Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012533
(1087 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537959.2| PREDICTED: similar to glycoprotein M6B isoform ... 470 e-133
Alignment gi|XP_858022.1| PREDICTED: similar to glycoprotein M6A isoform ... 283 2e-76
Alignment gi|XP_858064.1| PREDICTED: similar to glycoprotein M6A isoform ... 278 8e-75
Alignment gi|NP_001013856.1| myelin proteolipid protein [Canis lupus fami... 269 4e-72
Alignment gi|XP_858188.1| PREDICTED: similar to glycoprotein M6A isoform ... 265 6e-71
Alignment gi|XP_858107.1| PREDICTED: similar to glycoprotein M6A isoform ... 264 1e-70
Alignment gi|XP_858148.1| PREDICTED: similar to glycoprotein M6A isoform ... 263 3e-70
Alignment gi|XP_532853.2| PREDICTED: similar to glycoprotein M6A isoform ... 261 1e-69
>ref|XP_537959.2| PREDICTED: similar to glycoprotein M6B isoform 2 [Canis
familiaris].
Length = 325
Score = 470 bits (1210), Expect = e-133
Identities = 228/238 (95%), Positives = 232/238 (97%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 81 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 140
Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 141 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 200
Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 201 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 260
Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK S+
Sbjct: 261 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 318
>ref|XP_858022.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 2 [Canis
familiaris].
Length = 277
Score = 283 bits (724), Expect = 2e-76
Identities = 135/266 (50%), Positives = 187/266 (70%), Gaps = 5/266 (1%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGD
Animal-Genome cDNA 20110601C-012533
Animal-Genome cDNA 20110601C-012533
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012533
(1087 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098451.1| neuronal membrane glycoprotein M6-b [Bos tau... 471 e-133
Alignment gi|NP_776574.2| myelin proteolipid protein [Bos taurus]. 271 7e-73
Alignment gi|NP_001068777.1| neuronal membrane glycoprotein M6-a [Bos tau... 261 1e-69
>ref|NP_001098451.1| neuronal membrane glycoprotein M6-b [Bos taurus].
Length = 265
Score = 471 bits (1212), Expect = e-133
Identities = 228/238 (95%), Positives = 233/238 (97%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 80
Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 81 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 140
Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 141 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 200
Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
PG+ICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK S+
Sbjct: 201 PGRICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 258
>ref|NP_776574.2| myelin proteolipid protein [Bos taurus].
Length = 277
Score = 271 bits (693), Expect = 7e-73
Identities = 136/270 (50%), Positives = 172/270 (63%), Gaps = 35/270 (12%)
Frame = +1
Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 537
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
Query: 538 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 624
FV +TY L V WL VF SAVPV++++N
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
Query: 625 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 804
W+TC+ I AP S +A + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAAP-SKTSASIGTLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239
Query: 805 FIVACAGAGATVIALLIYMMATSSN*AYLK 894
FI A GA AT+++LL +M+A + N A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269
>ref|NP_001068777.1| neuronal membrane glycoprotein M6-a [Bos taurus].
Length = 278
Score = 261 bits (666), Expect = 1e-69
Identities = 133/269 (49%), Positives = 185/269 (68%), Gaps = 8/269 (2%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 720
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184
Query: 721 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYL 891
KIC + EN +C + E M++HLFIVA AGAGA VIA++ Y+M S+N AY+
Sbjct: 185 IGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242
Query: 892 KDASKM-RLTRISKQRKNRTCQISSLRQK 975
KDA +M + I + + I S R K
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSK 271
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,365,800
Number of extensions: 1081957
Number of successful extensions: 4344
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4335
Number of HSP's successfully gapped: 3
Length of query: 362
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 259
Effective length of database: 14,273,310
Effective search space: 3696787290
Effective search space used: 3696787290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
TL 72
Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 720
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+G
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGRAD 184
Query: 721 WNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDA 900
WN +PG+ICGS +C + E M++HLFIVA AGAGA VIA++ Y+M S+N AY+KDA
Sbjct: 185 WNGWPGRICGSNFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDA 244
Query: 901 SKM-RLTRISKQRKNRTCQISSLRQK 975
+M + I + + I S R K
Sbjct: 245 CRMQKYEDIKSKEEQELHDIHSTRSK 270
>ref|XP_858064.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 3 [Canis
familiaris].
Length = 279
Score = 278 bits (710), Expect = 8e-75
Identities = 135/268 (50%), Positives = 189/268 (70%), Gaps = 7/268 (2%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGI-- 714
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIQG 184
Query: 715 IPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLK 894
+PW++ P K C S L+ +C + E M++HLFIVA AGAGA VIA++ Y+M S+N AY+K
Sbjct: 185 MPWDSTPAKWCASKLKVMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVK 244
Query: 895 DASKM-RLTRISKQRKNRTCQISSLRQK 975
DA +M + I + + I S R K
Sbjct: 245 DACRMQKYEDIKSKEEQELHDIHSTRSK 272
>ref|NP_001013856.1| myelin proteolipid protein [Canis lupus familiaris].
Length = 277
Score = 269 bits (687), Expect = 4e-72
Identities = 134/270 (49%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
Frame = +1
Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 537
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
Query: 538 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 624
FV +TY L + WL VF SAVPV++++N
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTIVWLLVFACSAVPVYIYFNT 180
Query: 625 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 804
W+TC+ I P S +A + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239
Query: 805 FIVACAGAGATVIALLIYMMATSSN*AYLK 894
FI A GA AT+++LL +M+A + N A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269
>ref|XP_858188.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 6 [Canis
familiaris].
Length = 281
Score = 265 bits (677), Expect = 6e-71
Identities = 136/272 (50%), Positives = 187/272 (68%), Gaps = 11/272 (4%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFST-----NTS 357
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F +T
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 358 DHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM 537
D +L VI + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S
Sbjct: 73 DVSLEKNVIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAW 132
Query: 538 FVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYG 711
F+ LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+G
Sbjct: 133 FIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFG 184
Query: 712 IIPWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN* 882
I+ KIC + EN +C + E M++HLFIVA AGAGA VIA++ Y+M S+N
Sbjct: 185 IVTIGE-EKKIC-TVSENFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANW 242
Query: 883 AYLKDASKM-RLTRISKQRKNRTCQISSLRQK 975
AY+KDA +M + I + + I S R K
Sbjct: 243 AYVKDACRMQKYEDIKSKEEQELHDIHSTRSK 274
>ref|XP_858107.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 4 [Canis
familiaris].
Length = 287
Score = 264 bits (675), Expect = 1e-70
Identities = 131/276 (47%), Positives = 183/276 (66%), Gaps = 15/276 (5%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 720
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+G +
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGKLE 184
Query: 721 WNAFPGKICGSALENICNTN----------EFYMSYHLFIVACAGAGATVIALLIYMMAT 870
W G C L + CN + + M++HLFIVA AGAGA VIA++ Y+M
Sbjct: 185 WRGIQGMPCRPDLSSACNPDTGFDSLLVSLQLNMTFHLFIVALAGAGAAVIAMVHYLMVL 244
Query: 871 SSN*AYLKDASKM-RLTRISKQRKNRTCQISSLRQK 975
S+N AY+KDA +M + I + + I S R K
Sbjct: 245 SANWAYVKDACRMQKYEDIKSKEEQELHDIHSTRSK 280
>ref|XP_858148.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 5 [Canis
familiaris].
Length = 281
Score = 263 bits (671), Expect = 3e-70
Identities = 135/272 (49%), Positives = 186/272 (68%), Gaps = 11/272 (4%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFST-----NTS 357
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F +T
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 358 DHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM 537
D + VI + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S
Sbjct: 73 DVFTIMYVIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAW 132
Query: 538 FVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYG 711
F+ LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+G
Sbjct: 133 FIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFG 184
Query: 712 IIPWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN* 882
I+ KIC + EN +C + E M++HLFIVA AGAGA VIA++ Y+M S+N
Sbjct: 185 IVTIGE-EKKIC-TVSENFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANW 242
Query: 883 AYLKDASKM-RLTRISKQRKNRTCQISSLRQK 975
AY+KDA +M + I + + I S R K
Sbjct: 243 AYVKDACRMQKYEDIKSKEEQELHDIHSTRSK 274
>ref|XP_532853.2| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 1 [Canis
familiaris].
Length = 278
Score = 261 bits (666), Expect = 1e-69
Identities = 133/269 (49%), Positives = 185/269 (68%), Gaps = 8/269 (2%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 720
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184
Query: 721 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYL 891
KIC + EN +C + E M++HLFIVA AGAGA VIA++ Y+M S+N AY+
Sbjct: 185 IGE-EKKIC-TVSENFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242
Query: 892 KDASKM-RLTRISKQRKNRTCQISSLRQK 975
KDA +M + I + + I S R K
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSK 271
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,039,777
Number of extensions: 1116031
Number of successful extensions: 4230
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4207
Number of HSP's successfully gapped: 8
Length of query: 362
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 258
Effective length of database: 15,407,560
Effective search space: 3975150480
Effective search space used: 3975150480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012533
(1087 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927851.3| PREDICTED: neuronal membrane glycoprotein M6... 482 e-136
Alignment gi|XP_003360279.1| PREDICTED: neuronal membrane glycoprotein M6... 474 e-134
Alignment gi|XP_003360278.1| PREDICTED: neuronal membrane glycoprotein M6... 474 e-134
Alignment gi|XP_003360454.1| PREDICTED: myelin proteolipid protein-like i... 287 8e-78
Alignment gi|XP_003360453.1| PREDICTED: myelin proteolipid protein-like i... 269 2e-72
Alignment gi|NP_999139.1| myelin proteolipid protein [Sus scrofa]. 269 2e-72
Alignment gi|XP_003360888.1| PREDICTED: neuronal membrane glycoprotein M6... 261 4e-70
Alignment gi|XP_003133370.2| PREDICTED: neuronal membrane glycoprotein M6... 259 2e-69
>ref|XP_001927851.3| PREDICTED: neuronal membrane glycoprotein M6-b isoform 1 [Sus
scrofa].
Length = 328
Score = 482 bits (1241), Expect = e-136
Identities = 236/261 (90%), Positives = 244/261 (93%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 120
Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 240
Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASKMR 912
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M SSN AYLKDASKM+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 300
Query: 913 LTRISKQRKNRTCQISSLRQK 975
+ K ++ + Q R K
Sbjct: 301 AYQDIKAKEEQELQDIQSRSK 321
Score = 55.1 bits (131), Expect = 7e-08
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +3
Query: 888 LKGCKQNEAYQDIKAKEEQDLPDIQSPSKEQLNSYT 995
LK + +AYQDIKAKEEQ+L DIQS SKEQLNSYT
Sbjct: 293 LKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT 328
>ref|XP_003360279.1| PREDICTED: neuronal membrane glycoprotein M6-b [Sus scrofa].
Length = 305
Score = 474 bits (1221), Expect = e-134
Identities = 231/238 (97%), Positives = 233/238 (97%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 120
Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 240
Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK S+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298
>ref|XP_003360278.1| PREDICTED: neuronal membrane glycoprotein M6-b [Sus scrofa].
Length = 265
Score = 474 bits (1221), Expect = e-134
Identities = 231/238 (97%), Positives = 233/238 (97%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 80
Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 81 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 140
Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 141 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 200
Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK S+
Sbjct: 201 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 258
>ref|XP_003360454.1| PREDICTED: myelin proteolipid protein-like isoform 2 [Sus scrofa].
Length = 242
Score = 287 bits (734), Expect = 8e-78
Identities = 135/235 (57%), Positives = 171/235 (72%)
Frame = +1
Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 549
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S FV +
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATFVGI 120
Query: 550 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 729
TY L V WL VF SAVPV++++N W+TC+ I P S +A + +C D R YG++PWNA
Sbjct: 121 TYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNA 179
Query: 730 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLK 894
FPGK+CGS L +IC T EF M++HLFI A GA AT+++LL +M+A + N A LK
Sbjct: 180 FPGKVCGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLK 234
>ref|XP_003360453.1| PREDICTED: myelin proteolipid protein-like isoform 1 [Sus scrofa].
Length = 277
Score = 269 bits (688), Expect = 2e-72
Identities = 135/270 (50%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
Frame = +1
Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 537
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
Query: 538 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 624
FV +TY L V WL VF SAVPV++++N
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
Query: 625 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 804
W+TC+ I P S +A + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239
Query: 805 FIVACAGAGATVIALLIYMMATSSN*AYLK 894
FI A GA AT+++LL +M+A + N A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269
>ref|NP_999139.1| myelin proteolipid protein [Sus scrofa].
Length = 277
Score = 269 bits (688), Expect = 2e-72
Identities = 135/270 (50%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
Frame = +1
Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 537
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
Query: 538 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 624
FV +TY L V WL VF SAVPV++++N
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
Query: 625 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 804
W+TC+ I P S +A + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239
Query: 805 FIVACAGAGATVIALLIYMMATSSN*AYLK 894
FI A GA AT+++LL +M+A + N A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269
>ref|XP_003360888.1| PREDICTED: neuronal membrane glycoprotein M6-a-like [Sus scrofa].
Length = 278
Score = 261 bits (668), Expect = 4e-70
Identities = 133/269 (49%), Positives = 185/269 (68%), Gaps = 8/269 (2%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 72
Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 720
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184
Query: 721 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYL 891
KIC + EN +C + E M++HLFIVA AGAGA VIA++ Y+M S+N AY+
Sbjct: 185 IGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242
Query: 892 KDASKM-RLTRISKQRKNRTCQISSLRQK 975
KDA +M + I + + I S R K
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSK 271
>ref|XP_003133370.2| PREDICTED: neuronal membrane glycoprotein M6-a-like isoform 1 [Sus
scrofa].
Length = 304
Score = 259 bits (662), Expect = 2e-69
Identities = 132/268 (49%), Positives = 184/268 (68%), Gaps = 8/268 (2%)
Frame = +1
Query: 196 CFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHAL 369
CFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 40 CFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTLD 99
Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 549
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+ L
Sbjct: 100 VFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIML 159
Query: 550 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIPW 723
TY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 160 TYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVTI 211
Query: 724 NAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLK 894
KIC + EN +C + E M++HLFIVA AGAGA VIA++ Y+M S+N AY+K
Sbjct: 212 GE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVK 269
Query: 895 DASKM-RLTRISKQRKNRTCQISSLRQK 975
DA +M + I + + I S R K
Sbjct: 270 DACRMQKYEDIKSKEEQELHDIHSTRSK 297
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,392,485
Number of extensions: 695315
Number of successful extensions: 2743
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2729
Number of HSP's successfully gapped: 9
Length of query: 362
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,854,232
Effective search space: 2319808784
Effective search space used: 2319808784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012533
(1087 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075611.1| neuronal membrane glycoprotein M6-b isoform 4 [... 481 e-136
Alignment gi|NP_001171429.1| neuronal membrane glycoprotein M6-b isoform ... 479 e-135
Alignment gi|NP_001171426.1| neuronal membrane glycoprotein M6-b isoform ... 479 e-135
Alignment gi|NP_001171433.1| neuronal membrane glycoprotein M6-b isoform ... 474 e-134
Alignment gi|NP_001171432.1| neuronal membrane glycoprotein M6-b isoform ... 474 e-134
Alignment gi|NP_001171431.1| neuronal membrane glycoprotein M6-b isoform ... 472 e-133
Alignment gi|NP_001171430.1| neuronal membrane glycoprotein M6-b isoform ... 472 e-133
Alignment gi|NP_001171428.1| neuronal membrane glycoprotein M6-b isoform ... 472 e-133
Alignment gi|NP_001171427.1| neuronal membrane glycoprotein M6-b isoform ... 472 e-133
Alignment gi|NP_035253.1| myelin proteolipid protein [Mus musculus]. 269 2e-72
>ref|NP_075611.1| neuronal membrane glycoprotein M6-b isoform 4 [Mus musculus].
Length = 269
Score = 481 bits (1239), Expect = e-136
Identities = 234/262 (89%), Positives = 245/262 (93%)
Frame = +1
Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL
Sbjct: 1 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 60
Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 549
LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL
Sbjct: 61 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 120
Query: 550 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 729
TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNA
Sbjct: 121 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNA 180
Query: 730 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASKM 909
FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M SSN AYLKDASKM
Sbjct: 181 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKM 240
Query: 910 RLTRISKQRKNRTCQISSLRQK 975
+ + K ++ + Q R K
Sbjct: 241 QAYQDIKAKEEQELQDIQSRSK 262
Score = 55.1 bits (131), Expect = 9e-08
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +3
Query: 888 LKGCKQNEAYQDIKAKEEQDLPDIQSPSKEQLNSYT 995
LK + +AYQDIKAKEEQ+L DIQS SKEQLNSYT
Sbjct: 234 LKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT 269
>ref|NP_001171429.1| neuronal membrane glycoprotein M6-b isoform 3 [Mus musculus].
Length = 288
Score = 479 bits (1234), Expect = e-135
Identities = 233/261 (89%), Positives = 244/261 (93%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 80
Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 81 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 140
Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNAF
Sbjct: 141 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAF 200
Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASKMR 912
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M SSN AYLKDASKM+
Sbjct: 201 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 260
Query: 913 LTRISKQRKNRTCQISSLRQK 975
+ K ++ + Q R K
Sbjct: 261 AYQDIKAKEEQELQDIQSRSK 281
Score = 55.1 bits (131), Expect = 9e-08
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +3
Query: 888 LKGCKQNEAYQDIKAKEEQDLPDIQSPSKEQLNSYT 995
LK + +AYQDIKAKEEQ+L DIQS SKEQLNSYT
Sbjct: 253 LKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT 288
>ref|NP_001171426.1| neuronal membrane glycoprotein M6-b isoform 1 [Mus musculus].
Length = 328
Score = 479 bits (1234), Expect = e-135
Identities = 233/261 (89%), Positives = 244/261 (93%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 120
Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAF 240
Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASKMR 912
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M SSN AYLKDASKM+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 300
Query: 913 LTRISKQRKNRTCQISSLRQK 975
+ K ++ + Q R K
Sbjct: 301 AYQDIKAKEEQELQDIQSRSK 321
Score = 55.1 bits (131), Expect = 9e-08
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +3
Query: 888 LKGCKQNEAYQDIKAKEEQDLPDIQSPSKEQLNSYT 995
LK + +AYQDIKAKEEQ+L DIQS SKEQLNSYT
Sbjct: 293 LKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT 328
>ref|NP_001171433.1| neuronal membrane glycoprotein M6-b isoform 6 [Mus musculus].
Length = 246
Score = 474 bits (1219), Expect = e-134
Identities = 229/239 (95%), Positives = 234/239 (97%)
Frame = +1
Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL
Sbjct: 1 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 60
Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 549
LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL
Sbjct: 61 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 120
Query: 550 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 729
TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNA
Sbjct: 121 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNA 180
Query: 730 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK S+
Sbjct: 181 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 239
>ref|NP_001171432.1| neuronal membrane glycoprotein M6-b isoform 6 [Mus musculus].
Length = 246
Score = 474 bits (1219), Expect = e-134
Identities = 229/239 (95%), Positives = 234/239 (97%)
Frame = +1
Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL
Sbjct: 1 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 60
Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 549
LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL
Sbjct: 61 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 120
Query: 550 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 729
TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNA
Sbjct: 121 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNA 180
Query: 730 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK S+
Sbjct: 181 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 239
>ref|NP_001171431.1| neuronal membrane glycoprotein M6-b isoform 5 [Mus musculus].
Length = 265
Score = 472 bits (1214), Expect = e-133
Identities = 228/238 (95%), Positives = 233/238 (97%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 80
Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 81 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 140
Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNAF
Sbjct: 141 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAF 200
Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK S+
Sbjct: 201 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 258
>ref|NP_001171430.1| neuronal membrane glycoprotein M6-b isoform 5 [Mus musculus].
Length = 265
Score = 472 bits (1214), Expect = e-133
Identities = 228/238 (95%), Positives = 233/238 (97%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 80
Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 81 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 140
Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNAF
Sbjct: 141 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAF 200
Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK S+
Sbjct: 201 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 258
>ref|NP_001171428.1| neuronal membrane glycoprotein M6-b isoform 2 [Mus musculus].
Length = 305
Score = 472 bits (1214), Expect = e-133
Identities = 228/238 (95%), Positives = 233/238 (97%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 120
Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAF 240
Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK S+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298
>ref|NP_001171427.1| neuronal membrane glycoprotein M6-b isoform 2 [Mus musculus].
Length = 305
Score = 472 bits (1214), Expect = e-133
Identities = 228/238 (95%), Positives = 233/238 (97%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 120
Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAF 240
Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK S+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298
>ref|NP_035253.1| myelin proteolipid protein [Mus musculus].
Length = 277
Score = 269 bits (688), Expect = 2e-72
Identities = 135/270 (50%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
Frame = +1
Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 537
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
Query: 538 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 624
FV +TY L V WL VF SAVPV++++N
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
Query: 625 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 804
W+TC+ I P S +A + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239
Query: 805 FIVACAGAGATVIALLIYMMATSSN*AYLK 894
FI A GA AT+++LL +M+A + N A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,937,787
Number of extensions: 911066
Number of successful extensions: 3346
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3338
Number of HSP's successfully gapped: 14
Length of query: 362
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 259
Effective length of database: 12,523,851
Effective search space: 3243677409
Effective search space used: 3243677409
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012533
(1087 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001995.1| neuronal membrane glycoprotein M6-b isoform ... 476 e-134
Alignment gi|NP_001001994.1| neuronal membrane glycoprotein M6-b isoform ... 471 e-133
Alignment gi|NP_001001996.1| neuronal membrane glycoprotein M6-b isoform ... 469 e-132
Alignment gi|NP_005269.1| neuronal membrane glycoprotein M6-b isoform 3 [... 469 e-132
Alignment gi|NP_955772.1| myelin proteolipid protein isoform 2 [Homo sapi... 287 1e-77
Alignment gi|NP_000524.3| myelin proteolipid protein isoform 1 [Homo sapi... 269 3e-72
Alignment gi|NP_001122306.1| myelin proteolipid protein isoform 1 [Homo s... 269 3e-72
Alignment gi|NP_963886.1| neuronal membrane glycoprotein M6-a isoform 3 [... 263 3e-70
Alignment gi|NP_963885.1| neuronal membrane glycoprotein M6-a isoform 2 [... 261 1e-69
Alignment gi|NP_005268.1| neuronal membrane glycoprotein M6-a isoform 1 [... 261 1e-69
>ref|NP_001001995.1| neuronal membrane glycoprotein M6-b isoform 1 [Homo sapiens].
Length = 328
Score = 476 bits (1226), Expect = e-134
Identities = 232/261 (88%), Positives = 242/261 (92%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120
Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 240
Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASKMR 912
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M SSN AYLKDASKM+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 300
Query: 913 LTRISKQRKNRTCQISSLRQK 975
+ K ++ + Q R K
Sbjct: 301 AYQDIKAKEEQELQDIQSRSK 321
Score = 55.1 bits (131), Expect = 1e-07
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +3
Query: 888 LKGCKQNEAYQDIKAKEEQDLPDIQSPSKEQLNSYT 995
LK + +AYQDIKAKEEQ+L DIQS SKEQLNSYT
Sbjct: 293 LKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT 328
>ref|NP_001001994.1| neuronal membrane glycoprotein M6-b isoform 4 [Homo sapiens].
Length = 246
Score = 471 bits (1211), Expect = e-133
Identities = 228/239 (95%), Positives = 232/239 (97%)
Frame = +1
Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHAL
Sbjct: 1 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHAL 60
Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 549
LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL
Sbjct: 61 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 120
Query: 550 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 729
TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNA
Sbjct: 121 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNA 180
Query: 730 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK S+
Sbjct: 181 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 239
>ref|NP_001001996.1| neuronal membrane glycoprotein M6-b isoform 2 [Homo sapiens].
Length = 305
Score = 469 bits (1206), Expect = e-132
Identities = 227/238 (95%), Positives = 231/238 (97%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120
Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 240
Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK S+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298
>ref|NP_005269.1| neuronal membrane glycoprotein M6-b isoform 3 [Homo sapiens].
Length = 265
Score = 469 bits (1206), Expect = e-132
Identities = 227/238 (95%), Positives = 231/238 (97%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 80
Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 81 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 140
Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNAF
Sbjct: 141 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 200
Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK S+
Sbjct: 201 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 258
>ref|NP_955772.1| myelin proteolipid protein isoform 2 [Homo sapiens].
Length = 242
Score = 287 bits (734), Expect = 1e-77
Identities = 135/235 (57%), Positives = 171/235 (72%)
Frame = +1
Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 549
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S FV +
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATFVGI 120
Query: 550 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 729
TY L V WL VF SAVPV++++N W+TC+ I P S +A + +C D R YG++PWNA
Sbjct: 121 TYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNA 179
Query: 730 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLK 894
FPGK+CGS L +IC T EF M++HLFI A GA AT+++LL +M+A + N A LK
Sbjct: 180 FPGKVCGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLK 234
>ref|NP_000524.3| myelin proteolipid protein isoform 1 [Homo sapiens].
Length = 277
Score = 269 bits (688), Expect = 3e-72
Identities = 135/270 (50%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
Frame = +1
Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 537
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
Query: 538 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 624
FV +TY L V WL VF SAVPV++++N
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
Query: 625 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 804
W+TC+ I P S +A + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239
Query: 805 FIVACAGAGATVIALLIYMMATSSN*AYLK 894
FI A GA AT+++LL +M+A + N A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269
>ref|NP_001122306.1| myelin proteolipid protein isoform 1 [Homo sapiens].
Length = 277
Score = 269 bits (688), Expect = 3e-72
Identities = 135/270 (50%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
Frame = +1
Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 537
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
Query: 538 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 624
FV +TY L V WL VF SAVPV++++N
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
Query: 625 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 804
W+TC+ I P S +A + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239
Query: 805 FIVACAGAGATVIALLIYMMATSSN*AYLK 894
FI A GA AT+++LL +M+A + N A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269
>ref|NP_963886.1| neuronal membrane glycoprotein M6-a isoform 3 [Homo sapiens].
Length = 267
Score = 263 bits (671), Expect = 3e-70
Identities = 134/270 (49%), Positives = 186/270 (68%), Gaps = 8/270 (2%)
Frame = +1
Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDH 363
MGCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 1 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDT 60
Query: 364 ALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFV 543
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 61 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFI 120
Query: 544 FLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGII 717
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 121 MLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIV 172
Query: 718 PWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AY 888
KIC + EN +C + E M++HLFIVA AGAGA VIA++ Y+M S+N AY
Sbjct: 173 TIGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAY 230
Query: 889 LKDASKM-RLTRISKQRKNRTCQISSLRQK 975
+KDA +M + I + + I S R K
Sbjct: 231 VKDACRMQKYEDIKSKEEQELHDIHSTRSK 260
>ref|NP_963885.1| neuronal membrane glycoprotein M6-a isoform 2 [Homo sapiens].
Length = 278
Score = 261 bits (666), Expect = 1e-69
Identities = 133/269 (49%), Positives = 185/269 (68%), Gaps = 8/269 (2%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 720
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184
Query: 721 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYL 891
KIC + EN +C + E M++HLFIVA AGAGA VIA++ Y+M S+N AY+
Sbjct: 185 IGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242
Query: 892 KDASKM-RLTRISKQRKNRTCQISSLRQK 975
KDA +M + I + + I S R K
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSK 271
>ref|NP_005268.1| neuronal membrane glycoprotein M6-a isoform 1 [Homo sapiens].
Length = 278
Score = 261 bits (666), Expect = 1e-69
Identities = 133/269 (49%), Positives = 185/269 (68%), Gaps = 8/269 (2%)
Frame = +1
Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 720
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184
Query: 721 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYL 891
KIC + EN +C + E M++HLFIVA AGAGA VIA++ Y+M S+N AY+
Sbjct: 185 IGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242
Query: 892 KDASKM-RLTRISKQRKNRTCQISSLRQK 975
KDA +M + I + + I S R K
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSK 271
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,172,747
Number of extensions: 1091659
Number of successful extensions: 4164
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4145
Number of HSP's successfully gapped: 11
Length of query: 362
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 258
Effective length of database: 14,868,908
Effective search space: 3836178264
Effective search space used: 3836178264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012533
(1087 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 373 e-100
>Sscrofa_ChrX
|| Length = 144288218
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Minus
Query: 193 ggctgcttcgagtgctgcatcaagtgtctgggaggagtcccctacgcctccctggtggcc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11395909 ggctgcttcgagtgctgcatcaagtgtctgggaggagtcccctacgcctccctggtggcc 11395850
Query: 253 accatcctctgcttctcgggggtggccttgttctgcggctgtgggcatgtggccctggcg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11395849 accatcctctgcttctcgggggtggccttgttctgcggctgtgggcatgtggccctggcg 11395790
Query: 313 ggcaccgtggccatcctggagcagcacttctccaccaacaccagtgaccatgccctgctg 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11395789 ggcaccgtggccatcctggagcagcacttctccaccaacaccagtgaccatgccctgctg 11395730
Query: 373 agcgaggt 380
||||||||
Sbjct: 11395729 agcgaggt 11395722
Score = 345 bits (174), Expect = 3e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 537 gtttgtcttcctcacctacgtgctgggagtggcctggctgggcgtgttcggtttctccgc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11391202 gtttgtcttcctcacctacgtgctgggagtggcctggctgggcgtgttcggtttctccgc 11391143
Query: 597 ggtgccggtgttcatgttctacaacatatggtccacctgtgaagtcatcaaggcccccca 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11391142 ggtgccggtgttcatgttctacaacatatggtccacctgtgaagtcatcaaggcccccca 11391083
Query: 657 gagcaacgggacagccggggtggagcagatctgtgtggacatccggcaatacgg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11391082 gagcaacgggacagccggggtggagcagatctgtgtggacatccggcaatacgg 11391029
Score = 311 bits (157), Expect = 4e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 381 aatccaactgatgcagtacgtcatctacggcatcgcgtccttcttcttcttgtacgggat 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11394107 aatccaactgatgcagtacgtcatctacggcatcgcgtccttcttcttcttgtacgggat 11394048
Query: 441 catcctgttggcagagggcttctacaccaccagcgcagtcaaggagctgcatggcgagtt 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11394047 catcctgttggcagagggcttctacaccaccagcgcagtcaaggagctgcatggcgagtt 11393988
Query: 501 taagacaaccgcctgtggccgctgcatcagcgggatg 537
|||||||||||||||||||||||||||||||||||||
Sbjct: 11393987 taagacaaccgcctgtggccgctgcatcagcgggatg 11393951
Score = 297 bits (150), Expect = 7e-78
Identities = 202/218 (92%), Gaps = 1/218 (0%)
Strand = Plus / Minus
Query: 871 tcttctaactaggcttacttaaaggatgcaagcaaaatg-aggcttaccaggatatcaaa 929
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 11385257 tcttctaactgggcttacttaaaggatgcaagcaaaatgcaggcttaccaggatatcaaa 11385198
Query: 930 gcaaaggaagaacaggacctgccagatatccagtctccgtcaaaagaacaactcaattct 989
||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 11385197 gcaaaggaagaacaggaactgcaagatatccagtctcggtcaaaagaacaactcaattct 11385138
Query: 990 tacacataaaagtctggcaaagggtctcagcccacaatttgaaagctctgaaaaatcacc 1049
|||||||||| ||||| || |||||||||||| || | |||| |||||||| ||||||||
Sbjct: 11385137 tacacataaaggtctgccagagggtctcagccgacgagttgacagctctgacaaatcacc 11385078
Query: 1050 aaacagctgctctgcagtccagattggttccccaccca 1087
| |||||||||||||||||||||| ||||||||||||
Sbjct: 11385077 agacagctgctctgcagtccagatgtgttccccaccca 11385040
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 104 gacctgcaaacttgtgccaccggctctgcccgtccccagggagcccgagcgtccgcggcc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11536048 gacctgcaaacttgtgccaccggctctgcccgtccccagggagcccgagcgtccgcggcc 11535989
Query: 164 ctcgcccctcccgcccgtctccagccatggg 194
|||||||||||||||||||||||||||||||
Sbjct: 11535988 ctcgcccctcccgcccgtctccagccatggg 11535958
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 709 ggcatcatcccttggaacgccttccccggaaaaatatgtggctctgccctggagaacatc 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11389225 ggcatcatcccttggaacgccttccccggaaaaatatgtggctctgccctggagaacatc 11389166
Query: 769 tgcaacaccaacgag 783
|||||||||||||||
Sbjct: 11389165 tgcaacaccaacgag 11389151
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 782 agttctacatgtcctaccacctgttcatcgtggcctgcgcgggagctggcgctaccgtca 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11388356 agttctacatgtcctaccacctgttcatcgtggcctgcgcgggagctggcgctaccgtca 11388297
Query: 842 tcgccctg 849
||||||||
Sbjct: 11388296 tcgccctg 11388289
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,392,592
Number of extensions: 108
Number of successful extensions: 108
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 7
Length of query: 1087
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1066
Effective length of database: 2,808,413,156
Effective search space: 2993768424296
Effective search space used: 2993768424296
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)