Animal-Genome cDNA 20110601C-012533


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012533
         (1087 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_537959.2| PREDICTED: similar to glycoprotein M6B isoform ...   470   e-133
Alignment   gi|XP_858022.1| PREDICTED: similar to glycoprotein M6A isoform ...   283   2e-76
Alignment   gi|XP_858064.1| PREDICTED: similar to glycoprotein M6A isoform ...   278   8e-75
Alignment   gi|NP_001013856.1| myelin proteolipid protein [Canis lupus fami...   269   4e-72
Alignment   gi|XP_858188.1| PREDICTED: similar to glycoprotein M6A isoform ...   265   6e-71
Alignment   gi|XP_858107.1| PREDICTED: similar to glycoprotein M6A isoform ...   264   1e-70
Alignment   gi|XP_858148.1| PREDICTED: similar to glycoprotein M6A isoform ...   263   3e-70
Alignment   gi|XP_532853.2| PREDICTED: similar to glycoprotein M6A isoform ...   261   1e-69

>ref|XP_537959.2| PREDICTED: similar to glycoprotein M6B isoform 2 [Canis
           familiaris].
          Length = 325

 Score =  470 bits (1210), Expect = e-133
 Identities = 228/238 (95%), Positives = 232/238 (97%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 81  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 140

Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 141 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 200

Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 201 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 260

Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK  S+
Sbjct: 261 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 318


>ref|XP_858022.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 2 [Canis
           familiaris].
          Length = 277

 Score =  283 bits (724), Expect = 2e-76
 Identities = 135/266 (50%), Positives = 187/266 (70%), Gaps = 5/266 (1%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F  +    D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGD

Animal-Genome cDNA 20110601C-012533


Animal-Genome cDNA 20110601C-012533


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012533
         (1087 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001098451.1| neuronal membrane glycoprotein M6-b [Bos tau...   471   e-133
Alignment   gi|NP_776574.2| myelin proteolipid protein [Bos taurus].             271   7e-73
Alignment   gi|NP_001068777.1| neuronal membrane glycoprotein M6-a [Bos tau...   261   1e-69

>ref|NP_001098451.1| neuronal membrane glycoprotein M6-b [Bos taurus].
          Length = 265

 Score =  471 bits (1212), Expect = e-133
 Identities = 228/238 (95%), Positives = 233/238 (97%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 21  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 80

Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 81  SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 140

Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 141 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVEQICVDIRQYGIIPWNAF 200

Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
           PG+ICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK  S+
Sbjct: 201 PGRICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 258


>ref|NP_776574.2| myelin proteolipid protein [Bos taurus].
          Length = 277

 Score =  271 bits (693), Expect = 7e-73
 Identities = 136/270 (50%), Positives = 172/270 (63%), Gaps = 35/270 (12%)
 Frame = +1

Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 537
           L  VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S      
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120

Query: 538 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 624
                                          FV +TY L V WL VF  SAVPV++++N 
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180

Query: 625 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 804
           W+TC+ I AP S  +A +  +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAAP-SKTSASIGTLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239

Query: 805 FIVACAGAGATVIALLIYMMATSSN*AYLK 894
           FI A  GA AT+++LL +M+A + N A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269


>ref|NP_001068777.1| neuronal membrane glycoprotein M6-a [Bos taurus].
          Length = 278

 Score =  261 bits (666), Expect = 1e-69
 Identities = 133/269 (49%), Positives = 185/269 (68%), Gaps = 8/269 (2%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F  +    D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546
            +  +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  F+ 
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132

Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 720
           LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+GI+ 
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184

Query: 721 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYL 891
                 KIC +  EN   +C + E  M++HLFIVA AGAGA VIA++ Y+M  S+N AY+
Sbjct: 185 IGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242

Query: 892 KDASKM-RLTRISKQRKNRTCQISSLRQK 975
           KDA +M +   I  + +     I S R K
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSK 271


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,365,800
Number of extensions: 1081957
Number of successful extensions: 4344
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4335
Number of HSP's successfully gapped: 3
Length of query: 362
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 259
Effective length of database: 14,273,310
Effective search space: 3696787290
Effective search space used: 3696787290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
TL 72 Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546 + +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+ Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132 Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 720 LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+G Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGRAD 184 Query: 721 WNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDA 900 WN +PG+ICGS +C + E M++HLFIVA AGAGA VIA++ Y+M S+N AY+KDA Sbjct: 185 WNGWPGRICGSNFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDA 244 Query: 901 SKM-RLTRISKQRKNRTCQISSLRQK 975 +M + I + + I S R K Sbjct: 245 CRMQKYEDIKSKEEQELHDIHSTRSK 270 >ref|XP_858064.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 3 [Canis familiaris]. Length = 279 Score = 278 bits (710), Expect = 8e-75 Identities = 135/268 (50%), Positives = 189/268 (70%), Gaps = 7/268 (2%) Frame = +1 Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366 GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72 Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546 + +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+ Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132 Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGI-- 714 LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIQG 184 Query: 715 IPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLK 894 +PW++ P K C S L+ +C + E M++HLFIVA AGAGA VIA++ Y+M S+N AY+K Sbjct: 185 MPWDSTPAKWCASKLKVMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVK 244 Query: 895 DASKM-RLTRISKQRKNRTCQISSLRQK 975 DA +M + I + + I S R K Sbjct: 245 DACRMQKYEDIKSKEEQELHDIHSTRSK 272 >ref|NP_001013856.1| myelin proteolipid protein [Canis lupus familiaris]. Length = 277 Score = 269 bits (687), Expect = 4e-72 Identities = 134/270 (49%), Positives = 171/270 (63%), Gaps = 35/270 (12%) Frame = +1 Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369 MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+ Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60 Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 537 L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120 Query: 538 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 624 FV +TY L + WL VF SAVPV++++N Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTIVWLLVFACSAVPVYIYFNT 180 Query: 625 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 804 W+TC+ I P S +A + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239 Query: 805 FIVACAGAGATVIALLIYMMATSSN*AYLK 894 FI A GA AT+++LL +M+A + N A LK Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269 >ref|XP_858188.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 6 [Canis familiaris]. Length = 281 Score = 265 bits (677), Expect = 6e-71 Identities = 136/272 (50%), Positives = 187/272 (68%), Gaps = 11/272 (4%) Frame = +1 Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFST-----NTS 357 GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F +T Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72 Query: 358 DHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM 537 D +L VI + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S Sbjct: 73 DVSLEKNVIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAW 132 Query: 538 FVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYG 711 F+ LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+G Sbjct: 133 FIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFG 184 Query: 712 IIPWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN* 882 I+ KIC + EN +C + E M++HLFIVA AGAGA VIA++ Y+M S+N Sbjct: 185 IVTIGE-EKKIC-TVSENFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANW 242 Query: 883 AYLKDASKM-RLTRISKQRKNRTCQISSLRQK 975 AY+KDA +M + I + + I S R K Sbjct: 243 AYVKDACRMQKYEDIKSKEEQELHDIHSTRSK 274 >ref|XP_858107.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 4 [Canis familiaris]. Length = 287 Score = 264 bits (675), Expect = 1e-70 Identities = 131/276 (47%), Positives = 183/276 (66%), Gaps = 15/276 (5%) Frame = +1 Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366 GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72 Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546 + +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+ Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132 Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 720 LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+G + Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGKLE 184 Query: 721 WNAFPGKICGSALENICNTN----------EFYMSYHLFIVACAGAGATVIALLIYMMAT 870 W G C L + CN + + M++HLFIVA AGAGA VIA++ Y+M Sbjct: 185 WRGIQGMPCRPDLSSACNPDTGFDSLLVSLQLNMTFHLFIVALAGAGAAVIAMVHYLMVL 244 Query: 871 SSN*AYLKDASKM-RLTRISKQRKNRTCQISSLRQK 975 S+N AY+KDA +M + I + + I S R K Sbjct: 245 SANWAYVKDACRMQKYEDIKSKEEQELHDIHSTRSK 280 >ref|XP_858148.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 5 [Canis familiaris]. Length = 281 Score = 263 bits (671), Expect = 3e-70 Identities = 135/272 (49%), Positives = 186/272 (68%), Gaps = 11/272 (4%) Frame = +1 Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFST-----NTS 357 GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F +T Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72 Query: 358 DHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM 537 D + VI + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S Sbjct: 73 DVFTIMYVIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAW 132 Query: 538 FVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYG 711 F+ LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+G Sbjct: 133 FIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFG 184 Query: 712 IIPWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN* 882 I+ KIC + EN +C + E M++HLFIVA AGAGA VIA++ Y+M S+N Sbjct: 185 IVTIGE-EKKIC-TVSENFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANW 242 Query: 883 AYLKDASKM-RLTRISKQRKNRTCQISSLRQK 975 AY+KDA +M + I + + I S R K Sbjct: 243 AYVKDACRMQKYEDIKSKEEQELHDIHSTRSK 274 >ref|XP_532853.2| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 1 [Canis familiaris]. Length = 278 Score = 261 bits (666), Expect = 1e-69 Identities = 133/269 (49%), Positives = 185/269 (68%), Gaps = 8/269 (2%) Frame = +1 Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366 GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72 Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546 + +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+ Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132 Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 720 LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+ Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184 Query: 721 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYL 891 KIC + EN +C + E M++HLFIVA AGAGA VIA++ Y+M S+N AY+ Sbjct: 185 IGE-EKKIC-TVSENFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242 Query: 892 KDASKM-RLTRISKQRKNRTCQISSLRQK 975 KDA +M + I + + I S R K Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSK 271 Database: RefSeq49_CP.fasta Posted date: Oct 17, 2011 1:42 PM Number of letters in database: 18,874,504 Number of sequences in database: 33,336 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33336 Number of Hits to DB: 41,039,777 Number of extensions: 1116031 Number of successful extensions: 4230 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 4207 Number of HSP's successfully gapped: 8 Length of query: 362 Length of database: 18,874,504 Length adjustment: 104 Effective length of query: 258 Effective length of database: 15,407,560 Effective search space: 3975150480 Effective search space used: 3975150480 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012533
         (1087 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001927851.3| PREDICTED: neuronal membrane glycoprotein M6...   482   e-136
Alignment   gi|XP_003360279.1| PREDICTED: neuronal membrane glycoprotein M6...   474   e-134
Alignment   gi|XP_003360278.1| PREDICTED: neuronal membrane glycoprotein M6...   474   e-134
Alignment   gi|XP_003360454.1| PREDICTED: myelin proteolipid protein-like i...   287   8e-78
Alignment   gi|XP_003360453.1| PREDICTED: myelin proteolipid protein-like i...   269   2e-72
Alignment   gi|NP_999139.1| myelin proteolipid protein [Sus scrofa].             269   2e-72
Alignment   gi|XP_003360888.1| PREDICTED: neuronal membrane glycoprotein M6...   261   4e-70
Alignment   gi|XP_003133370.2| PREDICTED: neuronal membrane glycoprotein M6...   259   2e-69

>ref|XP_001927851.3| PREDICTED: neuronal membrane glycoprotein M6-b isoform 1 [Sus
           scrofa].
          Length = 328

 Score =  482 bits (1241), Expect = e-136
 Identities = 236/261 (90%), Positives = 244/261 (93%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 61  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 120

Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180

Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 240

Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASKMR 912
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M  SSN AYLKDASKM+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 300

Query: 913 LTRISKQRKNRTCQISSLRQK 975
             +  K ++ +  Q    R K
Sbjct: 301 AYQDIKAKEEQELQDIQSRSK 321



 Score = 55.1 bits (131), Expect = 7e-08
 Identities = 27/36 (75%), Positives = 30/36 (83%)
 Frame = +3

Query: 888 LKGCKQNEAYQDIKAKEEQDLPDIQSPSKEQLNSYT 995
           LK   + +AYQDIKAKEEQ+L DIQS SKEQLNSYT
Sbjct: 293 LKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT 328


>ref|XP_003360279.1| PREDICTED: neuronal membrane glycoprotein M6-b [Sus scrofa].
          Length = 305

 Score =  474 bits (1221), Expect = e-134
 Identities = 231/238 (97%), Positives = 233/238 (97%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 61  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 120

Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180

Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 240

Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK  S+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298


>ref|XP_003360278.1| PREDICTED: neuronal membrane glycoprotein M6-b [Sus scrofa].
          Length = 265

 Score =  474 bits (1221), Expect = e-134
 Identities = 231/238 (97%), Positives = 233/238 (97%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 21  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 80

Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 81  SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 140

Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF
Sbjct: 141 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 200

Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK  S+
Sbjct: 201 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 258


>ref|XP_003360454.1| PREDICTED: myelin proteolipid protein-like isoform 2 [Sus scrofa].
          Length = 242

 Score =  287 bits (734), Expect = 8e-78
 Identities = 135/235 (57%), Positives = 171/235 (72%)
 Frame = +1

Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 549
           L  VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S  FV +
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATFVGI 120

Query: 550 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 729
           TY L V WL VF  SAVPV++++N W+TC+ I  P S  +A +  +C D R YG++PWNA
Sbjct: 121 TYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNA 179

Query: 730 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLK 894
           FPGK+CGS L +IC T EF M++HLFI A  GA AT+++LL +M+A + N A LK
Sbjct: 180 FPGKVCGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLK 234


>ref|XP_003360453.1| PREDICTED: myelin proteolipid protein-like isoform 1 [Sus scrofa].
          Length = 277

 Score =  269 bits (688), Expect = 2e-72
 Identities = 135/270 (50%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
 Frame = +1

Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 537
           L  VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S      
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120

Query: 538 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 624
                                          FV +TY L V WL VF  SAVPV++++N 
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180

Query: 625 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 804
           W+TC+ I  P S  +A +  +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239

Query: 805 FIVACAGAGATVIALLIYMMATSSN*AYLK 894
           FI A  GA AT+++LL +M+A + N A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269


>ref|NP_999139.1| myelin proteolipid protein [Sus scrofa].
          Length = 277

 Score =  269 bits (688), Expect = 2e-72
 Identities = 135/270 (50%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
 Frame = +1

Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 537
           L  VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S      
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120

Query: 538 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 624
                                          FV +TY L V WL VF  SAVPV++++N 
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180

Query: 625 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 804
           W+TC+ I  P S  +A +  +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239

Query: 805 FIVACAGAGATVIALLIYMMATSSN*AYLK 894
           FI A  GA AT+++LL +M+A + N A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269


>ref|XP_003360888.1| PREDICTED: neuronal membrane glycoprotein M6-a-like [Sus scrofa].
          Length = 278

 Score =  261 bits (668), Expect = 4e-70
 Identities = 133/269 (49%), Positives = 185/269 (68%), Gaps = 8/269 (2%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F  +    D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 72

Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546
            +  +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  F+ 
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132

Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 720
           LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+GI+ 
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184

Query: 721 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYL 891
                 KIC +  EN   +C + E  M++HLFIVA AGAGA VIA++ Y+M  S+N AY+
Sbjct: 185 IGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242

Query: 892 KDASKM-RLTRISKQRKNRTCQISSLRQK 975
           KDA +M +   I  + +     I S R K
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSK 271


>ref|XP_003133370.2| PREDICTED: neuronal membrane glycoprotein M6-a-like isoform 1 [Sus
           scrofa].
          Length = 304

 Score =  259 bits (662), Expect = 2e-69
 Identities = 132/268 (49%), Positives = 184/268 (68%), Gaps = 8/268 (2%)
 Frame = +1

Query: 196 CFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHAL 369
           CFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F  +    D   
Sbjct: 40  CFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTLD 99

Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 549
           +  +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  F+ L
Sbjct: 100 VFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIML 159

Query: 550 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIPW 723
           TY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+GI+  
Sbjct: 160 TYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVTI 211

Query: 724 NAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLK 894
                KIC +  EN   +C + E  M++HLFIVA AGAGA VIA++ Y+M  S+N AY+K
Sbjct: 212 GE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVK 269

Query: 895 DASKM-RLTRISKQRKNRTCQISSLRQK 975
           DA +M +   I  + +     I S R K
Sbjct: 270 DACRMQKYEDIKSKEEQELHDIHSTRSK 297


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,392,485
Number of extensions: 695315
Number of successful extensions: 2743
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2729
Number of HSP's successfully gapped: 9
Length of query: 362
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,854,232
Effective search space: 2319808784
Effective search space used: 2319808784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012533
         (1087 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_075611.1| neuronal membrane glycoprotein M6-b isoform 4 [...   481   e-136
Alignment   gi|NP_001171429.1| neuronal membrane glycoprotein M6-b isoform ...   479   e-135
Alignment   gi|NP_001171426.1| neuronal membrane glycoprotein M6-b isoform ...   479   e-135
Alignment   gi|NP_001171433.1| neuronal membrane glycoprotein M6-b isoform ...   474   e-134
Alignment   gi|NP_001171432.1| neuronal membrane glycoprotein M6-b isoform ...   474   e-134
Alignment   gi|NP_001171431.1| neuronal membrane glycoprotein M6-b isoform ...   472   e-133
Alignment   gi|NP_001171430.1| neuronal membrane glycoprotein M6-b isoform ...   472   e-133
Alignment   gi|NP_001171428.1| neuronal membrane glycoprotein M6-b isoform ...   472   e-133
Alignment   gi|NP_001171427.1| neuronal membrane glycoprotein M6-b isoform ...   472   e-133
Alignment   gi|NP_035253.1| myelin proteolipid protein [Mus musculus].           269   2e-72

>ref|NP_075611.1| neuronal membrane glycoprotein M6-b isoform 4 [Mus musculus].
          Length = 269

 Score =  481 bits (1239), Expect = e-136
 Identities = 234/262 (89%), Positives = 245/262 (93%)
 Frame = +1

Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
           MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL
Sbjct: 1   MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 60

Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 549
           LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL
Sbjct: 61  LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 120

Query: 550 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 729
           TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNA
Sbjct: 121 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNA 180

Query: 730 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASKM 909
           FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M  SSN AYLKDASKM
Sbjct: 181 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKM 240

Query: 910 RLTRISKQRKNRTCQISSLRQK 975
           +  +  K ++ +  Q    R K
Sbjct: 241 QAYQDIKAKEEQELQDIQSRSK 262



 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 27/36 (75%), Positives = 30/36 (83%)
 Frame = +3

Query: 888 LKGCKQNEAYQDIKAKEEQDLPDIQSPSKEQLNSYT 995
           LK   + +AYQDIKAKEEQ+L DIQS SKEQLNSYT
Sbjct: 234 LKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT 269


>ref|NP_001171429.1| neuronal membrane glycoprotein M6-b isoform 3 [Mus musculus].
          Length = 288

 Score =  479 bits (1234), Expect = e-135
 Identities = 233/261 (89%), Positives = 244/261 (93%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 21  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 80

Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 81  SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 140

Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNAF
Sbjct: 141 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAF 200

Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASKMR 912
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M  SSN AYLKDASKM+
Sbjct: 201 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 260

Query: 913 LTRISKQRKNRTCQISSLRQK 975
             +  K ++ +  Q    R K
Sbjct: 261 AYQDIKAKEEQELQDIQSRSK 281



 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 27/36 (75%), Positives = 30/36 (83%)
 Frame = +3

Query: 888 LKGCKQNEAYQDIKAKEEQDLPDIQSPSKEQLNSYT 995
           LK   + +AYQDIKAKEEQ+L DIQS SKEQLNSYT
Sbjct: 253 LKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT 288


>ref|NP_001171426.1| neuronal membrane glycoprotein M6-b isoform 1 [Mus musculus].
          Length = 328

 Score =  479 bits (1234), Expect = e-135
 Identities = 233/261 (89%), Positives = 244/261 (93%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 61  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 120

Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180

Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAF 240

Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASKMR 912
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M  SSN AYLKDASKM+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 300

Query: 913 LTRISKQRKNRTCQISSLRQK 975
             +  K ++ +  Q    R K
Sbjct: 301 AYQDIKAKEEQELQDIQSRSK 321



 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 27/36 (75%), Positives = 30/36 (83%)
 Frame = +3

Query: 888 LKGCKQNEAYQDIKAKEEQDLPDIQSPSKEQLNSYT 995
           LK   + +AYQDIKAKEEQ+L DIQS SKEQLNSYT
Sbjct: 293 LKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT 328


>ref|NP_001171433.1| neuronal membrane glycoprotein M6-b isoform 6 [Mus musculus].
          Length = 246

 Score =  474 bits (1219), Expect = e-134
 Identities = 229/239 (95%), Positives = 234/239 (97%)
 Frame = +1

Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
           MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL
Sbjct: 1   MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 60

Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 549
           LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL
Sbjct: 61  LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 120

Query: 550 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 729
           TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNA
Sbjct: 121 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNA 180

Query: 730 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
           FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK  S+
Sbjct: 181 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 239


>ref|NP_001171432.1| neuronal membrane glycoprotein M6-b isoform 6 [Mus musculus].
          Length = 246

 Score =  474 bits (1219), Expect = e-134
 Identities = 229/239 (95%), Positives = 234/239 (97%)
 Frame = +1

Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
           MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL
Sbjct: 1   MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 60

Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 549
           LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL
Sbjct: 61  LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 120

Query: 550 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 729
           TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNA
Sbjct: 121 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNA 180

Query: 730 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
           FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK  S+
Sbjct: 181 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 239


>ref|NP_001171431.1| neuronal membrane glycoprotein M6-b isoform 5 [Mus musculus].
          Length = 265

 Score =  472 bits (1214), Expect = e-133
 Identities = 228/238 (95%), Positives = 233/238 (97%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 21  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 80

Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 81  SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 140

Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNAF
Sbjct: 141 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAF 200

Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK  S+
Sbjct: 201 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 258


>ref|NP_001171430.1| neuronal membrane glycoprotein M6-b isoform 5 [Mus musculus].
          Length = 265

 Score =  472 bits (1214), Expect = e-133
 Identities = 228/238 (95%), Positives = 233/238 (97%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 21  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 80

Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 81  SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 140

Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNAF
Sbjct: 141 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAF 200

Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK  S+
Sbjct: 201 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 258


>ref|NP_001171428.1| neuronal membrane glycoprotein M6-b isoform 2 [Mus musculus].
          Length = 305

 Score =  472 bits (1214), Expect = e-133
 Identities = 228/238 (95%), Positives = 233/238 (97%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 61  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 120

Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180

Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAF 240

Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK  S+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298


>ref|NP_001171427.1| neuronal membrane glycoprotein M6-b isoform 2 [Mus musculus].
          Length = 305

 Score =  472 bits (1214), Expect = e-133
 Identities = 228/238 (95%), Positives = 233/238 (97%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL
Sbjct: 61  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 120

Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180

Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQSNGT+GVEQICVD+RQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAF 240

Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK  S+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298


>ref|NP_035253.1| myelin proteolipid protein [Mus musculus].
          Length = 277

 Score =  269 bits (688), Expect = 2e-72
 Identities = 135/270 (50%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
 Frame = +1

Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 537
           L  VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S      
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120

Query: 538 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 624
                                          FV +TY L V WL VF  SAVPV++++N 
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180

Query: 625 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 804
           W+TC+ I  P S  +A +  +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239

Query: 805 FIVACAGAGATVIALLIYMMATSSN*AYLK 894
           FI A  GA AT+++LL +M+A + N A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,937,787
Number of extensions: 911066
Number of successful extensions: 3346
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3338
Number of HSP's successfully gapped: 14
Length of query: 362
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 259
Effective length of database: 12,523,851
Effective search space: 3243677409
Effective search space used: 3243677409
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012533
         (1087 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001001995.1| neuronal membrane glycoprotein M6-b isoform ...   476   e-134
Alignment   gi|NP_001001994.1| neuronal membrane glycoprotein M6-b isoform ...   471   e-133
Alignment   gi|NP_001001996.1| neuronal membrane glycoprotein M6-b isoform ...   469   e-132
Alignment   gi|NP_005269.1| neuronal membrane glycoprotein M6-b isoform 3 [...   469   e-132
Alignment   gi|NP_955772.1| myelin proteolipid protein isoform 2 [Homo sapi...   287   1e-77
Alignment   gi|NP_000524.3| myelin proteolipid protein isoform 1 [Homo sapi...   269   3e-72
Alignment   gi|NP_001122306.1| myelin proteolipid protein isoform 1 [Homo s...   269   3e-72
Alignment   gi|NP_963886.1| neuronal membrane glycoprotein M6-a isoform 3 [...   263   3e-70
Alignment   gi|NP_963885.1| neuronal membrane glycoprotein M6-a isoform 2 [...   261   1e-69
Alignment   gi|NP_005268.1| neuronal membrane glycoprotein M6-a isoform 1 [...   261   1e-69

>ref|NP_001001995.1| neuronal membrane glycoprotein M6-b isoform 1 [Homo sapiens].
          Length = 328

 Score =  476 bits (1226), Expect = e-134
 Identities = 232/261 (88%), Positives = 242/261 (92%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 61  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120

Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180

Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 240

Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASKMR 912
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M  SSN AYLKDASKM+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ 300

Query: 913 LTRISKQRKNRTCQISSLRQK 975
             +  K ++ +  Q    R K
Sbjct: 301 AYQDIKAKEEQELQDIQSRSK 321



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 27/36 (75%), Positives = 30/36 (83%)
 Frame = +3

Query: 888 LKGCKQNEAYQDIKAKEEQDLPDIQSPSKEQLNSYT 995
           LK   + +AYQDIKAKEEQ+L DIQS SKEQLNSYT
Sbjct: 293 LKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT 328


>ref|NP_001001994.1| neuronal membrane glycoprotein M6-b isoform 4 [Homo sapiens].
          Length = 246

 Score =  471 bits (1211), Expect = e-133
 Identities = 228/239 (95%), Positives = 232/239 (97%)
 Frame = +1

Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
           MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHAL
Sbjct: 1   MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHAL 60

Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 549
           LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL
Sbjct: 61  LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 120

Query: 550 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 729
           TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNA
Sbjct: 121 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNA 180

Query: 730 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
           FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK  S+
Sbjct: 181 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 239


>ref|NP_001001996.1| neuronal membrane glycoprotein M6-b isoform 2 [Homo sapiens].
          Length = 305

 Score =  469 bits (1206), Expect = e-132
 Identities = 227/238 (95%), Positives = 231/238 (97%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 61  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120

Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180

Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 240

Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK  S+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298


>ref|NP_005269.1| neuronal membrane glycoprotein M6-b isoform 3 [Homo sapiens].
          Length = 265

 Score =  469 bits (1206), Expect = e-132
 Identities = 227/238 (95%), Positives = 231/238 (97%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALL 372
           GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTN SDHALL
Sbjct: 21  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 80

Query: 373 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 552
           SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 81  SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 140

Query: 553 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAF 732
           YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIK+PQ+NGT GVEQICVDIRQYGIIPWNAF
Sbjct: 141 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 200

Query: 733 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLKDASK 906
           PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMAT+ N A LK  S+
Sbjct: 201 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 258


>ref|NP_955772.1| myelin proteolipid protein isoform 2 [Homo sapiens].
          Length = 242

 Score =  287 bits (734), Expect = 1e-77
 Identities = 135/235 (57%), Positives = 171/235 (72%)
 Frame = +1

Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFL 549
           L  VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S  FV +
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATFVGI 120

Query: 550 TYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNA 729
           TY L V WL VF  SAVPV++++N W+TC+ I  P S  +A +  +C D R YG++PWNA
Sbjct: 121 TYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNA 179

Query: 730 FPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYLK 894
           FPGK+CGS L +IC T EF M++HLFI A  GA AT+++LL +M+A + N A LK
Sbjct: 180 FPGKVCGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLK 234


>ref|NP_000524.3| myelin proteolipid protein isoform 1 [Homo sapiens].
          Length = 277

 Score =  269 bits (688), Expect = 3e-72
 Identities = 135/270 (50%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
 Frame = +1

Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 537
           L  VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S      
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120

Query: 538 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 624
                                          FV +TY L V WL VF  SAVPV++++N 
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180

Query: 625 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 804
           W+TC+ I  P S  +A +  +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239

Query: 805 FIVACAGAGATVIALLIYMMATSSN*AYLK 894
           FI A  GA AT+++LL +M+A + N A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269


>ref|NP_001122306.1| myelin proteolipid protein isoform 1 [Homo sapiens].
          Length = 277

 Score =  269 bits (688), Expect = 3e-72
 Identities = 135/270 (50%), Positives = 171/270 (63%), Gaps = 35/270 (12%)
 Frame = +1

Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHAL 369
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 370 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 537
           L  VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S      
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120

Query: 538 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 624
                                          FV +TY L V WL VF  SAVPV++++N 
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180

Query: 625 WSTCEVIKAPQSNGTAGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 804
           W+TC+ I  P S  +A +  +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 181 WTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239

Query: 805 FIVACAGAGATVIALLIYMMATSSN*AYLK 894
           FI A  GA AT+++LL +M+A + N A LK
Sbjct: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLK 269


>ref|NP_963886.1| neuronal membrane glycoprotein M6-a isoform 3 [Homo sapiens].
          Length = 267

 Score =  263 bits (671), Expect = 3e-70
 Identities = 134/270 (49%), Positives = 186/270 (68%), Gaps = 8/270 (2%)
 Frame = +1

Query: 190 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDH 363
           MGCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F  +    D 
Sbjct: 1   MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDT 60

Query: 364 ALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFV 543
             +  +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  F+
Sbjct: 61  LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFI 120

Query: 544 FLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGII 717
            LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+GI+
Sbjct: 121 MLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIV 172

Query: 718 PWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AY 888
                  KIC +  EN   +C + E  M++HLFIVA AGAGA VIA++ Y+M  S+N AY
Sbjct: 173 TIGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAY 230

Query: 889 LKDASKM-RLTRISKQRKNRTCQISSLRQK 975
           +KDA +M +   I  + +     I S R K
Sbjct: 231 VKDACRMQKYEDIKSKEEQELHDIHSTRSK 260


>ref|NP_963885.1| neuronal membrane glycoprotein M6-a isoform 2 [Homo sapiens].
          Length = 278

 Score =  261 bits (666), Expect = 1e-69
 Identities = 133/269 (49%), Positives = 185/269 (68%), Gaps = 8/269 (2%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F  +    D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546
            +  +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  F+ 
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132

Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 720
           LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+GI+ 
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184

Query: 721 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYL 891
                 KIC +  EN   +C + E  M++HLFIVA AGAGA VIA++ Y+M  S+N AY+
Sbjct: 185 IGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242

Query: 892 KDASKM-RLTRISKQRKNRTCQISSLRQK 975
           KDA +M +   I  + +     I S R K
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSK 271


>ref|NP_005268.1| neuronal membrane glycoprotein M6-a isoform 1 [Homo sapiens].
          Length = 278

 Score =  261 bits (666), Expect = 1e-69
 Identities = 133/269 (49%), Positives = 185/269 (68%), Gaps = 8/269 (2%)
 Frame = +1

Query: 193 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 366
           GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F  +    D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 367 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 546
            +  +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S  F+ 
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132

Query: 547 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 720
           LTY+  +AWLGV  F+++PV+M++N+W+ C          T  VE   +C+D+RQ+GI+ 
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184

Query: 721 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATSSN*AYL 891
                 KIC +  EN   +C + E  M++HLFIVA AGAGA VIA++ Y+M  S+N AY+
Sbjct: 185 IGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242

Query: 892 KDASKM-RLTRISKQRKNRTCQISSLRQK 975
           KDA +M +   I  + +     I S R K
Sbjct: 243 KDACRMQKYEDIKSKEEQELHDIHSTRSK 271


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,172,747
Number of extensions: 1091659
Number of successful extensions: 4164
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4145
Number of HSP's successfully gapped: 11
Length of query: 362
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 258
Effective length of database: 14,868,908
Effective search space: 3836178264
Effective search space used: 3836178264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012533
         (1087 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_ChrX                                                          373   e-100

>Sscrofa_ChrX 
||          Length = 144288218

 Score =  373 bits (188), Expect = e-100
 Identities = 188/188 (100%)
 Strand = Plus / Minus

                                                                            
Query: 193      ggctgcttcgagtgctgcatcaagtgtctgggaggagtcccctacgcctccctggtggcc 252
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11395909 ggctgcttcgagtgctgcatcaagtgtctgggaggagtcccctacgcctccctggtggcc 11395850

                                                                            
Query: 253      accatcctctgcttctcgggggtggccttgttctgcggctgtgggcatgtggccctggcg 312
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11395849 accatcctctgcttctcgggggtggccttgttctgcggctgtgggcatgtggccctggcg 11395790

                                                                            
Query: 313      ggcaccgtggccatcctggagcagcacttctccaccaacaccagtgaccatgccctgctg 372
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11395789 ggcaccgtggccatcctggagcagcacttctccaccaacaccagtgaccatgccctgctg 11395730

                        
Query: 373      agcgaggt 380
                ||||||||
Sbjct: 11395729 agcgaggt 11395722



 Score =  345 bits (174), Expect = 3e-92
 Identities = 174/174 (100%)
 Strand = Plus / Minus

                                                                            
Query: 537      gtttgtcttcctcacctacgtgctgggagtggcctggctgggcgtgttcggtttctccgc 596
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11391202 gtttgtcttcctcacctacgtgctgggagtggcctggctgggcgtgttcggtttctccgc 11391143

                                                                            
Query: 597      ggtgccggtgttcatgttctacaacatatggtccacctgtgaagtcatcaaggcccccca 656
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11391142 ggtgccggtgttcatgttctacaacatatggtccacctgtgaagtcatcaaggcccccca 11391083

                                                                      
Query: 657      gagcaacgggacagccggggtggagcagatctgtgtggacatccggcaatacgg 710
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11391082 gagcaacgggacagccggggtggagcagatctgtgtggacatccggcaatacgg 11391029



 Score =  311 bits (157), Expect = 4e-82
 Identities = 157/157 (100%)
 Strand = Plus / Minus

                                                                            
Query: 381      aatccaactgatgcagtacgtcatctacggcatcgcgtccttcttcttcttgtacgggat 440
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11394107 aatccaactgatgcagtacgtcatctacggcatcgcgtccttcttcttcttgtacgggat 11394048

                                                                            
Query: 441      catcctgttggcagagggcttctacaccaccagcgcagtcaaggagctgcatggcgagtt 500
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11394047 catcctgttggcagagggcttctacaccaccagcgcagtcaaggagctgcatggcgagtt 11393988

                                                     
Query: 501      taagacaaccgcctgtggccgctgcatcagcgggatg 537
                |||||||||||||||||||||||||||||||||||||
Sbjct: 11393987 taagacaaccgcctgtggccgctgcatcagcgggatg 11393951



 Score =  297 bits (150), Expect = 7e-78
 Identities = 202/218 (92%), Gaps = 1/218 (0%)
 Strand = Plus / Minus

                                                                            
Query: 871      tcttctaactaggcttacttaaaggatgcaagcaaaatg-aggcttaccaggatatcaaa 929
                |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 11385257 tcttctaactgggcttacttaaaggatgcaagcaaaatgcaggcttaccaggatatcaaa 11385198

                                                                            
Query: 930      gcaaaggaagaacaggacctgccagatatccagtctccgtcaaaagaacaactcaattct 989
                ||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 11385197 gcaaaggaagaacaggaactgcaagatatccagtctcggtcaaaagaacaactcaattct 11385138

                                                                            
Query: 990      tacacataaaagtctggcaaagggtctcagcccacaatttgaaagctctgaaaaatcacc 1049
                |||||||||| ||||| || |||||||||||| || | |||| |||||||| ||||||||
Sbjct: 11385137 tacacataaaggtctgccagagggtctcagccgacgagttgacagctctgacaaatcacc 11385078

                                                      
Query: 1050     aaacagctgctctgcagtccagattggttccccaccca 1087
                | ||||||||||||||||||||||  ||||||||||||
Sbjct: 11385077 agacagctgctctgcagtccagatgtgttccccaccca 11385040



 Score =  180 bits (91), Expect = 1e-42
 Identities = 91/91 (100%)
 Strand = Plus / Minus

                                                                            
Query: 104      gacctgcaaacttgtgccaccggctctgcccgtccccagggagcccgagcgtccgcggcc 163
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11536048 gacctgcaaacttgtgccaccggctctgcccgtccccagggagcccgagcgtccgcggcc 11535989

                                               
Query: 164      ctcgcccctcccgcccgtctccagccatggg 194
                |||||||||||||||||||||||||||||||
Sbjct: 11535988 ctcgcccctcccgcccgtctccagccatggg 11535958



 Score =  149 bits (75), Expect = 4e-33
 Identities = 75/75 (100%)
 Strand = Plus / Minus

                                                                            
Query: 709      ggcatcatcccttggaacgccttccccggaaaaatatgtggctctgccctggagaacatc 768
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11389225 ggcatcatcccttggaacgccttccccggaaaaatatgtggctctgccctggagaacatc 11389166

                               
Query: 769      tgcaacaccaacgag 783
                |||||||||||||||
Sbjct: 11389165 tgcaacaccaacgag 11389151



 Score =  135 bits (68), Expect = 6e-29
 Identities = 68/68 (100%)
 Strand = Plus / Minus

                                                                            
Query: 782      agttctacatgtcctaccacctgttcatcgtggcctgcgcgggagctggcgctaccgtca 841
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11388356 agttctacatgtcctaccacctgttcatcgtggcctgcgcgggagctggcgctaccgtca 11388297

                        
Query: 842      tcgccctg 849
                ||||||||
Sbjct: 11388296 tcgccctg 11388289


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,392,592
Number of extensions: 108
Number of successful extensions: 108
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 7
Length of query: 1087
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1066
Effective length of database: 2,808,413,156
Effective search space: 2993768424296
Effective search space used: 2993768424296
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)