Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012527
(1174 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002688559.1| PREDICTED: jumonji domain containing 4, part... 169 5e-43
Alignment gi|XP_582558.5| PREDICTED: jumonji domain containing 4 isoform ... 166 4e-42
>ref|XP_002688559.1| PREDICTED: jumonji domain containing 4, partial [Bos taurus].
Length = 566
Score = 169 bits (427), Expect(3) = 5e-43
Identities = 78/90 (86%), Positives = 80/90 (88%)
Frame = +3
Query: 231 PSMDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVF 410
P MDR+ R FAESHFRGL+G L S V PKLD VDFIE PDSFSYADFFKGYLLPNLPCVF
Sbjct: 142 PGMDRETRVFAESHFRGLEGRLPSRVCPKLDRVDFIEKPDSFSYADFFKGYLLPNLPCVF 201
Query: 411 SSAFTEGWGSRRLWVTPSGKPNFDYLLQNY 500
SSAFTE WGSRRLWVTPSGKPNFDYLLQNY
Sbjct: 202 SSAFTEDWGSRRLWVTPSGKPNFDYLLQNY 231
Score = 23.1 bits (48), Expect(3) = 5e-43
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 86 TAAGRSGRWLQHRWQPLRVQHPLLLPQLFRRSQPP 190
+AAGR R + +QPL + +P+ RSQ P
Sbjct: 83 SAAGRLHRCFHYPYQPLCPRCSFDIPRAPPRSQQP 117
Score = 22.3 bits (46), Expect(3) = 5e-43
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 4 TSFFTS*FKEQISGNTETTF 63
TSFF S FKEQ N + F
Sbjct: 56 TSFFFSQFKEQRRRNAQVGF 75
Score = 121 bits (303), Expect = 1e-27
Identities = 52/55 (94%), Positives = 54/55 (98%)
Frame = +3
Query: 774 DVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDWHLCR 938
DVVVPVANCGV+EYNSNPKEHMPL+DYISYWKEYIQ NYSSSRGCLYLKDWHLCR
Sbjct: 232 DVVVPVANCGVQEYNSNPKEHMPLRDYISYWKEYIQANYSSSRGCLYLKDWHLCR 286
>ref|XP_582558.5| PREDICTED: jumonji domain containing 4 isoform 1, partial [Bos
taurus].
Length = 572
Score = 166 bits (419), Expect(3) = 4e-42
Identities = 77/90 (85%), Positives = 79/90 (87%)
Frame = +3
Query: 231 PSMDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVF 410
P MDR+ R FAESHFRGL+G L S V PKLD VDFIE PDSFSYADFFKGYLLPNLPCVF
Sbjct: 148 PGMDRETRVFAESHFRGLEGRLPSRVCPKLDRVDFIEKPDSFSYADFFKGYLLPNLPCVF 207
Query: 411 SSAFTEGWGSRRLWVTPSGKPNFDYLLQNY 500
SSAFTE WGSRRLWVT SGKPNFDYLLQNY
Sbjct: 208 SSAFTEDWGSRRLWVTSSGKPNFDYLLQNY 237
Score = 23.1 bits (48), Expect(3) = 4e-42
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 86 TAAGRSGRWLQHRWQPLRVQHPLLLPQLFRRSQPP 190
+AAGR R + +QPL + +P+ RSQ P
Sbjct: 89 SAAGRLHRCFHYPYQPLCPRCSFDIPRAPPRSQQP 123
Score = 22.3 bits (46), Expect(3) = 4e-42
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 4 TSFFTS*FKEQISGNTETTF 63
TSFF S FKEQ N + F
Sbjct: 62 TSFFFSQFKEQRRRNAQVGF 81
Score = 121 bits (303), Expect = 1e-27
Identities = 52/55 (94%), Positives = 54/55 (98%)
Frame = +3
Query: 774 DVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDWHLCR 938
DVVVPVANCGV+EYNSNPKEHMPL+DYISYWKEYIQ NYSSSRGCLYLKDWHLCR
Sbjct: 238 DVVVPVANCGVQEYNSNPKEHMPLRDYISYWKEYIQANYSSSRGCLYLKDWHLCR 292
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,045,771
Number of extensions: 1199168
Number of successful extensions: 3988
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3984
Number of HSP's successfully gapped: 8
Length of query: 391
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 287
Effective length of database: 14,240,222
Effective search space: 4086943714
Effective search space used: 4086943714
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012527
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012527
(1174 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532414.2| PREDICTED: similar to jumonji domain containing... 113 3e-25
>ref|XP_532414.2| PREDICTED: similar to jumonji domain containing 4 [Canis
familiaris].
Length = 375
Score = 113 bits (283), Expect = 3e-25
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +3
Query: 771 GDVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDWHLCR 938
G+VVVPVANCGVREYNSNPKE M L+DYISYWK+YIQG YSS RGCLYLKDWHLCR
Sbjct: 52 GEVVVPVANCGVREYNSNPKEQMLLRDYISYWKDYIQGGYSSPRGCLYLKDWHLCR 107
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,872,985
Number of extensions: 1232942
Number of successful extensions: 3918
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3915
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 286
Effective length of database: 15,374,224
Effective search space: 4397028064
Effective search space used: 4397028064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012527
(1174 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354211.1| PREDICTED: jmjC domain-containing protein 4 ... 192 3e-49
Alignment gi|XP_003123657.2| PREDICTED: jmjC domain-containing protein 4 ... 192 3e-49
>ref|XP_003354211.1| PREDICTED: jmjC domain-containing protein 4 isoform 2 [Sus scrofa].
Length = 408
Score = 192 bits (488), Expect = 3e-49
Identities = 91/99 (91%), Positives = 92/99 (92%)
Frame = +3
Query: 237 MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS 416
MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS
Sbjct: 1 MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS 60
Query: 417 AFTEGWGSRRLWVTPSGKPNFDYLLQNYGKD*ARVSQAG 533
AFTEGWGSRRLWVTPSGKPNFDYLLQNYG V+ G
Sbjct: 61 AFTEGWGSRRLWVTPSGKPNFDYLLQNYGDVVVPVANCG 99
Score = 130 bits (326), Expect = 2e-30
Identities = 58/65 (89%), Positives = 59/65 (90%)
Frame = +3
Query: 771 GDVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDWHLCR*RGP 950
GDVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDWHLCR
Sbjct: 89 GDVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDWHLCRDSSA 148
Query: 951 EHCFS 965
E F+
Sbjct: 149 ESVFT 153
>ref|XP_003123657.2| PREDICTED: jmjC domain-containing protein 4 isoform 1 [Sus scrofa].
Length = 424
Score = 192 bits (488), Expect = 3e-49
Identities = 91/99 (91%), Positives = 92/99 (92%)
Frame = +3
Query: 237 MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS 416
MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS
Sbjct: 1 MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS 60
Query: 417 AFTEGWGSRRLWVTPSGKPNFDYLLQNYGKD*ARVSQAG 533
AFTEGWGSRRLWVTPSGKPNFDYLLQNYG V+ G
Sbjct: 61 AFTEGWGSRRLWVTPSGKPNFDYLLQNYGDVVVPVANCG 99
Score = 130 bits (326), Expect = 2e-30
Identities = 58/65 (89%), Positives = 59/65 (90%)
Frame = +3
Query: 771 GDVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDWHLCR*RGP 950
GDVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDWHLCR
Sbjct: 89 GDVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDWHLCRDSSA 148
Query: 951 EHCFS 965
E F+
Sbjct: 149 ESVFT 153
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,032,515
Number of extensions: 772179
Number of successful extensions: 2590
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2587
Number of HSP's successfully gapped: 4
Length of query: 391
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 290
Effective length of database: 8,829,335
Effective search space: 2560507150
Effective search space used: 2560507150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012527
(1174 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848774.1| jmjC domain-containing protein 4 isoform 1 [Mus... 119 6e-27
Alignment gi|NP_001191997.1| jmjC domain-containing protein 4 isoform 2 [... 119 6e-27
>ref|NP_848774.1| jmjC domain-containing protein 4 isoform 1 [Mus musculus].
Length = 427
Score = 119 bits (297), Expect = 6e-27
Identities = 58/100 (58%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Frame = +3
Query: 237 MDRQMRAFAESHFRGLQGGL-SSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFS 413
MDR+ R FAE ++R L+ + S P V FI+ P++FSYADF KG+LLPNLPCVFS
Sbjct: 1 MDRETRTFAERYYRDLRDPVPSGGGGPTPSGVTFIQTPNAFSYADFVKGFLLPNLPCVFS 60
Query: 414 SAFTEGWGSRRLWVTPSGKPNFDYLLQNYGKD*ARVSQAG 533
SAFTEGWGSRR WVT GKP+F+YL Q YG V+ G
Sbjct: 61 SAFTEGWGSRRRWVTSEGKPDFEYLQQKYGDAVVPVANCG 100
Score = 118 bits (295), Expect = 1e-26
Identities = 50/56 (89%), Positives = 53/56 (94%)
Frame = +3
Query: 771 GDVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDWHLCR 938
GD VVPVANCGVREYNSNPKEHM +DYISYWK+YIQG+YSSSRGCLYLKDWHLCR
Sbjct: 90 GDAVVPVANCGVREYNSNPKEHMSFRDYISYWKDYIQGSYSSSRGCLYLKDWHLCR 145
>ref|NP_001191997.1| jmjC domain-containing protein 4 isoform 2 [Mus musculus].
Length = 415
Score = 119 bits (297), Expect = 6e-27
Identities = 58/100 (58%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Frame = +3
Query: 237 MDRQMRAFAESHFRGLQGGL-SSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFS 413
MDR+ R FAE ++R L+ + S P V FI+ P++FSYADF KG+LLPNLPCVFS
Sbjct: 1 MDRETRTFAERYYRDLRDPVPSGGGGPTPSGVTFIQTPNAFSYADFVKGFLLPNLPCVFS 60
Query: 414 SAFTEGWGSRRLWVTPSGKPNFDYLLQNYGKD*ARVSQAG 533
SAFTEGWGSRR WVT GKP+F+YL Q YG V+ G
Sbjct: 61 SAFTEGWGSRRRWVTSEGKPDFEYLQQKYGDAVVPVANCG 100
Score = 118 bits (295), Expect = 1e-26
Identities = 50/56 (89%), Positives = 53/56 (94%)
Frame = +3
Query: 771 GDVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDWHLCR 938
GD VVPVANCGVREYNSNPKEHM +DYISYWK+YIQG+YSSSRGCLYLKDWHLCR
Sbjct: 90 GDAVVPVANCGVREYNSNPKEHMSFRDYISYWKDYIQGSYSSSRGCLYLKDWHLCR 145
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,227,862
Number of extensions: 1030855
Number of successful extensions: 3189
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3185
Number of HSP's successfully gapped: 4
Length of query: 391
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 288
Effective length of database: 12,523,851
Effective search space: 3606869088
Effective search space used: 3606869088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012527
(1174 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001154937.1| jmjC domain-containing protein 4 isoform 2 [... 120 3e-27
Alignment gi|NP_075383.2| jmjC domain-containing protein 4 isoform 1 [Hom... 120 3e-27
>ref|NP_001154937.1| jmjC domain-containing protein 4 isoform 2 [Homo sapiens].
Length = 447
Score = 120 bits (300), Expect = 3e-27
Identities = 58/99 (58%), Positives = 71/99 (71%)
Frame = +3
Query: 237 MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS 416
MDR+ RA A+SHFRGL G V V F+ P +FSYADF +G+LLPNLPCVFSS
Sbjct: 47 MDRETRALADSHFRGL-GVDVPGVGQAPGRVAFVSEPGAFSYADFVRGFLLPNLPCVFSS 105
Query: 417 AFTEGWGSRRLWVTPSGKPNFDYLLQNYGKD*ARVSQAG 533
AFT+GWGSRR WVTP+G+P+FD+LL+ YG V+ G
Sbjct: 106 AFTQGWGSRRRWVTPAGRPDFDHLLRTYGDVVVPVANCG 144
Score = 115 bits (287), Expect = 1e-25
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +3
Query: 771 GDVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDWHLCR 938
GDVVVPVANCGV+EYNSNPKEHM L+DYI+YWKEYIQ YSS RGCLYLKDWHLCR
Sbjct: 134 GDVVVPVANCGVQEYNSNPKEHMTLRDYITYWKEYIQAGYSSPRGCLYLKDWHLCR 189
>ref|NP_075383.2| jmjC domain-containing protein 4 isoform 1 [Homo sapiens].
Length = 463
Score = 120 bits (300), Expect = 3e-27
Identities = 58/99 (58%), Positives = 71/99 (71%)
Frame = +3
Query: 237 MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS 416
MDR+ RA A+SHFRGL G V V F+ P +FSYADF +G+LLPNLPCVFSS
Sbjct: 47 MDRETRALADSHFRGL-GVDVPGVGQAPGRVAFVSEPGAFSYADFVRGFLLPNLPCVFSS 105
Query: 417 AFTEGWGSRRLWVTPSGKPNFDYLLQNYGKD*ARVSQAG 533
AFT+GWGSRR WVTP+G+P+FD+LL+ YG V+ G
Sbjct: 106 AFTQGWGSRRRWVTPAGRPDFDHLLRTYGDVVVPVANCG 144
Score = 115 bits (287), Expect = 1e-25
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +3
Query: 771 GDVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDWHLCR 938
GDVVVPVANCGV+EYNSNPKEHM L+DYI+YWKEYIQ YSS RGCLYLKDWHLCR
Sbjct: 134 GDVVVPVANCGVQEYNSNPKEHMTLRDYITYWKEYIQAGYSSPRGCLYLKDWHLCR 189
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,190,089
Number of extensions: 1220695
Number of successful extensions: 4126
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4118
Number of HSP's successfully gapped: 4
Length of query: 391
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 286
Effective length of database: 14,835,944
Effective search space: 4243079984
Effective search space used: 4243079984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012527
(1174 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 2280 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 2280 bits (1150), Expect = 0.0
Identities = 1166/1172 (99%)
Strand = Plus / Plus
Query: 3 tacttcctttttcacttcctagtttaaagaacagataagtgggaatacagaaaccacatt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54412692 tacttcctttttcacttcctagtttaaagaacagataagtgggaatacagaaaccacatt 54412751
Query: 63 ctgggttcctgaccttctgccggacggcagccgggagatctggccgctggctccagcatc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54412752 ctgggttcctgaccttctgccggacggcagccgggagatctggccgctggctccagcatc 54412811
Query: 123 gctggcagcccctccgcgtccagcaccccctcctactcccgcagctcttccgacgctccc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54412812 gctggcagcccctccgcgtccagcaccccctcctactcccgcagctcttccgacgctccc 54412871
Query: 183 agcccccctgttcccagcagaccctcacgcaacggactctgagcctagcccagcatggac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54412872 agcccccctgttcccagcagaccctcacgcaacggactctgagcctagcccagcatggac 54412931
Query: 243 agacagatgcgcgcatttgccgagagccacttccgaggcctccagggaggtctctccagc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54412932 agacagatgcgcgcatttgccgagagccacttccgaggcctccagggaggtctctccagc 54412991
Query: 303 aatgtcagcccgaaactggaccacgtggacttcatagagaatccagactccttttcctac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54412992 aatgtcagcccgaaactggaccacgtggacttcatagagaatccagactccttttcctac 54413051
Query: 363 gccgacttcttcaagggctatctgctccccaacttgccctgtgttttctccagcgctttc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413052 gccgacttcttcaagggctatctgctccccaacttgccctgtgttttctccagcgctttc 54413111
Query: 423 accgagggctggggcagcaggaggctctgggtgacgccaagcggaaagcccaattttgat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413112 accgagggctggggcagcaggaggctctgggtgacgccaagcggaaagcccaattttgat 54413171
Query: 483 tatctgcttcagaactatggtaaggactgagcgcgagtgtcccaggcaggaacaccttgg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413172 tatctgcttcagaactatggtaaggactgagcgcgagtgtcccaggcaggaacaccttgg 54413231
Query: 543 aatgcagcacaaaactccagccagtgtcctttgaccctcgccctacctatattcccttag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413232 aatgcagcacaaaactccagccagtgtcctttgaccctcgccctacctatattcccttag 54413291
Query: 603 gtcagactgtgagggtgcaaatgaggggagccacaagaggacttgagggaggcagggaac 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413292 gtcagactgtgagggtgcaaatgaggggagccacaagaggacttgagggaggcagggaac 54413351
Query: 663 atgagttaatccccagaggaattcttctggagacggtgtagcaatgagttggagggtgga 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413352 atgagttaatccccagaggaattcttctggagacggtgtagcaatgagttggagggtgga 54413411
Query: 723 cagggtggaggactctcagaaaagtttgtgcctgaccctttcctttcaggagatgtggtt 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413412 cagggtggaggactctcagaaaagtttgtgcctgaccctttcctttcaggagatgtggtt 54413471
Query: 783 gtacctgttgcaaactgtggggtgagggaatacaactccaaccccaaagaacacatgccc 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413472 gtacctgttgcaaactgtggggtgagggaatacaactccaaccccaaagaacacatgccc 54413531
Query: 843 ctcaaagactacatcagctactggaaagagtacattcagggaaactactcatcttcacgg 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413532 ctcaaagactacatcagctactggaaagagtacattcagggaaactactcatcttcacgg 54413591
Query: 903 ggctgtctctatctcaaagactggcatctgtgcaggtaaaggggcccagaacactgcttt 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413592 ggctgtctctatctcaaagactggcatctgtgcaggtaaaggggcccagaacactgcttt 54413651
Query: 963 tcctagtcatgagtgaggaacttgtcttttctccagttatgaatttaatcagtgtaaaaa 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413652 tcctagtcatgagtgaggaacttgtcttttctccagttatgaatttaatcagtgtaaaaa 54413711
Query: 1023 acccactctcttcagcctggttggaatgtcattctctccaatcatggccatctcaccatg 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413712 acccactctcttcagcctggttggaatgtcattctctccaatcatggccatctcaccatg 54413771
Query: 1083 cctgcncggggttggctgcttgaagaatgtgggcacctctggcagaagctcagatggcct 1142
||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct: 54413772 cctgcgcggggttggctgcgtgaggaatgtgggcacctctggcagaggctcagatggcct 54413831
Query: 1143 gtgantacctaactcttttttgtcacggtttt 1174
|||| ||||||||||||||||||||| |||||
Sbjct: 54413832 gtgattacctaactcttttttgtcactgtttt 54413863
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,914,007
Number of extensions: 198
Number of successful extensions: 198
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 1
Length of query: 1174
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1153
Effective length of database: 2,808,413,156
Effective search space: 3238100368868
Effective search space used: 3238100368868
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)