Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012528
(1010 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002688559.1| PREDICTED: jumonji domain containing 4, part... 281 3e-77
Alignment gi|XP_582558.5| PREDICTED: jumonji domain containing 4 isoform ... 278 3e-76
>ref|XP_002688559.1| PREDICTED: jumonji domain containing 4, partial [Bos taurus].
Length = 566
Score = 281 bits (718), Expect(3) = 3e-77
Identities = 130/146 (89%), Positives = 134/146 (91%)
Frame = +2
Query: 239 PSMDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVF 418
P MDR+ R FAESHFRGL+G L S V PKLD VDFIE PDSFSYADFFKGYLLPNLPCVF
Sbjct: 142 PGMDRETRVFAESHFRGLEGRLPSRVCPKLDRVDFIEKPDSFSYADFFKGYLLPNLPCVF 201
Query: 419 SSAFTEGWGSRRLWVTPSGKPNFDYLLQNYGDVVVPVANCGVREYNSNPKEHMPLKDYIS 598
SSAFTE WGSRRLWVTPSGKPNFDYLLQNY DVVVPVANCGV+EYNSNPKEHMPL+DYIS
Sbjct: 202 SSAFTEDWGSRRLWVTPSGKPNFDYLLQNY-DVVVPVANCGVQEYNSNPKEHMPLRDYIS 260
Query: 599 YWKEYIQGNYSSSRGCLYLKDWHLCR 676
YWKEYIQ NYSSSRGCLYLKDWHLCR
Sbjct: 261 YWKEYIQANYSSSRGCLYLKDWHLCR 286
Score = 25.0 bits (53), Expect(3) = 3e-77
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 6 SNTSFFTS*FKEQISGNTETTF 71
+NTSFF S FKEQ N + F
Sbjct: 54 ANTSFFFSQFKEQRRRNAQVGF 75
Score = 23.1 bits (48), Expect(3) = 3e-77
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 94 TAAGRSGRWLQHRWQPLRVQHPLLLPQLFRRSQPP 198
+AAGR R + +QPL + +P+ RSQ P
Sbjct: 83 SAAGRLHRCFHYPYQPLCPRCSFDIPRAPPRSQQP 117
>ref|XP_582558.5| PREDICTED: jumonji domain containing 4 isoform 1, partial [Bos
taurus].
Length = 572
Score = 278 bits (710), Expect(3) = 3e-76
Identities = 129/146 (88%), Positives = 133/146 (91%)
Frame = +2
Query: 239 PSMDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVF 418
P MDR+ R FAESHFRGL+G L S V PKLD VDFIE PDSFSYADFFKGYLLPNLPCVF
Sbjct: 148 PGMDRETRVFAESHFRGLEGRLPSRVCPKLDRVDFIEKPDSFSYADFFKGYLLPNLPCVF 207
Query: 419 SSAFTEGWGSRRLWVTPSGKPNFDYLLQNYGDVVVPVANCGVREYNSNPKEHMPLKDYIS 598
SSAFTE WGSRRLWVT SGKPNFDYLLQNY DVVVPVANCGV+EYNSNPKEHMPL+DYIS
Sbjct: 208 SSAFTEDWGSRRLWVTSSGKPNFDYLLQNY-DVVVPVANCGVQEYNSNPKEHMPLRDYIS 266
Query: 599 YWKEYIQGNYSSSRGCLYLKDWHLCR 676
YWKEYIQ NYSSSRGCLYLKDWHLCR
Sbjct: 267 YWKEYIQANYSSSRGCLYLKDWHLCR 292
Score = 25.0 bits (53), Expect(3) = 3e-76
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 6 SNTSFFTS*FKEQISGNTETTF 71
+NTSFF S FKEQ N + F
Sbjct: 60 ANTSFFFSQFKEQRRRNAQVGF 81
Score = 23.1 bits (48), Expect(3) = 3e-76
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 94 TAAGRSGRWLQHRWQPLRVQHPLLLPQLFRRSQPP 198
+AAGR R + +QPL + +P+ RSQ P
Sbjct: 89 SAAGRLHRCFHYPYQPLCPRCSFDIPRAPPRSQQP 123
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,108,820
Number of extensions: 1047276
Number of successful extensions: 3531
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3526
Number of HSP's successfully gapped: 6
Length of query: 336
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,273,310
Effective search space: 3325681230
Effective search space used: 3325681230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012528
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012528
(1010 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532414.2| PREDICTED: similar to jumonji domain containing... 113 3e-25
>ref|XP_532414.2| PREDICTED: similar to jumonji domain containing 4 [Canis
familiaris].
Length = 375
Score = 113 bits (283), Expect = 3e-25
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +2
Query: 509 GDVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDWHLCR 676
G+VVVPVANCGVREYNSNPKE M L+DYISYWK+YIQG YSS RGCLYLKDWHLCR
Sbjct: 52 GEVVVPVANCGVREYNSNPKEQMLLRDYISYWKDYIQGGYSSPRGCLYLKDWHLCR 107
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,692,491
Number of extensions: 1077128
Number of successful extensions: 3633
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3630
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 233
Effective length of database: 15,440,896
Effective search space: 3597728768
Effective search space used: 3597728768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012528
(1010 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354211.1| PREDICTED: jmjC domain-containing protein 4 ... 315 3e-86
Alignment gi|XP_003123657.2| PREDICTED: jmjC domain-containing protein 4 ... 315 3e-86
>ref|XP_003354211.1| PREDICTED: jmjC domain-containing protein 4 isoform 2 [Sus scrofa].
Length = 408
Score = 315 bits (807), Expect = 3e-86
Identities = 146/153 (95%), Positives = 147/153 (96%)
Frame = +2
Query: 245 MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS 424
MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS
Sbjct: 1 MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS 60
Query: 425 AFTEGWGSRRLWVTPSGKPNFDYLLQNYGDVVVPVANCGVREYNSNPKEHMPLKDYISYW 604
AFTEGWGSRRLWVTPSGKPNFDYLLQNYGDVVVPVANCGVREYNSNPKEHMPLKDYISYW
Sbjct: 61 AFTEGWGSRRLWVTPSGKPNFDYLLQNYGDVVVPVANCGVREYNSNPKEHMPLKDYISYW 120
Query: 605 KEYIQGNYSSSRGCLYLKDWHLCR*RGPEHCFS 703
KEYIQGNYSSSRGCLYLKDWHLCR E F+
Sbjct: 121 KEYIQGNYSSSRGCLYLKDWHLCRDSSAESVFT 153
>ref|XP_003123657.2| PREDICTED: jmjC domain-containing protein 4 isoform 1 [Sus scrofa].
Length = 424
Score = 315 bits (807), Expect = 3e-86
Identities = 146/153 (95%), Positives = 147/153 (96%)
Frame = +2
Query: 245 MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS 424
MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS
Sbjct: 1 MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS 60
Query: 425 AFTEGWGSRRLWVTPSGKPNFDYLLQNYGDVVVPVANCGVREYNSNPKEHMPLKDYISYW 604
AFTEGWGSRRLWVTPSGKPNFDYLLQNYGDVVVPVANCGVREYNSNPKEHMPLKDYISYW
Sbjct: 61 AFTEGWGSRRLWVTPSGKPNFDYLLQNYGDVVVPVANCGVREYNSNPKEHMPLKDYISYW 120
Query: 605 KEYIQGNYSSSRGCLYLKDWHLCR*RGPEHCFS 703
KEYIQGNYSSSRGCLYLKDWHLCR E F+
Sbjct: 121 KEYIQGNYSSSRGCLYLKDWHLCRDSSAESVFT 153
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,223,403
Number of extensions: 675284
Number of successful extensions: 2369
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2367
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,879,129
Effective search space: 2104353573
Effective search space used: 2104353573
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012528
(1010 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848774.1| jmjC domain-containing protein 4 isoform 1 [Mus... 229 3e-60
Alignment gi|NP_001191997.1| jmjC domain-containing protein 4 isoform 2 [... 229 3e-60
>ref|NP_848774.1| jmjC domain-containing protein 4 isoform 1 [Mus musculus].
Length = 427
Score = 229 bits (584), Expect = 3e-60
Identities = 105/145 (72%), Positives = 119/145 (82%), Gaps = 1/145 (0%)
Frame = +2
Query: 245 MDRQMRAFAESHFRGLQGGL-SSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFS 421
MDR+ R FAE ++R L+ + S P V FI+ P++FSYADF KG+LLPNLPCVFS
Sbjct: 1 MDRETRTFAERYYRDLRDPVPSGGGGPTPSGVTFIQTPNAFSYADFVKGFLLPNLPCVFS 60
Query: 422 SAFTEGWGSRRLWVTPSGKPNFDYLLQNYGDVVVPVANCGVREYNSNPKEHMPLKDYISY 601
SAFTEGWGSRR WVT GKP+F+YL Q YGD VVPVANCGVREYNSNPKEHM +DYISY
Sbjct: 61 SAFTEGWGSRRRWVTSEGKPDFEYLQQKYGDAVVPVANCGVREYNSNPKEHMSFRDYISY 120
Query: 602 WKEYIQGNYSSSRGCLYLKDWHLCR 676
WK+YIQG+YSSSRGCLYLKDWHLCR
Sbjct: 121 WKDYIQGSYSSSRGCLYLKDWHLCR 145
>ref|NP_001191997.1| jmjC domain-containing protein 4 isoform 2 [Mus musculus].
Length = 415
Score = 229 bits (584), Expect = 3e-60
Identities = 105/145 (72%), Positives = 119/145 (82%), Gaps = 1/145 (0%)
Frame = +2
Query: 245 MDRQMRAFAESHFRGLQGGL-SSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFS 421
MDR+ R FAE ++R L+ + S P V FI+ P++FSYADF KG+LLPNLPCVFS
Sbjct: 1 MDRETRTFAERYYRDLRDPVPSGGGGPTPSGVTFIQTPNAFSYADFVKGFLLPNLPCVFS 60
Query: 422 SAFTEGWGSRRLWVTPSGKPNFDYLLQNYGDVVVPVANCGVREYNSNPKEHMPLKDYISY 601
SAFTEGWGSRR WVT GKP+F+YL Q YGD VVPVANCGVREYNSNPKEHM +DYISY
Sbjct: 61 SAFTEGWGSRRRWVTSEGKPDFEYLQQKYGDAVVPVANCGVREYNSNPKEHMSFRDYISY 120
Query: 602 WKEYIQGNYSSSRGCLYLKDWHLCR 676
WK+YIQG+YSSSRGCLYLKDWHLCR
Sbjct: 121 WKDYIQGSYSSSRGCLYLKDWHLCR 145
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,985,363
Number of extensions: 897725
Number of successful extensions: 2880
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2877
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 234
Effective length of database: 12,553,887
Effective search space: 2937609558
Effective search space used: 2937609558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012528
(1010 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001154937.1| jmjC domain-containing protein 4 isoform 2 [... 228 9e-60
Alignment gi|NP_075383.2| jmjC domain-containing protein 4 isoform 1 [Hom... 228 9e-60
>ref|NP_001154937.1| jmjC domain-containing protein 4 isoform 2 [Homo sapiens].
Length = 447
Score = 228 bits (580), Expect = 9e-60
Identities = 104/144 (72%), Positives = 119/144 (82%)
Frame = +2
Query: 245 MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS 424
MDR+ RA A+SHFRGL G V V F+ P +FSYADF +G+LLPNLPCVFSS
Sbjct: 47 MDRETRALADSHFRGL-GVDVPGVGQAPGRVAFVSEPGAFSYADFVRGFLLPNLPCVFSS 105
Query: 425 AFTEGWGSRRLWVTPSGKPNFDYLLQNYGDVVVPVANCGVREYNSNPKEHMPLKDYISYW 604
AFT+GWGSRR WVTP+G+P+FD+LL+ YGDVVVPVANCGV+EYNSNPKEHM L+DYI+YW
Sbjct: 106 AFTQGWGSRRRWVTPAGRPDFDHLLRTYGDVVVPVANCGVQEYNSNPKEHMTLRDYITYW 165
Query: 605 KEYIQGNYSSSRGCLYLKDWHLCR 676
KEYIQ YSS RGCLYLKDWHLCR
Sbjct: 166 KEYIQAGYSSPRGCLYLKDWHLCR 189
>ref|NP_075383.2| jmjC domain-containing protein 4 isoform 1 [Homo sapiens].
Length = 463
Score = 228 bits (580), Expect = 9e-60
Identities = 104/144 (72%), Positives = 119/144 (82%)
Frame = +2
Query: 245 MDRQMRAFAESHFRGLQGGLSSNVSPKLDHVDFIENPDSFSYADFFKGYLLPNLPCVFSS 424
MDR+ RA A+SHFRGL G V V F+ P +FSYADF +G+LLPNLPCVFSS
Sbjct: 47 MDRETRALADSHFRGL-GVDVPGVGQAPGRVAFVSEPGAFSYADFVRGFLLPNLPCVFSS 105
Query: 425 AFTEGWGSRRLWVTPSGKPNFDYLLQNYGDVVVPVANCGVREYNSNPKEHMPLKDYISYW 604
AFT+GWGSRR WVTP+G+P+FD+LL+ YGDVVVPVANCGV+EYNSNPKEHM L+DYI+YW
Sbjct: 106 AFTQGWGSRRRWVTPAGRPDFDHLLRTYGDVVVPVANCGVQEYNSNPKEHMTLRDYITYW 165
Query: 605 KEYIQGNYSSSRGCLYLKDWHLCR 676
KEYIQ YSS RGCLYLKDWHLCR
Sbjct: 166 KEYIQAGYSSPRGCLYLKDWHLCR 189
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,070,286
Number of extensions: 1064160
Number of successful extensions: 3782
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3774
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,901,872
Effective search space: 3472136176
Effective search space used: 3472136176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012528
(1010 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 993 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 993 bits (501), Expect = 0.0
Identities = 501/501 (100%)
Strand = Plus / Plus
Query: 10 atacttcctttttcacttcctagtttaaagaacagataagtgggaatacagaaaccacat 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54412691 atacttcctttttcacttcctagtttaaagaacagataagtgggaatacagaaaccacat 54412750
Query: 70 tctgggttcctgaccttctgccggacggcagccgggagatctggccgctggctccagcat 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54412751 tctgggttcctgaccttctgccggacggcagccgggagatctggccgctggctccagcat 54412810
Query: 130 cgctggcagcccctccgcgtccagcaccccctcctactcccgcagctcttccgacgctcc 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54412811 cgctggcagcccctccgcgtccagcaccccctcctactcccgcagctcttccgacgctcc 54412870
Query: 190 cagcccccctgttcccagcagaccctcacgcaacggactctgagcctagcccagcatgga 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54412871 cagcccccctgttcccagcagaccctcacgcaacggactctgagcctagcccagcatgga 54412930
Query: 250 cagacagatgcgcgcatttgccgagagccacttccgaggcctccagggaggtctctccag 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54412931 cagacagatgcgcgcatttgccgagagccacttccgaggcctccagggaggtctctccag 54412990
Query: 310 caatgtcagcccgaaactggaccacgtggacttcatagagaatccagactccttttccta 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54412991 caatgtcagcccgaaactggaccacgtggacttcatagagaatccagactccttttccta 54413050
Query: 370 cgccgacttcttcaagggctatctgctccccaacttgccctgtgttttctccagcgcttt 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413051 cgccgacttcttcaagggctatctgctccccaacttgccctgtgttttctccagcgcttt 54413110
Query: 430 caccgagggctggggcagcaggaggctctgggtgacgccaagcggaaagcccaattttga 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413111 caccgagggctggggcagcaggaggctctgggtgacgccaagcggaaagcccaattttga 54413170
Query: 490 ttatctgcttcagaactatgg 510
|||||||||||||||||||||
Sbjct: 54413171 ttatctgcttcagaactatgg 54413191
Score = 959 bits (484), Expect = 0.0
Identities = 484/484 (100%)
Strand = Plus / Plus
Query: 509 ggagatgtggttgtacctgttgcaaactgtggggtgagggaatacaactccaaccccaaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413460 ggagatgtggttgtacctgttgcaaactgtggggtgagggaatacaactccaaccccaaa 54413519
Query: 569 gaacacatgcccctcaaagactacatcagctactggaaagagtacattcagggaaactac 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413520 gaacacatgcccctcaaagactacatcagctactggaaagagtacattcagggaaactac 54413579
Query: 629 tcatcttcacggggctgtctctatctcaaagactggcatctgtgcaggtaaaggggccca 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413580 tcatcttcacggggctgtctctatctcaaagactggcatctgtgcaggtaaaggggccca 54413639
Query: 689 gaacactgcttttcctagtcatgagtgaggaacttgtcttttctccagttatgaatttaa 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413640 gaacactgcttttcctagtcatgagtgaggaacttgtcttttctccagttatgaatttaa 54413699
Query: 749 tcagtgtaaaaaacccactctcttcagcctggttggaatgtcattctctccaatcatggc 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413700 tcagtgtaaaaaacccactctcttcagcctggttggaatgtcattctctccaatcatggc 54413759
Query: 809 catctcaccatgcctgcgcggggttggctgcgtgaggaatgtgggcacctctggcagagg 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413760 catctcaccatgcctgcgcggggttggctgcgtgaggaatgtgggcacctctggcagagg 54413819
Query: 869 ctcagatggcctgtgattacctaactcttttttgtcactgtttttcccggagctgccctt 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413820 ctcagatggcctgtgattacctaactcttttttgtcactgtttttcccggagctgccctt 54413879
Query: 929 gtcagtctcacttcgatctaactggcagcacccagccttcaccagtgctcagatgcctct 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54413880 gtcagtctcacttcgatctaactggcagcacccagccttcaccagtgctcagatgcctct 54413939
Query: 989 ggga 992
||||
Sbjct: 54413940 ggga 54413943
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,784,355
Number of extensions: 196
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 2
Length of query: 1010
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 989
Effective length of database: 2,808,413,156
Effective search space: 2777520611284
Effective search space used: 2777520611284
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)