQ 299
C + P D G CV C +Q DCG+ GR RC C VC P
Sbjct: 310 CSELICPNDCFDRGRCVNGTCYCEQGFSGEDCGQLSCPNACTGRGRCEQGQC--VCEPGF 367
Query: 300 QKEAC-EHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTEC---RVDQDCGEGRQ 467
C + C DC +CV C + D G +C + + C
Sbjct: 368 AGPDCSDRSC--PNDCHHRGRCVHGRC--------ECDAGFGGPDCGQLQCPRGCSGHGH 417
Query: 468 CTSNGCGRVCSPAQQREACEHQCREDKDCGSGHQCVRKGCGHVCSPIPQVSICVTECNVD 647
C + C VC E C Q R DC S +CV+ C VC P Q C ++ +
Sbjct: 418 CVNGQC--VCDEGHTGEDCG-QLRCPNDCHSRGRCVQGQC--VCEPGFQGYDC-SDMSCP 471
Query: 648 QDCGAGRRCTSNGCGRVCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVV 827
DC RC + C VC D GE+C C R CS V
Sbjct: 472 NDCHQHGRCVNGMC--VCD----------------DGYTGEDCRDLRCPRDCSDRGRCVA 513
Query: 828 GICVDQCRRHW------------ECGPRMRCVSTGCGHIC----SPAQDQVEQRPGKCP- 956
G C +C + +C + RCV+ C +C + A Q + PG C
Sbjct: 514 GRC--ECEHGFTGPDCADLACPADCHGQGRCVNGQC--VCHEGFTGATCQERRCPGDCQG 569
Query: 957 ---------VLPKGTIG------LCAEFCSGDDSCPSGQKCCSHG-CGHSCQTAVP 1076
+G G C CSG C G+ CS G G C P
Sbjct: 570 RGRCEDGRCTCQEGFTGPDCGQRSCPNGCSGWGQCVEGRCVCSEGHAGEDCSQVSP 625
Score = 63.2 bits (152), Expect = 6e-10
Identities = 97/373 (26%), Positives = 124/373 (33%), Gaps = 68/373 (18%)
Frame = +3
Query: 132 CGEGRQCTSNGCGRVCSPVQQE---DVGICVMECKVDQDCGEGR-RCTSNGCGRVCSPVQ 299
C ++ GCG VC P + C C + C +G+ C G CS +
Sbjct: 161 CSGRGNFSTEGCGCVCEPGWKGPNCSEPECPGNCHLRGQCLDGQCVCDEGFTGEDCSQL- 219
Query: 300 QKEACEHQCREDRDCGSGHQCVRKG-----CG-HVCAPVHQVDVGICVTECRVDQDCGEG 461
AC C + C SG +G CG VC + G CV V QD G
Sbjct: 220 ---ACPSDCNDQGKCVSGVCVCFEGYTGADCGDEVCPVPCNEEHGRCVEGRCVCQDGFAG 276
Query: 462 RQCTSNGCGRVCSPAQQREAC-EHQCREDKDCGSGHQCVRKGCGHVCSPIPQV--SICVT 632
C+ C C R C E++C D+ +G C C + C + C
Sbjct: 277 EDCSEPLCLNSC---HNRGRCVENECVCDEGF-TGEDCSELICPNDCFDRGRCVNGTCYC 332
Query: 633 ECNVD-QDCG--------AGR-RCTSNGCGRVCSPPQGGGLCVNR------------CRG 746
E +DCG GR RC C VC P G C +R G
Sbjct: 333 EQGFSGEDCGQLSCPNACTGRGRCEQGQC--VCEPGFAGPDCSDRSCPNDCHHRGRCVHG 390
Query: 747 NWDCGA---GEECIRKGCGRVCSPAQEPVVGICV----------DQCRRHWECGPRMRCV 887
+C A G +C + C R CS V G CV Q R +C R RCV
Sbjct: 391 RCECDAGFGGPDCGQLQCPRGCSGHGHCVNGQCVCDEGHTGEDCGQLRCPNDCHSRGRCV 450
Query: 888 STGCGHICSPAQDQVEQRPGKCP--------------VLPKGTIG------LCAEFCSGD 1007
C +C P + CP V G G C CS
Sbjct: 451 QGQC--VCEPGFQGYDCSDMSCPNDCHQHGRCVNGMCVCDDGYTGEDCRDLRCPRDCSDR 508
Query: 1008 DSCPSGQKCCSHG 1046
C +G+ C HG
Sbjct: 509 GRCVAGRCECEHG 521
>ref|XP_534452.2| PREDICTED: similar to Protein KIAA1404 [Canis familiaris].
Length = 1928
Score = 71.2 bits (173), Expect = 2e-12
Identities = 86/302 (28%), Positives = 115/302 (38%), Gaps = 42/302 (13%)
Frame = +3
Query: 54 RKGCGHVCAPV-------HQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQ---QEDV 203
R GCGHVC H+ C+ C C +G +C C + C P Q ++ +
Sbjct: 1306 RLGCGHVCTRACHPYDSSHKEFQCMKPCQ-KVICQDGHRCPLV-CFQECQPCQVKVRKII 1363
Query: 204 GICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCRED--RDCGSGHQCVRKGC 377
C E V E C C +V ++ C H C ED R C S V+ C
Sbjct: 1364 VRCGHEQMVPCSMPESDFCCQEPCPKV---LKCGHRCSHPCGEDCVRLC-SEMVTVKLKC 1419
Query: 378 GHV----CAPVHQVDVGI---CVTECRVDQDCGEGRQCTSNGC------GRVCSPAQQRE 518
GH C V + + C T+C DCG T + C R P ++
Sbjct: 1420 GHSQQVKCGNVEDLMYDLPVKCTTKCGTILDCGHPCPGTCHSCFEGRFHERCQQPCKRLL 1479
Query: 519 ACEHQCRED--KDCGS-----GHQCV----RKGCGHVCSPIPQVSICVTECNVDQDCGAG 665
C H+C+E ++C ++CV +K CG +CSP CV C
Sbjct: 1480 ICSHKCQEPCIRECPPCQRTCQNRCVHSQCKKKCGELCSP------CVEPCVW------- 1526
Query: 666 RRCTSNGCGRVCSPPQGGGLCVNRCRGNWDCG------AGEECIRKGCGRVCSPAQEPVV 827
RC C ++CS P C C CG GE C +K C RVC QE V
Sbjct: 1527 -RCQHYQCTKLCSEPCNRPPCYVPCTKLLACGHPCIGLCGEPCPKK-C-RVCH--QEEVT 1581
Query: 828 GI 833
I
Sbjct: 1582 QI 1583
Score = 53.9 bits (128), Expect = 3e-07
Identities = 56/204 (27%), Positives = 77/204 (37%), Gaps = 17/204 (8%)
Frame = +3
Query: 39 GHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICVM 218
GH+C CG C V +C V CG +Q CG V + V C
Sbjct: 1394 GHRCSHP-CGEDC-----VRLCSEMVTVKLKCGHSQQVK---CGNVEDLMYDLPVK-CTT 1443
Query: 219 ECKVDQDCGEGRRCTSNGC------GRVCSPVQQKEACEHQCRED--RDCGS-----GHQ 359
+C DCG T + C R P ++ C H+C+E R+C ++
Sbjct: 1444 KCGTILDCGHPCPGTCHSCFEGRFHERCQQPCKRLLICSHKCQEPCIRECPPCQRTCQNR 1503
Query: 360 CV----RKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACE 527
CV +K CG +C+P V CV C+ Q C ++CS R C
Sbjct: 1504 CVHSQCKKKCGELCSPC----VEPCVWRCQHYQ------------CTKLCSEPCNRPPCY 1547
Query: 528 HQCREDKDCGSGHQCVRKGCGHVC 599
C + C GH C+ CG C
Sbjct: 1548 VPCTKLLAC--GHPCIGL-CGEPC 1568
>ref|XP_546739.2| PREDICTED: similar to EGF-like-domain, multiple 3 [Canis familiaris].
Length = 1534
Score = 71.2 bits (173), Expect = 2e-12
Identities = 96/381 (25%), Positives = 122/381 (32%), Gaps = 25/381 (6%)
Frame = +3
Query: 6 HQCREDRDCGSGHQC--VRKGCGHVCAPVHQVGICVTEC---NVDQDCGEGRQCTSNGCG 170
H C + C +G C V C C P C+ C + Q+C C G
Sbjct: 963 HNCSQTCSCFNGASCDPVHGQCH--CGPGWMGSTCLEACPTGSYGQNCQHTCLCQHGG-- 1018
Query: 171 RVCSPVQQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGS 350
C PV G C C EG T C C P + C+H CR C +
Sbjct: 1019 -TCDPVS----GHCT--------CPEG--WTGLACEEECLPGRFGAGCKHSCR----CLN 1059
Query: 351 GHQCVRKG-------------CGHVCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGCGR 491
G C R+ C +CA G C C G C
Sbjct: 1060 GGDCDRRSGRCLCPAGWTGDQCQSLCAE------GTFGVRCEEHCACRRGATCHHVTGAC 1113
Query: 492 VCSPAQQREACEHQCREDKDCGSGHQCVRKGCGHVCSPIPQVSICVTECNVDQDCGAGRR 671
+C P + CE+ C H + C C P + C +V +C R
Sbjct: 1114 LCPPGWRGSRCENACP--------HGWFGEACAQRCQ-CPPGAACH---HVTGECRCPRG 1161
Query: 672 CTSNGCGRVCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCR 851
T GC + C P G C G++C G + C PA +G CV
Sbjct: 1162 FTGPGCEQACPPGTFGESC------------GQKCHCPGENQACHPA----LGTCVCAAG 1205
Query: 852 RHWECGPRMRC----VSTGCGHICSPAQ-DQVEQRPGKCPVLPKGTIGLCAEFCSGDDSC 1016
H G R RC GC C + G C + P G +G SC
Sbjct: 1206 YHGS-GCRQRCPPGRFGPGCEQPCGCLNGGSCDAATGAC-LCPAGFLGADCSL-----SC 1258
Query: 1017 PSGQ--KCCSHGCGHSCQTAV 1073
P G C+H CG C AV
Sbjct: 1259 PQGHFGPGCAHVCG--CGQAV 1277
Score = 67.8 bits (164), Expect = 2e-11
Identities = 102/398 (25%), Positives = 131/398 (32%), Gaps = 61/398 (15%)
Frame = +3
Query: 66 GHV-CAPVHQVGICVTECNVDQ---DCGEGRQCTSNGCGRVCSPVQQEDVGICVMEC--- 224
GH CAP C C+ + DC C S G G C V G+CV E
Sbjct: 809 GHCSCAPGWTGLSCQRACDGGRWGPDCSHPCTC-SPGHGS-CDAVS----GLCVCEAGYT 862
Query: 225 --KVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGHQCVRKGCGHVCAPV 398
+ +Q C +G GCGR C CEH D G+ C G +C
Sbjct: 863 GPRCEQRCPQGH--FGPGCGRQCQ-------CEHGAACDHVSGAC-TCPAGWRGALCE-- 910
Query: 399 HQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACE---------HQCREDKD 551
G +CR DC G C S +C +Q C+ H C +
Sbjct: 911 RACPAGFFGLDCRGVCDCAAGAPCDSVSGSCLCPAGRQGPRCDQACPAHTYGHNCSQTCS 970
Query: 552 CGSGHQC--VRKGCGHVCSPIPQVSICVTEC---NVDQDCGAGRRCTSNG---------- 686
C +G C V C C P S C+ C + Q+C C G
Sbjct: 971 CFNGASCDPVHGQCH--CGPGWMGSTCLEACPTGSYGQNCQHTCLCQHGGTCDPVSGHCT 1028
Query: 687 ---------CGRVCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPA---QEPVVG 830
C C P + G C + CR C G +C R+ GR PA +
Sbjct: 1029 CPEGWTGLACEEECLPGRFGAGCKHSCR----CLNGGDCDRRS-GRCLCPAGWTGDQCQS 1083
Query: 831 ICVD-----QCRRHWECGPRMRCVSTGCGHICSPAQDQVEQRPGKCP-VLPKGTIG-LCA 989
+C + +C H C C +C P R +C P G G CA
Sbjct: 1084 LCAEGTFGVRCEEHCACRRGATCHHVTGACLCPPG-----WRGSRCENACPHGWFGEACA 1138
Query: 990 EFCSGDDSCPSGQKC--------CSHG-CGHSCQTAVP 1076
+ C CP G C C G G C+ A P
Sbjct: 1139 QRC----QCPPGAACHHVTGECRCPRGFTGPGCEQACP 1172
Score = 55.8 bits (133), Expect = 9e-08
Identities = 80/345 (23%), Positives = 102/345 (29%), Gaps = 28/345 (8%)
Frame = +3
Query: 12 CREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQ 191
C + C +G C +C G +C++ C +G GC VC
Sbjct: 1224 CEQPCGCLNGGSCDAATGACLCP----AGFLGADCSLS--CPQGH--FGPGCAHVCG--- 1272
Query: 192 QEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCR---------EDRDC 344
G V V C T C C + CEH C D C
Sbjct: 1273 ---CGQAVTCDPVTGSCACPPGTTGTHCEHGCPQNRFGVNCEHVCSCRNGGLCHASDGSC 1329
Query: 345 GSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREAC 524
G C C P H CR++ C C C P +AC
Sbjct: 1330 SCGLGWTGPNCEQACPPGHYG------AACRLECSCQNNGTCEPTTGACRCGPGFYGQAC 1383
Query: 525 EHQ---------CREDKDCGSGHQC--VRKGC-------GHVCSPIPQVSICVTECNVDQ 650
+H CR +C G C V C G +C + C
Sbjct: 1384 QHACPPGFHGAGCRAACECQHGASCDPVSGQCVCPAGFYGQLCEKGCEPGSFGEGCREHC 1443
Query: 651 DCGAGRRCTSNGCGRVCSPPQGGGLCVNRCRGNWDCGAGEEC-IRKGCGRVCSPAQEPVV 827
DC G C +C P + G C CR ++ G C +R CG A +PV
Sbjct: 1444 DCEMGAACDPITGQCLCPPGRTGATCDLDCRPDF---FGPGCALRCSCGG--GAACDPVS 1498
Query: 828 GICVDQCRRHWECGPRMRCVSTGCGHICSPAQDQVEQRPGKCPVL 962
G C RCV G C QV +P P L
Sbjct: 1499 GQC--------------RCVDGYMGPTC----QQVASQPAHGPAL 1525
>ref|XP_544929.2| PREDICTED: similar to keratin associated protein 10-8 [Canis
familiaris].
Length = 328
Score = 67.4 bits (163), Expect = 3e-11
Identities = 73/300 (24%), Positives = 94/300 (31%), Gaps = 11/300 (3%)
Frame = +3
Query: 48 CVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQ----CTSNGCGRVCSPVQQEDVGICV 215
C CG P G C C C EG C C VC + C
Sbjct: 66 CTPASCGSSPCPPACPGSCQPSCGSCSPCQEGCGVSVCCKPVCCTPVCCKPLCCESSPCC 125
Query: 216 MECKVDQDCGEGRRCTSNGCGRVC-SPVQQKEACEHQCREDRDCGSGHQCVRKGCGHVCA 392
+ C C C VC PV C C + C S C + C C
Sbjct: 126 QQSSCQPSCCNSSPCQEGCCVSVCCKPV----CCTPVCCKPLCCESSPCCQQSSCQPSCC 181
Query: 393 PVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVC---SPAQQREACEHQCREDKDCGSG 563
G CV+ C C CT C +C SP Q+ +C+ C C G
Sbjct: 182 NSSPCQEGCCVSVC-CKPVC-----CTPVCCKPLCCEASPCCQQSSCQPSCGSCSPCQEG 235
Query: 564 HQCVRKGCGHVC-SPI--PQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVN 734
C+ C VC +P+ S+C + + C + C + C VC P +C
Sbjct: 236 C-CMSVCCKPVCCTPVCCKPSSLCCQQSSCQPSCCSSSPCQEDSCVSVCCKP----MC-- 288
Query: 735 RCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHICS 914
C VC +PV CV C P+ VS C +CS
Sbjct: 289 ------------------CTPVCC---KPVPACCVPLSPCQPSCCPQASSVSLLCRPMCS 327
Score = 66.6 bits (161), Expect = 5e-11
Identities = 83/309 (26%), Positives = 97/309 (31%), Gaps = 29/309 (9%)
Frame = +3
Query: 222 CKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGH----QCVRKGCGHVC 389
C D CG GR C+ + C S Q + C+ C E C C CG
Sbjct: 20 CSSDLSCG-GRLCSPSAC---TSSSWQVDDCQETCCEPPCCAPASCLTLLCTPASCGS-- 73
Query: 390 APVHQVDVGICVTECRVDQDCGEGRQ---------CTSNGCGRVC---SPAQQREACEHQ 533
+P G C C C EG CT C +C SP Q+ +C+
Sbjct: 74 SPCPPACPGSCQPSCGSCSPCQEGCGVSVCCKPVCCTPVCCKPLCCESSPCCQQSSCQPS 133
Query: 534 CREDKDCGSGHQCVRKGCGHVC-------------SPIPQVSICVTECNVDQDCGAGRRC 674
C C G CV C VC SP Q S C C C G C
Sbjct: 134 CCNSSPCQEGC-CVSVCCKPVCCTPVCCKPLCCESSPCCQQSSCQPSCCNSSPCQEGC-C 191
Query: 675 TSNGCGRVCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCRR 854
S C VC P C C C C + CG CSP QE G C+ C
Sbjct: 192 VSVCCKPVCCTPV---CCKPLCCEASPCCQQSSC-QPSCGS-CSPCQE---GCCMSVC-- 241
Query: 855 HWECGPRMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKC 1034
C P C + C C P+ LC + S SC S C
Sbjct: 242 ---CKPV--CCTPVC---CKPSS-------------------LCCQQSSCQPSCCSSSPC 274
Query: 1035 CSHGCGHSC 1061
C C
Sbjct: 275 QEDSCVSVC 283
>ref|XP_535946.2| PREDICTED: similar to Low-density lipoprotein receptor-related
protein 2 precursor (Megalin) (Glycoprotein 330) (gp330)
[Canis familiaris].
Length = 4646
Score = 63.9 bits (154), Expect = 3e-10
Identities = 106/411 (25%), Positives = 139/411 (33%), Gaps = 63/411 (15%)
Frame = +3
Query: 9 QCREDRDCGSGHQCVRKGCG-HVCAPVHQV---GICVT---ECNVDQDCGEG-------- 143
+C D DCG G + C H C P G CV C+ DCG+
Sbjct: 2714 KCDNDNDCGDGSDELESVCAFHTCQPTAFTCANGRCVQYHYRCDHYNDCGDNSDEAGCLF 2773
Query: 144 RQCTS----NGCGRVCSPVQQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEA 311
R+C + R C P+Q GI C D D + + C+ C Q
Sbjct: 2774 RECNATVEFTCSNRRCIPLQFVCNGI--NNCH-DNDTSDEKNCSDRTCQPGYVKCQTTNI 2830
Query: 312 C---EHQCREDRDCGSGHQCVRKGC-GHVC-APVHQVDVGICVTE---CRVDQDCGEG-- 461
C + C ED DCG C H C + G C+ + C + DC +G
Sbjct: 2831 CIPHFYLCDEDNDCGDMSDESPVFCASHTCSSDEFPCTSGRCIPKHWYCDEEGDCPDGSD 2890
Query: 462 RQCTSNGCGRVCSPAQ---QREAC---EHQCREDKDCGS-GHQCVRKGCG-HVCSP---- 605
T C ++ C E C D DCG + R CG H CS
Sbjct: 2891 EPATCEYLEATCLSSEFKCDSGRCIREEWICDGDNDCGDMSDEDERHHCGNHNCSSSEFL 2950
Query: 606 ----IPQVSICVTE---CNVDQDCGAG----RRCTSNGCGR---VCSPPQGGGLCV---N 734
+P C+ + C+ D DC G + CT C CS GLCV
Sbjct: 2951 CANNVPPSRKCIPKSWVCDGDADCTDGYDEHQNCTRRSCSGNDFTCS----NGLCVPHSY 3006
Query: 735 RCRGNWDCGAGEECIRKGCG-RVCSPAQEPVV-GICV---DQCRRHWECGPRMRCVSTGC 899
RC DCG + + C CS Q G+C+ D C +C R S
Sbjct: 3007 RCDRRNDCGDYSD--ERNCSYSTCSENQFTCQNGLCIYKQDVCDGENDC----RDGSDEL 3060
Query: 900 GHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCG 1052
H+C + KC G A+ C+ D C GCG
Sbjct: 3061 EHLCHTPETTCPPHQFKC---DNGNCIDMAKVCNHLDDCSDNSD--EKGCG 3106
Score = 55.5 bits (132), Expect = 1e-07
Identities = 103/443 (23%), Positives = 140/443 (31%), Gaps = 90/443 (20%)
Frame = +3
Query: 18 EDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQD-----CGEGRQCTSNGCGRVCS 182
+ + C + GC H+CAP G EC + + C + R S
Sbjct: 2643 QQQQCSNPCSEFNGGCSHICAP----GPNGAECQCPHEGHWYLANNKKHCIVDNGTRCDS 2698
Query: 183 PVQQEDVGICVME---CKVDQDCGEGRRCTSNGCG-RVCSP----------VQQKEACEH 320
G C++E C D DCG+G + C C P VQ C+H
Sbjct: 2699 SKFTCLNGHCILEQWKCDNDNDCGDGSDELESVCAFHTCQPTAFTCANGRCVQYHYRCDH 2758
Query: 321 QCREDRDCGSGHQ---CVRKGCGHV---------CAPVHQVDVGICVTECRVDQDCGEGR 464
DCG C+ + C C P+ V GI C D D + +
Sbjct: 2759 Y----NDCGDNSDEAGCLFRECNATVEFTCSNRRCIPLQFVCNGI--NNCH-DNDTSDEK 2811
Query: 465 QCTSNGCGRVCSPAQQREAC---EHQCREDKDCGSGHQCVRKGC-GHVCS--PIPQVS-I 623
C+ C Q C + C ED DCG C H CS P S
Sbjct: 2812 NCSDRTCQPGYVKCQTTNICIPHFYLCDEDNDCGDMSDESPVFCASHTCSSDEFPCTSGR 2871
Query: 624 CVTE---CNVDQDC--GAGRRCTSNGCGRVCSPPQ---GGGLCVNR---CRGNWDCG-AG 767
C+ + C+ + DC G+ T C + G C+ C G+ DCG
Sbjct: 2872 CIPKHWYCDEEGDCPDGSDEPATCEYLEATCLSSEFKCDSGRCIREEWICDGDNDCGDMS 2931
Query: 768 EECIRKGCG------------------RVCSPAQEPVVG--ICVDQCRRHWECGPRMRCV 887
+E R CG R C P G C D H C R C
Sbjct: 2932 DEDERHHCGNHNCSSSEFLCANNVPPSRKCIPKSWVCDGDADCTDGYDEHQNC-TRRSCS 2990
Query: 888 S---TGCGHICSP----------AQDQVEQRPGKCPVLPKGTI----GLC---AEFCSGD 1007
T +C P D ++R + GLC + C G+
Sbjct: 2991 GNDFTCSNGLCVPHSYRCDRRNDCGDYSDERNCSYSTCSENQFTCQNGLCIYKQDVCDGE 3050
Query: 1008 DSCPSGQKCCSHGCGHSCQTAVP 1076
+ C G H C H+ +T P
Sbjct: 3051 NDCRDGSDELEHLC-HTPETTCP 3072
Score = 51.6 bits (122), Expect = 2e-06
Identities = 93/403 (23%), Positives = 132/403 (32%), Gaps = 70/403 (17%)
Frame = +3
Query: 63 CGHVCAPV---HQVGICVTECNVDQD---CGE--GRQCTSNGCGRVCSPVQQEDVGICV- 215
C H C PV +V C N+ + C E + CG + P G CV
Sbjct: 982 CSHFCFPVPNFQRVCGCPYGMNLTSNHLTCQEDPSHEPPMEQCGSLSFPCSN---GRCVP 1038
Query: 216 --MECKVDQDCGEGRRCTSNGCGRV---CSPVQQKEACEH--------QCREDRDCGSG- 353
C DC + + CG++ C+P C H +C + DC G
Sbjct: 1039 SNYRCDGVDDCHDNS--DEHLCGKMNNTCAP--SAFTCGHGECIPAHWKCDKQSDCVDGS 1094
Query: 354 --HQCVRKGCGHVCAPVHQVDVGICVTE---CRVDQDCGEGRQCTSNGCGRVCSPAQQRE 518
C + A D +C+ C D DC +G + C P+Q R
Sbjct: 1095 DEQNCPSQAPTSCPASFFTCDNHLCIPRSWLCDTDNDCADGSDEKNCQFTETCLPSQFR- 1153
Query: 519 ACEHQCRE-------DKDCGSGHQCVRKGC-------GHVCSPIPQVSICVTECNVDQDC 656
+H+C + DKDC G GC C+ + + C+ DC
Sbjct: 1154 CPDHRCIDLSFVCDGDKDCVDGSD--EAGCVINCTASQFKCASEDRCISSIYHCDGVFDC 1211
Query: 657 GAGR---RCTSNGCGRVCSPP----QGGGLCVNRCRGNWDCGAGEECI-----RKGCG-R 797
C++ G +C P Q G+C+ + +W+C ++CI GC R
Sbjct: 1212 SDQSDEIDCSTRPPG-MCHPDEFQCQADGVCIPK---SWECDGHQDCILGSDEHHGCAPR 1267
Query: 798 VCSPAQEPV-VGICVDQCRRHWECGPRMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKGT 974
C P+ G C+ R W C C C CP
Sbjct: 1268 TCPPSHFLCDNGNCI---YRDWLCDGDNDCRDMSDEKDCPTQAFHCPSWQWLCP-----G 1319
Query: 975 IGLCAEF---CSGDDSCPSG--------QKCCSH---GCGHSC 1061
+C C G CP+G Q CS GC H C
Sbjct: 1320 YSICVNLSAVCDGISDCPNGTDESPLCNQDSCSDSNGGCTHQC 1362
>ref|XP_544928.2| PREDICTED: similar to keratin associated protein 10-7 [Canis
familiaris].
Length = 339
Score = 63.5 bits (153), Expect = 4e-10
Identities = 91/360 (25%), Positives = 114/360 (31%), Gaps = 18/360 (5%)
Frame = +3
Query: 12 CREDRDCGSGHQCVRKGCGHVCA-PVHQVGICVTECNVDQDCGEGR----QCTSNGCGRV 176
C D G G C+ G G C P QV C C CT CG
Sbjct: 9 CSSDLSYG-GRVCL-PGSGDSCPDPSWQVDDCPESYCEPPCCAPASCLTLLCTPASCGS- 65
Query: 177 CSPVQQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGH 356
SP G C C C EG C + C SP Q+ +C+ C C
Sbjct: 66 -SPCPPACPGSCQPSCGSCSPCQEG--CGVSPCS--ASPCCQQSSCQPSCCSSSPCQED- 119
Query: 357 QCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVC---SPAQQREACE 527
CV C VC C C C C + C C SP Q+ ++C
Sbjct: 120 SCVSLCCKPVCCTPVCCKPVCCTPVCCKPMCCESSPCCQQSSCQPSCCSSSPCQE-DSCV 178
Query: 528 HQCREDKDCGSGHQCVRKGCGHVCSPIP------QVSICVTECNVDQDCGAGRRCTSNGC 689
C + C C + C C+P+ + S C + C + C + C
Sbjct: 179 SVCCKPVCCTP--VCCKPVC---CTPVCCKPVCCKASPCCQHPSCQPSCCSSSPCQEDSC 233
Query: 690 GRVCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCRRHWECG 869
G VC P +C C C C VC A C + C
Sbjct: 234 GSVCCKP----VCCTPVCCKPVCCTPVCCKLICCKPVCCQA---------SPCCQPSPCR 280
Query: 870 PRMRCVSTGCGHICSPAQDQVEQ--RPGKCPVLPKGTIGLCAEFCSGDDSC--PSGQKCC 1037
P CVS C +C PA +P C ++ LC CS C S QK C
Sbjct: 281 P-SSCVSLLCRPVCRPACCATPSPCQPSCCRQASSVSL-LCRPVCSRQACCGPSSAQKSC 338
Score = 53.9 bits (128), Expect = 3e-07
Identities = 74/258 (28%), Positives = 85/258 (32%), Gaps = 12/258 (4%)
Frame = +3
Query: 324 CREDRDCGSGHQCVRKGCGHVCA-PVHQVD---VGICVTECRVDQDCGEGRQCTSNGCGR 491
C D G G C+ G G C P QVD C C C CT CG
Sbjct: 9 CSSDLSYG-GRVCL-PGSGDSCPDPSWQVDDCPESYCEPPCCAPASCLT-LLCTPASCGS 65
Query: 492 VCSPAQQREACEHQCREDKDCGSGHQCVRKGCG-HVCSPIP--QVSICVTECNVDQDCGA 662
P AC C+ CGS C ++GCG CS P Q S C C C
Sbjct: 66 SPCPP----ACPGSCQPS--CGSCSPC-QEGCGVSPCSASPCCQQSSCQPSCCSSSPCQE 118
Query: 663 GRRCTSNGCGRVCSPPQ--GGGLCVNRCRGNWDCGAGEECIRKGCGRVC---SPAQEPVV 827
C S C VC P C C C + C + C C SP QE
Sbjct: 119 DS-CVSLCCKPVCCTPVCCKPVCCTPVCCKPMCCESSPCCQQSSCQPSCCSSSPCQEDS- 176
Query: 828 GICVDQCRRHWECGPRMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGD 1007
CV C + C P + C C +C +P C P C + S
Sbjct: 177 --CVSVCCKPVCCTP-VCCKPVCCTPVCC--------KPVCCKASP------CCQHPSCQ 219
Query: 1008 DSCPSGQKCCSHGCGHSC 1061
SC S C CG C
Sbjct: 220 PSCCSSSPCQEDSCGSVC 237
>ref|XP_549791.2| PREDICTED: similar to keratin associated protein 4-12 isoform 1
[Canis familiaris].
Length = 211
Score = 62.4 bits (150), Expect = 9e-10
Identities = 58/222 (26%), Positives = 73/222 (32%), Gaps = 10/222 (4%)
Frame = +3
Query: 165 CGRVCSPVQQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQ--QKEACEHQCREDR 338
CG +CS +Q CG+ C C C + C C
Sbjct: 6 CGSICS----------------EQGCGQETCCRPTCCQTTCCRTTCCRPSCCVSSCCRPS 49
Query: 339 DCGS---GHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQ 509
CGS G C R C C++ C C C S+ C C +
Sbjct: 50 CCGSSSCGSSCCRPSC--------------CISSC-CRPSCSSSSCCGSSCCRPSCCISS 94
Query: 510 QREACEHQCREDKDCGSGHQCVRKGCGHVCSPIP-QVSICVTECNVDQDCGAG----RRC 674
C C CGS C R C C P Q + C T C C + RC
Sbjct: 95 ---CCRPSCSSSSCCGSS--CCRPTC---CQPTCCQTTCCRTTCCRPSCCVSSCCHPSRC 146
Query: 675 TSNGCGRVCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRV 800
S+GCG C P C++ C + C C+R CGRV
Sbjct: 147 GSSGCGSSCCRP---SCCISSC-CHPSCCCPSCCLRPVCGRV 184
Score = 51.6 bits (122), Expect = 2e-06
Identities = 57/217 (26%), Positives = 67/217 (30%), Gaps = 14/217 (6%)
Frame = +3
Query: 30 CGSGHQCVRKGCGH--VCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDV 203
CGS C +GCG C P C T C C C S+ C C
Sbjct: 6 CGS--ICSEQGCGQETCCRPT----CCQTTC-CRTTCCRPSCCVSSCCRPSCCGSSSCGS 58
Query: 204 GICVMECKVDQDCGEGRRCTSNGC--GRVCSP-VQQKEACEHQCREDRDCGSGHQCVRKG 374
C C + C C+S+ C C P C C CGS C R
Sbjct: 59 SCCRPSCCISSCCRPS--CSSSSCCGSSCCRPSCCISSCCRPSCSSSSCCGS--SCCRPT 114
Query: 375 CGH-VCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGCG-RVCSPAQQREACEHQCREDK 548
C C C C V C R C S+GCG C P+ +C H
Sbjct: 115 CCQPTCCQTTCCRTTCCRPSCCVSSCCHPSR-CGSSGCGSSCCRPSCCISSCCHPSCCCP 173
Query: 549 DCGSGHQCVRKGCGHVC-------SPIPQVSICVTEC 638
C C R C C S P+ C + C
Sbjct: 174 SCCLRPVCGRVSCHTTCYRPTCVISTCPRPMCCASSC 210
>ref|XP_547524.2| PREDICTED: similar to MEGF10 protein [Canis familiaris].
Length = 1039
Score = 62.0 bits (149), Expect = 1e-09
Identities = 81/335 (24%), Positives = 110/335 (32%), Gaps = 39/335 (11%)
Frame = +3
Query: 63 CGHVCAP-VHQVGICVTECNVDQD-----------CGEGRQCTSNGCGRVCSPVQQEDVG 206
C +C P + VG C C+ D C EG Q C CSP G
Sbjct: 433 CASLCPPDTYGVG-CSARCSCDNAIACSPIDGACVCKEGWQ--RGNCSVPCSP------G 483
Query: 207 ICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGHQCV-RKGCGH 383
C C C+ C+P C+ C + + G C R C H
Sbjct: 484 TWGFGCNASCQCAHEAACSPQTGACTCTPGWHGTHCQLPCPKGQ---FGEGCASRCDCDH 540
Query: 384 V--CAPVH---QVDVGICVTECRVDQD-------------CGEGRQCTSNGCGRVCSPAQ 509
C PVH Q G T C + C G C VC+P
Sbjct: 541 SDGCDPVHGHCQCQAGWTGTRCHLPCPEGFWGANCSNTCTCKNGGTCIPENGNCVCTPGF 600
Query: 510 QREACEHQCREDKDCGSGHQCVRKGCGH--VCSPIPQVSICV---TECNVDQDCGAGRRC 674
+ +C+ C+ + G +CV C + C+P C+ T N Q C GR
Sbjct: 601 RGPSCQRSCQPGR---YGKRCVPCKCANHSSCNPSDGTCYCLPGWTGTNCSQSCPRGR-- 655
Query: 675 TSNGCGRVCSPP---QGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQ 845
G C+ P + GG C + G+ C G G +C P G+
Sbjct: 656 ----WGANCAQPCLCRHGGTCHPQ-HGSCSCPPG------WTGHLCLEGCSP--GMFGAN 702
Query: 846 CRRHWECGPRMRCVSTGCGHICSPAQDQVEQRPGK 950
C + +CGP RC +C P R G+
Sbjct: 703 CSQLCQCGPGERCHPETGACLCPPGYSGAPCRIGE 737
Score = 58.2 bits (139), Expect = 2e-08
Identities = 113/451 (25%), Positives = 140/451 (31%), Gaps = 94/451 (20%)
Frame = +3
Query: 9 QCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPV 188
QC + CG+ C K +C Q C+ C+ Q G Q G C P
Sbjct: 142 QCDKPCHCGNSSSCDPKSGACLCPSGLQPPHCLQPCHPGQ-YGPACQLRCQCHGAPCDP- 199
Query: 189 QQEDVGICVME------------------CKVDQDCGEGR---------RCTSNGCGRVC 287
Q C +E C C G C G +C
Sbjct: 200 -QTGACFCPLERTGPSCEVACLRDTRGFSCPSTYPCHNGGVFQASQGSCSCPPGWMGTIC 258
Query: 288 SPVQQKEACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTEC---RVDQDCGE 458
S + C ++ C +G C R C P + D C EC R QDC E
Sbjct: 259 SLPCPEGFHGPNCSQECRCHNGGLCDRFTGQCRCTPGYTGD--RCQEECPVGRFGQDCAE 316
Query: 459 GRQCTSNGCGRVCSPAQQREACEHQCREDKDCGSGHQCVRK---------GCGHVCSPIP 611
C G C PA CEH +GH+C + C C+ P
Sbjct: 317 TCDC---ALGARCFPANGACLCEHGF-------TGHRCAERLCPDGLYGLSCQEPCTCDP 366
Query: 612 QVSICVTECNVDQDC---GAGRRCTSN--------GC--------GRVCSPPQGGGLCVN 734
+ S+ + + C AG C + GC G VC P GLC
Sbjct: 367 EHSLSCHPMSGECSCLPGWAGLYCNESCPQDTHGPGCQEHCLCLHGGVCQP--DSGLC-- 422
Query: 735 RCRGNWDCGAGEECIR--------KGCGRVCS----PAQEPVVGICVDQCRRHWE----- 863
RC + G C GC CS A P+ G CV C+ W+
Sbjct: 423 RCAPGY---TGPHCASLCPPDTYGVGCSARCSCDNAIACSPIDGACV--CKEGWQRGNCS 477
Query: 864 --CGP---RMRC-VSTGCGH--ICSPAQDQVEQRPG----KCPV-LPKGTIGL-CAEFCS 1001
C P C S C H CSP PG C + PKG G CA C
Sbjct: 478 VPCSPGTWGFGCNASCQCAHEAACSPQTGACTCTPGWHGTHCQLPCPKGQFGEGCASRCD 537
Query: 1002 GD--DSCP--SGQKCCSHG-CGHSCQTAVPD 1079
D D C G C G G C P+
Sbjct: 538 CDHSDGCDPVHGHCQCQAGWTGTRCHLPCPE 568
Score = 54.3 bits (129), Expect = 3e-07
Identities = 86/341 (25%), Positives = 108/341 (31%), Gaps = 51/341 (14%)
Frame = +3
Query: 195 EDVGICVMECKVDQDCGEGR-----RCT------SNGCGRVCSPVQQKEACEHQCREDRD 341
E G CV C Q+C GR RC + C C+P C+ C
Sbjct: 95 ESRGTCVPLCA--QECVHGRCVAPNRCQCAQGWRGDDCSSACAPGMWGPQCDKPCH---- 148
Query: 342 CGSGHQCVRKGCGHVCA----------PVHQVDVGICVTECRVDQDCGEGRQCTSNGCGR 491
CG+ C K +C P H G C++ C G C
Sbjct: 149 CGNSSSCDPKSGACLCPSGLQPPHCLQPCHPGQYG---PACQLRCQC-HGAPCDPQTGAC 204
Query: 492 VCSPAQQREACEHQCREDK---DCGSGHQCVRKGCGHV------CSPIPQVSICVTEC-- 638
C + +CE C D C S + C G C P +IC C
Sbjct: 205 FCPLERTGPSCEVACLRDTRGFSCPSTYPCHNGGVFQASQGSCSCPPGWMGTICSLPCPE 264
Query: 639 -----NVDQDCGAGRRCTSNG-CGRV-----CSPPQGGGLCVNRC---RGNWDCGAGEEC 776
N Q+C RC + G C R C+P G C C R DC +C
Sbjct: 265 GFHGPNCSQEC----RCHNGGLCDRFTGQCRCTPGYTGDRCQEECPVGRFGQDCAETCDC 320
Query: 777 IRKGCGRVCSPAQEPVV---GICVDQCRRHWECGPRMRCVSTGCGHICSPAQD-QVEQRP 944
G C PA + G +C C + +S C P
Sbjct: 321 ---ALGARCFPANGACLCEHGFTGHRCAERL-CPDGLYGLSCQEPCTCDPEHSLSCHPMS 376
Query: 945 GKCPVLPKGTIGL-CAEFCSGDDSCPSGQKCCSHGCGHSCQ 1064
G+C LP G GL C E C D P Q+ C G CQ
Sbjct: 377 GECSCLP-GWAGLYCNESCPQDTHGPGCQEHCLCLHGGVCQ 416
Score = 54.3 bits (129), Expect = 3e-07
Identities = 89/369 (24%), Positives = 111/369 (30%), Gaps = 24/369 (6%)
Frame = +3
Query: 12 CREDRDCGSGHQ--CVRKGCGHVCAPVHQVGICVTECNVDQD---CGEGRQCTSNGCGRV 176
C+E C H C C P C C D C E C G V
Sbjct: 358 CQEPCTCDPEHSLSCHPMSGECSCLPGWAGLYCNESCPQDTHGPGCQEHCLCLHGG---V 414
Query: 177 CSPVQQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGH 356
C P D G+C C G T C +C P C +C D
Sbjct: 415 CQP----DSGLC--------RCAPGY--TGPHCASLCPPDTYGVGCSARCSCDNAIA--- 457
Query: 357 QCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQC 536
C+P+ G CV C EG Q C CSP C C
Sbjct: 458 ----------CSPID----GACV--------CKEGWQ--RGNCSVPCSPGTWGFGCNASC 493
Query: 537 REDKDCGSGHQCVRKGCG------HVCSPIPQVSI---CVTECNVDQDCGAGR-----RC 674
+ + Q C H P P+ C + C+ D G +C
Sbjct: 494 QCAHEAACSPQTGACTCTPGWHGTHCQLPCPKGQFGEGCASRCDCDHSDGCDPVHGHCQC 553
Query: 675 TSNGCGRVCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCRR 854
+ G C P G C C G CI + VC+P G C+R
Sbjct: 554 QAGWTGTRCHLPCPEGFWGANCSNTCTCKNGGTCIPENGNCVCTP------GFRGPSCQR 607
Query: 855 HWECGP-RMRCVSTGCGH--ICSPAQDQVEQRPGKCPVLPKGTIGLCAEFC-SGDDSCPS 1022
+ G RCV C + C+P+ G C LP T C++ C G
Sbjct: 608 SCQPGRYGKRCVPCKCANHSSCNPSD-------GTCYCLPGWTGTNCSQSCPRGRWGANC 660
Query: 1023 GQKC-CSHG 1046
Q C C HG
Sbjct: 661 AQPCLCRHG 669
Score = 53.1 bits (126), Expect = 6e-07
Identities = 84/354 (23%), Positives = 111/354 (31%), Gaps = 20/354 (5%)
Frame = +3
Query: 60 GCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICVMECKVDQD 239
GC C +H G+C + + + C G T C +C P + G+ C
Sbjct: 402 GCQEHCLCLHG-GVCQPDSGLCR-CAPGY--TGPHCASLCPP---DTYGV---GCSARCS 451
Query: 240 CGEGRRCTSNGCGRVCSPVQQKEACEHQCREDR---DCGSGHQCVRKGCGHVCAPVHQVD 410
C C+ VC Q+ C C C + QC + C+P
Sbjct: 452 CDNAIACSPIDGACVCKEGWQRGNCSVPCSPGTWGFGCNASCQCAHEAA---CSP----Q 504
Query: 411 VGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCREDKDCGS----GH-QCV 575
G C C G T C C Q E C +C D G GH QC
Sbjct: 505 TGACT--------CTPGWHGTH--CQLPCPKGQFGEGCASRCDCDHSDGCDPVHGHCQCQ 554
Query: 576 RKGCGHVCS-PIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNRCR-GN 749
G C P P+ C+ C G C VC+P G C C+ G
Sbjct: 555 AGWTGTRCHLPCPE-GFWGANCSNTCTCKNGGTCIPENGNCVCTPGFRGPSCQRSCQPGR 613
Query: 750 WDCGAGEECIRKGCGR--VCSPAQEPVVGI-------CVDQCRR-HWECGPRMRCVSTGC 899
+ G+ C+ C C+P+ + C C R W C+
Sbjct: 614 Y----GKRCVPCKCANHSSCNPSDGTCYCLPGWTGTNCSQSCPRGRWGANCAQPCLCRH- 668
Query: 900 GHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSC 1061
G C P G C P T LC E CS + + C G G C
Sbjct: 669 GGTCHPQH-------GSCSCPPGWTGHLCLEGCSPGMFGANCSQLCQCGPGERC 715
>ref|XP_858228.1| PREDICTED: similar to notch 2 preproprotein isoform 3 [Canis
familiaris].
Length = 2473
Score = 61.6 bits (148), Expect = 2e-09
Identities = 94/384 (24%), Positives = 135/384 (35%), Gaps = 29/384 (7%)
Frame = +3
Query: 18 EDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQE 197
E +C S H C+ +G +C V +G C + G+ Q N C R SP + +
Sbjct: 1025 EINECNS-HPCLNEG---IC--VDGLGTYRCTCPLGYT-GKNCQTLVNLCSR--SPCKNK 1075
Query: 198 DVGICVMECKVDQDCGEGRRCTSNGCGRVCSP--VQQKEACEHQ-CREDRDCGSGHQCVR 368
G C+ E K + C C S G C V + A H+ D C C+
Sbjct: 1076 --GTCIQE-KAESRC----LCPSGWAGAYCDVPNVSCEVAALHRGVSTDHLCQHSGICIN 1128
Query: 369 KGCGHVCAPVHQVDVGICVTECRVDQD------CGEGRQCTS--NGCGRVCSPAQQREAC 524
G H C Q +G + C D C G C G C P Q C
Sbjct: 1129 AGNSHHC----QCPLGYTGSYCEEQLDECSSNPCQHGATCRDFIGGYRCECVPGYQGVNC 1184
Query: 525 EHQCRE--DKDCGSGHQCVRKGCGHVCSPIPQVSICVTECNVDQDCGAGRRCTSNGCGRV 698
E++ E ++ C +G CV CS P + E N+D DC G C + G
Sbjct: 1185 EYEVDECQNQPCQNGGTCVDLVNHFKCSCPPGTRGLLCEENID-DCVGGPHCLNGG---Q 1240
Query: 699 CSPPQGG-------GLCVNRCRGNWDCGAGEECIRKGCGRV----CSPAQEPVVGICVD- 842
C GG G RC G+ + EC+ C C + +C
Sbjct: 1241 CVDRIGGYSCRCLPGFAGERCEGDIN-----ECLSNPCSSEGSLDCIQLTNDYLCVCRSA 1295
Query: 843 ----QCRRHWECGPRMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDD 1010
C + P+M C++ G C+ A + + +CP G G + G
Sbjct: 1296 FTGRHCETFIDVCPQMPCLNGGT---CAVASNMPDGFICRCP---PGFSGAKCQSSCGQV 1349
Query: 1011 SCPSGQKCCSHGCGHSCQTAVPDE 1082
C G++C G C P +
Sbjct: 1350 KCRRGEQCVHTASGPRCFCPNPQD 1373
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 66,526,720
Number of extensions: 2409359
Number of successful extensions: 9916
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 9276
Number of HSP's successfully gapped: 76
Length of query: 440
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 334
Effective length of database: 15,340,888
Effective search space: 5123856592
Effective search space used: 5123856592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012525
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012525
(1320 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002695690.1| PREDICTED: hypothetical protein [Bos taurus]. 498 e-141
Alignment gi|XP_593741.4| PREDICTED: hypothetical protein [Bos taurus]. 498 e-141
Alignment gi|NP_777128.1| tenascin-X [Bos taurus]. 87 4e-17
Alignment gi|XP_002695670.1| PREDICTED: extracellular peptidase inhibitor... 84 4e-16
Alignment gi|XP_002702143.1| PREDICTED: mCG55370-like [Bos taurus]. 84 4e-16
Alignment gi|NP_001192207.1| extracellular peptidase inhibitor [Bos tauru... 80 5e-15
Alignment gi|XP_002692529.1| PREDICTED: WAP four-disulfide core domain 3 ... 73 4e-13
Alignment gi|XP_001789331.1| PREDICTED: WAP four-disulfide core domain 3 ... 73 4e-13
Alignment gi|NP_001071494.1| tenascin C [Bos taurus]. 72 1e-12
Alignment gi|NP_001192645.1| NFX1-type zinc finger-containing protein 1 [... 65 2e-10
>ref|XP_002695690.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 431
Score = 498 bits (1282), Expect = e-141
Identities = 218/369 (59%), Positives = 258/369 (69%), Gaps = 2/369 (0%)
Frame = +3
Query: 9 QCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPV 188
+C EDRDCG G QCV+ GC VC+P+ VGICV +C DQDC G +C SNGCG VCSPV
Sbjct: 69 ECSEDRDCGRGKQCVQDGCQRVCSPLMSVGICVEQCREDQDCAAGEKCISNGCGHVCSPV 128
Query: 189 QQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGHQCVR 368
Q IC +EC D+DCG G++C +GC RVCSP+ C QCRED+DC +G +CV
Sbjct: 129 PQAT--ICSLECSEDRDCGRGKQCVQDGCQRVCSPLMSVGVCVEQCREDQDCAAGEKCVS 186
Query: 369 KGCGHVCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCREDK 548
GCGHVC+PV Q IC EC D+DCG G+QC +GC RVCSP C QCRED+
Sbjct: 187 NGCGHVCSPVPQAT--ICSRECSEDRDCGRGKQCVQDGCRRVCSPLMSVGVCVEQCREDR 244
Query: 549 DCGSGHQCVRKGCGHVCSPIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSP-PQGG-G 722
DC +G +CV GCGHVCSP PQ SIC +C D+DCGAGR+C S GC RVCSP P+ G
Sbjct: 245 DCAAGEKCVSNGCGHVCSPAPQASICEFQCFRDRDCGAGRQCVSEGCNRVCSPAPEASIG 304
Query: 723 LCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCG 902
+CV RCRG+WDCGAGE CIR+GC R+CSP + VGIC+DQC+ H +C RCVS GCG
Sbjct: 305 ICVQRCRGHWDCGAGERCIRRGCSRICSPVRTAGVGICLDQCQGHRDCPAGSRCVSNGCG 364
Query: 903 HICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQTAVPDE 1082
+CSP QD+ EQRPG CP +P+G G CAE C+GD SCP GQKCCS+GCG SCQ VPD
Sbjct: 365 RVCSPTQDRQEQRPGTCPRVPEGMFGTCAERCTGDGSCPPGQKCCSNGCGKSCQ--VPD- 421
Query: 1083 KTFPSRLDD 1109
F LDD
Sbjct: 422 LDFTISLDD 430
Score = 251 bits (642), Expect = 8e-67
Identities = 112/238 (47%), Positives = 143/238 (60%), Gaps = 18/238 (7%)
Frame = +3
Query: 411 VGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCREDKDCGSGHQCVRKGCG 590
+G+CV +CR DQDC G +C SNGCG VCSPA Q C +C ED+DCG G QCV+ GC
Sbjct: 29 IGVCVEQCREDQDCVAGEKCISNGCGHVCSPAPQATICSLECSEDRDCGRGKQCVQDGCQ 88
Query: 591 HVCSPIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNRCRGNWDCGAGE 770
VCSP+ V ICV +C DQDC AG +C SNGCG VCSP +C C + DCG G+
Sbjct: 89 RVCSPLMSVGICVEQCREDQDCAAGEKCISNGCGHVCSPVPQATICSLECSEDRDCGRGK 148
Query: 771 ECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHICSP----------- 917
+C++ GC RVCSP VG+CV+QCR +C +CVS GCGH+CSP
Sbjct: 149 QCVQDGCQRVCSPLMS--VGVCVEQCREDQDCAAGEKCVSNGCGHVCSPVPQATICSREC 206
Query: 918 AQDQVEQRPGKC-------PVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQTA 1070
++D+ R +C P ++G+C E C D C +G+KC S+GCGH C A
Sbjct: 207 SEDRDCGRGKQCVQDGCRRVCSPLMSVGVCVEQCREDRDCAAGEKCVSNGCGHVCSPA 264
Score = 147 bits (371), Expect = 2e-35
Identities = 65/147 (44%), Positives = 81/147 (55%), Gaps = 18/147 (12%)
Frame = +3
Query: 3 EHQCREDRDCGSGHQCVRKGCGHVCAPVHQ--VGICVTECNVDQDCGEGRQCTSNGCGRV 176
E QC DRDCG+G QCV +GC VC+P + +GICV C DCG G +C GC R+
Sbjct: 271 EFQCFRDRDCGAGRQCVSEGCNRVCSPAPEASIGICVQRCRGHWDCGAGERCIRRGCSRI 330
Query: 177 CSPVQQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKE---------------- 308
CSPV+ VGIC+ +C+ +DC G RC SNGCGRVCSP Q ++
Sbjct: 331 CSPVRTAGVGICLDQCQGHRDCPAGSRCVSNGCGRVCSPTQDRQEQRPGTCPRVPEGMFG 390
Query: 309 ACEHQCREDRDCGSGHQCVRKGCGHVC 389
C +C D C G +C GCG C
Sbjct: 391 TCAERCTGDGSCPPGQKCCSNGCGKSC 417
Score = 110 bits (274), Expect = 4e-24
Identities = 58/167 (34%), Positives = 78/167 (46%), Gaps = 50/167 (29%)
Frame = +3
Query: 711 QGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPV---------------------- 824
Q G+CV +CR + DC AGE+CI GCG VCSPA +
Sbjct: 27 QAIGVCVEQCREDQDCVAGEKCISNGCGHVCSPAPQATICSLECSEDRDCGRGKQCVQDG 86
Query: 825 ----------VGICVDQCRRHWECGPRMRCVSTGCGHICSP-----------AQDQVEQR 941
VGICV+QCR +C +C+S GCGH+CSP ++D+ R
Sbjct: 87 CQRVCSPLMSVGICVEQCREDQDCAAGEKCISNGCGHVCSPVPQATICSLECSEDRDCGR 146
Query: 942 PGKC-------PVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSC 1061
+C P ++G+C E C D C +G+KC S+GCGH C
Sbjct: 147 GKQCVQDGCQRVCSPLMSVGVCVEQCREDQDCAAGEKCVSNGCGHVC 193
>ref|XP_593741.4| PREDICTED: hypothetical protein [Bos taurus].
Length = 431
Score = 498 bits (1282), Expect = e-141
Identities = 218/369 (59%), Positives = 258/369 (69%), Gaps = 2/369 (0%)
Frame = +3
Query: 9 QCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPV 188
+C EDRDCG G QCV+ GC VC+P+ VGICV +C DQDC G +C SNGCG VCSPV
Sbjct: 69 ECSEDRDCGRGKQCVQDGCQRVCSPLMSVGICVEQCREDQDCAAGEKCISNGCGHVCSPV 128
Query: 189 QQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGHQCVR 368
Q IC +EC D+DCG G++C +GC RVCSP+ C QCRED+DC +G +CV
Sbjct: 129 PQAT--ICSLECSEDRDCGRGKQCVQDGCQRVCSPLMSVGVCVEQCREDQDCAAGEKCVS 186
Query: 369 KGCGHVCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCREDK 548
GCGHVC+PV Q IC EC D+DCG G+QC +GC RVCSP C QCRED+
Sbjct: 187 NGCGHVCSPVPQAT--ICSRECSEDRDCGRGKQCVQDGCRRVCSPLMSVGVCVEQCREDR 244
Query: 549 DCGSGHQCVRKGCGHVCSPIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSP-PQGG-G 722
DC +G +CV GCGHVCSP PQ SIC +C D+DCGAGR+C S GC RVCSP P+ G
Sbjct: 245 DCAAGEKCVSNGCGHVCSPAPQASICEFQCFRDRDCGAGRQCVSEGCNRVCSPAPEASIG 304
Query: 723 LCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCG 902
+CV RCRG+WDCGAGE CIR+GC R+CSP + VGIC+DQC+ H +C RCVS GCG
Sbjct: 305 ICVQRCRGHWDCGAGERCIRRGCSRICSPVRTAGVGICLDQCQGHRDCPAGSRCVSNGCG 364
Query: 903 HICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQTAVPDE 1082
+CSP QD+ EQRPG CP +P+G G CAE C+GD SCP GQKCCS+GCG SCQ VPD
Sbjct: 365 RVCSPTQDRQEQRPGTCPRVPEGMFGTCAERCTGDGSCPPGQKCCSNGCGKSCQ--VPD- 421
Query: 1083 KTFPSRLDD 1109
F LDD
Sbjct: 422 LDFTISLDD 430
Score = 251 bits (642), Expect = 8e-67
Identities = 112/238 (47%), Positives = 143/238 (60%), Gaps = 18/238 (7%)
Frame = +3
Query: 411 VGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCREDKDCGSGHQCVRKGCG 590
+G+CV +CR DQDC G +C SNGCG VCSPA Q C +C ED+DCG G QCV+ GC
Sbjct: 29 IGVCVEQCREDQDCVAGEKCISNGCGHVCSPAPQATICSLECSEDRDCGRGKQCVQDGCQ 88
Query: 591 HVCSPIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNRCRGNWDCGAGE 770
VCSP+ V ICV +C DQDC AG +C SNGCG VCSP +C C + DCG G+
Sbjct: 89 RVCSPLMSVGICVEQCREDQDCAAGEKCISNGCGHVCSPVPQATICSLECSEDRDCGRGK 148
Query: 771 ECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHICSP----------- 917
+C++ GC RVCSP VG+CV+QCR +C +CVS GCGH+CSP
Sbjct: 149 QCVQDGCQRVCSPLMS--VGVCVEQCREDQDCAAGEKCVSNGCGHVCSPVPQATICSREC 206
Query: 918 AQDQVEQRPGKC-------PVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQTA 1070
++D+ R +C P ++G+C E C D C +G+KC S+GCGH C A
Sbjct: 207 SEDRDCGRGKQCVQDGCRRVCSPLMSVGVCVEQCREDRDCAAGEKCVSNGCGHVCSPA 264
Score = 147 bits (371), Expect = 2e-35
Identities = 65/147 (44%), Positives = 81/147 (55%), Gaps = 18/147 (12%)
Frame = +3
Query: 3 EHQCREDRDCGSGHQCVRKGCGHVCAPVHQ--VGICVTECNVDQDCGEGRQCTSNGCGRV 176
E QC DRDCG+G QCV +GC VC+P + +GICV C DCG G +C GC R+
Sbjct: 271 EFQCFRDRDCGAGRQCVSEGCNRVCSPAPEASIGICVQRCRGHWDCGAGERCIRRGCSRI 330
Query: 177 CSPVQQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKE---------------- 308
CSPV+ VGIC+ +C+ +DC G RC SNGCGRVCSP Q ++
Sbjct: 331 CSPVRTAGVGICLDQCQGHRDCPAGSRCVSNGCGRVCSPTQDRQEQRPGTCPRVPEGMFG 390
Query: 309 ACEHQCREDRDCGSGHQCVRKGCGHVC 389
C +C D C G +C GCG C
Sbjct: 391 TCAERCTGDGSCPPGQKCCSNGCGKSC 417
Score = 110 bits (274), Expect = 4e-24
Identities = 58/167 (34%), Positives = 78/167 (46%), Gaps = 50/167 (29%)
Frame = +3
Query: 711 QGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPV---------------------- 824
Q G+CV +CR + DC AGE+CI GCG VCSPA +
Sbjct: 27 QAIGVCVEQCREDQDCVAGEKCISNGCGHVCSPAPQATICSLECSEDRDCGRGKQCVQDG 86
Query: 825 ----------VGICVDQCRRHWECGPRMRCVSTGCGHICSP-----------AQDQVEQR 941
VGICV+QCR +C +C+S GCGH+CSP ++D+ R
Sbjct: 87 CQRVCSPLMSVGICVEQCREDQDCAAGEKCISNGCGHVCSPVPQATICSLECSEDRDCGR 146
Query: 942 PGKC-------PVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSC 1061
+C P ++G+C E C D C +G+KC S+GCGH C
Sbjct: 147 GKQCVQDGCQRVCSPLMSVGVCVEQCREDQDCAAGEKCVSNGCGHVC 193
>ref|NP_777128.1| tenascin-X [Bos taurus].
Length = 4135
Score = 86.7 bits (213), Expect = 4e-17
Identities = 108/406 (26%), Positives = 137/406 (33%), Gaps = 60/406 (14%)
Frame = +3
Query: 27 DCGSGHQCVRKGCGHVCAP---------------VHQVGICVTECNVDQDCGEGRQCTSN 161
DC +CVR C VC P H G CV V + G C+
Sbjct: 189 DCNDQGRCVRGRC--VCFPGYTGPSCSWPSCPGDCHGRGRCVQGVCVCRSGFSGDDCSVR 246
Query: 162 GCGRVCSPVQQEDVGICVM-------ECKV---DQDCGEGRRCTSNGCGRVCSPVQQKEA 311
C R CS + + G CV +C V +DC + RC + C VC+P +
Sbjct: 247 SCPRGCSQRGRCEDGRCVCNPGYSGEDCGVRSCPRDCSQRGRCENGRC--VCNPGYTGDD 304
Query: 312 C-EHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTEC---RVDQDCGEGRQCTSN 479
C C R C +C C VC P + D +C DCGEG +C
Sbjct: 305 CGVRSC--PRGCSQKGRCEDGRC--VCDPGYTGD------DCGSRTCPWDCGEGGRCVDG 354
Query: 480 GCGRVCSPAQQRE-----ACEHQCREDKDCGSGHQCVRKGCGHVCSPIPQVSIC-VTECN 641
C VC P E C CR + C G +C +C P C V C
Sbjct: 355 RC--VCWPGYAGEDCSTRTCPRDCRGPRGCEDG-EC-------ICDPGYSGDDCGVRSC- 403
Query: 642 VDQDCGAGRRCTSNGCGRVC-----SPPQGGGLCVNRCRGNWDCG----------AGEEC 776
DC RC C VC P G C CRG C +GE+C
Sbjct: 404 -PSDCNQRGRCEDGRC--VCWPGYSGPDCGARACPRDCRGRGRCENGVCVCHAGYSGEDC 460
Query: 777 IRKGCGRVCSPAQEPVVGICV-------DQCRRH---WECGPRMRCVSTGCGHICSPAQD 926
+ C C G CV C +C R RCV C +C+P
Sbjct: 461 GVRSCPGDCRRRGRCESGRCVCWPGYTGRDCGTRACPGDCRGRGRCVDGRC--VCNPGFA 518
Query: 927 QVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQ 1064
+ +CP +G G C + D G+ C C CQ
Sbjct: 519 GEDCGSRRCPGDCRGR-GRCGDGVCSCDVGYEGEDCGKRSCPRGCQ 563
Score = 82.4 bits (202), Expect = 8e-16
Identities = 115/406 (28%), Positives = 144/406 (35%), Gaps = 58/406 (14%)
Frame = +3
Query: 24 RDCGSGHQCVRKGCGHVCAPVHQVGIC-VTECNVDQDCGEGRQCTSNGCGRVCSPVQQED 200
RDC +C C VC P + C V C + C + +C C VC P D
Sbjct: 281 RDCSQRGRCENGRC--VCNPGYTGDDCGVRSC--PRGCSQKGRCEDGRC--VCDPGYTGD 334
Query: 201 VGICVMEC---KVDQDCGEGRRCTSNGCGRVCSPVQQKE-----ACEHQCREDRDCGSGH 356
+C DCGEG RC C VC P E C CR R C G
Sbjct: 335 ------DCGSRTCPWDCGEGGRCVDGRC--VCWPGYAGEDCSTRTCPRDCRGPRGCEDG- 385
Query: 357 QCVRKGCGHVCAPVHQVD---VGICVTECRVDQDCGEGR----------QCTSNGCGRVC 497
+C+ C P + D V C ++C C +GR C + C R C
Sbjct: 386 ECI-------CDPGYSGDDCGVRSCPSDCNQRGRCEDGRCVCWPGYSGPDCGARACPRDC 438
Query: 498 SPAQQREACE------HQCREDKDCGSGH---QCVRKG-CGH---VCSPIPQVSICVTEC 638
+ R CE H +DCG C R+G C VC P C T
Sbjct: 439 ---RGRGRCENGVCVCHAGYSGEDCGVRSCPGDCRRRGRCESGRCVCWPGYTGRDCGTRA 495
Query: 639 NVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNR-----CRGNWDCG----------AGEE 773
DC RC C VC+P G C +R CRG CG GE+
Sbjct: 496 -CPGDCRGRGRCVDGRC--VCNPGFAGEDCGSRRCPGDCRGRGRCGDGVCSCDVGYEGED 552
Query: 774 CIRKGCGRVCSPAQEPVVGICV-DQCRRHWECGPRMRCVSTGCGHICSPAQDQVEQRPGK 950
C ++ C R C + + G CV D +CG R C C+ Q V Q G
Sbjct: 553 CGKRSCPRGCQGRGQCLEGRCVCDDGYEGEDCGVRR------CPRDCN--QRGVCQ-DGV 603
Query: 951 CPVLPKGTIG------LCAEFCSGDDSCPSGQKCCSHG-CGHSCQT 1067
C +G G +C C C +G+ C G G SC T
Sbjct: 604 CTCW-EGFAGEDCGLRVCPSNCHRRGRCENGRCVCDSGYTGPSCAT 648
>ref|XP_002695670.1| PREDICTED: extracellular peptidase inhibitor-like [Bos taurus].
Length = 146
Score = 83.6 bits (205), Expect = 4e-16
Identities = 32/47 (68%), Positives = 38/47 (80%)
Frame = +3
Query: 933 EQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQTAV 1073
+Q G CP +PKGT+G+C E CSGDDSCP G KCCS+GCGH C+TAV
Sbjct: 30 QQELGFCPEVPKGTVGICVEMCSGDDSCPEGMKCCSNGCGHVCKTAV 76
>ref|XP_002702143.1| PREDICTED: mCG55370-like [Bos taurus].
Length = 93
Score = 83.6 bits (205), Expect = 4e-16
Identities = 32/47 (68%), Positives = 38/47 (80%)
Frame = +3
Query: 933 EQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQTAV 1073
+Q G CP +PKGT+G+C E CSGDDSCP G KCCS+GCGH C+TAV
Sbjct: 30 QQELGFCPEVPKGTVGICVEMCSGDDSCPEGMKCCSNGCGHVCKTAV 76
Score = 48.9 bits (115), Expect = 1e-05
Identities = 22/44 (50%), Positives = 25/44 (56%)
Frame = +3
Query: 387 CAPVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQRE 518
C V + VGICV C D C EG +C SNGCG VC A R+
Sbjct: 36 CPEVPKGTVGICVEMCSGDDSCPEGMKCCSNGCGHVCKTAVFRK 79
>ref|NP_001192207.1| extracellular peptidase inhibitor [Bos taurus].
Length = 93
Score = 79.7 bits (195), Expect = 5e-15
Identities = 33/54 (61%), Positives = 41/54 (75%)
Frame = +3
Query: 912 SPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQTAV 1073
SP + Q ++PG CP +PKGT+G+CAE CSGD SCP KCCS+GCGH C+ AV
Sbjct: 25 SPVKGQ--RKPGFCPEVPKGTVGICAELCSGDYSCPGRAKCCSNGCGHVCKAAV 76
>ref|XP_002692529.1| PREDICTED: WAP four-disulfide core domain 3 [Bos taurus].
Length = 197
Score = 73.2 bits (178), Expect(2) = 4e-13
Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Frame = +3
Query: 522 CEHQCREDKDCGSGHQCVRKGCGHVC-----------SPIPQVSICVTECNVDQDCGAGR 668
CE C D C GH+C GCGH C P V +C+ C VD++C AG
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 669 RCTSNGCGRVCSPP 710
+C +GCGR C PP
Sbjct: 170 KCCKSGCGRFCVPP 183
Score = 20.4 bits (41), Expect(2) = 4e-13
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +2
Query: 389 CPRPSSRCRYLCDG 430
CP C LCDG
Sbjct: 103 CPADPLPCEELCDG 116
Score = 68.9 bits (167), Expect = 9e-12
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Frame = +3
Query: 312 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECRVDQDCGEGR 464
CE C D C GH+C GCGH C + VG+C+ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 465 QCTSNGCGRVCSP 503
+C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 67.4 bits (163), Expect = 3e-11
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Frame = +3
Query: 3 EHQCREDRDCGSGHQCVRKGCGHVC-----------APVHQVGICVTECNVDQDCGEGRQ 149
E C D C GH+C GCGH C P VG+C+ C VD++C G +
Sbjct: 111 EELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGEK 170
Query: 150 CTSNGCGRVCSP 185
C +GCGR C P
Sbjct: 171 CCKSGCGRFCVP 182
Score = 63.9 bits (154), Expect = 3e-10
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Frame = +3
Query: 102 CVTECNVDQDCGEGRQCTSNGCGRVC---------SPVQQEDVGICVMECKVDQDCGEGR 254
C C+ D C +G +C S GCG C + VG+C++ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 255 RCTSNGCGRVCSP 293
+C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 63.2 bits (152), Expect = 5e-10
Identities = 31/81 (38%), Positives = 38/81 (46%)
Frame = +3
Query: 834 CVDQCRRHWECGPRMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDS 1013
C + C C +C STGCGH C D G CP K +GLC C D++
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFG--DIKGGWDGDCP---KALVGLCIVNCMVDEN 164
Query: 1014 CPSGQKCCSHGCGHSCQTAVP 1076
C +G+KCC GCG C P
Sbjct: 165 CQAGEKCCKSGCGRFCVPPSP 185
Score = 59.7 bits (143), Expect = 6e-09
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Frame = +3
Query: 603 PIPQVSICVTECNVDQDCGAGRRCTSNGCGRVC-SPPQGG----------GLCVNRCRGN 749
P+P C C+ D C G +C S GCG C +GG GLC+ C +
Sbjct: 107 PLP----CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVD 162
Query: 750 WDCGAGEECIRKGCGRVCSP 809
+C AGE+C + GCGR C P
Sbjct: 163 ENCQAGEKCCKSGCGRFCVP 182
Score = 54.7 bits (130), Expect = 2e-07
Identities = 22/39 (56%), Positives = 24/39 (61%)
Frame = +3
Query: 945 GKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSC 1061
G+CP P C E C GD SCP G KCCS GCGH+C
Sbjct: 101 GECPADPLP----CEELCDGDTSCPQGHKCCSTGCGHAC 135
Score = 51.6 bits (122), Expect = 2e-06
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Frame = +3
Query: 420 CVTECRVDQDCGEGRQCTSNGCGRVC-----------SPAQQREACEHQCREDKDCGSGH 566
C C D C +G +C S GCG C P C C D++C +G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 567 QCVRKGCGHVCSPIPQVSICVTECNVD 647
+C + GCG C P ++ E ++D
Sbjct: 170 KCCKSGCGRFCVPPSPITPAGPEPHLD 196
Score = 48.9 bits (115), Expect = 1e-05
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Frame = +3
Query: 726 CVNRCRGNWDCGAGEECIRKGCGRVC---------SPAQEPVVGICVDQCRRHWECGPRM 878
C C G+ C G +C GCG C + +VG+C+ C C
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 879 RCVSTGCGHICSP 917
+C +GCG C P
Sbjct: 170 KCCKSGCGRFCVP 182
>ref|XP_001789331.1| PREDICTED: WAP four-disulfide core domain 3 [Bos taurus].
Length = 197
Score = 73.2 bits (178), Expect(2) = 4e-13
Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Frame = +3
Query: 522 CEHQCREDKDCGSGHQCVRKGCGHVC-----------SPIPQVSICVTECNVDQDCGAGR 668
CE C D C GH+C GCGH C P V +C+ C VD++C AG
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 669 RCTSNGCGRVCSPP 710
+C +GCGR C PP
Sbjct: 170 KCCKSGCGRFCVPP 183
Score = 20.4 bits (41), Expect(2) = 4e-13
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +2
Query: 389 CPRPSSRCRYLCDG 430
CP C LCDG
Sbjct: 103 CPADPLPCEELCDG 116
Score = 68.9 bits (167), Expect = 9e-12
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Frame = +3
Query: 312 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECRVDQDCGEGR 464
CE C D C GH+C GCGH C + VG+C+ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 465 QCTSNGCGRVCSP 503
+C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 67.4 bits (163), Expect = 3e-11
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Frame = +3
Query: 3 EHQCREDRDCGSGHQCVRKGCGHVC-----------APVHQVGICVTECNVDQDCGEGRQ 149
E C D C GH+C GCGH C P VG+C+ C VD++C G +
Sbjct: 111 EELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGEK 170
Query: 150 CTSNGCGRVCSP 185
C +GCGR C P
Sbjct: 171 CCKSGCGRFCVP 182
Score = 63.9 bits (154), Expect = 3e-10
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Frame = +3
Query: 102 CVTECNVDQDCGEGRQCTSNGCGRVC---------SPVQQEDVGICVMECKVDQDCGEGR 254
C C+ D C +G +C S GCG C + VG+C++ C VD++C G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 255 RCTSNGCGRVCSP 293
+C +GCGR C P
Sbjct: 170 KCCKSGCGRFCVP 182
Score = 63.2 bits (152), Expect = 5e-10
Identities = 31/81 (38%), Positives = 38/81 (46%)
Frame = +3
Query: 834 CVDQCRRHWECGPRMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDS 1013
C + C C +C STGCGH C D G CP K +GLC C D++
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFG--DIKGGWDGDCP---KALVGLCIVNCMVDEN 164
Query: 1014 CPSGQKCCSHGCGHSCQTAVP 1076
C +G+KCC GCG C P
Sbjct: 165 CQAGEKCCKSGCGRFCVPPSP 185
Score = 59.7 bits (143), Expect = 6e-09
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Frame = +3
Query: 603 PIPQVSICVTECNVDQDCGAGRRCTSNGCGRVC-SPPQGG----------GLCVNRCRGN 749
P+P C C+ D C G +C S GCG C +GG GLC+ C +
Sbjct: 107 PLP----CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVD 162
Query: 750 WDCGAGEECIRKGCGRVCSP 809
+C AGE+C + GCGR C P
Sbjct: 163 ENCQAGEKCCKSGCGRFCVP 182
Score = 54.7 bits (130), Expect = 2e-07
Identities = 22/39 (56%), Positives = 24/39 (61%)
Frame = +3
Query: 945 GKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSC 1061
G+CP P C E C GD SCP G KCCS GCGH+C
Sbjct: 101 GECPADPLP----CEELCDGDTSCPQGHKCCSTGCGHAC 135
Score = 51.6 bits (122), Expect = 2e-06
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Frame = +3
Query: 420 CVTECRVDQDCGEGRQCTSNGCGRVC-----------SPAQQREACEHQCREDKDCGSGH 566
C C D C +G +C S GCG C P C C D++C +G
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 567 QCVRKGCGHVCSPIPQVSICVTECNVD 647
+C + GCG C P ++ E ++D
Sbjct: 170 KCCKSGCGRFCVPPSPITPAGPEPHLD 196
Score = 48.9 bits (115), Expect = 1e-05
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Frame = +3
Query: 726 CVNRCRGNWDCGAGEECIRKGCGRVC---------SPAQEPVVGICVDQCRRHWECGPRM 878
C C G+ C G +C GCG C + +VG+C+ C C
Sbjct: 110 CEELCDGDTSCPQGHKCCSTGCGHACFGDIKGGWDGDCPKALVGLCIVNCMVDENCQAGE 169
Query: 879 RCVSTGCGHICSP 917
+C +GCG C P
Sbjct: 170 KCCKSGCGRFCVP 182
>ref|NP_001071494.1| tenascin C [Bos taurus].
Length = 1746
Score = 72.0 bits (175), Expect = 1e-12
Identities = 105/407 (25%), Positives = 134/407 (32%), Gaps = 77/407 (18%)
Frame = +3
Query: 57 KGCGHVCAPVHQVGICVT-----ECNVDQDCGEGRQC------TSNGCGRVCSPVQQEDV 203
+GCG VC P + C C++ C +G QC T CG++ P D
Sbjct: 170 EGCGCVCEPGWKGPNCSEPECPGNCHLHGQCLDG-QCVCHEGFTGEDCGQLACPSDCNDQ 228
Query: 204 GICVMECKVDQDCGEGRRCTSNGCGRVCSP----------VQQKEACEHQCRED---RDC 344
G CV V + G C+ C CS V Q+ CRE +C
Sbjct: 229 GKCVDGACVCFEGYSGLDCSQETCPVPCSEEHGRCVDGRCVCQEGFAGEDCREPLCLHNC 288
Query: 345 GSGHQCVRK-----------GCGHVCAPVHQVDVGICVT-ECRVDQDCGEGRQCTSNGCG 488
+CV CG + P D G C+ C C EG T CG
Sbjct: 289 HGRGRCVENECVCDEGFTGDDCGELVCPNDCFDRGRCLNGTC----SCDEG--FTGEDCG 342
Query: 489 RVCSPAQQREACEHQCREDKDCGSGHQCVRKGCGH-VCSPIPQVSICVTECN-----VDQ 650
++ AC H C C G QCV C P C ++C+ VD
Sbjct: 343 QL--------ACPHACHGHGRCDEG-QCV---CDEGFAGPDCSERRCPSDCHERGRCVDG 390
Query: 651 DCGAGRRCTSNGCGRVCSPP--QGGGLCVNRCRGNWDCG---AGEECIRKGCGRVCSPAQ 815
C T CG + P G G CVN G C GE+C ++ C C
Sbjct: 391 RCECNDGFTGADCGELQCPRDCSGHGRCVN---GQCVCDEGYTGEDCGQRQCPSDCHGRG 447
Query: 816 EPVVGICV-------DQCRR---HWECGPRMRCVSTGCGHICSPAQDQVEQRPGKCP--- 956
V G+C D C +C RCV+ C +C A + R +CP
Sbjct: 448 RCVDGLCECQPGFQGDDCGEMSCPHDCHQHGRCVNGMC--VCDDAYTGEDCRELRCPGDC 505
Query: 957 -----------VLPKGTIG------LCAEFCSGDDSCPSGQKCCSHG 1046
V G G C C G C GQ C G
Sbjct: 506 SQRGRCVDGRCVCEDGFAGPDCADLACPGNCHGRGRCVDGQCVCLEG 552
Score = 60.1 bits (144), Expect = 4e-09
Identities = 95/351 (27%), Positives = 117/351 (33%), Gaps = 83/351 (23%)
Frame = +3
Query: 36 SGHQCVRKGCGHVCAPVHQVGICV-TECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGIC 212
+G C C H C H G CV EC C EG T + CG + P D G C
Sbjct: 275 AGEDCREPLCLHNC---HGRGRCVENECV----CDEG--FTGDDCGELVCPNDCFDRGRC 325
Query: 213 VM-ECKVDQ-----DCGE---------GRRCTSNGCGRVCS-----PVQQKEACEHQCRE 332
+ C D+ DCG+ RC C VC P + C C E
Sbjct: 326 LNGTCSCDEGFTGEDCGQLACPHACHGHGRCDEGQC--VCDEGFAGPDCSERRCPSDCHE 383
Query: 333 DRDCGSGHQCVRKG-----CGHVCAPVHQVDVGICVT-ECRVDQ-----DCGEGRQCTSN 479
C G G CG + P G CV +C D+ DCG+ RQC S+
Sbjct: 384 RGRCVDGRCECNDGFTGADCGELQCPRDCSGHGRCVNGQCVCDEGYTGEDCGQ-RQCPSD 442
Query: 480 GCGR--------VCSPAQQRE-----ACEHQCREDKDCGSG----------HQCVRKGCG 590
GR C P Q + +C H C + C +G C C
Sbjct: 443 CHGRGRCVDGLCECQPGFQGDDCGEMSCPHDCHQHGRCVNGMCVCDDAYTGEDCRELRCP 502
Query: 591 HVCSPIPQVSICVTECNVDQDCGAGRRCTSNGC-------GR------VCSPPQGGGLCV 731
CS Q CV V +D AG C C GR VC G C
Sbjct: 503 GDCS---QRGRCVDGRCVCEDGFAGPDCADLACPGNCHGRGRCVDGQCVCLEGFTGPDCA 559
Query: 732 NR-----CRGNWDCGAGE----------ECIRKGCGRVCSPAQEPVVGICV 839
R C G C G+ +C ++ C CS + V G CV
Sbjct: 560 QRRCPGDCHGQGRCVDGQCVCHEGFTGPDCAQRSCPNDCSNWGQCVSGRCV 610
Score = 59.3 bits (142), Expect = 7e-09
Identities = 88/371 (23%), Positives = 125/371 (33%), Gaps = 35/371 (9%)
Frame = +3
Query: 54 RKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICVMECKVD 233
R+ CG AP + + E + QCTS G C+ +
Sbjct: 108 RRACGCAAAPDVKELLSRLEELENLVSSLREQCTSGA-------------GCCLQSAEGR 154
Query: 234 QD----CGEGRRCTSNGCGRVCSPVQQKEAC-EHQCREDRDCGSGHQCVRKGCGHVCAPV 398
D C ++ GCG VC P + C E +C +C QC+ C VC
Sbjct: 155 VDTRPFCSGRGNFSTEGCGCVCEPGWKGPNCSEPEC--PGNCHLHGQCLDGQC--VC--- 207
Query: 399 HQVDVGICVTECRVDQDCGEGRQCTSNGC-------GRVCSPAQQREACEHQCREDKD-C 554
H+ G + DC + +C C G CS +E C C E+ C
Sbjct: 208 HEGFTGEDCGQLACPSDCNDQGKCVDGACVCFEGYSGLDCS----QETCPVPCSEEHGRC 263
Query: 555 GSGHQCVRKG-CGHVCSPIPQVSICVTECN-----VDQDCGAGRRCTSNGCGRVCSPPQ- 713
G ++G G C + +C+ C+ V+ +C T + CG + P
Sbjct: 264 VDGRCVCQEGFAGEDC----REPLCLHNCHGRGRCVENECVCDEGFTGDDCGELVCPNDC 319
Query: 714 -GGGLCVNRCRGNWDCG---AGEECIRKGCGRVCSPAQEPVVGICV----------DQCR 851
G C+N G C GE+C + C C G CV + R
Sbjct: 320 FDRGRCLN---GTCSCDEGFTGEDCGQLACPHACHGHGRCDEGQCVCDEGFAGPDCSERR 376
Query: 852 RHWECGPRMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQK 1031
+C R RCV C C+ + +CP CSG C +GQ
Sbjct: 377 CPSDCHERGRCVDGRCE--CNDGFTGADCGELQCP-----------RDCSGHGRCVNGQC 423
Query: 1032 CCSHG-CGHSC 1061
C G G C
Sbjct: 424 VCDEGYTGEDC 434
>ref|NP_001192645.1| NFX1-type zinc finger-containing protein 1 [Bos taurus].
Length = 1918
Score = 64.7 bits (156), Expect = 2e-10
Identities = 98/386 (25%), Positives = 129/386 (33%), Gaps = 21/386 (5%)
Frame = +3
Query: 54 RKGCGHVCAPV-------HQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGIC 212
R GCGHVC H+ C+ C C +G +C C + C P Q
Sbjct: 1297 RLGCGHVCTRACHPYDSSHKEFQCMKPCQ-KVICQDGHRCPLV-CFQECQPCQ------- 1347
Query: 213 VMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGHQCVRKGCGHVCA 392
V K CG + CS + C+ C + CG H C CG C
Sbjct: 1348 VKVPKTILRCGHKQMVP-------CSVPESDFCCQEPCPKVLKCG--HTCSHP-CGEDC- 1396
Query: 393 PVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCS-----PAQQREACEHQCREDKDCG 557
V +C V CG +Q CG V P Q C +C DCG
Sbjct: 1397 ------VWLCSEMVTVKLKCGHRQQMK---CGNVEDLKHGLPVQ----CTTKCGSILDCG 1443
Query: 558 -----SGHQCVRKGCGHVCS-PIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPPQGG 719
S H C C P ++ IC +C C C P Q
Sbjct: 1444 HPCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQ-------------EPCTGECPPCQR- 1489
Query: 720 GLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGC 899
+C NRC +C +K CG +C+P EP C+ +C RH++ C
Sbjct: 1490 -ICQNRC-------VHSQC-KKKCGELCTPCMEP----CIWRC-RHYQ-----------C 1524
Query: 900 GHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQTAVPD 1079
+CS D RP C V P + C C G C C C+ +
Sbjct: 1525 TRLCSEPCD----RP-PCYV-PCTKLLACGHPCIG---------LCGEPCPKKCRVCHQE 1569
Query: 1080 EKT---FPSRLDD**TLASFHNCSHM 1148
E T F S + +CSH+
Sbjct: 1570 EVTQIFFGSEDEPDARFVQLEDCSHI 1595
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,255,167
Number of extensions: 2389748
Number of successful extensions: 10552
Number of sequences better than 1.0e-05: 74
Number of HSP's gapped: 9507
Number of HSP's successfully gapped: 136
Length of query: 440
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 335
Effective length of database: 14,207,134
Effective search space: 4759389890
Effective search space used: 4759389890
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012525
(1320 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116676.1| tenascin-X [Sus scrofa]. 76 5e-14
Alignment gi|XP_003356178.1| PREDICTED: multiple epidermal growth factor-... 71 1e-12
Alignment gi|XP_003126347.2| PREDICTED: prolow-density lipoprotein recept... 71 2e-12
Alignment gi|NP_999395.1| tenascin precursor [Sus scrofa]. 67 2e-11
Alignment gi|XP_003129006.2| PREDICTED: NF-X1-type zinc finger protein NF... 66 5e-11
Alignment gi|XP_003362090.1| PREDICTED: NFX1-type zinc finger-containing ... 65 6e-11
Alignment gi|XP_001928820.2| PREDICTED: WAP four-disulfide core domain pr... 63 3e-10
Alignment gi|NP_001186819.1| very low-density lipoprotein receptor [Sus s... 59 6e-09
Alignment gi|NP_999112.1| WAP four-disulfide core domain protein 2 precur... 59 8e-09
Alignment gi|XP_003354310.1| PREDICTED: multiple epidermal growth factor-... 57 2e-08
>ref|NP_001116676.1| tenascin-X [Sus scrofa].
Length = 4137
Score = 75.9 bits (185), Expect = 5e-14
Identities = 107/401 (26%), Positives = 133/401 (33%), Gaps = 60/401 (14%)
Frame = +3
Query: 27 DCGSGHQCVRKGCGHVCAP---------------VHQVGICVTECNVDQDCGEGRQCTSN 161
DC +C+R C +C P H G CV V + G C+
Sbjct: 183 DCNDQGRCIRGRC--LCFPGYTGPSCSWPSCPGDCHGRGRCVKGVCVCRAGFSGDDCSLR 240
Query: 162 GCGRVCSPVQQEDVGICVM-------ECKV---DQDCGEGRRCTSNGCGRVCSPVQQKEA 311
C R CS + + G CV +C V +DC + RC C VC+P E
Sbjct: 241 SCPRGCSQRGRCEDGRCVCDSGYTGEDCGVRSCPRDCSQRGRCQDGRC--VCNPGYTGED 298
Query: 312 C-EHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTEC---RVDQDCGEGRQCTSN 479
C C R C +C C VC P G +C DCGEG +C
Sbjct: 299 CGVRSC--PRGCSQKGRCEDGRC--VCDP------GYTGEDCGSRSCPWDCGEGGRCVDG 348
Query: 480 GCGRVCSPAQQRE-----ACEHQCREDKDCGSGHQCVRKG-CGHVCSPIPQVSICVTECN 641
C VC P E C CR C G G G C V C +CN
Sbjct: 349 RC--VCWPGYAGEDCSTRTCPRDCRGRGRCEDGECICNAGYSGDDCG----VRSCPGDCN 402
Query: 642 VDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNRCRGNWDCG----------AGEECIRKGC 791
C GR G P G C CRG C +GE+C + C
Sbjct: 403 QRGRCEDGRCVCWPG---YSGPDCGARACPRDCRGRGRCENGVCVCNAGYSGEDCGVRSC 459
Query: 792 GRVCSPAQEPVVGICV-------DQCRRH---WECGPRMRCVSTGCGHICSP---AQDQV 932
C G CV C +C R RCV C +C+P +D
Sbjct: 460 PGDCLGRGRCENGRCVCWPGYTGRDCGTRACPGDCRGRGRCVDGRC--VCNPGFTGEDCG 517
Query: 933 EQR-PGKCPVLPKGTIGLCAEFCS-GDDSCPSGQKCCSHGC 1049
R PG C + G+C C G + G + C GC
Sbjct: 518 SHRCPGDCRGRGRCEDGVC--LCDVGYEGKDCGVRSCPGGC 556
Score = 67.8 bits (164), Expect = 1e-11
Identities = 105/377 (27%), Positives = 123/377 (32%), Gaps = 30/377 (7%)
Frame = +3
Query: 36 SGHQCVRKGCGHVCAPVHQV--GICVTECNVD---QDCGEGRQCTSNGCGR--------V 176
SG C + C C + G+CV CN +DCG R C + GR V
Sbjct: 419 SGPDCGARACPRDCRGRGRCENGVCV--CNAGYSGEDCGV-RSCPGDCLGRGRCENGRCV 475
Query: 177 CSPVQQEDVGICVMECKVDQ---DCGEGRRCTSNGCGRVCSPVQQKEAC-EHQCREDRDC 344
C P G +C DC RC C VC+P E C H+C DC
Sbjct: 476 CWP------GYTGRDCGTRACPGDCRGRGRCVDGRC--VCNPGFTGEDCGSHRC--PGDC 525
Query: 345 GSGHQCVR-----------KGCGHVCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGCGR 491
+C K CG P G CV V +D EG C C R
Sbjct: 526 RGRGRCEDGVCLCDVGYEGKDCGVRSCPGGCRGRGQCVEGRCVCEDGYEGEDCAIRRCPR 585
Query: 492 VCSPAQQREACEHQCREDKDCGSGHQCVRKGCGHVCSPIPQVSICVTECNVDQDCGAGR- 668
CS QR C D C C G CS + C + C+ C GR
Sbjct: 586 DCS---QRGVC-----RDGVC----TCWEGYAGEDCS----LRTCPSNCHRRGLCEDGRC 629
Query: 669 RCTSNGCGRVCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQC 848
C S G C+ C CRG C G G +EP C
Sbjct: 630 VCESGYTGPSCAT----RTCPADCRGRGRCVQGVCLCHAGYSGEDCGQEEPPASACPG-- 683
Query: 849 RRHWECGPRMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQ 1028
CGPR C + C +C VE G P I C E C G C G+
Sbjct: 684 ----GCGPRELCRAGQC--VC------VEGFRG-----PDCAIQTCPEDCRGRGECHEGR 726
Query: 1029 KCCSHG-CGHSCQTAVP 1076
C G G C VP
Sbjct: 727 CVCQDGYAGEDCGEEVP 743
Score = 60.5 bits (145), Expect = 2e-09
Identities = 87/345 (25%), Positives = 113/345 (32%), Gaps = 17/345 (4%)
Frame = +3
Query: 78 APVHQVGICVTECNVDQDCGEGR-QCTSNGCGRVCS----PVQQEDVGICVMECKVDQDC 242
+P C +CN C GR C G CS P G CV V +
Sbjct: 172 SPPSDARSCPDDCNDQGRCIRGRCLCFPGYTGPSCSWPSCPGDCHGRGRCVKGVCVCRAG 231
Query: 243 GEGRRCTSNGCGRVCSPVQQKEACEH-QCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGI 419
G C+ C R CS Q+ CE +C C SG+ + CG P
Sbjct: 232 FSGDDCSLRSCPRGCS---QRGRCEDGRCV----CDSGY--TGEDCGVRSCP-------- 274
Query: 420 CVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACE-HQCREDKDCGSGHQCVRKGCGHV 596
+DC + +C C VC+P E C C + C +C C V
Sbjct: 275 --------RDCSQRGRCQDGRC--VCNPGYTGEDCGVRSC--PRGCSQKGRCEDGRC--V 320
Query: 597 CSPIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNRCRGNWDCGAGEEC 776
C P C + + DCG G RC C VC W AGE+C
Sbjct: 321 CDPGYTGEDCGSR-SCPWDCGEGGRCVDGRC--VC----------------WPGYAGEDC 361
Query: 777 IRKGCGRVCSPAQEPVVGICV-------DQCRRH---WECGPRMRCVSTGCGHICSPAQD 926
+ C R C G C+ D C +C R RC C +C P
Sbjct: 362 STRTCPRDCRGRGRCEDGECICNAGYSGDDCGVRSCPGDCNQRGRCEDGRC--VCWPGYS 419
Query: 927 QVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSC 1061
+ CP +G G C ++ SG+ C C C
Sbjct: 420 GPDCGARACPRDCRGR-GRCENGVCVCNAGYSGEDCGVRSCPGDC 463
>ref|XP_003356178.1| PREDICTED: multiple epidermal growth factor-like domains protein
6-like [Sus scrofa].
Length = 1982
Score = 71.2 bits (173), Expect = 1e-12
Identities = 101/409 (24%), Positives = 136/409 (33%), Gaps = 58/409 (14%)
Frame = +3
Query: 12 CREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTEC---NVDQDCGEGRQCTSNGCGRVCS 182
C + C G C C P C C + CG+ QC G + C
Sbjct: 1569 CAQHCQCPPGAACHHVSGECHCPPGFTGPGCEQACPPGTFGESCGQKCQCP--GENQACH 1626
Query: 183 PVQQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGHQC 362
P G CV C G +GC + C P + CE C C +G C
Sbjct: 1627 PAS----GACV--------CAAGYH--GSGCRQRCPPGRFGPGCEQLCA----CLNGGSC 1668
Query: 363 -------------VRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSP 503
+ CG C P + +G C CR CG+G C C P
Sbjct: 1669 DPATGACRCPAGFLGTDCGLAC-PHGRFGLG-CAHVCR----CGQGAACDPVTGTCTCPP 1722
Query: 504 AQQREACEHQCREDK---DCGSGHQCVRKGCGHVCSPIPQVSICVTECNVDQDCGAGR-- 668
+ CEH C +++ +C C G H + + T + + C AGR
Sbjct: 1723 GRTGVHCEHGCPQNRFGVNCEGTCSCRNGGLCHATNGSCSCGLGWTGPHCELACPAGRYG 1782
Query: 669 -------RCTSNGC---------------GRVCSPPQGGGLCVNRCRGNWDCGAGEEC-- 776
C + G G+ C P G CRG +C G C
Sbjct: 1783 AACHLECSCRNQGTCEPASGACHCGPGFYGQACEHPCPSGFHGAGCRGTCECQHGAPCDP 1842
Query: 777 IRKGC-------GRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHICSPAQDQVE 935
+ C G+ C EP G + CR+ +CG + C S G +C P +
Sbjct: 1843 VSGRCLCPAGFHGKFCERGCEP--GSFGEGCRQRCDCGDGVPCDSVTGGCLCPPGRTGTT 1900
Query: 936 QRPGKCPVLPKGTIGL-CAEFCS---GDDSCP-SGQKCCSHG-CGHSCQ 1064
G +G G CA CS G D P SGQ C G G +C+
Sbjct: 1901 CDLG----CRRGFFGPGCALRCSCGGGADCDPVSGQCLCVDGYTGPTCR 1945
Score = 61.2 bits (147), Expect = 1e-09
Identities = 91/358 (25%), Positives = 121/358 (33%), Gaps = 23/358 (6%)
Frame = +3
Query: 60 GCGHVCAPVHQVGICVTECNVDQDCGE-GRQCTSNGCGRVCSPVQQEDVGICVMECKVDQ 236
GC C C D GE G++C + G+ C Q+ G + C
Sbjct: 1180 GCLQTCT-------CPPGVACDPISGECGKECPAGYRGKDCG--QECPAGTFGLNCSGSC 1230
Query: 237 DCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGHQCVRKGCGH--VCAPVHQVD 410
C G C +C P + + C +C E R G G Q + C H C P +
Sbjct: 1231 SC-RGAPCDPVTGQCLCPPGRTGDDCGAECPEGR-WGLGCQEICPACEHGATCEP----E 1284
Query: 411 VGICV-----TECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCREDKDCGSGHQCV 575
G C+ T R C +G GCG+ C CEH D G+ C
Sbjct: 1285 TGACLCRPGFTGSRCQDGCPQGHY--GPGCGQQCQ-------CEHGAACDHVSGAC-TCP 1334
Query: 576 RKGCGHVCSPIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNRCRGNWD 755
G C +C+ +C AG C + +C P + G C C +
Sbjct: 1335 AGWRGTFCERACPAGFFGVDCHHACNCSAGASCDAVSGSCLCPPGRQGPRCSQTCPAH-- 1392
Query: 756 CGAGEECIRKGCGRVCSPAQ----EPVVGICVDQCRRHWECGPRMRCVSTGCGHICSPAQ 923
C +VCS + +PV G QCR CGP C C PA
Sbjct: 1393 ------TYGHNCSQVCSCSNGASCDPVHG----QCR----CGPGW--TGPACLQAC-PAG 1435
Query: 924 DQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSG------QKCCSHG-----CGHSCQ 1064
+ C GT + SG SCP G +K C G C HSC+
Sbjct: 1436 LYGDNCQHSCLCQNGGT----CDPVSGHCSCPEGWAGLACEKECLPGLFGASCQHSCR 1489
Score = 61.2 bits (147), Expect = 1e-09
Identities = 86/350 (24%), Positives = 111/350 (31%), Gaps = 59/350 (16%)
Frame = +3
Query: 30 CGSGHQCVRKGCGHVCAP------VHQVGICVTECNVDQDCGEGRQCTSN----GCGRVC 179
C +G+ GC C P Q+ C+ + D G R C + CG C
Sbjct: 1634 CAAGYH--GSGCRQRCPPGRFGPGCEQLCACLNGGSCDPATGACR-CPAGFLGTDCGLAC 1690
Query: 180 SPVQQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDR------- 338
P + +G C C+ CG+G C C P + CEH C ++R
Sbjct: 1691 -PHGRFGLG-CAHVCR----CGQGAACDPVTGTCTCPPGRTGVHCEHGCPQNRFGVNCEG 1744
Query: 339 --DCGSGHQCVRKG----CGHVCAPVH---QVDVGICVTECRVDQDCGEGRQCTSNGCGR 491
C +G C CG H G C ++ C C
Sbjct: 1745 TCSCRNGGLCHATNGSCSCGLGWTGPHCELACPAGRYGAACHLECSCRNQGTCEPASGAC 1804
Query: 492 VCSPAQQREACEHQC---------REDKDCGSGHQCVR-------------KGCGHVCSP 605
C P +ACEH C R +C G C K C C P
Sbjct: 1805 HCGPGFYGQACEHPCPSGFHGAGCRGTCECQHGAPCDPVSGRCLCPAGFHGKFCERGCEP 1864
Query: 606 IPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNRCRGNW---------DC 758
C C DCG G C S G +C P + G C CR + C
Sbjct: 1865 GSFGEGCRQRC----DCGDGVPCDSVTGGCLCPPGRTGTTCDLGCRRGFFGPGCALRCSC 1920
Query: 759 GAGEECIRKGCGRVCSPAQEPVVG--ICVDQCRRHWECGPRMRCVSTGCG 902
G G +C +PV G +CVD GP R +GCG
Sbjct: 1921 GGGADC-------------DPVSGQCLCVD-----GYTGPTCRQGESGCG 1952
Score = 51.2 bits (121), Expect = 1e-06
Identities = 84/350 (24%), Positives = 114/350 (32%), Gaps = 53/350 (15%)
Frame = +3
Query: 159 NGCGRVCSPVQQEDVGICVMECKVDQDCGEG---RRCT-------SNGCGRVCSPVQQKE 308
+GC R + ++ VG V+E + G R C + GC C
Sbjct: 606 SGCARAPAALEGLQVGRQVLEASLPSPARHGPGARGCDVDECQVHNGGCQHRCVNTPGSY 665
Query: 309 ACEHQCR-------EDRDCGSGHQCV--RKGCGHVCAPV----HQVDVGICVTECRVDQD 449
CE C+ + R C + H C GC H C + H+ C E ++ +D
Sbjct: 666 LCE--CKPGFRLHADGRTCLAIHSCTVGNGGCQHHCIQLTVSQHRCQ---CRPEFQLQED 720
Query: 450 ---CGEGRQCTSN--GCGRVCSPAQQREACE----------HQCREDKD-CGSGHQCVRK 581
C CT GC C + R CE H+ ED D C +G
Sbjct: 721 GKRCVRRNPCTDRNAGCMHTCRLLRGRAHCECHAGYRLAADHKACEDVDECATG----LA 776
Query: 582 GCGHVCSPIPQVSICVTECNVDQDCGA-GRRC-------------TSNGCGRVCSPPQGG 719
C H C CV CN + GA GR+C + GC CS G
Sbjct: 777 QCAHSCLNTQGSFKCV--CNAGYELGADGRQCYRIEMEIVNSCEAANGGCSHGCSHSSEG 834
Query: 720 GLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGC 899
+C C ++ G + K C V A P C Q C ++
Sbjct: 835 PICT--CPHGYELGEDQ----KTCIDVDDCADSP----CCQQV-----------CTNSPG 873
Query: 900 GHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGC 1049
G+ CS C + + C C D C SG C H C
Sbjct: 874 GYECS------------CYAGYRLSTDGCG--CEDVDECASGHGGCEHHC 909
Score = 50.1 bits (118), Expect = 3e-06
Identities = 71/274 (25%), Positives = 87/274 (31%), Gaps = 45/274 (16%)
Frame = +3
Query: 6 HQCREDRDCGSGHQCV-----------RKG--CGHVCAPVHQVGICVTECNVDQDCGEGR 146
H CR CG G C R G C H C P ++ G+ C C G
Sbjct: 1701 HVCR----CGQGAACDPVTGTCTCPPGRTGVHCEHGC-PQNRFGV---NCEGTCSCRNGG 1752
Query: 147 QC-TSNG---CGRVCSPVQQE---DVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQK 305
C +NG CG + E G C ++ C C C P
Sbjct: 1753 LCHATNGSCSCGLGWTGPHCELACPAGRYGAACHLECSCRNQGTCEPASGACHCGPGFYG 1812
Query: 306 EACEHQC---------REDRDCGSGHQCVR-------------KGCGHVCAPVHQVDVGI 419
+ACEH C R +C G C K C C P G
Sbjct: 1813 QACEHPCPSGFHGAGCRGTCECQHGAPCDPVSGRCLCPAGFHGKFCERGCEP------GS 1866
Query: 420 CVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCRE---DKDCGSGHQCVRKGCG 590
CR DCG+G C S G +C P + C+ CR C C G G
Sbjct: 1867 FGEGCRQRCDCGDGVPCDSVTGGCLCPPGRTGTTCDLGCRRGFFGPGCALRCSC---GGG 1923
Query: 591 HVCSPIPQVSICVTECNVDQDCGAGRRCTSNGCG 692
C P+ +C VD G R +GCG
Sbjct: 1924 ADCDPVSGQCLC-----VDGYTGPTCRQGESGCG 1952
>ref|XP_003126347.2| PREDICTED: prolow-density lipoprotein receptor-related protein 1-like
[Sus scrofa].
Length = 1598
Score = 70.9 bits (172), Expect = 2e-12
Identities = 98/407 (24%), Positives = 139/407 (34%), Gaps = 60/407 (14%)
Frame = +3
Query: 9 QCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTE--------CNVDQDCGEGRQ----C 152
+C +CG G + C V +Q +T+ C+ D DC +G C
Sbjct: 486 RCNGQDNCGDGED--ERDCPEVTCAPNQFQCSITKRCIPRVWVCDRDNDCVDGSDEPANC 543
Query: 153 TSNGCGRVCSPVQQEDVGICV---MECKVDQDCGEGRRCTSNGCG-RVCSPVQ---QKEA 311
T CG + +D G C+ +C + DCG+G C R C P Q +
Sbjct: 544 TQMTCG--VDEFRCKDSGRCIPARWKCDGEDDCGDGSDEPKEECDERTCEPYQFRCKNNR 601
Query: 312 C---EHQCREDRDCGSG---HQCVRKGCGHV---CAPVHQVDVGICVT---ECRVDQDCG 455
C QC D DCG C + C CA G C+ +C D DC
Sbjct: 602 CVPGRWQCDYDNDCGDNSDEESCTPRPCSESEFSCAN------GRCIAGRWKCDGDHDCA 655
Query: 456 EGRQCTSNGCGRVCSPAQQREACEH------QCREDKDCGSGHQCVRKGCGHVCSPIPQV 617
+G C C Q + H +C D DC G G P+ +
Sbjct: 656 DGSD--EKDCTPRCDMDQFQCKSGHCIPLRWRCDADADCMDGSDEEACSTGVRTCPLDEF 713
Query: 618 ----SIC---VTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVN---------RCRGN 749
++C +C+ + DCG C R PP C N +C G
Sbjct: 714 QCNNTLCKPLAWKCDGEDDCGDNSDENPEECARFVCPPNRPFRCKNDRVCLWIGRQCDGT 773
Query: 750 WDCGAGEECIRKGCGRVCSP--AQEPVVGICVDQCRRHWECGPRMRCVSTG--CGHI--C 911
+CG G + C P AQ P C D ++ + C RC+S+ C C
Sbjct: 774 DNCGDGTD------EEDCEPPTAQSP---HCKD--KKEFLC-RNQRCLSSSLRCNMFDDC 821
Query: 912 SPAQDQVEQRPGKCPVLPKGT-IGLCAEFCSGDDSCPSGQKCCSHGC 1049
D+ + C + PK T A C + C +K C
Sbjct: 822 GDGSDEED-----CSIDPKLTSCATNASICGDEARCVRTEKAAYCAC 863
>ref|NP_999395.1| tenascin precursor [Sus scrofa].
Length = 1746
Score = 67.0 bits (162), Expect = 2e-11
Identities = 101/394 (25%), Positives = 134/394 (34%), Gaps = 59/394 (14%)
Frame = +3
Query: 57 KGCGHVCAPVHQ-----VGICVTECNVDQDCGEGRQCTSN------GCGRVCSPVQQEDV 203
+GCG VC P + C + C++ C +G QC N C ++ P D
Sbjct: 170 EGCGCVCEPGWKGPNCSEPECPSNCHLRGQCVDG-QCVCNEGFTGEDCSQLACPSDCNDQ 228
Query: 204 GICVMECKVDQDCGEGRRCTSNGCGRVCSP----------VQQKEACEHQCRED---RDC 344
G CV V + G C+ C CS V Q+ C E +C
Sbjct: 229 GKCVNGVCVCFEGYSGVDCSRETCPVPCSEEHGRCVDGRCVCQEGFAGEDCNEPLCLHNC 288
Query: 345 GSGHQCVRKGCGHVCAPVHQVDVGICVTECR---VDQDCGEGRQCTSNGC-------GRV 494
+CV C VC D G +C +DC + +C + C G
Sbjct: 289 HGRGRCVENEC--VC------DEGFTGEDCGELICPKDCFDRGRCINGTCYCDEGFEGED 340
Query: 495 CSPAQQREACEHQCREDKDCGSGHQCV--RKGCGHVCSPIPQVSICVTECNVDQDCGAGR 668
C R AC H CR C G QCV G CS C ++C+ C GR
Sbjct: 341 CG----RLACPHGCRGRGRCEEG-QCVCDEGFAGADCSE----RRCPSDCHNRGRCLDGR 391
Query: 669 RCTSNG-----CGRVCSPP--QGGGLCVNRCRGNWDCG---AGEECIRKGCGRVCSPAQE 818
+G CG + P G G CVN G C GE+C + C C
Sbjct: 392 CECDDGFEGEDCGELRCPGGCSGHGRCVN---GQCVCDEGRTGEDCSQLRCPNDCHGRGR 448
Query: 819 PVVGICVDQCRRHW------------ECGPRMRCVSTGCGHICSPAQDQVEQRPGKCPVL 962
V G C +C + +C RCV+ C +C + R +CP
Sbjct: 449 CVQGRC--ECEHGFQGYDCSEMSCPHDCHQHGRCVNGMC--VCDDGYTGEDCRELRCP-- 502
Query: 963 PKGTIGLCAEFCSGDDSCPSGQKCCSHG-CGHSC 1061
CS C G+ C HG G C
Sbjct: 503 ---------GDCSQRGRCVDGRCVCEHGFAGPDC 527
Score = 58.5 bits (140), Expect = 8e-09
Identities = 90/367 (24%), Positives = 127/367 (34%), Gaps = 31/367 (8%)
Frame = +3
Query: 54 RKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICVMECKVD 233
R+ CG AP + + E + QCTS G G P E ++D
Sbjct: 108 RRACGCAAAPDVKELLSRLEELENLVSSLREQCTS-GAGCCLQPA----------EGRLD 156
Query: 234 QD--CGEGRRCTSNGCGRVCSPVQQKEAC-EHQCREDRDCGSGHQCVRKGCGHVCAPVHQ 404
C ++ GCG VC P + C E +C +C QCV C VC ++
Sbjct: 157 TRPFCSGRGNFSTEGCGCVCEPGWKGPNCSEPEC--PSNCHLRGQCVDGQC--VC---NE 209
Query: 405 VDVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQ-----QREACEHQCREDKD-CGSGH 566
G ++ DC + +C + C VC RE C C E+ C G
Sbjct: 210 GFTGEDCSQLACPSDCNDQGKCVNGVC--VCFEGYSGVDCSRETCPVPCSEEHGRCVDGR 267
Query: 567 QCVRKG-CGHVCSPIPQVSICVTECN-----VDQDCGAGRRCTSNGCGRVCSPPQ--GGG 722
++G G C+ +C+ C+ V+ +C T CG + P G
Sbjct: 268 CVCQEGFAGEDCNE----PLCLHNCHGRGRCVENECVCDEGFTGEDCGELICPKDCFDRG 323
Query: 723 LCVNRCRGNWDCG---AGEECIRKGCGRVCSPAQEPVVGICV----------DQCRRHWE 863
C+N G C GE+C R C C G CV + R +
Sbjct: 324 RCIN---GTCYCDEGFEGEDCGRLACPHGCRGRGRCEEGQCVCDEGFAGADCSERRCPSD 380
Query: 864 CGPRMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSH 1043
C R RC+ C C + + +CP CSG C +GQ C
Sbjct: 381 CHNRGRCLDGRCE--CDDGFEGEDCGELRCP-----------GGCSGHGRCVNGQCVCDE 427
Query: 1044 G-CGHSC 1061
G G C
Sbjct: 428 GRTGEDC 434
>ref|XP_003129006.2| PREDICTED: NF-X1-type zinc finger protein NFXL1 [Sus scrofa].
Length = 911
Score = 65.9 bits (159), Expect = 5e-11
Identities = 105/432 (24%), Positives = 143/432 (33%), Gaps = 79/432 (18%)
Frame = +3
Query: 3 EHQCREDRDCGSGHQCVR---KGCGHVCAPVHQVGICVTEC-NVDQDCGEGRQCTSNGCG 170
+H+C GS C R + C VC C + + DQ CG+ C ++ C
Sbjct: 320 QHKCENPCHAGSCPPCPRVSRQKC--VCGKQVAERSCASPLWHCDQVCGKTLSCRNHTCE 377
Query: 171 RVC---------------SPVQQ--------EDVGICVMECKVDQDCGEGR---RCTSNG 272
+VC P Q+ EDV C C +CG R RC
Sbjct: 378 QVCHVGACGDCPRSGKRFCPCQKSKFSLPCTEDVPTCGDSCDKVLECGIHRCSQRCHRGP 437
Query: 273 CGRVC----------------SPVQQKEACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQ 404
C C P + CE +C + RDC HQC RK C C P
Sbjct: 438 C-ETCRQEVEKHCRCGKHTKRMPCHKPYLCETKCVKMRDC-QKHQCRRKCCPGNCPP--- 492
Query: 405 VDVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCRE--DKDCGSGHQCVR 578
DQ+CG C ++ C VC R +C + C E D C G+ V
Sbjct: 493 -----------CDQNCGRTLGCRNHKCPSVC----HRGSC-YPCPETVDVKCSCGNTKVT 536
Query: 579 KGCGHVCSPIPQVSICVTECNVDQDCGAG----RRCTSNGCGRVCSPPQG-----GGLCV 731
CG + P C +C+ C RC C P Q G LC
Sbjct: 537 VPCGRERTTRPPK--CKEQCSRPPTCHHASQEKHRCHFGSCPPCHQPCQKVLEKCGHLCP 594
Query: 732 NRCR--------------GNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCRRHWECG 869
C G W+ + I+ C P Q P+ C+ + E
Sbjct: 595 APCHDQALVKQTGKHQPTGPWEQPSEPAFIQTAL--PCPPCQVPIPMECLGK----HEVS 648
Query: 870 PRMRCVSTG---CGHICSPAQD-QVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCC 1037
P + C + G C +C D Q +C + + IG C + C ++ C
Sbjct: 649 P-LPCHAVGPYSCTRVCGRTLDCQNHTCMKECHQVTE--IGSCTDKNKAGPECLQCEEGC 705
Query: 1038 SH----GCGHSC 1061
S GC H C
Sbjct: 706 SKSRPPGCPHPC 717
>ref|XP_003362090.1| PREDICTED: NFX1-type zinc finger-containing protein 1 [Sus scrofa].
Length = 1916
Score = 65.5 bits (158), Expect = 6e-11
Identities = 98/383 (25%), Positives = 128/383 (33%), Gaps = 18/383 (4%)
Frame = +3
Query: 54 RKGCGHVCA-------PVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGIC 212
R GCGHVC +H+ C+ C C +G +C C + C P Q
Sbjct: 1296 RLGCGHVCTRACHPYDSLHKEFQCMKPCQ-KVVCQDGHRCPLV-CFQECQPCQ------- 1346
Query: 213 VMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGHQCVRKGCGHVCA 392
V K+ CG + CS + C+ C + CG HQC CG C
Sbjct: 1347 VKVPKIILRCGHEQMVP-------CSMPESDFCCQEPCPKVLKCG--HQCSNP-CGEDC- 1395
Query: 393 PVHQVDVGICVTECRVDQDCGEGRQ--CTSNGCGRVCSPAQQREACEHQCREDKDCG--- 557
V C V+ CG +Q C+S + P + C +C DCG
Sbjct: 1396 ------VRFCSEMVTVNLKCGHRQQVKCSSVDGLKYDMPVK----CTTKCDTILDCGHPC 1445
Query: 558 --SGHQCVRKGCGHVCS-PIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLC 728
S H C C P ++ IC +C C C P Q C
Sbjct: 1446 PGSCHSCFEGRFHERCQQPCKRLLICSHKCQ-------------EPCIGECPPCQR--TC 1490
Query: 729 VNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHI 908
NRC +C +K CG +CSP EP V W RC C +
Sbjct: 1491 QNRC-------VHSQC-KKKCGELCSPCIEPCV----------W------RCQHYQCTQL 1526
Query: 909 CSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQTAVPDEKT 1088
CS D RP C V P + C C G C C C+ +E T
Sbjct: 1527 CSEPCD----RP-PCYV-PCTKLLACGHPCIG---------LCGEPCPKKCRVCNQEEVT 1571
Query: 1089 ---FPSRLDD**TLASFHNCSHM 1148
F S + +CSH+
Sbjct: 1572 QIFFGSEDEPDARFVQLEDCSHI 1594
>ref|XP_001928820.2| PREDICTED: WAP four-disulfide core domain protein 3 isoform 1 [Sus
scrofa].
Length = 113
Score = 62.8 bits (151), Expect(2) = 3e-10
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Frame = +3
Query: 522 CEHQCREDKDCGSGHQCVRKGCGHVC-----------SPIPQVSICVTECNVDQDCGAGR 668
CE C D C GH+C GCGH C P V C+ C VD++C AG
Sbjct: 15 CEELCDGDASCPQGHKCCSTGCGHACRGDIKGGRGGDCPNILVGPCIVSCWVDENCQAGE 74
Query: 669 RCTSNGCGRVC 701
+C +GC R C
Sbjct: 75 KCCKSGCSRFC 85
Score = 20.4 bits (41), Expect(2) = 3e-10
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +2
Query: 389 CPRPSSRCRYLCDG 430
CP C LCDG
Sbjct: 8 CPTDPLPCEELCDG 21
Score = 62.8 bits (151), Expect = 4e-10
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Frame = +3
Query: 312 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECRVDQDCGEGR 464
CE C D C GH+C GCGH C + VG C+ C VD++C G
Sbjct: 15 CEELCDGDASCPQGHKCCSTGCGHACRGDIKGGRGGDCPNILVGPCIVSCWVDENCQAGE 74
Query: 465 QCTSNGCGRVC 497
+C +GC R C
Sbjct: 75 KCCKSGCSRFC 85
Score = 59.7 bits (143), Expect = 4e-09
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Frame = +3
Query: 3 EHQCREDRDCGSGHQCVRKGCGHVC-----------APVHQVGICVTECNVDQDCGEGRQ 149
E C D C GH+C GCGH C P VG C+ C VD++C G +
Sbjct: 16 EELCDGDASCPQGHKCCSTGCGHACRGDIKGGRGGDCPNILVGPCIVSCWVDENCQAGEK 75
Query: 150 CTSNGCGRVC 179
C +GC R C
Sbjct: 76 CCKSGCSRFC 85
Score = 58.5 bits (140), Expect = 8e-09
Identities = 29/80 (36%), Positives = 38/80 (47%)
Frame = +3
Query: 834 CVDQCRRHWECGPRMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDS 1013
C + C C +C STGCGH C D R G CP + +G C C D++
Sbjct: 15 CEELCDGDASCPQGHKCCSTGCGHACRG--DIKGGRGGDCPNI---LVGPCIVSCWVDEN 69
Query: 1014 CPSGQKCCSHGCGHSCQTAV 1073
C +G+KCC GC C +V
Sbjct: 70 CQAGEKCCKSGCSRFCVLSV 89
Score = 55.8 bits (133), Expect = 5e-08
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Frame = +3
Query: 102 CVTECNVDQDCGEGRQCTSNGCGRVC---------SPVQQEDVGICVMECKVDQDCGEGR 254
C C+ D C +G +C S GCG C VG C++ C VD++C G
Sbjct: 15 CEELCDGDASCPQGHKCCSTGCGHACRGDIKGGRGGDCPNILVGPCIVSCWVDENCQAGE 74
Query: 255 RCTSNGCGRVC 287
+C +GC R C
Sbjct: 75 KCCKSGCSRFC 85
Score = 54.7 bits (130), Expect = 1e-07
Identities = 22/40 (55%), Positives = 25/40 (62%)
Frame = +3
Query: 945 GKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQ 1064
G+CP P C E C GD SCP G KCCS GCGH+C+
Sbjct: 6 GECPTDPLP----CEELCDGDASCPQGHKCCSTGCGHACR 41
Score = 51.6 bits (122), Expect = 1e-06
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Frame = +3
Query: 603 PIPQVSICVTECNVDQDCGAGRRCTSNGCGRVC-SPPQGG----------GLCVNRCRGN 749
P+P C C+ D C G +C S GCG C +GG G C+ C +
Sbjct: 12 PLP----CEELCDGDASCPQGHKCCSTGCGHACRGDIKGGRGGDCPNILVGPCIVSCWVD 67
Query: 750 WDCGAGEECIRKGCGRVC 803
+C AGE+C + GC R C
Sbjct: 68 ENCQAGEKCCKSGCSRFC 85
>ref|NP_001186819.1| very low-density lipoprotein receptor [Sus scrofa].
Length = 845
Score = 58.9 bits (141), Expect = 6e-09
Identities = 87/337 (25%), Positives = 119/337 (35%), Gaps = 72/337 (21%)
Frame = +3
Query: 132 CGEGRQCTSNGCGRV--CSPVQ-QEDVGICVM---ECKVDQDCGEG---RRCTSNGCGR- 281
C R+ + G GR C P Q Q G C+ +C D+DC +G + C C
Sbjct: 16 CLAPRESGATGAGRKAKCEPSQFQCTNGRCITLLWKCDGDEDCADGSDEKNCVKKTCAES 75
Query: 282 --VCSPVQQKEACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTEC-----RV 440
VCS Q QC D DC G + C ++++ G T+C R
Sbjct: 76 DFVCSNGQCVPN-RWQCDGDPDCEDGSDESPEQCHMRTCRINEISCGARSTQCIPVSWRC 134
Query: 441 D--QDCGEGRQCTSNGCGRV-CSPAQ---QREAC---EHQCREDKDCGSGH---QCVRKG 584
D DC G CG + CSP + C C DC G C
Sbjct: 135 DGENDCDSGED--EENCGNITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCAPPT 192
Query: 585 CG--------HVCSPIPQVSICVTECNVDQDCGAGRRCTSNGCGR------VCSPPQ--- 713
CG C PI V C+ D DC + CGR C +
Sbjct: 193 CGAHEFQCSTSSCIPISWV------CDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQC 246
Query: 714 GGGLCVN---RCRGNWDCGAGEE---CIRKGC---------------GRVCSPAQEPVVG 830
G G C++ RC G+ DC G + C + C R C+ ++ V G
Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFECEDGSCIHGSRQCNGIRDCVDG 306
Query: 831 ICVDQCRRHWEC-GP-RMRCVSTGC---GHICSPAQD 926
C+ +C GP + +C S C +C+ QD
Sbjct: 307 SDEVNCKNVNQCLGPGKFKCRSGECIDISKVCNQEQD 343
>ref|NP_999112.1| WAP four-disulfide core domain protein 2 precursor [Sus scrofa].
Length = 123
Score = 58.5 bits (140), Expect = 8e-09
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 834 CVDQCRRHWECGPRMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKG--TIGLCAEFCSGD 1007
C +C +C ++C GC IC ++ G CP + +GLC + C D
Sbjct: 44 CTQECLSDADCADNLKCCKAGCVTICQ----MPNEKEGSCPQVDIAFPQLGLCLDQCQVD 99
Query: 1008 DSCPSGQKCCSHGCGH-SCQTAV 1073
CP KCC +GCG SC T V
Sbjct: 100 SQCPGQLKCCRNGCGKVSCVTPV 122
Score = 57.4 bits (137), Expect = 2e-08
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Frame = +3
Query: 282 VCSPVQQKEACEHQCREDRDCGSGHQCVRKGCGHVCAPVH-------QVDV-----GICV 425
VC V+ C +C D DC +C + GC +C + QVD+ G+C+
Sbjct: 34 VCPAVEVDMNCTQECLSDADCADNLKCCKAGCVTICQMPNEKEGSCPQVDIAFPQLGLCL 93
Query: 426 TECRVDQDCGEGRQCTSNGCGRV 494
+C+VD C +C NGCG+V
Sbjct: 94 DQCQVDSQCPGQLKCCRNGCGKV 116
Score = 57.0 bits (136), Expect = 2e-08
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Frame = +3
Query: 492 VCSPAQQREACEHQCREDKDCGSGHQCVRKGCGHVCS--------------PIPQVSICV 629
VC + C +C D DC +C + GC +C PQ+ +C+
Sbjct: 34 VCPAVEVDMNCTQECLSDADCADNLKCCKAGCVTICQMPNEKEGSCPQVDIAFPQLGLCL 93
Query: 630 TECNVDQDCGAGRRCTSNGCGRV-CSPP 710
+C VD C +C NGCG+V C P
Sbjct: 94 DQCQVDSQCPGQLKCCRNGCGKVSCVTP 121
Score = 54.7 bits (130), Expect = 1e-07
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Frame = +3
Query: 72 VCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQED------------VGICV 215
VC V C EC D DC + +C GC +C +++ +G+C+
Sbjct: 34 VCPAVEVDMNCTQECLSDADCADNLKCCKAGCVTICQMPNEKEGSCPQVDIAFPQLGLCL 93
Query: 216 MECKVDQDCGEGRRCTSNGCGRV 284
+C+VD C +C NGCG+V
Sbjct: 94 DQCQVDSQCPGQLKCCRNGCGKV 116
Score = 51.2 bits (121), Expect = 1e-06
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Frame = +3
Query: 384 VCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREA-------------- 521
VC P +VD+ C EC D DC + +C GC +C ++E
Sbjct: 34 VC-PAVEVDMN-CTQECLSDADCADNLKCCKAGCVTICQMPNEKEGSCPQVDIAFPQLGL 91
Query: 522 CEHQCREDKDCGSGHQCVRKGCGHVCSPIP 611
C QC+ D C +C R GCG V P
Sbjct: 92 CLDQCQVDSQCPGQLKCCRNGCGKVSCVTP 121
Score = 49.7 bits (117), Expect = 4e-06
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 14/85 (16%)
Frame = +3
Query: 174 VCSPVQQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEA-------------- 311
VC P + D+ C EC D DC + +C GC +C +KE
Sbjct: 34 VC-PAVEVDMN-CTQECLSDADCADNLKCCKAGCVTICQMPNEKEGSCPQVDIAFPQLGL 91
Query: 312 CEHQCREDRDCGSGHQCVRKGCGHV 386
C QC+ D C +C R GCG V
Sbjct: 92 CLDQCQVDSQCPGQLKCCRNGCGKV 116
Score = 49.7 bits (117), Expect = 4e-06
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Frame = +3
Query: 696 VCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQE------------PVVGICV 839
VC + C C + DC +C + GC +C E P +G+C+
Sbjct: 34 VCPAVEVDMNCTQECLSDADCADNLKCCKAGCVTICQMPNEKEGSCPQVDIAFPQLGLCL 93
Query: 840 DQCRRHWECGPRMRCVSTGCGHI 908
DQC+ +C +++C GCG +
Sbjct: 94 DQCQVDSQCPGQLKCCRNGCGKV 116
Score = 48.9 bits (115), Expect = 6e-06
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 14/70 (20%)
Frame = +3
Query: 9 QCREDRDCGSGHQCVRKGCGHVCAPVH--------------QVGICVTECNVDQDCGEGR 146
+C D DC +C + GC +C + Q+G+C+ +C VD C
Sbjct: 47 ECLSDADCADNLKCCKAGCVTICQMPNEKEGSCPQVDIAFPQLGLCLDQCQVDSQCPGQL 106
Query: 147 QCTSNGCGRV 176
+C NGCG+V
Sbjct: 107 KCCRNGCGKV 116
>ref|XP_003354310.1| PREDICTED: multiple epidermal growth factor-like domains protein 10
[Sus scrofa].
Length = 1152
Score = 57.4 bits (137), Expect = 2e-08
Identities = 101/409 (24%), Positives = 121/409 (29%), Gaps = 69/409 (16%)
Frame = +3
Query: 30 CGSGHQCVRKG-CGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCS---PVQQE 197
C QCV G C HV G C+ E D E R C G C P +
Sbjct: 257 CAETCQCVNGGKCYHVS------GSCLCEAGFAGDRCEARLCPEGLYGIKCDKHCPCHPD 310
Query: 198 DVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEH--QCREDRDCGS------- 350
+ C + +C + C CSP EAC+ C+ DC S
Sbjct: 311 NTHSCH---PMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGKCTC 367
Query: 351 -----GHQCVRK--------------GCGH--VCAPV----------HQVDVGICVTE-- 431
G C GC + +C+PV H VD I
Sbjct: 368 APGFKGIDCSTPCSLGTYGVNCSSLCGCKNDAMCSPVDGSCTCKAGWHGVDCSISCPSGT 427
Query: 432 ----CRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCREDKDCGSGHQCVRKGCGHVC 599
C + C G C + C+P + E CE C +D G H R C H
Sbjct: 428 WGFGCNLTCQCLNGGACNTLDGTCTCAPGWRGEKCEFPC-QDGTYGL-HCAERCDCSHAD 485
Query: 600 SPIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNRC-RGNWDCGAGEEC 776
P C C P G C + C G W C
Sbjct: 486 GCHPTTGHC-----------------------RCLPGWSGVHCDSVCAEGRWGPNCSLPC 522
Query: 777 IRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHICSP------------- 917
K G CSP GIC EC P R T C ICSP
Sbjct: 523 YCKN-GASCSPDD----GIC--------ECAPGFR--GTTCQRICSPGFYGHRCSQTCPQ 567
Query: 918 ---AQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQ--KCCSHGC 1049
+ G C LP T LC E CPSG+ K C+ C
Sbjct: 568 CVHSSGPCHHITGLCDCLPGFTGALCNEV------CPSGRFGKNCAGIC 610
Score = 55.5 bits (132), Expect = 7e-08
Identities = 101/446 (22%), Positives = 141/446 (31%), Gaps = 93/446 (20%)
Frame = +3
Query: 12 CREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSN-GCGR--VCS 182
C++ C +G C CAP + C T C++ G C+S GC +CS
Sbjct: 346 CQQICSCQNGADCDSVTGKCTCAPGFKGIDCSTPCSLGT---YGVNCSSLCGCKNDAMCS 402
Query: 183 PVQQEDVGICVME--------------------CKVDQDCGEGRRCTSNGCGRVCSPVQQ 302
PV G C + C + C G C + C+P +
Sbjct: 403 PVD----GSCTCKAGWHGVDCSISCPSGTWGFGCNLTCQCLNGGACNTLDGTCTCAPGWR 458
Query: 303 KEACEHQCREDR---------DCGSGHQCVRKGCGHV-CAP----VHQVDV---GICVTE 431
E CE C++ DC C GH C P VH V G
Sbjct: 459 GEKCEFPCQDGTYGLHCAERCDCSHADGC-HPTTGHCRCLPGWSGVHCDSVCAEGRWGPN 517
Query: 432 CRVDQDCGEGRQCTSNG-------------CGRVCSPAQQREACEHQCREDKDCGSGHQC 572
C + C G C+ + C R+CSP C C QC
Sbjct: 518 CSLPCYCKNGASCSPDDGICECAPGFRGTTCQRICSPGFYGHRCSQTCP---------QC 568
Query: 573 VRKG--CGHV-----CSPIPQVSICVTEC---NVDQDCGAGRRCTSNG------------ 686
V C H+ C P ++C C ++C CT+NG
Sbjct: 569 VHSSGPCHHITGLCDCLPGFTGALCNEVCPSGRFGKNCAGICTCTNNGTCNPIDRSCQCY 628
Query: 687 -------CGRVCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQ 845
C + C P G C++ C +C G C C+P + C +
Sbjct: 629 PGWIGSDCSQPCPPAHWGPNCIHTC----NCHNGAFCSAYDGECKCTPGWTGL--YCTQR 682
Query: 846 CRRHW---ECGPRMRCVS-TGCGHICSPAQDQVEQRPGKC-PVLPKGTIGL-CAEFCS-- 1001
C + +C RC + C HI + C P GT G C + C
Sbjct: 683 CPLGFYGKDCALICRCQNGADCDHISGQCTCRTGFMGKHCEQKCPAGTYGYGCRQICDCL 742
Query: 1002 GDDSCP--SGQKCCSHGC-GHSCQTA 1070
+ +C +G CS G G C A
Sbjct: 743 NNSTCDHITGTCYCSPGWKGARCDQA 768
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,335,949
Number of extensions: 1523536
Number of successful extensions: 6883
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 6317
Number of HSP's successfully gapped: 72
Length of query: 440
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 338
Effective length of database: 8,804,438
Effective search space: 2975900044
Effective search space used: 2975900044
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012525
(1320 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112453.2| tenascin-X [Mus musculus]. 80 5e-15
Alignment gi|NP_032538.2| prolow-density lipoprotein receptor-related pro... 72 1e-12
Alignment gi|NP_076349.1| keratin-associated protein 5-3 [Mus musculus]. 71 2e-12
Alignment gi|NP_082237.1| WAP four-disulfide core domain 3 [Mus musculus]. 71 2e-12
Alignment gi|NP_001156449.1| multiple epidermal growth factor-like domain... 71 2e-12
Alignment gi|NP_001028368.2| NFX1-type zinc finger-containing protein 1 [... 70 3e-12
Alignment gi|NP_598682.2| nuclear transcription factor, X-box binding-lik... 67 4e-11
Alignment gi|NP_080599.1| WAP four-disulfide core domain protein 2 precur... 64 2e-10
Alignment gi|NP_001075426.1| activated macrophage/microglia WAP domain pr... 64 3e-10
Alignment gi|XP_003086827.1| PREDICTED: extracellular peptidase inhibitor... 64 3e-10
>ref|NP_112453.2| tenascin-X [Mus musculus].
Length = 3126
Score = 79.7 bits (195), Expect = 5e-15
Identities = 110/412 (26%), Positives = 144/412 (34%), Gaps = 72/412 (17%)
Frame = +3
Query: 27 DCGSGHQCVRKGCGHVCAPVHQV---------------GICVTECNVDQDCGEGRQCTSN 161
DC +CVR C VC P + G CV V + G C+
Sbjct: 177 DCNDQGRCVRGRC--VCFPGYSGPSCSWPSCPGDCQGRGRCVKGVCVCRAGFSGPDCSQR 234
Query: 162 GCGRVCSPVQQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRD 341
C R C+ + + G CV + G C C R CS Q+ CE+
Sbjct: 235 SCPRNCNQRGRCEEGRCVCDPGY-----SGEDCGVRSCPRGCS---QRGRCENGLCVCNP 286
Query: 342 CGSGHQCVRKGCGHVCAPVHQVDVGICV-------TECRV---DQDCGEGRQCTSNGCGR 491
SG C + C C+ + + G CV +C + DCG+G +C C
Sbjct: 287 GYSGEDCGVRNCPRGCSQRGRCEDGRCVCDPGYSGEDCSMRTCPWDCGDGGRCVDGRC-- 344
Query: 492 VCSPAQQRE-----ACEHQCR-----EDKDC-----GSGHQCVRKGC-------GH---- 593
VC P E C CR ED +C SG C + C GH
Sbjct: 345 VCWPGYSGEDCSTRTCPRDCRGRGRCEDGECICDAGYSGDDCGVRSCPGDCNQRGHCEDG 404
Query: 594 --VCSPIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNR-----CRGNW 752
VC P + C T +DC RC C VC G C R CRG
Sbjct: 405 RCVCWPGYTGADCSTRA-CPRDCRGRGRCEDGVC--VCHAGYSGEDCGVRSCPGDCRGRG 461
Query: 753 DCGAGE-ECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHICSPAQDQ 929
+C +G C GR C P +C R RCV C +C+P
Sbjct: 462 NCESGRCVCWPGYTGRDCGTRACP------------GDCRGRGRCVDGRC--VCNPGFTG 507
Query: 930 VEQRPGKCPVLPKG------TIGLCAEFCSGDD----SCPS---GQKCCSHG 1046
+ +CP +G + +CA SGDD SCPS G+ C +G
Sbjct: 508 EDCGSRRCPGDCRGHGHCENGVCVCAVGYSGDDCSTRSCPSDCRGRGQCLNG 559
Score = 71.2 bits (173), Expect = 2e-12
Identities = 103/412 (25%), Positives = 134/412 (32%), Gaps = 61/412 (14%)
Frame = +3
Query: 24 RDCGSGHQCVRKGCGHVCAPVHQ-----VGICVTECNVDQDCGEGR----------QCTS 158
RDC +C C +C + V C +CN C +GR C++
Sbjct: 362 RDCRGRGRCEDGEC--ICDAGYSGDDCGVRSCPGDCNQRGHCEDGRCVCWPGYTGADCST 419
Query: 159 NGCGRVCSPVQQEDVGICVMECKVD-QDCG--------EGR-RCTSNGC-------GRVC 287
C R C + + G+CV +DCG GR C S C GR C
Sbjct: 420 RACPRDCRGRGRCEDGVCVCHAGYSGEDCGVRSCPGDCRGRGNCESGRCVCWPGYTGRDC 479
Query: 288 SPVQQKEACEHQCREDRDCG----------SGHQCVRKGCGHVCAPVHQVDVGICVTECR 437
AC CR C +G C + C C + G+CV
Sbjct: 480 GT----RACPGDCRGRGRCVDGRCVCNPGFTGEDCGSRRCPGDCRGHGHCENGVCVCAVG 535
Query: 438 VDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCREDKDCGSGHQCVRKGCGHVCSP--IP 611
D R C S+ G R C + E + SG C + C CS +
Sbjct: 536 YSGDDCSTRSCPSDCRG--------RGQCLNGLCECDEGYSGEDCGIRRCPRDCSQHGVC 587
Query: 612 QVSICV-------TECNV---DQDCGAGRRCTSNGCGRVCSPPQGGGLCVNR-----CRG 746
Q +C+ +C++ DC RC C VC+P G C R CRG
Sbjct: 588 QDGLCMCHAGYAGEDCSIRTCPADCRRRGRCEDGRC--VCNPGYTGPACATRTCPADCRG 645
Query: 747 NWDCGAGE-ECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHICSPAQ 923
C G C G C +EP C CGPR C + C +C
Sbjct: 646 RGRCVQGVCMCYVGYSGEDCG-QEEPPASACPG------GCGPRELCRAGQC--VC---- 692
Query: 924 DQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHG-CGHSCQTAVP 1076
VE G P I C C C G+ C G G C +P
Sbjct: 693 --VEGFRG-----PDCAIQTCPGDCRSRGECIQGRCVCQEGYAGDDCGEEIP 737
Score = 63.2 bits (152), Expect = 5e-10
Identities = 86/338 (25%), Positives = 112/338 (33%), Gaps = 17/338 (5%)
Frame = +3
Query: 102 CVTECNVDQDCGEGR-QCTSNGCGRVCS----PVQQEDVGICVMECKVDQDCGEGRRCTS 266
C +CN C GR C G CS P + G CV V + G C+
Sbjct: 174 CPEDCNDQGRCVRGRCVCFPGYSGPSCSWPSCPGDCQGRGRCVKGVCVCRAGFSGPDCSQ 233
Query: 267 NGCGRVCSPVQQKEACEH-QCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVD 443
C R C+ Q+ CE +C D SG C + C C+ + + G+CV C
Sbjct: 234 RSCPRNCN---QRGRCEEGRCVCDPGY-SGEDCGVRSCPRGCSQRGRCENGLCV--CNPG 287
Query: 444 QDCGEGRQCTSNGCGRVCSPAQQREACEH-QCREDKDCGSGHQCVRKGCGHVCSPIPQVS 620
G C C R CS QR CE +C D SG C + C
Sbjct: 288 YS---GEDCGVRNCPRGCS---QRGRCEDGRCVCDPGY-SGEDCSMRTC----------- 329
Query: 621 ICVTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRV 800
DCG G RC C VC W +GE+C + C R
Sbjct: 330 --------PWDCGDGGRCVDGRC--VC----------------WPGYSGEDCSTRTCPRD 363
Query: 801 CSPAQEPVVGICV-------DQCRRH---WECGPRMRCVSTGCGHICSPAQDQVEQRPGK 950
C G C+ D C +C R C C +C P +
Sbjct: 364 CRGRGRCEDGECICDAGYSGDDCGVRSCPGDCNQRGHCEDGRC--VCWPGYTGADCSTRA 421
Query: 951 CPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQ 1064
CP +G G C + + SG+ C C C+
Sbjct: 422 CPRDCRGR-GRCEDGVCVCHAGYSGEDCGVRSCPGDCR 458
>ref|NP_032538.2| prolow-density lipoprotein receptor-related protein 1 [Mus musculus].
Length = 4545
Score = 72.0 bits (175), Expect = 1e-12
Identities = 99/407 (24%), Positives = 140/407 (34%), Gaps = 60/407 (14%)
Frame = +3
Query: 9 QCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTE--------CNVDQDCGEGRQ----C 152
+C +CG G + C V +Q +T+ C+ D DC +G C
Sbjct: 3433 RCNGQDNCGDGED--ERDCPEVTCAPNQFQCSITKRCIPRVWVCDRDNDCVDGSDEPANC 3490
Query: 153 TSNGCGRVCSPVQQEDVGICV---MECKVDQDCGEGRRCTSNGCG-RVCSPVQ---QKEA 311
T CG + +D G C+ +C + DCG+G C R C P Q +
Sbjct: 3491 TQMTCG--VDEFRCKDSGRCIPARWKCDGEDDCGDGSDEPKEECDERTCEPYQFRCKNNR 3548
Query: 312 C---EHQCREDRDCGSG---HQCVRKGCGHV---CAPVHQVDVGICVT---ECRVDQDCG 455
C QC D DCG C + C CA G C+ +C D DC
Sbjct: 3549 CVPGRWQCDYDNDCGDNSDEESCTPRPCSESEFSCAN------GRCIAGRWKCDGDHDCA 3602
Query: 456 EGRQCTSNGCGRVCSPAQQREACEH------QCREDKDCGSGHQCVRKGCGHVCSPIPQV 617
+G C C Q + H +C D DC G G G P+ +
Sbjct: 3603 DGSD--EKDCTPRCDMDQFQCKSGHCIPLRWRCDADADCMDGSDEEACGTGVRTCPLDEF 3660
Query: 618 ----SIC---VTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVN---------RCRGN 749
++C +C+ + DCG C R PP C N +C G
Sbjct: 3661 QCNNTLCKPLAWKCDGEDDCGDNSDENPEECARFICPPNRPFRCKNDRVCLWIGRQCDGV 3720
Query: 750 WDCGAGEECIRKGCGRVCSP--AQEPVVGICVDQCRRHWECGPRMRCVSTG--CGHI--C 911
+CG G + C P AQ P C D ++ + C RC+S+ C C
Sbjct: 3721 DNCGDGTD------EEDCEPPTAQNP---HCKD--KKEFLC-RNQRCLSSSLRCNMFDDC 3768
Query: 912 SPAQDQVEQRPGKCPVLPKGT-IGLCAEFCSGDDSCPSGQKCCSHGC 1049
D+ + C + PK T A C + C +K C
Sbjct: 3769 GDGSDEED-----CSIDPKLTSCATNASMCGDEARCVRTEKAAYCAC 3810
Score = 65.9 bits (159), Expect = 7e-11
Identities = 98/399 (24%), Positives = 130/399 (32%), Gaps = 49/399 (12%)
Frame = +3
Query: 12 CREDRDCGSGHQCVRKGCGHVCAPVHQV----GICVT---ECNVDQDCGEGRQCTSNGCG 170
C D DCG+ C P +Q G C+ C++D DCG+ +++
Sbjct: 915 CDGDNDCGNSEDESNATCSARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAY 974
Query: 171 RVCSPVQQE--DVGICV---MECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCRED 335
C P+ Q + G C+ C D DCG+ GC CS Q K
Sbjct: 975 PTCFPLTQFTCNNGRCININWRCDNDNDCGD--NSDEAGCSHSCSSTQFK---------- 1022
Query: 336 RDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGC-GRVCSPAQQ 512
C SG C P H C D DCG+ T C + P
Sbjct: 1023 --CNSGR----------CIPEHWT--------CDGDNDCGDYSDETHANCTNQATRPPGG 1062
Query: 513 REACEHQCR-------------EDKDC-GSGHQCVRKGCGHVCSP-----IPQVSICVTE 635
+ E QCR D DC S + +G HVC P + C+++
Sbjct: 1063 CHSDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGVTHVCDPNVKFGCKDSARCISK 1122
Query: 636 ---CNVDQDC----------GAGRRCTSNGCGR---VCSPPQGGGLCVNRCRGNWDCGAG 767
C+ D DC R S+ C VC PP C G DCG G
Sbjct: 1123 AWVCDGDSDCEDNSDEENCEALACRPPSHPCANNTSVCLPPD------KLCDGKDDCGDG 1176
Query: 768 EECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHICSPAQDQVEQRPG 947
+ G +C DQC + + GC H CS A PG
Sbjct: 1177 SD-----EGELC------------DQCSLN----------NGGCSHNCSVA-------PG 1202
Query: 948 KCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSH-GCGHSC 1061
+ V + L E S + +C C H C C
Sbjct: 1203 EGIVC---SCPLGMELGSDNHTCQIQSYCAKHLKCSQKC 1238
Score = 56.6 bits (135), Expect = 4e-08
Identities = 79/322 (24%), Positives = 111/322 (34%), Gaps = 56/322 (17%)
Frame = +3
Query: 114 CNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGI-CVME---CKVDQDCGEGRRCTSNGCGR 281
C+ + DC G T C + CS Q E C+ + C DCG+G ++ G+
Sbjct: 2716 CDKEDDCENGEDETH--CNKFCSEAQFECQNHRCISKQWLCDGSDDCGDGSDEAAHCEGK 2773
Query: 282 VCSPVQQKEACEH-------QCREDRDCGSG-HQCVRKGC--------------GHVCAP 395
C P H C D+DC G + V GC +C P
Sbjct: 2774 TCGPSSFSCPGTHVCVPERWLCDGDKDCTDGADESVTAGCLYNSTCDDREFMCQNRLCIP 2833
Query: 396 VHQVDVGICVTECRVDQDCGEGR----QCTSNGCGR---VCSPAQQREACEHQCREDKDC 554
H V C D+DC +G +C CG C+ + + + +C + DC
Sbjct: 2834 KHFV--------CDHDRDCADGSDESPECEYPTCGPNEFRCANGRCLSSRQWECDGENDC 2885
Query: 555 GSGHQCVRKG--C---GHVCSPIPQV----SICVTE---CNVDQDCGAG---RRCTSN-- 683
K C H C+ Q CV E CN DCG G R C N
Sbjct: 2886 HDHSDEAPKNPHCTSPEHKCNASSQFLCSSGRCVAEALLCNGQDDCGDGSDERGCHVNEC 2945
Query: 684 ------GCGRVCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQ 845
GC + C + G C RCR + K GR C+ +D+
Sbjct: 2946 LSRKLSGCSQDCEDLKIGFKC--RCRPGFRL--------KDDGRTCAD---------LDE 2986
Query: 846 CRRHWECGPRMRCVSTGCGHIC 911
C + C C++T + C
Sbjct: 2987 CSTTFPCS--QLCINTHGSYKC 3006
>ref|NP_076349.1| keratin-associated protein 5-3 [Mus musculus].
Length = 356
Score = 71.2 bits (173), Expect = 2e-12
Identities = 100/350 (28%), Positives = 109/350 (31%), Gaps = 16/350 (4%)
Frame = +3
Query: 60 GCGHVCAPVHQVGICVTECNVDQDCGEGRQCTS-NGCGRVCSPVQQEDVGICVMECKVDQ 236
GCG C V CV C+ G C+S GCG G C C
Sbjct: 9 GCGSSCCK--PVCCCVPVCSCSSCGGCKGGCSSCGGCG---------SCGGCKGGCGSCG 57
Query: 237 DCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGHQCVRKGCGHV--CAPVHQVD 410
CG C GCG C C+ C CGS C + GCG C
Sbjct: 58 GCGSCGGC-KGGCGS-CGGCGSCGGCKGGCGSCGGCGSCGGC-KGGCGSCGGCG-----S 109
Query: 411 VGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCREDKDCGSGHQCVRKGCG 590
G C C CG C GCG C C+ C CGS C + GCG
Sbjct: 110 CGGCKGGCSSCGGCGSCGGC-KGGCGS-CGGCGSCGGCKGGCGSCGGCGSCGGC-KGGCG 166
Query: 591 HVCSPIPQVSICVTECNVDQDCGA-----GRRCTSNGCGRV------CSPPQGGGLCVNR 737
C C C CG+ G C+ GCG CS G G C
Sbjct: 167 S-CGGCGSCGGCKGGCGSCGGCGSCGGCKGGCCSCGGCGSCGGCKGGCSSCGGCGSCGGC 225
Query: 738 CRGNWDCGAGEECIRKGCGRVCSPAQE-PVVGICVDQCRRHWECGPRMRCVST-GCGHIC 911
G CG C GC CS G C C CG C S GC C
Sbjct: 226 KGGCCSCGGCGSC--GGCKGGCSSCGGCGTCGGCKGCCSSCGGCGSCGGCGSCGGCKGGC 283
Query: 912 SPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSC 1061
G C G+ G C C C G C GCG SC
Sbjct: 284 GSC--------GGC-----GSCGGCKGGCGSCGGCKGGCSSCG-GCG-SC 318
>ref|NP_082237.1| WAP four-disulfide core domain 3 [Mus musculus].
Length = 130
Score = 70.9 bits (172), Expect = 2e-12
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Frame = +3
Query: 312 CEHQCREDRDCGSGHQCVRKGCGHVC---------APVHQVDVGICVTECRVDQDCGEGR 464
C+ C D C GH+C GCGH C ++ VG+C+ +C +D++C G
Sbjct: 32 CQELCTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVGLCIVQCMMDENCQSGE 91
Query: 465 QCTSNGCGRVCSPAQQ 512
+C +GCGR C P Q
Sbjct: 92 RCCKSGCGRFCIPGLQ 107
Score = 69.3 bits (168), Expect = 6e-12
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Frame = +3
Query: 522 CEHQCREDKDCGSGHQCVRKGCGHVCS-----------PIPQVSICVTECNVDQDCGAGR 668
C+ C D+ C GH+C GCGH C P V +C+ +C +D++C +G
Sbjct: 32 CQELCTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVGLCIVQCMMDENCQSGE 91
Query: 669 RCTSNGCGRVCSP 707
RC +GCGR C P
Sbjct: 92 RCCKSGCGRFCIP 104
Score = 66.6 bits (161), Expect = 4e-11
Identities = 37/100 (37%), Positives = 46/100 (46%)
Frame = +3
Query: 762 AGEECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHICSPAQDQVEQR 941
AGE +R C P QE C C +C STGCGH C D R
Sbjct: 16 AGEHALRGECPADPLPCQE--------LCTGDESCPQGHKCCSTGCGHACRG--DIEGGR 65
Query: 942 PGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSC 1061
G+CP + +GLC C D++C SG++CC GCG C
Sbjct: 66 DGQCPRI---LVGLCIVQCMMDENCQSGERCCKSGCGRFC 102
Score = 66.2 bits (160), Expect = 5e-11
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Frame = +3
Query: 12 CREDRDCGSGHQCVRKGCGHVC-----------APVHQVGICVTECNVDQDCGEGRQCTS 158
C D C GH+C GCGH C P VG+C+ +C +D++C G +C
Sbjct: 36 CTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVGLCIVQCMMDENCQSGERCCK 95
Query: 159 NGCGRVCSP 185
+GCGR C P
Sbjct: 96 SGCGRFCIP 104
Score = 65.1 bits (157), Expect = 1e-10
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Frame = +3
Query: 102 CVTECNVDQDCGEGRQCTSNGCGRVC---------SPVQQEDVGICVMECKVDQDCGEGR 254
C C D+ C +G +C S GCG C + VG+C+++C +D++C G
Sbjct: 32 CQELCTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQCPRILVGLCIVQCMMDENCQSGE 91
Query: 255 RCTSNGCGRVCSP 293
RC +GCGR C P
Sbjct: 92 RCCKSGCGRFCIP 104
Score = 63.9 bits (154), Expect = 3e-10
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Frame = +3
Query: 558 SGHQCVRKGCGHVCSPIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPP-QGG----- 719
+G +R C P+P C C D+ C G +C S GCG C +GG
Sbjct: 16 AGEHALRGECP--ADPLP----CQELCTGDESCPQGHKCCSTGCGHACRGDIEGGRDGQC 69
Query: 720 -----GLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPV 824
GLC+ +C + +C +GE C + GCGR C P +P+
Sbjct: 70 PRILVGLCIVQCMMDENCQSGERCCKSGCGRFCIPGLQPL 109
Score = 56.6 bits (135), Expect = 4e-08
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = +3
Query: 945 GKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQ 1064
G+CP P C E C+GD+SCP G KCCS GCGH+C+
Sbjct: 23 GECPADPLP----CQELCTGDESCPQGHKCCSTGCGHACR 58
>ref|NP_001156449.1| multiple epidermal growth factor-like domains protein 6 precursor
[Mus musculus].
Length = 1572
Score = 70.9 bits (172), Expect = 2e-12
Identities = 100/393 (25%), Positives = 119/393 (30%), Gaps = 44/393 (11%)
Frame = +3
Query: 27 DCGSGHQCVRKGCGHVCAPVHQVGICVTECNVD---QDCGEGRQCTSNGCGRVCSPVQQE 197
DC +G C G C IC C D ++C C + G C PV
Sbjct: 528 DCRNGGTCFPGLDGCDCPEGWTGIICNETCPPDTFGKNCSSPCICQNGG---TCDPVS-- 582
Query: 198 DVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGHQCVR--- 368
G C RC G C K CR+ C + +C R
Sbjct: 583 --GAC--------------RCPPGVSGAHCEDGCPKGFYGKHCRKKCHCANRGRCHRLYG 626
Query: 369 ----------KGCGHVCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQRE 518
+ C H+ P G C +C +Q R C S C Q E
Sbjct: 627 ACLCDPGLYGRFC-HLACPPWAFGPG-CSEDCLCEQS--HTRSCNSKDGSCSCKAGFQGE 682
Query: 519 ACEHQ---------CREDKDCGSGHQC--VRKGCGHVCSPIPQVSICVTECNVDQ---DC 656
CE + CR C G C V C C P Q C EC V +C
Sbjct: 683 RCEAECEPGSFGPGCRNRCTCRPGVACDPVSGECRTQCPPGYQGEDCGQECPVGTFGVNC 742
Query: 657 GAGRRCTSNGCGRV-----CSPPQGGGLCVNRC-RGNWDCGAGEECIRKGCGRVCSPAQE 818
C C RV C P + G C C G W G E C G C P
Sbjct: 743 SGSCSCVGAPCHRVTGECLCPPGKTGEDCGADCPEGRWGLGCQEICPACEHGASCDPETG 802
Query: 819 PVVGI-------CVDQCRRHW-ECGPRMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKGT 974
+ + C D C W G +MRC GH C PA G+C P T
Sbjct: 803 TCLCLPGFVGSRCQDACPAGWFGTGCQMRCACANDGH-CHPA-------TGRCSCAPGWT 854
Query: 975 IGLCAEFCSGDDSCPSGQKCCSHGCGHSCQTAV 1073
C C P C+ GH AV
Sbjct: 855 GLSCQRACDSGHWGPDCIHPCNCSAGHGNCDAV 887
Score = 57.0 bits (136), Expect = 3e-08
Identities = 90/361 (24%), Positives = 114/361 (31%), Gaps = 32/361 (8%)
Frame = +3
Query: 63 CGHVCAPVHQVGICVTECNV------DQDCGEGRQCTSNGCGRVC-SPVQQEDVGICVME 221
C + C P H C C+ D+ G R C + G C SP G+
Sbjct: 1074 CENECLPGHHGAGCRLNCSCLNGGTCDRLTGHCR-CPTGWTGDKCQSPCVSGMFGV---H 1129
Query: 222 CKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGHQCVRKGCGHVCAPVH 401
C+ C +G C +C P + CE C R G CA
Sbjct: 1130 CEEHCACRKGATCHHVTGACLCPPGWRGSHCEQACP------------RGWFGEACAQRC 1177
Query: 402 QVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCREDKDCGSGHQCVRK 581
G + C G T GC + C P + CEH C QC
Sbjct: 1178 HCPPGASCHHVSGECHCPPG--FTGPGCEQACQPGTFGKDCEHPC----------QC--P 1223
Query: 582 GCGHVCSPIPQVSICV-----TECNVDQDCGAGRRCTSNGCGRVCSPPQGG------GLC 728
G C P +C T+C Q C +GR GC ++C GG G C
Sbjct: 1224 GETWACHPASGACVCAAGYHGTDC--QQRCPSGR--YGPGCEQICKCLNGGTCDPATGAC 1279
Query: 729 VNRCRGNW---DCGAGEECIRKG--CGRVCSPAQ----EPVVGICV---DQCRRHWECGP 872
C + DC R G C VC+ Q +PV G C+ + H E G
Sbjct: 1280 Y--CPAGFLGADCSLACPQGRFGPSCAHVCTCGQGAACDPVSGTCICPPGKTGGHCERGC 1337
Query: 873 RMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSG--QKCCSHG 1046
GC H C+ GLC +G SCP G C H
Sbjct: 1338 PQDRFGKGCEHKCACRNG-----------------GLC-HATNGSCSCPLGWMGPHCEHA 1379
Query: 1047 C 1049
C
Sbjct: 1380 C 1380
Score = 54.3 bits (129), Expect = 2e-07
Identities = 84/350 (24%), Positives = 111/350 (31%), Gaps = 48/350 (13%)
Frame = +3
Query: 24 RDCGSGHQCVRKGCGHVCAPVHQVGICV-----TECNVDQDCGEGRQCTSNGCGRVCSPV 188
+DC H C G C P +C T+C Q C GR GC ++C +
Sbjct: 1214 KDCE--HPCQCPGETWACHPASGACVCAAGYHGTDCQ--QRCPSGRY--GPGCEQICKCL 1267
Query: 189 Q----QEDVGICVM--------------------ECKVDQDCGEGRRCTSNGCGRVCSPV 296
G C C CG+G C +C P
Sbjct: 1268 NGGTCDPATGACYCPAGFLGADCSLACPQGRFGPSCAHVCTCGQGAACDPVSGTCICPPG 1327
Query: 297 QQKEACEHQCREDR-DCGSGHQCV-RKG--C----GHVCAPV--------HQVDVGICVT 428
+ CE C +DR G H+C R G C G P+ H G
Sbjct: 1328 KTGGHCERGCPQDRFGKGCEHKCACRNGGLCHATNGSCSCPLGWMGPHCEHACPAGRYGA 1387
Query: 429 ECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCREDKDCGSGHQCVRKGC--GHVCS 602
C ++ C C +C P +ACE C GSG Q V + C G C
Sbjct: 1388 ACLLECSCQNNGSCEPTSGACLCGPGFYGQACEDTCPAGFH-GSGCQRVCE-CQQGAPCD 1445
Query: 603 PIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNRCRGNWDCGAGEECIR 782
P+ +C + C R C P G C+ +C +C G C
Sbjct: 1446 PVSGRCLCPAGFH------------GQFCERGCKPGFFGDGCLQQC----NCPTGVPCDP 1489
Query: 783 KGCGRVCSPAQEPVVGICVDQCRR-HWECGPRMRCVSTGCGHICSPAQDQ 929
+C P + C CRR + G +RC G G C P Q
Sbjct: 1490 ISGLCLCPPGRAGTT--CDLDCRRGRFGPGCALRC-DCGGGADCDPISGQ 1536
Score = 53.1 bits (126), Expect = 5e-07
Identities = 99/407 (24%), Positives = 133/407 (32%), Gaps = 57/407 (14%)
Frame = +3
Query: 6 HQCREDRDCGSGHQ--CV----------RKGCGHVCAPVHQVGICVTECNVDQDCGEGRQ 149
H C E + GH+ CV R GCG V Q V + Q +
Sbjct: 42 HVCAEQKLTLVGHRQPCVQAFSRVVPVWRSGCGQQAWCVGQERRTVYYMSYRQVYATEAR 101
Query: 150 CTSNGCGRVCSPVQQEDVGICVMECKVDQDCGEGRRC-TSNGCGRVCSPVQQKEACEHQC 326
C QE V EC EG C T G C P Q + C
Sbjct: 102 TVFRCCPGWSQKPGQEGCLSDVDECANANGGCEGPCCNTVGGFYCRCPPGYQLQGDGKTC 161
Query: 327 REDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQD---CGEGRQCT--SNGCGR 491
++ +C S + GC H C + C R+ D C CT + GC
Sbjct: 162 QDVDECRSHNG----GCQHRCVNTPGSYLCECKPGFRLHTDGRTCLAISSCTLGNGGCQH 217
Query: 492 VC---SPAQQREACEHQCREDKDCGSGHQCVRK--------GCGHVCSPIPQVSICVTEC 638
C + Q R C Q + +D G +CVR+ GC H C + ++ C C
Sbjct: 218 QCVQLTVTQHRCQCRPQYQLQED---GRRCVRRSPCADGNGGCMHTCQELRGLAHC--GC 272
Query: 639 NVDQDCGAGRRCTSN---------GCGRVCSPPQGGGLCVNRCRGNWDCGA-GEECIR-- 782
+ A R+ + C C QG CV C ++ GA G +C R
Sbjct: 273 HPGYQLAADRKACEDVDECALGLAQCAHGCLNTQGSFKCV--CHAGYELGADGRQCYRIE 330
Query: 783 -----------KGCGRVCSPAQEPVVGICVDQCRRHWECGPRMR-CVSTG-CGHICSPAQ 923
GC CS +C C R +E + C+ C + SP
Sbjct: 331 MEIVNSCEAGNGGCSHGCSHTSTGP--LCT--CPRGYELDEDQKTCIDIDDCAN--SPCC 384
Query: 924 DQV-EQRPG--KCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGH 1055
QV PG +C + C D C SG C H C +
Sbjct: 385 QQVCANTPGGYECSCFAGYRLNTDGCGCEDVDECASGHSGCEHHCSN 431
>ref|NP_001028368.2| NFX1-type zinc finger-containing protein 1 [Mus musculus].
Length = 1909
Score = 70.5 bits (171), Expect = 3e-12
Identities = 92/365 (25%), Positives = 125/365 (34%), Gaps = 20/365 (5%)
Frame = +3
Query: 54 RKGCGHVCAPV-------HQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGIC 212
R CGHVC H+ C+ C C +G +C N C + C P Q + V
Sbjct: 1288 RLACGHVCTRACHPYDSSHKEFQCMKPCQKVL-CQDGHRCP-NVCFQECQPCQVK-VPKI 1344
Query: 213 VMECKVDQ----DCGEGRRCTSNGCGRVCSPVQQKEACEHQCRED--RDCGSGHQCVRKG 374
+++C Q E C C ++ ++ C H C ED R C S V
Sbjct: 1345 ILKCGHKQMVPCSMSESEFCCQEPCSKI---LRCGHRCSHLCGEDCVRLC-SERVTVELK 1400
Query: 375 CGHV----CAPVHQVDVGI---CVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQ 533
CGH C V + G+ C T+C DCG G C + E C+
Sbjct: 1401 CGHSQLVKCGNVEDIKYGLPVKCTTKCDTTLDCGH----PCPGSCHSCFEGRFHERCQQP 1456
Query: 534 CREDKDCGSGHQCVRKGCGHVCSPIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPPQ 713
C+ C H+C ++ C C P C R C
Sbjct: 1457 CKRLLICS--HKC-QEPCTGECPP---------------------------CQRTCQ--- 1483
Query: 714 GGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVST 893
NRC +C +K CG +CSP EP CV +C +H++C +
Sbjct: 1484 ------NRC-------VHSQC-KKKCGELCSPCVEP----CVWRC-QHYQC-------TK 1517
Query: 894 GCGHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQTAV 1073
C C+ RP C V P + C C G C C C+
Sbjct: 1518 LCSEPCN--------RP-PCYV-PCTKLLACGHPCIG---------LCGEPCPKKCRVCQ 1558
Query: 1074 PDEKT 1088
PDE T
Sbjct: 1559 PDEVT 1563
Score = 49.7 bits (117), Expect = 5e-06
Identities = 56/212 (26%), Positives = 76/212 (35%), Gaps = 14/212 (6%)
Frame = +3
Query: 6 HQCRED--RDCGSGHQCVRKGCGHV----CAPVHQVGI-----CVTECNVDQDCGEGRQC 152
H C ED R C S V CGH C V + C T+C+ DCG
Sbjct: 1381 HLCGEDCVRLC-SERVTVELKCGHSQLVKCGNVEDIKYGLPVKCTTKCDTTLDCGHPCPG 1439
Query: 153 TSNGC--GRVCSPVQQEDVGICVMECKVDQDC-GEGRRCTSNGCGRVCSPVQQKEACEHQ 323
+ + C GR QQ + + K + C GE C P Q+ C+++
Sbjct: 1440 SCHSCFEGRFHERCQQPCKRLLICSHKCQEPCTGE------------CPPCQR--TCQNR 1485
Query: 324 CREDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSP 503
C H +K CG +C+P CV C +C C ++CS
Sbjct: 1486 C--------VHSQCKKKCGELCSP--------CVEPC--------VWRCQHYQCTKLCSE 1521
Query: 504 AQQREACEHQCREDKDCGSGHQCVRKGCGHVC 599
R C C + C GH C+ CG C
Sbjct: 1522 PCNRPPCYVPCTKLLAC--GHPCIGL-CGEPC 1550
>ref|NP_598682.2| nuclear transcription factor, X-box binding-like 1 [Mus musculus].
Length = 918
Score = 66.6 bits (161), Expect = 4e-11
Identities = 109/438 (24%), Positives = 144/438 (32%), Gaps = 86/438 (19%)
Frame = +3
Query: 6 HQCREDRDCGSGHQCVR---KGCGHVCAPVHQVGICVTEC-NVDQDCGEGRQCTSNGCGR 173
H+C G+ C R + C VC C + + DQ CG+ C ++ C +
Sbjct: 328 HKCENPCHAGNCQPCPRVSRQKC--VCGKKVAERSCASPVWHCDQVCGKTLPCGNHTCEQ 385
Query: 174 VC---------------SPVQQ--------EDVGICVMECKVDQDCGEGR---RCTSNGC 275
VC P Q+ EDV C C +CG R RC C
Sbjct: 386 VCHVGACGECPRSGKRSCPCQKSKFSLPCTEDVPTCGDSCDKILECGIHRCSQRCHRGPC 445
Query: 276 GRVCSPVQQKEA----------------CEHQCREDRDCGSGHQCVRKGCGHVCAPVHQV 407
C +K+ CE +C + RDC HQC RK C C P
Sbjct: 446 -ETCRQEVEKQCRCGKHTKRMPCHKPYLCETKCVKMRDC-QKHQCRRKCCPGNCPP---- 499
Query: 408 DVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCRE--DKDCGSGHQCVRK 581
DQ+CG C ++ C VC R +C + C E D C G+ V
Sbjct: 500 ----------CDQNCGRTLGCRNHKCPSVC----HRGSC-YPCPETVDVKCNCGNAKVTV 544
Query: 582 GCGHVCSPIPQVSICVTECNVDQDCGAG----RRCTSNGCGRVCSPPQG-----GGLCVN 734
CG + P C C+ C RC C P Q G LC
Sbjct: 545 PCGRERTTRPPK--CKELCSRPPTCHHASQEKHRCHFGPCPPCHQPCQKVLEKCGHLCPE 602
Query: 735 RCR--------------GNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQ--------- 845
C G W+ A I+ C P Q P+ C+ +
Sbjct: 603 SCHDQALVKQTGRHQPSGPWEQPAEPAFIQTAL--PCPPCQVPIPVECLGKHEVSPLPCH 660
Query: 846 ------CRRHWECGPRMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGD 1007
C+R CG +RC + C C +V+ GK P+ C E CS
Sbjct: 661 AVGPYSCKR--LCGRMLRCQNHTCMKECHKV-TEVDSSTGKNKAGPE--CFHCEEGCS-- 713
Query: 1008 DSCPSGQKCCSHGCGHSC 1061
S P+G C H C C
Sbjct: 714 KSRPAG---CPHPCVLPC 728
>ref|NP_080599.1| WAP four-disulfide core domain protein 2 precursor [Mus musculus].
Length = 174
Score = 64.3 bits (155), Expect = 2e-10
Identities = 39/129 (30%), Positives = 50/129 (38%), Gaps = 15/129 (11%)
Frame = +3
Query: 726 CVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGH 905
CV C + DC +C + GC VCS P G + E G + S G H
Sbjct: 45 CVLECTLDKDCADNRKCCQAGCSSVCSKPNGPSEGELSGTDTKLSETGTTTQ--SAGLDH 102
Query: 906 ICSPAQDQVEQRP--------------GKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSH 1043
P QV +P G CP + +GLC + C D C KCC +
Sbjct: 103 TTKPPGGQVSTKPPAVTREGLGVREKQGTCPSVDIPKLGLCEDQCQVDSQCSGNMKCCRN 162
Query: 1044 GCGH-SCQT 1067
GCG +C T
Sbjct: 163 GCGKMACTT 171
Score = 62.4 bits (150), Expect = 8e-10
Identities = 34/129 (26%), Positives = 49/129 (37%), Gaps = 31/129 (24%)
Frame = +3
Query: 420 CVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCREDKDCGSGHQCVRKGCGHVC 599
CV EC +D+DC + R+C GC VCS E + K +G G H
Sbjct: 45 CVLECTLDKDCADNRKCCQAGCSSVCSKPNGPSEGELSGTDTKLSETGTTTQSAGLDHTT 104
Query: 600 SP------------------------------IPQVSICVTECNVDQDCGAGRRCTSNGC 689
P IP++ +C +C VD C +C NGC
Sbjct: 105 KPPGGQVSTKPPAVTREGLGVREKQGTCPSVDIPKLGLCEDQCQVDSQCSGNMKCCRNGC 164
Query: 690 GRV-CSPPQ 713
G++ C+ P+
Sbjct: 165 GKMACTTPK 173
Score = 59.7 bits (143), Expect = 5e-09
Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 28/130 (21%)
Frame = +3
Query: 189 QQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGHQCVR 368
Q E + CV+EC +D+DC + R+C GC VCS E + + +G
Sbjct: 38 QLEPITDCVLECTLDKDCADNRKCCQAGCSSVCSKPNGPSEGELSGTDTKLSETGTTTQS 97
Query: 369 KGCGH----------------------------VCAPVHQVDVGICVTECRVDQDCGEGR 464
G H C V +G+C +C+VD C
Sbjct: 98 AGLDHTTKPPGGQVSTKPPAVTREGLGVREKQGTCPSVDIPKLGLCEDQCQVDSQCSGNM 157
Query: 465 QCTSNGCGRV 494
+C NGCG++
Sbjct: 158 KCCRNGCGKM 167
Score = 53.5 bits (127), Expect = 4e-07
Identities = 36/132 (27%), Positives = 48/132 (36%), Gaps = 30/132 (22%)
Frame = +3
Query: 75 CAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCS----PVQQE---------DVGICV 215
C + + CV EC +D+DC + R+C GC VCS P + E + G
Sbjct: 36 CPQLEPITDCVLECTLDKDCADNRKCCQAGCSSVCSKPNGPSEGELSGTDTKLSETGTTT 95
Query: 216 MECKVDQDC-----------------GEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDC 344
+D G G R C V P + CE QC+ D C
Sbjct: 96 QSAGLDHTTKPPGGQVSTKPPAVTREGLGVREKQGTCPSVDIP--KLGLCEDQCQVDSQC 153
Query: 345 GSGHQCVRKGCG 380
+C R GCG
Sbjct: 154 SGNMKCCRNGCG 165
>ref|NP_001075426.1| activated macrophage/microglia WAP domain protein precursor [Mus
musculus].
Length = 76
Score = 63.9 bits (154), Expect = 3e-10
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +3
Query: 936 QRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQTAV 1073
++PG CP ++G+C + CSGD SCP KCCS+ CGH C+T V
Sbjct: 30 EKPGACPKPSPESVGICVDQCSGDGSCPGNMKCCSNSCGHVCKTPV 75
>ref|XP_003086827.1| PREDICTED: extracellular peptidase inhibitor-like [Mus musculus].
Length = 76
Score = 63.9 bits (154), Expect = 3e-10
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +3
Query: 936 QRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQTAV 1073
++PG CP ++G+C + CSGD SCP KCCS+ CGH C+T V
Sbjct: 30 EKPGACPKPSPESVGICVDQCSGDGSCPGNMKCCSNSCGHVCKTPV 75
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 55,868,942
Number of extensions: 2044461
Number of successful extensions: 8993
Number of sequences better than 1.0e-05: 75
Number of HSP's gapped: 8046
Number of HSP's successfully gapped: 123
Length of query: 440
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 336
Effective length of database: 12,493,815
Effective search space: 4197921840
Effective search space used: 4197921840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012525
(1320 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_542181.1| WAP four-disulfide core domain protein 3 precur... 95 1e-19
Alignment gi|NP_061978.6| tenascin-X isoform 1 precursor [Homo sapiens]. 81 2e-15
Alignment gi|NP_941962.1| keratin-associated protein 10-7 [Homo sapiens]. 74 4e-13
Alignment gi|NP_002323.2| prolow-density lipoprotein receptor-related pro... 71 2e-12
Alignment gi|NP_941961.2| keratin-associated protein 10-6 [Homo sapiens]. 69 1e-11
Alignment gi|NP_004516.2| low-density lipoprotein receptor-related protei... 69 1e-11
Alignment gi|NP_066363.1| NFX1-type zinc finger-containing protein 1 [Hom... 68 2e-11
Alignment gi|NP_115821.2| multiple epidermal growth factor-like domains p... 67 4e-11
Alignment gi|NP_002151.2| tenascin precursor [Homo sapiens]. 64 2e-10
Alignment gi|NP_941960.1| keratin-associated protein 10-4 [Homo sapiens]. 64 2e-10
>ref|NP_542181.1| WAP four-disulfide core domain protein 3 precursor [Homo sapiens].
Length = 231
Score = 95.1 bits (235), Expect = 1e-19
Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 34/176 (19%)
Frame = +3
Query: 285 CSPVQQKEACEHQCREDRDCGSGHQCVRKGCGHVCAPVHQ---------VDVGICVTECR 437
C P K C+ C+ D C + +C GCG +C + + + C+ C
Sbjct: 33 CPP--HKNPCKELCQGDELCPAEQKCCTTGCGRICRDIPKGRKRDCPRVIRKQSCLKRCI 90
Query: 438 VDQDCGEGRQCTSNGCGRVCSPAQQREA--------------CEHQCREDKDCGSGHQCV 575
D+ C ++C + GC + C ++ CE C D C GH+C
Sbjct: 91 TDETCPGVKKCCTLGCNKSCVVPISKQKLAEFGGECPADPLPCEELCDGDASCPQGHKCC 150
Query: 576 RKGCGHVC-----------SPIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPP 710
GCG C P V +C+ C +D++C AG +C +GCGR C PP
Sbjct: 151 STGCGRTCLGDIEGGRGGDCPKVLVGLCIVGCVMDENCQAGEKCCKSGCGRFCVPP 206
Score = 92.0 bits (227), Expect = 1e-18
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 32/166 (19%)
Frame = +3
Query: 102 CVTECNVDQDCGEGRQCTSNGCGRVCSPV---QQEDV------GICVMECKVDQDCGEGR 254
C C D+ C ++C + GCGR+C + ++ D C+ C D+ C +
Sbjct: 40 CKELCQGDELCPAEQKCCTTGCGRICRDIPKGRKRDCPRVIRKQSCLKRCITDETCPGVK 99
Query: 255 RCTSNGCGRVC-SPVQQKE-------------ACEHQCREDRDCGSGHQCVRKGCGHVC- 389
+C + GC + C P+ +++ CE C D C GH+C GCG C
Sbjct: 100 KCCTLGCNKSCVVPISKQKLAEFGGECPADPLPCEELCDGDASCPQGHKCCSTGCGRTCL 159
Query: 390 --------APVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSP 503
+V VG+C+ C +D++C G +C +GCGR C P
Sbjct: 160 GDIEGGRGGDCPKVLVGLCIVGCVMDENCQAGEKCCKSGCGRFCVP 205
Score = 86.3 bits (212), Expect = 6e-17
Identities = 55/177 (31%), Positives = 76/177 (42%), Gaps = 26/177 (14%)
Frame = +3
Query: 609 PQVSICVTECNVDQDCGAGRRCTSNGCGRVCSP-PQGGGL----------CVNRCRGNWD 755
P + C C D+ C A ++C + GCGR+C P+G C+ RC +
Sbjct: 35 PHKNPCKELCQGDELCPAEQKCCTTGCGRICRDIPKGRKRDCPRVIRKQSCLKRCITDET 94
Query: 756 CGAGEECIRKGCGRVC---------------SPAQEPVVGICVDQCRRHWECGPRMRCVS 890
C ++C GC + C PA +P+ C + C C +C S
Sbjct: 95 CPGVKKCCTLGCNKSCVVPISKQKLAEFGGECPA-DPLP--CEELCDGDASCPQGHKCCS 151
Query: 891 TGCGHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSC 1061
TGCG C D R G CP K +GLC C D++C +G+KCC GCG C
Sbjct: 152 TGCGRTC--LGDIEGGRGGDCP---KVLVGLCIVGCVMDENCQAGEKCCKSGCGRFC 203
Score = 82.8 bits (203), Expect = 6e-16
Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 34/175 (19%)
Frame = +3
Query: 495 CSPAQQREACEHQCREDKDCGSGHQCVRKGCGHVCSPIPQ-----------VSICVTECN 641
C P + C+ C+ D+ C + +C GCG +C IP+ C+ C
Sbjct: 33 CPP--HKNPCKELCQGDELCPAEQKCCTTGCGRICRDIPKGRKRDCPRVIRKQSCLKRCI 90
Query: 642 VDQDCGAGRRCTSNGCGRVCSPP-------QGGGLCV-------NRCRGNWDCGAGEECI 779
D+ C ++C + GC + C P + GG C C G+ C G +C
Sbjct: 91 TDETCPGVKKCCTLGCNKSCVVPISKQKLAEFGGECPADPLPCEELCDGDASCPQGHKCC 150
Query: 780 RKGCGRVC---------SPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHICSP 917
GCGR C + +VG+C+ C C +C +GCG C P
Sbjct: 151 STGCGRTCLGDIEGGRGGDCPKVLVGLCIVGCVMDENCQAGEKCCKSGCGRFCVP 205
Score = 79.0 bits (193), Expect = 9e-15
Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 34/166 (20%)
Frame = +3
Query: 210 CVMECKVDQDCGEGRRCTSNGCGRVCSPVQQ-----------KEACEHQCREDRDCGSGH 356
C C+ D+ C ++C + GCGR+C + + K++C +C D C
Sbjct: 40 CKELCQGDELCPAEQKCCTTGCGRICRDIPKGRKRDCPRVIRKQSCLKRCITDETCPGVK 99
Query: 357 QCVRKGCGHVC-APVHQ-----------VDVGICVTECRVDQDCGEGRQCTSNGCGRVC- 497
+C GC C P+ + D C C D C +G +C S GCGR C
Sbjct: 100 KCCTLGCNKSCVVPISKQKLAEFGGECPADPLPCEELCDGDASCPQGHKCCSTGCGRTCL 159
Query: 498 ----------SPAQQREACEHQCREDKDCGSGHQCVRKGCGHVCSP 605
P C C D++C +G +C + GCG C P
Sbjct: 160 GDIEGGRGGDCPKVLVGLCIVGCVMDENCQAGEKCCKSGCGRFCVP 205
Score = 74.7 bits (182), Expect = 2e-13
Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 34/162 (20%)
Frame = +3
Query: 12 CREDRDCGSGHQCVRKGCGHVCAPVHQ-----------VGICVTECNVDQDCGEGRQCTS 158
C+ D C + +C GCG +C + + C+ C D+ C ++C +
Sbjct: 44 CQGDELCPAEQKCCTTGCGRICRDIPKGRKRDCPRVIRKQSCLKRCITDETCPGVKKCCT 103
Query: 159 NGCGRVC-SPVQQEDV----GICVME-------CKVDQDCGEGRRCTSNGCGRVC----- 287
GC + C P+ ++ + G C + C D C +G +C S GCGR C
Sbjct: 104 LGCNKSCVVPISKQKLAEFGGECPADPLPCEELCDGDASCPQGHKCCSTGCGRTCLGDIE 163
Query: 288 ------SPVQQKEACEHQCREDRDCGSGHQCVRKGCGHVCAP 395
P C C D +C +G +C + GCG C P
Sbjct: 164 GGRGGDCPKVLVGLCIVGCVMDENCQAGEKCCKSGCGRFCVP 205
Score = 68.2 bits (165), Expect = 2e-11
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 23/118 (19%)
Frame = +3
Query: 9 QCREDRDCGSGHQCVRKGCGHVCA-PVHQVGI-------------CVTECNVDQDCGEGR 146
+C D C +C GC C P+ + + C C+ D C +G
Sbjct: 88 RCITDETCPGVKKCCTLGCNKSCVVPISKQKLAEFGGECPADPLPCEELCDGDASCPQGH 147
Query: 147 QCTSNGCGRVC---------SPVQQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSP 293
+C S GCGR C + VG+C++ C +D++C G +C +GCGR C P
Sbjct: 148 KCCSTGCGRTCLGDIEGGRGGDCPKVLVGLCIVGCVMDENCQAGEKCCKSGCGRFCVP 205
Score = 61.6 bits (148), Expect = 2e-09
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Frame = +3
Query: 3 EHQCREDRDCGSGHQCVRKGCGHVC-----------APVHQVGICVTECNVDQDCGEGRQ 149
E C D C GH+C GCG C P VG+C+ C +D++C G +
Sbjct: 134 EELCDGDASCPQGHKCCSTGCGRTCLGDIEGGRGGDCPKVLVGLCIVGCVMDENCQAGEK 193
Query: 150 CTSNGCGRVCSP 185
C +GCGR C P
Sbjct: 194 CCKSGCGRFCVP 205
Score = 59.7 bits (143), Expect = 6e-09
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +3
Query: 801 CSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHICSPAQDQVEQRPGKCP-VLPKGTI 977
C P + P C + C+ C +C +TGCG IC +D + R CP V+ K +
Sbjct: 33 CPPHKNP----CKELCQGDELCPAEQKCCTTGCGRIC---RDIPKGRKRDCPRVIRKQS- 84
Query: 978 GLCAEFCSGDDSCPSGQKCCSHGCGHSCQTAVPDEK 1085
C + C D++CP +KCC+ GC SC + +K
Sbjct: 85 --CLKRCITDETCPGVKKCCTLGCNKSCVVPISKQK 118
>ref|NP_061978.6| tenascin-X isoform 1 precursor [Homo sapiens].
Length = 4242
Score = 81.3 bits (199), Expect = 2e-15
Identities = 110/414 (26%), Positives = 136/414 (32%), Gaps = 63/414 (15%)
Frame = +3
Query: 24 RDCGSGHQCVRKGCGHVCAPVHQ-----VGICVTECNVDQDCGEGR----------QCTS 158
RDC +C C +C + V C +CN C +GR C S
Sbjct: 375 RDCRGRGRCEDGEC--ICDTGYSGDDCGVRSCPGDCNQRGRCEDGRCVCWPGYTGTDCGS 432
Query: 159 NGCGRVCSPVQQEDVGICVMECKVD-QDCG--------EGR-RCTSNGC-------GRVC 287
C R C + + G+CV +DCG GR RC S C GR C
Sbjct: 433 RACPRDCRGRGRCENGVCVCNAGYSGEDCGVRSCPGDCRGRGRCESGRCMCWPGYTGRDC 492
Query: 288 SPVQQKEACEHQCREDRDC----------GSGHQCVRKGCGHVCAPVHQVDVGICVTECR 437
AC CR C +G C + C C + G+CV +
Sbjct: 493 G----TRACPGDCRGRGRCVDGRCVCNPGFTGEDCGSRRCPGDCRGHGLCEDGVCVCDAG 548
Query: 438 VDQDCGEGRQCTSNGCGRVCSPAQQ----REACEHQCREDKDCGSGHQCVRKGCGHVCSP 605
G C++ C C Q R CE D SG C + C + CS
Sbjct: 549 Y-----SGEDCSTRSCPGGCRGRGQCLDGRCVCE-------DGYSGEDCGVRQCPNDCSQ 596
Query: 606 --IPQVSICVT-ECNVDQDCGAGRRCTSNGCGR--------VCSPPQGGGLCVNR----- 737
+ Q +C+ E V +DC R C SN GR +C P G C R
Sbjct: 597 HGVCQDGVCICWEGYVSEDCSI-RTCPSNCHGRGRCEEGRCLCDPGYTGPTCATRMCPAD 655
Query: 738 CRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHICSP 917
CRG C G G G +EP C CGPR C + C +C
Sbjct: 656 CRGRGRCVQGVCLCHVGYGGEDCGQEEPPASACPG------GCGPRELCRAGQC--VC-- 705
Query: 918 AQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHG-CGHSCQTAVP 1076
VE G P I C C G C G C G G C VP
Sbjct: 706 ----VEGFRG-----PDCAIQTCPGDCRGRGECHDGSCVCKDGYAGEDCGEEVP 750
Score = 64.7 bits (156), Expect = 2e-10
Identities = 88/345 (25%), Positives = 113/345 (32%), Gaps = 16/345 (4%)
Frame = +3
Query: 78 APVHQVGICVTECNVDQDCGEGRQC-----TSNGCGRVCSPVQQEDVGICVMECKVDQDC 242
+P G C +CN C GR T CG P + G CV V +
Sbjct: 179 SPPSASGSCPDDCNDQGRCVRGRCVCFPGYTGPSCGWPSCPGDCQGRGRCVQGVCVCRAG 238
Query: 243 GEGRRCTSNGCGRVCSPVQQKEACEH-QCREDRDCGSGHQCVRKGCGHVCAPVHQVDVGI 419
G C+ C R CS Q+ CE +C D +G C + C C+ + + G
Sbjct: 239 FSGPDCSQRSCPRGCS---QRGRCEGGRCVCDPGY-TGDDCGMRSCPRGCSQRGRCENGR 294
Query: 420 CVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCREDKDCGSGHQCVRKGCGHVC 599
CV C G C C R CS QR C+ D C VC
Sbjct: 295 CV--CNPGYT---GEDCGVRSCPRGCS---QRGRCK-----DGRC-------------VC 328
Query: 600 SPIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNRCRGNWDCGAGEECI 779
P C T + DCG G RC C VC W GE+C
Sbjct: 329 DPGYTGEDCGTR-SCPWDCGEGGRCVDGRC--VC----------------WPGYTGEDCS 369
Query: 780 RKGCGRVCSPAQEPVVGICV-------DQCRRH---WECGPRMRCVSTGCGHICSPAQDQ 929
+ C R C G C+ D C +C R RC C +C P
Sbjct: 370 TRTCPRDCRGRGRCEDGECICDTGYSGDDCGVRSCPGDCNQRGRCEDGRC--VCWPGYTG 427
Query: 930 VEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHGCGHSCQ 1064
+ CP +G G C ++ SG+ C C C+
Sbjct: 428 TDCGSRACPRDCRGR-GRCENGVCVCNAGYSGEDCGVRSCPGDCR 471
>ref|NP_941962.1| keratin-associated protein 10-7 [Homo sapiens].
Length = 370
Score = 73.6 bits (179), Expect = 4e-13
Identities = 100/384 (26%), Positives = 126/384 (32%), Gaps = 34/384 (8%)
Frame = +3
Query: 12 CREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQ 191
C D GS C+ C C+ QV C C + C C S VC+PV
Sbjct: 9 CSSDLSYGS-RVCLPGSCDS-CSDSWQVDDCPESC-CEPPCCAPAPCLS----LVCTPVS 61
Query: 192 QEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSP-VQQKEACEHQCREDRDCGSGHQCVR 368
C + C E C S GC C+P Q+ +C+ C C CV
Sbjct: 62 YVSSPCCRVTC-------EPSPCQS-GCTSSCTPSCCQQSSCQLACCASSPCQQAC-CVP 112
Query: 369 KGCGHVCA-PVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCRED 545
C VC PV+ CV C D C + C S C SP QQ C C +
Sbjct: 113 VCCKTVCCKPVY------CVPVCSGDSSCCQQSSCQSACC--TSSPCQQ-ACCVPICCKP 163
Query: 546 KDCGSGHQCVRKG----------CGHVCSPIPQVSICVTECN---VDQDCGAGRRCTSNG 686
G C ++ C VC P P S C++ C Q CTS+
Sbjct: 164 VCSGISSSCCQQSSCVSCVSSPCCQAVCEPSPCQSGCISSCTPSCCQQSSCKPACCTSSP 223
Query: 687 CGRVCSPP--------------QGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPV 824
C + C P G C C + G C+ C VC PV
Sbjct: 224 CQQACCVPVCCKPVCCVPTCSDDSGSCCQPACCTSSQSQQG-CCVPVCCKPVCC---VPV 279
Query: 825 VGICVDQCRRHWECGPRMRCVSTGCGHICSPAQD-----QVEQRPGKCPVLPKGTIGLCA 989
C + C P C +T C C P+ + RP C +P CA
Sbjct: 280 CSGASTSCCQQSSCQP--ACCTTSC---CRPSSSVSLLCRPVCRPACCVPVP----SCCA 330
Query: 990 EFCSGDDSCPSGQKCCSHGCGHSC 1061
S SC C S C +C
Sbjct: 331 PTSSCQASCCRPASCVSLLCRPAC 354
Score = 58.5 bits (140), Expect = 1e-08
Identities = 72/259 (27%), Positives = 88/259 (33%), Gaps = 38/259 (14%)
Frame = +3
Query: 48 CVRKGCGHVCA-PVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQED-VGICVME 221
CV C VC PV+ CV C+ D C + C S C SP QQ V IC
Sbjct: 110 CVPVCCKTVCCKPVY----CVPVCSGDSSCCQQSSCQSACC--TSSPCQQACCVPIC--- 160
Query: 222 CK-----VDQDCGEGRRCTS-----------------NGCGRVCSP-VQQKEACEHQCRE 332
CK + C + C S +GC C+P Q+ +C+ C
Sbjct: 161 CKPVCSGISSSCCQQSSCVSCVSSPCCQAVCEPSPCQSGCISSCTPSCCQQSSCKPACCT 220
Query: 333 DRDCGSGHQCVRKGCGHVCA-PVHQVDVG-----ICVTECRVDQDCGEGRQCTSNGCGRV 494
C CV C VC P D G C T + Q C C C V
Sbjct: 221 SSPCQQAC-CVPVCCKPVCCVPTCSDDSGSCCQPACCTSSQSQQGCCVPVCCKPVCCVPV 279
Query: 495 CSPAQ----QREACEHQCREDKDCGSGHQCVRKGCGHVCSP---IPQVSICVTECNVDQD 653
CS A Q+ +C+ C C V C VC P +P S C +
Sbjct: 280 CSGASTSCCQQSSCQPACCTTSCCRPSSS-VSLLCRPVCRPACCVPVPSCCAPTSSCQAS 338
Query: 654 CGAGRRCTSNGCGRVCSPP 710
C C S C CS P
Sbjct: 339 CCRPASCVSLLCRPACSRP 357
>ref|NP_002323.2| prolow-density lipoprotein receptor-related protein 1 precursor [Homo
sapiens].
Length = 4544
Score = 71.2 bits (173), Expect = 2e-12
Identities = 95/405 (23%), Positives = 137/405 (33%), Gaps = 58/405 (14%)
Frame = +3
Query: 9 QCREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTE--------CNVDQDCGEGRQ----C 152
+C +CG G + C V +Q +T+ C+ D DC +G C
Sbjct: 3432 RCNGQDNCGDGED--ERDCPEVTCAPNQFQCSITKRCIPRVWVCDRDNDCVDGSDEPANC 3489
Query: 153 TSNGCGRVCSPVQQEDVGICV---MECKVDQDCGEGRRCTSNGCG-RVCSPVQ---QKEA 311
T CG + +D G C+ +C + DCG+G C R C P Q +
Sbjct: 3490 TQMTCG--VDEFRCKDSGRCIPARWKCDGEDDCGDGSDEPKEECDERTCEPYQFRCKNNR 3547
Query: 312 C---EHQCREDRDCGSG---HQCVRKGCGHV---CAPVHQVDVGICVT---ECRVDQDCG 455
C QC D DCG C + C CA G C+ +C D DC
Sbjct: 3548 CVPGRWQCDYDNDCGDNSDEESCTPRPCSESEFSCAN------GRCIAGRWKCDGDHDCA 3601
Query: 456 EGRQCTSNGCGRVCSPAQQREACEH------QCREDKDCGSGHQCVRKGCGHVCSPIPQV 617
+G C C Q + H +C D DC G G G P+ +
Sbjct: 3602 DGSD--EKDCTPRCDMDQFQCKSGHCIPLRWRCDADADCMDGSDEEACGTGVRTCPLDEF 3659
Query: 618 ----SIC---VTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVN---------RCRGN 749
++C +C+ + DCG C R PP C N +C G
Sbjct: 3660 QCNNTLCKPLAWKCDGEDDCGDNSDENPEECARFVCPPNRPFRCKNDRVCLWIGRQCDGT 3719
Query: 750 WDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTG--CGHI--CSP 917
+CG G + C P P + ++ + C RC+S+ C C
Sbjct: 3720 DNCGDGTD------EEDCEP---PTAHTTHCKDKKEFLC-RNQRCLSSSLRCNMFDDCGD 3769
Query: 918 AQDQVEQRPGKCPVLPKGT-IGLCAEFCSGDDSCPSGQKCCSHGC 1049
D+ + C + PK T A C + C +K C
Sbjct: 3770 GSDEED-----CSIDPKLTSCATNASICGDEARCVRTEKAAYCAC 3809
Score = 68.9 bits (167), Expect = 1e-11
Identities = 91/344 (26%), Positives = 115/344 (33%), Gaps = 57/344 (16%)
Frame = +3
Query: 12 CREDRDCGSGHQCVRKGCGHVCAPVHQV----GICVT---ECNVDQDCGEGRQCTSNGCG 170
C D DCG+ C P +Q G C+ C++D DCG+ +++
Sbjct: 914 CDGDNDCGNSEDESNATCSARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAY 973
Query: 171 RVCSPVQQE--DVGICV---MECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCRED 335
C P+ Q + G C+ C D DCG+ GC CS Q K
Sbjct: 974 PTCFPLTQFTCNNGRCININWRCDNDNDCGD--NSDEAGCSHSCSSTQFK---------- 1021
Query: 336 RDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGC-GRVCSPAQQ 512
C SG C P H C D DCG+ T C + P
Sbjct: 1022 --CNSGR----------CIPEHWT--------CDGDNDCGDYSDETHANCTNQATRPPGG 1061
Query: 513 REACEHQCR-------------EDKDC-GSGHQCVRKGCGHVCSPIPQVSI-----CVTE 635
E QCR D DC S + +G HVC P + C+++
Sbjct: 1062 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGVTHVCDPSVKFGCKDSARCISK 1121
Query: 636 ---CNVDQDC---GAGRRCTSNGC----------GRVCSPPQGGGLCVNRCRGNWDCGAG 767
C+ D DC C S C VC PP C GN DCG G
Sbjct: 1122 AWVCDGDNDCEDNSDEENCESLACRPPSHPCANNTSVCLPPD------KLCDGNDDCGDG 1175
Query: 768 -------EECI--RKGCGRVCSPAQEPVVGICVDQCRRHWECGP 872
++C GC CS A P GI V C E GP
Sbjct: 1176 SDEGELCDQCSLNNGGCSHNCSVA--PGEGI-VCSCPLGMELGP 1216
Score = 57.8 bits (138), Expect = 2e-08
Identities = 79/322 (24%), Positives = 110/322 (34%), Gaps = 56/322 (17%)
Frame = +3
Query: 114 CNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGI-CVME---CKVDQDCGEGRRCTSNGCGR 281
C+ + DC G T C + CS Q E C+ + C DCG+G ++ G+
Sbjct: 2715 CDKEDDCEHGEDETH--CNKFCSEAQFECQNHRCISKQWLCDGSDDCGDGSDEAAHCEGK 2772
Query: 282 VCSPVQQKEACEH-------QCREDRDCGSG-HQCVRKGC--------------GHVCAP 395
C P H C D+DC G + + GC C P
Sbjct: 2773 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTCDDREFMCQNRQCIP 2832
Query: 396 VHQVDVGICVTECRVDQDCGEGR----QCTSNGCGRV---CSPAQQREACEHQCREDKDC 554
H V C D+DC +G +C CG C+ + + + +C + DC
Sbjct: 2833 KHFV--------CDHDRDCADGSDESPECEYPTCGPSEFRCANGRCLSSRQWECDGENDC 2884
Query: 555 GSGHQCVRKG--C---GHVCSPIPQV----SICVTE---CNVDQDCGAG---RRCTSN-- 683
K C H C+ Q CV E CN DCG R C N
Sbjct: 2885 HDQSDEAPKNPHCTSQEHKCNASSQFLCSSGRCVAEALLCNGQDDCGDSSDERGCHINEC 2944
Query: 684 ------GCGRVCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQ 845
GC + C + G C RCR + K GR C+ VD+
Sbjct: 2945 LSRKLSGCSQDCEDLKIGFKC--RCRPGFRL--------KDDGRTCAD---------VDE 2985
Query: 846 CRRHWECGPRMRCVSTGCGHIC 911
C + C RC++T + C
Sbjct: 2986 CSTTFPCS--QRCINTHGSYKC 3005
>ref|NP_941961.2| keratin-associated protein 10-6 [Homo sapiens].
Length = 365
Score = 68.9 bits (167), Expect = 1e-11
Identities = 96/373 (25%), Positives = 120/373 (32%), Gaps = 20/373 (5%)
Frame = +3
Query: 12 CREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQ 191
C D GS C+ C C+ QV C C + C C S VC+PV
Sbjct: 9 CSSDLSYGS-RVCLPGSCDS-CSDSWQVDDCPESC-CEPPCCAPAPCLS----LVCTPVS 61
Query: 192 QEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSP-VQQKEACEHQCREDRDCGSGHQCVR 368
+ C + C E C S GC C+P Q+ +C+ C C CV
Sbjct: 62 RVSSPCCPVTC-------EPSPCQS-GCTSSCTPSCCQQSSCQLACCASSPCQQAC-CVP 112
Query: 369 KGCGHVCA-PVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCRED 545
C VC PV CV+ C D C + C S C SP QQ C C +
Sbjct: 113 VCCKTVCCKPV------CCVSVCCGDSSCCQQSSCQSACC--TSSPCQQ-ACCVPVCCKP 163
Query: 546 KDCGSGHQCVRKG----------CGHVCSPIPQVSICVTECN---VDQDCGAGRRCTSNG 686
G C ++ C VC P P S C + C Q CTS+
Sbjct: 164 VCSGISSSCCQQSSCVSCVSSPCCQAVCEPSPCQSGCTSSCTPSCCQQSSCQPTCCTSSP 223
Query: 687 CGRVCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRVCSPAQEPVVGICVDQCRRHWEC 866
C + C P CV C C ++ C PA C +H C
Sbjct: 224 CQQACCVPV---CCVPVCCVPTCSEDSSSCCQQSS---CQPA------CCTSSPCQHACC 271
Query: 867 GPRMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGD-----DSCPSGQK 1031
P ST C C + Q C LC C SC +
Sbjct: 272 VPVCSGASTSC---CQQSSCQPACCTASCCRPSSSVSLLCHPVCKSTCCVPVPSCGASAS 328
Query: 1032 CCSHGCGHSCQTA 1070
C C C+TA
Sbjct: 329 SCQPSC---CRTA 338
Score = 61.2 bits (147), Expect = 2e-09
Identities = 65/272 (23%), Positives = 85/272 (31%), Gaps = 39/272 (14%)
Frame = +3
Query: 30 CGSGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGCGRVC---SPVQQED 200
C + C + C VC + C C V CG+ C + C C SP QQ
Sbjct: 99 CCASSPCQQACCVPVCC---KTVCCKPVCCVSVCCGDSSCCQQSSCQSACCTSSPCQQ-- 153
Query: 201 VGICVMEC------KVDQDCGEGRRCTS-----------------NGCGRVCSP-VQQKE 308
CV C + C + C S +GC C+P Q+
Sbjct: 154 -ACCVPVCCKPVCSGISSSCCQQSSCVSCVSSPCCQAVCEPSPCQSGCTSSCTPSCCQQS 212
Query: 309 ACEHQCREDRDCGSGHQCVRKGCGHVCA-PVHQVDVGICVTECRVDQDCGEGRQCTSNGC 485
+C+ C C CV C VC P D C + C C C
Sbjct: 213 SCQPTCCTSSPCQQAC-CVPVCCVPVCCVPTCSEDSSSCCQQSSCQPACCTSSPCQHACC 271
Query: 486 GRVCSPAQ----QREACEHQCREDKDCGSG-------HQCVRKGCGHVCSPIPQVSICVT 632
VCS A Q+ +C+ C C H + C C P+P +
Sbjct: 272 VPVCSGASTSCCQQSSCQPACCTASCCRPSSSVSLLCHPVCKSTC---CVPVPSCGASAS 328
Query: 633 ECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLC 728
C C C S C +CS P LC
Sbjct: 329 SCQ--PSCCRTASCVSLLCRPMCSRPACYSLC 358
>ref|NP_004516.2| low-density lipoprotein receptor-related protein 2 precursor [Homo
sapiens].
Length = 4655
Score = 68.9 bits (167), Expect = 1e-11
Identities = 103/427 (24%), Positives = 148/427 (34%), Gaps = 74/427 (17%)
Frame = +3
Query: 3 EHQCREDRDCGSGHQCVRKGCG-HVCAPVHQV---GICVT---ECNVDQDCGEGRQ---C 152
E +C D DCG G + C H C+P G CV C+ DCG+G C
Sbjct: 2716 EWKCDNDNDCGDGSDEMESVCALHTCSPTAFTCANGRCVQYSYRCDYYNDCGDGSDEAGC 2775
Query: 153 TSNGC---------GRVCSPVQQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQK 305
C R C P +E + V C D + + + C C +
Sbjct: 2776 LFRDCNATTEFMCNNRRCIP--REFICNGVDNCH-DNNTSDEKNCPDRTCQSGYTKCHNS 2832
Query: 306 EAC---EHQCREDRDCGSGHQCVRKGC-GHVCAPVH-QVDVGICVTE---CRVDQDCGEG 461
C + C D DCG C H C+ Q G C+ + C + DC +
Sbjct: 2833 NICIPRVYLCDGDNDCGDNSDENPTYCTTHTCSSSEFQCASGRCIPQHWYCDQETDCFDA 2892
Query: 462 -----------RQCTSNGC---GRVCSPAQQREACEHQCREDKDCGSGHQCVRKGCG--- 590
R C ++ G C P++ ++ C + D HQC + C
Sbjct: 2893 SDEPASCGHSERTCLADEFKCDGGRCIPSEWICDGDNDCGDMSDEDKRHQCQNQNCSDSE 2952
Query: 591 HVC-SPIPQVSICVTE---CNVDQDCGAGRRCTSNGCGRVCSPPQ---GGGLCVN---RC 740
+C + P C+ + C+ D DC G N R CS + G GLC+ RC
Sbjct: 2953 FLCVNDRPPDRRCIPQSWVCDGDVDCTDGYDENQNCTRRTCSENEFTCGYGLCIPKIFRC 3012
Query: 741 RGNWDCGAGEE---CIRKGCGRVCSPAQEPVVGICVDQ---CRRHWECGPRMRCVSTGCG 902
+ DCG + C+ + C + Q G C+ + C +CG S
Sbjct: 3013 DRHNDCGDYSDERGCLYQTCQQNQFTCQN---GRCISKTFVCDEDNDCGDG----SDELM 3065
Query: 903 HICSPAQDQVEQRPGKCPVLPKGTIGLCAE---FCSGDDSC--PSGQKCCS--------- 1040
H+C + KC G C E C+ D C S +K C
Sbjct: 3066 HLCHTPEPTCPPHEFKC------DNGRCIEMMKLCNHLDDCLDNSDEKGCGINECHDPSI 3119
Query: 1041 HGCGHSC 1061
GC H+C
Sbjct: 3120 SGCDHNC 3126
Score = 59.3 bits (142), Expect = 8e-09
Identities = 90/374 (24%), Positives = 124/374 (33%), Gaps = 41/374 (10%)
Frame = +3
Query: 96 GICVTECNVDQDCGEGRQCTSNGCGRVCSPVQQEDVGICVME-----------CKVD--Q 236
GI N Q C + + GC +C+P C E C VD +
Sbjct: 2639 GINTVVKNQKQQCNNPCEQFNGGCSHICAPGPNGAECQCPHEGNWYLANNRKHCIVDNGE 2698
Query: 237 DCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGHQCVRKGCG-HVCAP-VHQVD 410
CG SN GR S E +C D DCG G + C H C+P
Sbjct: 2699 RCGASSFTCSN--GRCISE-------EWKCDNDNDCGDGSDEMESVCALHTCSPTAFTCA 2749
Query: 411 VGICVT---ECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCREDKDCGSGHQCVRK 581
G CV C DCG+G GC D + + C +
Sbjct: 2750 NGRCVQYSYRCDYYNDCGDGSD--EAGC----------------LFRDCNATTEFMCNNR 2791
Query: 582 GCGHVCSPIPQVSIC--VTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNR---CRG 746
C IP+ IC V C+ D + + C C + +C+ R C G
Sbjct: 2792 RC------IPREFICNGVDNCH-DNNTSDEKNCPDRTCQSGYTKCHNSNICIPRVYLCDG 2844
Query: 747 NWDCGAGEECIRKGC-GRVCSPAQ-EPVVGICVDQCRRHWECGPRMRCVS-----TGCGH 905
+ DCG + C CS ++ + G C+ Q HW C C CGH
Sbjct: 2845 DNDCGDNSDENPTYCTTHTCSSSEFQCASGRCIPQ---HWYCDQETDCFDASDEPASCGH 2901
Query: 906 I-CSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSC------PSGQKCCSHGCGHSCQ 1064
+ D+ + G+C +P I C GD+ C +C + C S
Sbjct: 2902 SERTCLADEFKCDGGRC--IPSEWI------CDGDNDCGDMSDEDKRHQCQNQNCSDSEF 2953
Query: 1065 TAV----PDEKTFP 1094
V PD + P
Sbjct: 2954 LCVNDRPPDRRCIP 2967
Score = 50.1 bits (118), Expect = 5e-06
Identities = 95/418 (22%), Positives = 129/418 (30%), Gaps = 85/418 (20%)
Frame = +3
Query: 63 CGHVCAPVHQVGICVTECNVDQDCG--EGRQCTSNGCGRVCSPVQQ---EDVGICVMECK 227
C H C PV N + CG G + SN P + E G+ CK
Sbjct: 984 CSHFCFPVP---------NFQRVCGCPYGMRLASNHLTCEGDPTNEPPTEQCGLFSFPCK 1034
Query: 228 VDQD------CGEGRRCTSNGCGRVCSPVQQKEA-----CEH--------QCREDRDCGS 350
+ C C N ++C + + C H +C + DC
Sbjct: 1035 NGRCVPNYYLCDGVDDCHDNSDEQLCGTLNNTCSSSAFTCGHGECIPAHWRCDKRNDCVD 1094
Query: 351 G---HQCVRKGCGHVCAPVHQVDVGICVTE---CRVDQDCGEGRQCTSNGCGRVCSPAQ- 509
G H C + D C+++ C D DCG+G + C P+Q
Sbjct: 1095 GSDEHNCPTHAPASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCNSTETCQPSQF 1154
Query: 510 --QREAC---EHQCREDKDCGSGHQCVRKGCGHVCSPIPQVSICVTECNVDQ-DCGAGRR 671
C C DKDC G V CV C Q C +G +
Sbjct: 1155 NCPNHRCIDLSFVCDGDKDCVDGSDEVG---------------CVLNCTASQFKCASGDK 1199
Query: 672 C--TSNGCGRV--CS-----------PP----------QGGGLCVN---RCRGNWDCGAG 767
C +N C V CS PP Q G+C+ C G+ DC G
Sbjct: 1200 CIGVTNRCDGVFDCSDNSDEAGCPTRPPGMCHSDEFQCQEDGICIPNFWECDGHPDCLYG 1259
Query: 768 EE----CIRKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHICSPAQDQVE 935
+ C+ K C G C+ R W C CG + +
Sbjct: 1260 SDEHNACVPKTCPSSYFHCDN---GNCI---HRAWLCDR-----DNDCGDMSD--EKDCP 1306
Query: 936 QRPGKCPVLPKGTIG--LCAEF---CSGDDSCPSGQ--------KCCSH---GCGHSC 1061
+P +CP +G +C C G CP+G CS GC H C
Sbjct: 1307 TQPFRCPSWQWQCLGHNICVNLSVVCDGIFDCPNGTDESPLCNGNSCSDFNGGCTHEC 1364
Score = 49.3 bits (116), Expect = 8e-06
Identities = 86/365 (23%), Positives = 120/365 (32%), Gaps = 51/365 (13%)
Frame = +3
Query: 9 QCREDRDCGSG---HQCVRKGC--------GHVCAPVHQVGICVTEC---NVDQDCG--- 137
QC DCG C + C C P + +C + ++DC
Sbjct: 3738 QCDGQNDCGDNSDEENCAPRECTESEFRCVNQQCIPSRWICDHYNDCGDNSDERDCEMRT 3797
Query: 138 ---EGRQCTSNGCGRVCSPVQQEDVGICVMECKVDQDCG----EGRRC--TSNGC-GRVC 287
E QCTS C V S ++ + C ++ + DC +G C T C VC
Sbjct: 3798 CHPEYFQCTSGHC--VHSELKCDGSADC-LDASDEADCPTRFPDGAYCQATMFECKNHVC 3854
Query: 288 SPVQQKEACEHQCREDRDCGSG-----HQCVRKGCG---------HVCAPVHQVDVGICV 425
P K C D DCG G H C+ C + C H+V G+
Sbjct: 3855 IPPYWK------CDGDDDCGDGSDEELHLCLDVPCNSPNRFRCDNNRCIYSHEVCNGV-- 3906
Query: 426 TECRVDQDCGEGRQCTSNGCGRVCSPAQQREACEHQCRE-DKDCGSGHQCVRKGCGHVCS 602
DCG+G T C R+ C E + CG+GH C
Sbjct: 3907 ------DDCGDGTDETEEHC---------RKPTPKPCTEYEYKCGNGH----------CI 3941
Query: 603 PIPQVSICVTECNVDQD---CGAG--RRCTSNGCGRVCSP-PQGGGLCVNRCRGNWDCGA 764
P V +C D C G R C N C + C+ +GG +C C A
Sbjct: 3942 PHDNVCDDADDCGDWSDELGCNKGKERTCAENICEQNCTQLNEGGFIC--------SCTA 3993
Query: 765 GEECI---RKGCGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHICSPAQDQVE 935
G E R C + +++C + C R +C+ +
Sbjct: 3994 GFETNVFDRTSC-------------LDINECEQFGTCPQHCRNTKGSYECVCADGFTSMS 4040
Query: 936 QRPGK 950
RPGK
Sbjct: 4041 DRPGK 4045
>ref|NP_066363.1| NFX1-type zinc finger-containing protein 1 [Homo sapiens].
Length = 1918
Score = 67.8 bits (164), Expect = 2e-11
Identities = 78/293 (26%), Positives = 106/293 (36%), Gaps = 43/293 (14%)
Frame = +3
Query: 54 RKGCGHVCAPV-------HQVGICVTECNVDQDCGEGRQCTSNGCGRVCSPVQ---QEDV 203
R GCGHVC H+ C+ C C EG +C C + C P Q + +
Sbjct: 1295 RLGCGHVCTRACHPYDSSHKEFQCMKPCQ-KVICQEGHRCPL-VCFQECQPCQVKVPKTI 1352
Query: 204 GICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCRED--RDCGS--------G 353
C E V E C C + ++ C H C ED + C G
Sbjct: 1353 PRCGHEQMVPCSVPESDFCCQEPCSK---SLRCGHRCSHPCGEDCVQLCSEMVTIKLKCG 1409
Query: 354 HQCVRKGCGHVCAPVHQVDVGICVTECRVDQDCGEGRQCTSNGC------GRVCSPAQQR 515
H K CGHV ++ + C T+C DCG + + C R P ++
Sbjct: 1410 HSQPVK-CGHVEGLLYGGLLVKCTTKCGTILDCGHPCPGSCHSCFEGRFHERCQQPCKRL 1468
Query: 516 EACEHQCRE---------DKDCGSG--HQCVRKGCGHVCSPIPQVSICVTECNVDQDCGA 662
C H+C+E + C + H +K CG +CSP CV C
Sbjct: 1469 LICSHKCQEPCIGECPPCQRTCQNRCVHSQCKKKCGELCSP------CVEPC-------- 1514
Query: 663 GRRCTSNGCGRVCSPPQGGGLCVNRCRGNWDCG------AGEECIRKGCGRVC 803
RC C ++CS P C C CG GE C +K C R+C
Sbjct: 1515 VWRCQHYQCTKLCSEPCNRPPCYVPCTKLLVCGHPCIGLCGEPCPKK-C-RIC 1565
>ref|NP_115821.2| multiple epidermal growth factor-like domains protein 11 precursor
[Homo sapiens].
Length = 1044
Score = 67.0 bits (162), Expect = 4e-11
Identities = 102/429 (23%), Positives = 134/429 (31%), Gaps = 73/429 (17%)
Frame = +3
Query: 30 CGSGHQCVRKGCGHVCAP-VHQVGICVTECNVDQDCGEGRQCTSNGCGRVCSP----VQQ 194
C +G + R C +CAP H G C + C G C +C+P V
Sbjct: 163 CAAGFRGWR--CEELCAPGTHGKG-----CQLPCQCRHGASCDPRAGECLCAPGYTGVYC 215
Query: 195 EDV---GICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCRED---RDCGSGH 356
E++ G C++ C G C C P C C ++C
Sbjct: 216 EELCPPGSHGAHCELRCPCQNGGTCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDC 275
Query: 357 QCVRKG-CGHVCAPVH------------QVDVGICVTECRVDQDCGEGRQCTSNGCGRVC 497
C G C HV H + G +C DC G QC+ C
Sbjct: 276 PCHHGGQCDHVTGQCHCTAGYMGDRCQEECPFGSFGFQCSQHCDCHNGGQCSPTTGACEC 335
Query: 498 SPAQQREACEHQ--------------CREDKDCGSGHQCVRKGC-------GHVCSPIPQ 614
P + C+ + C D D V C GH C+
Sbjct: 336 EPGYKGPRCQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCP 395
Query: 615 VSICVTECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNRC-RGNWDCGAGEECIRKGC 791
V C + C G C S G C+P G +C C G + C
Sbjct: 396 VGYYGDGCQLPCTCQNGADCHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNN- 454
Query: 792 GRVCSPAQEPVVGICVDQCRRHWE----------------CGPRMRCVSTGCGHICSPAQ 923
G CS PV G C C+ W+ C C + G CSP
Sbjct: 455 GGTCS----PVDGSCT--CKEGWQGLDCTLPCPSGTWGLNCNESCTCAN---GAACSPID 505
Query: 924 DQVEQRPG----KCPV-LPKGTIGL-CAEF--CSGDDSCP--SGQKCCSHG-CGHSCQTA 1070
PG C + P GT GL C+E CS D C +G CC G G C +
Sbjct: 506 GSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHADGCDPVTGHCCCLAGWTGIRCDST 565
Query: 1071 VPDEKTFPS 1097
P + P+
Sbjct: 566 CPPGRWGPN 574
Score = 56.2 bits (134), Expect = 7e-08
Identities = 101/435 (23%), Positives = 130/435 (29%), Gaps = 84/435 (19%)
Frame = +3
Query: 9 QCREDRDCGSGHQCVRKGCGHVCAP---------------VHQVGICVTECNVDQDCGEG 143
QC + DC +G QC C P +H G C C D D
Sbjct: 313 QCSQHCDCHNGGQCSPTTGACECEPGYKGPRCQERLCPEGLHGPG-CTLPCPCDADNTIS 371
Query: 144 RQCTSNGCGRVCSPV-------QQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQ 302
+ C C P + VG C++ C G C S G C+P
Sbjct: 372 CHPVTGAC--TCQPGWSGHHCNESCPVGYYGDGCQLPCTCQNGADCHSITGGCTCAPGFM 429
Query: 303 KEACEHQCREDR---DCGSGHQCVRKGCGHVCAPVHQVDVGICVTE-------------- 431
E C C +C S C G C+PV G C +
Sbjct: 430 GEVCAVSCAAGTYGPNCSSICSCNNGG---TCSPVD----GSCTCKEGWQGLDCTLPCPS 482
Query: 432 ------CRVDQDCGEGRQCTSNGCGRVCSPAQQREACEH---------QCREDKDCG--- 557
C C G C+ C+P + CE C E DC
Sbjct: 483 GTWGLNCNESCTCANGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHAD 542
Query: 558 -----SGHQCVRKG-----CGHVCSPIPQVSICVTECNVDQDCGAGRRCTSNGCGRVCSP 707
+GH C G C C P C C+ C G C+ C+P
Sbjct: 543 GCDPVTGHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCS----CENGGSCSPEDGSCECAP 598
Query: 708 PQGGGLCVNRC-RGNWDCGAGEECIRKGCGRVCSPAQEP---VVGICVDQCRRHWECGPR 875
G LC C G + G + C +C + P + GIC +C + G
Sbjct: 599 GFRGPLCQRICPPGFYGHGCAQPC------PLCVHSSRPCHHISGIC--ECLPGFS-GAL 649
Query: 876 MRCVSTG------CGHICSPAQD-QVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSG--Q 1028
V G C +CS A + G C P G + CS +CP G
Sbjct: 650 CNQVCAGGYFGQDCAQLCSCANNGTCSPIDGSCQCFP----GWIGKDCS--QACPPGFWG 703
Query: 1029 KCCSHGC----GHSC 1061
C H C G SC
Sbjct: 704 PACFHACSCHNGASC 718
Score = 56.2 bits (134), Expect = 7e-08
Identities = 70/298 (23%), Positives = 90/298 (30%), Gaps = 34/298 (11%)
Frame = +3
Query: 12 CREDRDCGSGHQCVRKGCGHVCAPVHQVGICVTEC---NVDQDCGEGRQCT-SNGC---- 167
C E C +G C C P C C +C E C+ ++GC
Sbjct: 489 CNESCTCANGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHADGCDPVT 548
Query: 168 GRVCSPVQQEDV--------GICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQ 323
G C + G C V C G C+ C+P + C+
Sbjct: 549 GHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCECAPGFRGPLCQRI 608
Query: 324 CREDRDCGSGHQCVRKG--CGHVCAPVHQVDVGICVTECR----------------VDQD 449
C GH C + C H P H + GIC EC QD
Sbjct: 609 CPPGF---YGHGCAQPCPLCVHSSRPCHHIS-GIC--ECLPGFSGALCNQVCAGGYFGQD 662
Query: 450 CGEGRQCTSNGCGRVCSPAQQREACEHQCREDKDCGSGHQCVRKGCGHVCSPIPQVSICV 629
C + C +NG CSP D C + K C C P C
Sbjct: 663 CAQLCSCANNG---TCSPI------------DGSCQCFPGWIGKDCSQACPPGFWGPACF 707
Query: 630 TECNVDQDCGAGRRCTSNGCGRVCSPPQGGGLCVNRCRGNWDCGAGEECIRKGCGRVC 803
C+ C G C++ C+P G C RC + K CGRVC
Sbjct: 708 HACS----CHNGASCSAEDGACHCTPGWTGLFCTQRCPAAF--------FGKDCGRVC 753
>ref|NP_002151.2| tenascin precursor [Homo sapiens].
Length = 2201
Score = 64.3 bits (155), Expect = 2e-10
Identities = 101/411 (24%), Positives = 138/411 (33%), Gaps = 75/411 (18%)
Frame = +3
Query: 57 KGCGHVCAPVHQVGICVT-----ECNVDQDCGEGRQC------TSNGCGRVCSPVQQEDV 203
+GCG VC P + C C++ C +G QC T C ++ P D
Sbjct: 170 EGCGCVCEPGWKGPNCSEPECPGNCHLRGRCIDG-QCICDDGFTGEDCSQLACPSDCNDQ 228
Query: 204 GICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCREDRDCGSGHQCVRKGCGH 383
G CV + + G C+ C CS ++ C D +G C + C +
Sbjct: 229 GKCVNGVCICFEGYAGADCSREICPVPCS--EEHGTCVDGLCVCHDGFAGDDCNKPLCLN 286
Query: 384 VCAPVHQVDVGICV-TECRVDQ--------------DCGEGRQCTSNGC-------GRVC 497
C + G CV EC D+ DC + +C + C G C
Sbjct: 287 NC-----YNRGRCVENECVCDEGFTGEDCSELICPNDCFDRGRCINGTCYCEEGFTGEDC 341
Query: 498 SPAQQREACEHQCREDKDCGSGHQCVRKGCGHV-CSPIPQVSICVTECN-----VDQDCG 659
+ C H C C G +G V CS C +C+ VD C
Sbjct: 342 G----KPTCPHACHTQGRCEEGQCVCDEGFAGVDCSE----KRCPADCHNRGRCVDGRCE 393
Query: 660 AGRRCTSNGCGRVCSPP--QGGGLCVNRCRGNWDCG---AGEECIRKGCGRVCSPAQEPV 824
T CG + P G G CVN G C GE+C + C C V
Sbjct: 394 CDDGFTGADCGELKCPNGCSGHGRCVN---GQCVCDEGYTGEDCSQLRCPNDCHSRGRCV 450
Query: 825 VGICV-DQCRRHWECGPRM---------RCVSTGCGHICSPAQDQVEQRPGKCP------ 956
G CV +Q + ++C RCV+ C +C + R +CP
Sbjct: 451 EGKCVCEQGFKGYDCSDMSCPNDCHQHGRCVNGMC--VCDDGYTGEDCRDRQCPRDCSNR 508
Query: 957 --------VLPKGTIGL-CAEF-----CSGDDSCPSGQKCCSHG-CGHSCQ 1064
V G G CAE C G C +GQ C G G C+
Sbjct: 509 GLCVDGQCVCEDGFTGPDCAELSCPNDCHGQGRCVNGQCVCHEGFMGKDCK 559
Score = 57.0 bits (136), Expect = 4e-08
Identities = 93/373 (24%), Positives = 120/373 (32%), Gaps = 68/373 (18%)
Frame = +3
Query: 132 CGEGRQCTSNGCGRVCSPVQQE---DVGICVMECKVDQDCGEGR-RCTSNGCGRVCSPVQ 299
C ++ GCG VC P + C C + C +G+ C G CS +
Sbjct: 161 CSGRGNFSTEGCGCVCEPGWKGPNCSEPECPGNCHLRGRCIDGQCICDDGFTGEDCSQL- 219
Query: 300 QKEACEHQCREDRDC----------GSGHQCVRKGCGHVCAPVHQVDV-GICV------- 425
AC C + C +G C R+ C C+ H V G+CV
Sbjct: 220 ---ACPSDCNDQGKCVNGVCICFEGYAGADCSREICPVPCSEEHGTCVDGLCVCHDGFAG 276
Query: 426 TECRVD---QDCGEGRQCTSNGCGRVCSPAQQREAC-EHQCREDKDCGSGHQCVRKGC-- 587
+C +C +C N C VC E C E C DC +C+ C
Sbjct: 277 DDCNKPLCLNNCYNRGRCVENEC--VCDEGFTGEDCSELIC--PNDCFDRGRCINGTCYC 332
Query: 588 -----GHVCSPIPQVSICVTECNVDQDCGAGR-RCTSNGCGRVCSPPQGGGLCVNRCR-- 743
G C C C+ C G+ C G CS + C NR R
Sbjct: 333 EEGFTGEDCGK----PTCPHACHTQGRCEEGQCVCDEGFAGVDCSEKRCPADCHNRGRCV 388
Query: 744 -GNWDCG---AGEECIRKGCGRVCSPAQEPVVGICV----------DQCRRHWECGPRMR 881
G +C G +C C CS V G CV Q R +C R R
Sbjct: 389 DGRCECDDGFTGADCGELKCPNGCSGHGRCVNGQCVCDEGYTGEDCSQLRCPNDCHSRGR 448
Query: 882 CVSTGC-------GHICSPAQDQVE-QRPGKCP----VLPKGTIG------LCAEFCSGD 1007
CV C G+ CS + + G+C V G G C CS
Sbjct: 449 CVEGKCVCEQGFKGYDCSDMSCPNDCHQHGRCVNGMCVCDDGYTGEDCRDRQCPRDCSNR 508
Query: 1008 DSCPSGQKCCSHG 1046
C GQ C G
Sbjct: 509 GLCVDGQCVCEDG 521
Score = 53.5 bits (127), Expect = 4e-07
Identities = 72/305 (23%), Positives = 100/305 (32%), Gaps = 31/305 (10%)
Frame = +3
Query: 240 CGEGRRCTSNGCGRVCSPVQQKEAC-EHQCREDRDCGSGHQCVRKGCGHVCAPVHQVDVG 416
C ++ GCG VC P + C E +C +C +C+ C +C D G
Sbjct: 161 CSGRGNFSTEGCGCVCEPGWKGPNCSEPEC--PGNCHLRGRCIDGQC--IC------DDG 210
Query: 417 ICVTECR---VDQDCGEGRQCTSNGC-------GRVCSPAQQREACEHQCREDKD-CGSG 563
+C DC + +C + C G CS RE C C E+ C G
Sbjct: 211 FTGEDCSQLACPSDCNDQGKCVNGVCICFEGYAGADCS----REICPVPCSEEHGTCVDG 266
Query: 564 HQCVRKG-CGHVCSPIPQVSICVTECN-----VDQDCGAGRRCTSNGCGRVCSPPQ--GG 719
G G C+ +C+ C V+ +C T C + P
Sbjct: 267 LCVCHDGFAGDDCNK----PLCLNNCYNRGRCVENECVCDEGFTGEDCSELICPNDCFDR 322
Query: 720 GLCVNRCRGNWDCGAGEECIRKGCGRVCSP----------AQEPVVGICVDQCRRHWECG 869
G C+N + GE+C + C C E G+ + R +C
Sbjct: 323 GRCINGTCYCEEGFTGEDCGKPTCPHACHTQGRCEEGQCVCDEGFAGVDCSEKRCPADCH 382
Query: 870 PRMRCVSTGCGHICSPAQDQVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCCSHG- 1046
R RCV C C + KCP CSG C +GQ C G
Sbjct: 383 NRGRCVDGRCE--CDDGFTGADCGELKCP-----------NGCSGHGRCVNGQCVCDEGY 429
Query: 1047 CGHSC 1061
G C
Sbjct: 430 TGEDC 434
Score = 52.8 bits (125), Expect = 7e-07
Identities = 66/232 (28%), Positives = 82/232 (35%), Gaps = 23/232 (9%)
Frame = +3
Query: 9 QCREDRDCGSGHQCVRKGC-------GHVCAPV------HQVGICVTECNVDQDCGEGRQ 149
Q R DC S +CV C G+ C+ + HQ G CV V D G
Sbjct: 436 QLRCPNDCHSRGRCVEGKCVCEQGFKGYDCSDMSCPNDCHQHGRCVNGMCVCDDGYTGED 495
Query: 150 CTSNGCGRVCSPVQQEDVGICVMECKVDQDCGEGRRCTSNGCGRVCSPVQQKEACEHQCR 329
C C R CS + G+CV V +D G C C
Sbjct: 496 CRDRQCPRDCS-----NRGLCVDGQCVCEDGFTGPDCAELSC------------------ 532
Query: 330 EDRDCGSGHQCVRKGCGHVCAPVHQVDVGICVTECRVDQDC-GEGRQCTSNGCGRVCSPA 506
DC +CV C VC H+ +G E R DC G+GR C C +C
Sbjct: 533 -PNDCHGQGRCVNGQC--VC---HEGFMGKDCKEQRCPSDCHGQGR-CVDGQC--ICHEG 583
Query: 507 QQREAC-EHQCREDKDCGSGHQCVRKGC-------GHVCSPI-PQVSICVTE 635
C +H C DC + QCV C G CS + P + VTE
Sbjct: 584 FTGLDCGQHSC--PSDCNNLGQCVSGRCICNEGYSGEDCSEVSPPKDLVVTE 633
>ref|NP_941960.1| keratin-associated protein 10-4 [Homo sapiens].
Length = 401
Score = 64.3 bits (155), Expect = 2e-10
Identities = 93/407 (22%), Positives = 122/407 (29%), Gaps = 65/407 (15%)
Frame = +3
Query: 36 SGHQCVRKGCGHVCAPVHQVGICVTECNVDQDCGEGRQCTSNGC-GRVCSPVQQEDVGIC 212
S C+ C C+ QV C C + C C C VC+PV + C
Sbjct: 11 SSRVCLPGSCDS-CSDSWQVDDCPESC-CEPPCCAPSCCAPAPCLSLVCTPVSRVSSPCC 68
Query: 213 VMECKVDQDCGEGRRCTSNGCGRVCSP-VQQKEACEHQCREDRDCGSGHQCVRKGCGHVC 389
+ C E C S GC C+P Q+ +C+ C C CV C VC
Sbjct: 69 PVTC-------EPSPCQS-GCTSSCTPSCCQQSSCQLACCASSPCQQAC-CVPVCCKTVC 119
Query: 390 APVHQVDVGICVTECRVDQDCGEGRQCTSNGCGRVC---SPAQQREACEHQCREDKDCGS 560
C C V CG+ C + C C SP QQ C C + G
Sbjct: 120 ----------CKPVCCVPVCCGDSSCCQQSSCQSACCTSSPCQQA-CCVPICCKPVCSGI 168
Query: 561 GHQCVRKG----------CGHVCSPIPQVSICVTECN---VDQDCGAGRRCTSNGCGRVC 701
C ++ C VC P P S C++ C Q CTS+ C + C
Sbjct: 169 SSSCCQQSSCVSCVSSPCCQAVCEPSPCQSGCISSCTPSCCQQSSCQPACCTSSSCQQAC 228
Query: 702 ----------------------------------SPPQGGGLCVNRCRGNWDC------- 758
S P CV C C
Sbjct: 229 CVPVCCKTVCCKPVCSEDSSSCCQQSSCQPACCTSSPCQQACCVPVCCKPVCCKPVGSVP 288
Query: 759 ---GAGEECIRKG-CGRVCSPAQEPVVGICVDQCRRHWECGPRMRCVSTGCGHICSPAQD 926
GA C ++ C C + + G CV C + C P S+ C C +
Sbjct: 289 ICSGASSLCCQQSSCQPACCTSSQSQQGCCVPVCCKPVSCVPVCSGASSSC---CQQSSC 345
Query: 927 QVEQRPGKCPVLPKGTIGLCAEFCSGDDSCPSGQKCC--SHGCGHSC 1061
Q C P ++ L C CC + C SC
Sbjct: 346 QPACCTTSC-CRPSSSVSLLCRPVCRPACCVPVPSCCAPTSSCQPSC 391
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,870,007
Number of extensions: 2434735
Number of successful extensions: 10935
Number of sequences better than 1.0e-05: 65
Number of HSP's gapped: 9990
Number of HSP's successfully gapped: 111
Length of query: 440
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 334
Effective length of database: 14,802,980
Effective search space: 4944195320
Effective search space used: 4944195320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012525
(1320 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892301.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 133 3e-28
>gb|GL892301.1| Sus scrofa unplaced genomic scaffold chrU_scaffold118
Length = 158
Score = 133 bits (67), Expect = 3e-28
Identities = 92/98 (93%), Gaps = 2/98 (2%)
Strand = Plus / Minus
Query: 1224 tctagaataacttggcttangggtagaattctgggcattgtttaaggaatagtgcttgca 1283
||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct: 158 tctagaataacttggcttaagggttgaattctggcaattgtttaaggaatagtgcttgca 99
Query: 1284 aaggatccttccttctg-ataaaacgacttctctggca 1320
|||||||||| |||||| ||||||||||||||||||||
Sbjct: 98 aaggatcctt-cttctgaataaaacgacttctctggca 62
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,122,062
Number of extensions: 256
Number of successful extensions: 256
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 1
Length of query: 1320
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1299
Effective length of database: 2,808,413,156
Effective search space: 3648128689644
Effective search space used: 3648128689644
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)