Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012542
(1267 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543524.2| PREDICTED: similar to Beta-ureidopropionase (Be... 709 0.0
Alignment gi|XP_536134.2| PREDICTED: similar to nitrilase 1 [Canis famili... 69 7e-12
Alignment gi|XP_535718.2| PREDICTED: similar to nitrilase family, member ... 52 1e-06
>ref|XP_543524.2| PREDICTED: similar to Beta-ureidopropionase (Beta-alanine synthase)
(N-carbamoyl-beta-alanine amidohydrolase) (BUP-1) [Canis
familiaris].
Length = 384
Score = 709 bits (1830), Expect = 0.0
Identities = 339/384 (88%), Positives = 360/384 (93%)
Frame = +3
Query: 105 MAGAEFESLEQCLEKHLPLADLREVKRILYGKETRELNLPRGAFEAATKGDFELLGCAFE 284
MAG+E+ESLEQCLEKHLP ADLREVKRILYGKETR+L+LP AFEAA +GDFEL G AFE
Sbjct: 1 MAGSEWESLEQCLEKHLPPADLREVKRILYGKETRKLDLPSRAFEAALEGDFELQGYAFE 60
Query: 285 AVEEQQRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRRIAAIAEVAAMCGVNIICFQEA 464
A EEQ R PRTVRVGLVQN+TPLPAD PV KQVTALHRRI AI EVAA+CGVNIICFQEA
Sbjct: 61 AAEEQLRPPRTVRVGLVQNKTPLPADAPVAKQVTALHRRIEAIVEVAAVCGVNIICFQEA 120
Query: 465 WTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGMVVVSPILERDVEHGDVLWNT 644
WTMPFAFCTREKLPWTEFAESAEDGPTTRFCQ+L++KH MVVVSPILERD EHGD+LWNT
Sbjct: 121 WTMPFAFCTREKLPWTEFAESAEDGPTTRFCQKLAKKHDMVVVSPILERDREHGDILWNT 180
Query: 645 AVVISNSGKVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTPFGRIAVNICYGRHHPL 824
AVVISNSG VLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQT FG+IAVNICYGRHHPL
Sbjct: 181 AVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGKIAVNICYGRHHPL 240
Query: 825 NWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGEERFPNEFTS 1004
NWLM+SINGAEIIFNPSATIG LSESLWP+EARNAAIANHCFTCAINRVG+E FPNEFTS
Sbjct: 241 NWLMYSINGAEIIFNPSATIGALSESLWPVEARNAAIANHCFTCAINRVGQEHFPNEFTS 300
Query: 1005 GDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQTSDIWGFKMTG 1184
GDGKKAH+DFGYFYGSSYVAAPD SRTPGL RN+DGLLVAELDLNLCRQ +DIW FKMTG
Sbjct: 301 GDGKKAHRDFGYFYGSSYVAAPDSSRTPGLSRNKDGLLVAELDLNLCRQVNDIWNFKMTG 360
Query: 1185 RYEMYAXELAEAVKPSYSPNIVKE 1256
RYEMYA ELAEA+KP+YSPN+VKE
Sbjct: 361 RYEMYAQELAEAIKPNYSPNVVKE 384
>ref|XP_536134.2| PREDICTED: similar to nitrilase 1 [Canis familiaris].
Length = 334
Score = 69.3 bits (168), Expect = 7e-12
Identities = 84/299 (28%), Positives = 118/299 (39%), Gaps = 15/299 (5%)
Frame = +3
Query: 300 QRRPRTVRVGLVQNRTPLPADTPVVKQVTAL------HRRIAAIAEVAAMCGVNIICFQE 461
Q PR + + PL A V QVT+ + A + AA G + E
Sbjct: 38 QPSPRAMAISSSSWELPLVA----VCQVTSTPDKQENFKTCAELVREAARLGACLAFLPE 93
Query: 462 AWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGM-VVVSPILER--DVEHGDV 632
A F F R+ +E + Q L+R+ G+ + + ER D E
Sbjct: 94 A----FDFIARDPAETLRLSEPLGGNLLGEYTQ-LARECGLWLSLGGFHERGQDWEQTQK 148
Query: 633 LWNTAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYYMEG-NLGHPVFQTPFGRIAV 794
++N V+++N G V+ RK H IP G ES + G +L PV TP G+I +
Sbjct: 149 IYNCHVLLNNEGSVVATYRKTHLCDVEIPGQGPMRESNSTIPGPSLESPV-STPAGKIGL 207
Query: 795 NICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVG 974
ICY P L + GAEI+ PSA V + W + R AI C+ A + G
Sbjct: 208 AICYDMRFPELSLALAQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCG 267
Query: 975 EERFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQ 1151
H + YG S V P G+ GL +A +DLN RQ
Sbjct: 268 R---------------HHEKRASYGHSMVVDPWGTVVARCSEG-PGLCLARIDLNYLRQ 310
>ref|XP_535718.2| PREDICTED: similar to nitrilase family, member 2 [Canis
familiaris].
Length = 323
Score = 52.0 bits (123), Expect = 1e-06
Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 5/200 (2%)
Frame = +3
Query: 399 RIAAIAEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKH 578
R + AA G ++ E + P+ + E+AE G +T+ E++++
Sbjct: 70 RACGLVREAARQGAKVVSLPECFNSPYG-----TKYFPEYAEKIP-GESTQKLSEVAKEC 123
Query: 579 GMVVVSPILERDVEHGDVLWNTAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYYME 743
+ ++ + E L+NT V G +L K RK H IP F+ES
Sbjct: 124 SVYLIGGSIPE--EDAGKLYNTCAVFGPDGTLLVKYRKLHLFDIDIPGKITFHESKTLTP 181
Query: 744 GNLGHPVFQTPFGRIAVNICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEAR 923
G+ F TP+ R+ + ICY +++ G +++ P+A + W + R
Sbjct: 182 GD-SFSTFDTPYCRVGLGICYDMRFAELAQIYAQRGCQLLVYPAAFNMTTGPAHWELLQR 240
Query: 924 NAAIANHCFTCAINRVGEER 983
A+ N + + +E+
Sbjct: 241 GRAVDNQLYVATASPARDEQ 260
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,750,569
Number of extensions: 1921811
Number of successful extensions: 8093
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8067
Number of HSP's successfully gapped: 3
Length of query: 422
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 317
Effective length of database: 15,374,224
Effective search space: 4873629008
Effective search space used: 4873629008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012542
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012542
(1267 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094520.1| beta-ureidopropionase [Bos taurus]. 713 0.0
Alignment gi|NP_001033112.1| nitrilase homolog 1 [Bos taurus]. 66 7e-11
Alignment gi|NP_001033222.1| omega-amidase NIT2 [Bos taurus]. 50 3e-06
>ref|NP_001094520.1| beta-ureidopropionase [Bos taurus].
Length = 384
Score = 713 bits (1840), Expect = 0.0
Identities = 340/384 (88%), Positives = 361/384 (94%)
Frame = +3
Query: 105 MAGAEFESLEQCLEKHLPLADLREVKRILYGKETRELNLPRGAFEAATKGDFELLGCAFE 284
MAG+ FESLEQCLEKHLPLA+L+EVKR+LYGKETR+L+LP A EAA++GDFEL G AFE
Sbjct: 1 MAGSGFESLEQCLEKHLPLAELQEVKRLLYGKETRKLDLPGAALEAASRGDFELQGYAFE 60
Query: 285 AVEEQQRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRRIAAIAEVAAMCGVNIICFQEA 464
A EQQRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRR+ A+ EVAAMCGVNIICFQEA
Sbjct: 61 AAAEQQRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRRMEAVVEVAAMCGVNIICFQEA 120
Query: 465 WTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGMVVVSPILERDVEHGDVLWNT 644
WTMPFAFCTREKLPWTEFAESAEDGPT +FCQEL+RKHGMVVVSP+LERD +HGDVLWNT
Sbjct: 121 WTMPFAFCTREKLPWTEFAESAEDGPTIKFCQELARKHGMVVVSPVLERDSDHGDVLWNT 180
Query: 645 AVVISNSGKVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTPFGRIAVNICYGRHHPL 824
AVV+++SG VLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQT FGRIAVNICYGRHHPL
Sbjct: 181 AVVVASSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPL 240
Query: 825 NWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGEERFPNEFTS 1004
NWLM+SINGAEIIFNPSATIG LSESLWPIEARNAAIANHCFTCAINRVG E FPNEFTS
Sbjct: 241 NWLMYSINGAEIIFNPSATIGALSESLWPIEARNAAIANHCFTCAINRVGREHFPNEFTS 300
Query: 1005 GDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQTSDIWGFKMTG 1184
GDGKKAH+DFGYFYGSSYVAAPDGSRTPGL R RDGLLVAELDLNLCRQ +DIWGFKMTG
Sbjct: 301 GDGKKAHRDFGYFYGSSYVAAPDGSRTPGLSRTRDGLLVAELDLNLCRQVNDIWGFKMTG 360
Query: 1185 RYEMYAXELAEAVKPSYSPNIVKE 1256
RYEMYA ELAEAVKP Y+P IVKE
Sbjct: 361 RYEMYARELAEAVKPDYTPKIVKE 384
>ref|NP_001033112.1| nitrilase homolog 1 [Bos taurus].
Length = 328
Score = 65.9 bits (159), Expect = 7e-11
Identities = 54/186 (29%), Positives = 74/186 (39%), Gaps = 5/186 (2%)
Frame = +3
Query: 609 RDVEHGDVLWNTAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYYMEGNLGHPVFQT 773
+D E ++N V+++N G V+ RK H IP G ES + G T
Sbjct: 135 QDWEQTQKIYNCHVIMNNMGSVVATYRKTHLCDVEIPGQGPMRESNSTIPGPSLESPIST 194
Query: 774 PFGRIAVNICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFT 953
P G+I + ICY P L GAEI+ PSA V + W + R AI C+
Sbjct: 195 PAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYV 254
Query: 954 CAINRVGEERFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELD 1133
A + G H + YG S V P G+ GL +A +D
Sbjct: 255 VAAAQCGR---------------HHEKRASYGHSMVVDPWGTVVARCSEG-PGLCLARID 298
Query: 1134 LNLCRQ 1151
LN +Q
Sbjct: 299 LNYLQQ 304
>ref|NP_001033222.1| omega-amidase NIT2 [Bos taurus].
Length = 276
Score = 50.4 bits (119), Expect = 3e-06
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 6/201 (2%)
Frame = +3
Query: 399 RIAAIAEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKH 578
R + A+ G I+ E + P+ + ++AE G +T+ E++++
Sbjct: 23 RACGLIREASKQGAQIVSLPECFNSPYG-----TKYFPDYAEKIP-GDSTQKLSEVAKEC 76
Query: 579 GMVVVS-PILERDVEHGDVLWNTAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYYM 740
M V+ I E+D L+NT V G +L K RK H +P F ES
Sbjct: 77 SMYVIGGSIPEKDAGK---LYNTCAVFGPDGTLLVKHRKLHLFDIDVPGKITFQESETLS 133
Query: 741 EGNLGHPVFQTPFGRIAVNICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEA 920
G+ +F TP+ R+ + ICY +++ G +++ P A + W +
Sbjct: 134 PGD-SFSLFDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQ 192
Query: 921 RNAAIANHCFTCAINRVGEER 983
R A+ N + + +E+
Sbjct: 193 RGRAVDNQVYVATASPARDEK 213
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,151,367
Number of extensions: 1852387
Number of successful extensions: 8069
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8025
Number of HSP's successfully gapped: 3
Length of query: 422
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,207,134
Effective search space: 4503661478
Effective search space used: 4503661478
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012542
(1267 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929289.1| PREDICTED: beta-ureidopropionase [Sus scrofa]. 788 0.0
Alignment gi|XP_001927783.3| PREDICTED: nitrilase homolog 1 isoform 2 [Su... 70 2e-12
Alignment gi|XP_003132757.2| PREDICTED: omega-amidase NIT2-like [Sus scro... 49 6e-06
>ref|XP_001929289.1| PREDICTED: beta-ureidopropionase [Sus scrofa].
Length = 384
Score = 788 bits (2036), Expect = 0.0
Identities = 383/384 (99%), Positives = 383/384 (99%)
Frame = +3
Query: 105 MAGAEFESLEQCLEKHLPLADLREVKRILYGKETRELNLPRGAFEAATKGDFELLGCAFE 284
MAGAEFESLEQCLEKHLPLADLREVKRILYGKETRELNLPRGAFEAATKGDFELLGCAFE
Sbjct: 1 MAGAEFESLEQCLEKHLPLADLREVKRILYGKETRELNLPRGAFEAATKGDFELLGCAFE 60
Query: 285 AVEEQQRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRRIAAIAEVAAMCGVNIICFQEA 464
AVEEQQRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRRIAAIAEVAAMCGVNIICFQEA
Sbjct: 61 AVEEQQRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRRIAAIAEVAAMCGVNIICFQEA 120
Query: 465 WTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGMVVVSPILERDVEHGDVLWNT 644
WTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGMVVVSPILERDVEHGDVLWNT
Sbjct: 121 WTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGMVVVSPILERDVEHGDVLWNT 180
Query: 645 AVVISNSGKVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTPFGRIAVNICYGRHHPL 824
AVVISNSGKVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTPFGRIAVNICYGRHHPL
Sbjct: 181 AVVISNSGKVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTPFGRIAVNICYGRHHPL 240
Query: 825 NWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGEERFPNEFTS 1004
NWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGEERFPNEFTS
Sbjct: 241 NWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGEERFPNEFTS 300
Query: 1005 GDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQTSDIWGFKMTG 1184
GDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQTSDIWGFKMTG
Sbjct: 301 GDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQTSDIWGFKMTG 360
Query: 1185 RYEMYAXELAEAVKPSYSPNIVKE 1256
RYEMYA ELAEAVKPSYSPNIVKE
Sbjct: 361 RYEMYAQELAEAVKPSYSPNIVKE 384
>ref|XP_001927783.3| PREDICTED: nitrilase homolog 1 isoform 2 [Sus scrofa].
Length = 328
Score = 70.5 bits (171), Expect = 2e-12
Identities = 83/298 (27%), Positives = 117/298 (39%), Gaps = 14/298 (4%)
Frame = +3
Query: 300 QRRPRTVRVGLVQNRTPLPADTPVVKQVTAL------HRRIAAIAEVAAMCGVNIICFQE 461
Q RPR++ + PL A V QVT+ + A + AA G + E
Sbjct: 32 QPRPRSMAISSSSWDLPLVA----VCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPE 87
Query: 462 AWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGM-VVVSPILER--DVEHGDV 632
A F F R+ +E + Q L+R+ G+ + + ER D E
Sbjct: 88 A----FDFIGRDPEETLRLSEPLGGKLLGEYTQ-LARECGLWLSLGGFHERGQDWEQTQK 142
Query: 633 LWNTAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYYMEGNLGHPVFQTPFGRIAVN 797
++N V+++N+G V+ RK H IP G ES + G P TP G+I +
Sbjct: 143 IYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLA 202
Query: 798 ICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGE 977
ICY P L GAEI+ PSA V + W + R AI C+ A + G
Sbjct: 203 ICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGR 262
Query: 978 ERFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQ 1151
H + YG S V P G+ GL +A +DLN RQ
Sbjct: 263 ---------------HHEKRASYGHSMVVDPWGTVVARCSEG-PGLCLARIDLNYLRQ 304
>ref|XP_003132757.2| PREDICTED: omega-amidase NIT2-like [Sus scrofa].
Length = 230
Score = 48.9 bits (115), Expect = 6e-06
Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 5/182 (2%)
Frame = +3
Query: 399 RIAAIAEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKH 578
R + AA G II E + P+ + E+AE G +T+ E++++
Sbjct: 30 RACGFIQEAAKQGAKIISLPECFNSPYG-----TKYFPEYAEKIP-GDSTQKLSEVAKEC 83
Query: 579 GMVVVSPILERDVEHGDVLWNTAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYYME 743
G+ V+ + E L+NT V G +L K RK H +P F ES
Sbjct: 84 GVYVIGGSIPE--EDAGKLYNTCAVFGPDGTLLAKYRKLHLFDIDVPGKITFQESKTLSP 141
Query: 744 GNLGHPVFQTPFGRIAVNICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEAR 923
G+ F TP+ R+ + ICY +++ G +++ P A + W + R
Sbjct: 142 GD-SFSTFDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQR 200
Query: 924 NA 929
A
Sbjct: 201 VA 202
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,948,098
Number of extensions: 1201181
Number of successful extensions: 5107
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5082
Number of HSP's successfully gapped: 3
Length of query: 422
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 320
Effective length of database: 8,804,438
Effective search space: 2817420160
Effective search space used: 2817420160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012542
(1267 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598756.1| beta-ureidopropionase [Mus musculus]. 658 0.0
Alignment gi|NP_036179.1| nitrilase homolog 1 isoform 1 [Mus musculus]. 72 9e-13
Alignment gi|NP_001229509.1| nitrilase homolog 1 isoform 2 [Mus musculus]. 72 9e-13
Alignment gi|NP_075664.1| omega-amidase NIT2 [Mus musculus]. 52 1e-06
>ref|NP_598756.1| beta-ureidopropionase [Mus musculus].
Length = 393
Score = 658 bits (1698), Expect = 0.0
Identities = 318/384 (82%), Positives = 344/384 (89%)
Frame = +3
Query: 105 MAGAEFESLEQCLEKHLPLADLREVKRILYGKETRELNLPRGAFEAATKGDFELLGCAFE 284
MAG E++SLEQCLEKHLP DL +VKRILYGK+TR L+LPR A +AA++ +FEL G AF
Sbjct: 1 MAGPEWQSLEQCLEKHLPPDDLAQVKRILYGKQTRNLDLPREALKAASERNFELKGYAFG 60
Query: 285 AVEEQQRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRRIAAIAEVAAMCGVNIICFQEA 464
A +EQQR P+ VRVGLVQNR PLP PV +QV+ALH+ I IAEVAAMCGVNIICFQEA
Sbjct: 61 AAKEQQRCPQIVRVGLVQNRIPLPTSAPVAEQVSALHKSIEEIAEVAAMCGVNIICFQEA 120
Query: 465 WTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGMVVVSPILERDVEHGDVLWNT 644
W MPFAFCTREKLPWTEFAESAEDG TTRFCQ+L++KH MVVVSPILERD EHG VLWNT
Sbjct: 121 WNMPFAFCTREKLPWTEFAESAEDGLTTRFCQKLAKKHNMVVVSPILERDREHGGVLWNT 180
Query: 645 AVVISNSGKVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTPFGRIAVNICYGRHHPL 824
AVVISNSG V+GKTRKNHIPRVGDFNESTYYMEGNLGHPVFQT FGRIAVNICYGRHHPL
Sbjct: 181 AVVISNSGLVMGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPL 240
Query: 825 NWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGEERFPNEFTS 1004
NWLM+SINGAEIIFNPSATIG LSESLWPIEARNAAIANHCFTCA+NRVG+E FPNEFTS
Sbjct: 241 NWLMYSINGAEIIFNPSATIGELSESLWPIEARNAAIANHCFTCALNRVGQEHFPNEFTS 300
Query: 1005 GDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQTSDIWGFKMTG 1184
GDGKKAH D GYFYGSSYVAAPDGSRTPGL RN+DGLLV EL+LNLC+Q +D W FKMTG
Sbjct: 301 GDGKKAHHDLGYFYGSSYVAAPDGSRTPGLSRNQDGLLVTELNLNLCQQINDFWTFKMTG 360
Query: 1185 RYEMYAXELAEAVKPSYSPNIVKE 1256
R EMYA ELAEAVKP+YSPNIVKE
Sbjct: 361 RLEMYARELAEAVKPNYSPNIVKE 384
>ref|NP_036179.1| nitrilase homolog 1 isoform 1 [Mus musculus].
Length = 323
Score = 72.0 bits (175), Expect = 9e-13
Identities = 53/186 (28%), Positives = 78/186 (41%), Gaps = 5/186 (2%)
Frame = +3
Query: 609 RDVEHGDVLWNTAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYYMEGNLGHPVFQT 773
+D E ++N V++++ G V+ RK H IP G ES Y G P +T
Sbjct: 130 QDWEQNQKIYNCHVLLNSKGSVVASYRKTHLCDVEIPGQGPMRESNYTKPGGTLEPPVKT 189
Query: 774 PFGRIAVNICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFT 953
P G++ + ICY P L + GAEI+ PSA V + W + R AI + C+
Sbjct: 190 PAGKVGLAICYDMRFPELSLKLAQAGAEILTYPSAFGSVTGPAHWEVLLRARAIESQCYV 249
Query: 954 CAINRVGEERFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELD 1133
A + G H + YG S V P G+ GL +A +D
Sbjct: 250 IAAAQCGR---------------HHETRASYGHSMVVDPWGTVVARCSEG-PGLCLARID 293
Query: 1134 LNLCRQ 1151
L+ +Q
Sbjct: 294 LHFLQQ 299
>ref|NP_001229509.1| nitrilase homolog 1 isoform 2 [Mus musculus].
Length = 290
Score = 72.0 bits (175), Expect = 9e-13
Identities = 53/186 (28%), Positives = 78/186 (41%), Gaps = 5/186 (2%)
Frame = +3
Query: 609 RDVEHGDVLWNTAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYYMEGNLGHPVFQT 773
+D E ++N V++++ G V+ RK H IP G ES Y G P +T
Sbjct: 97 QDWEQNQKIYNCHVLLNSKGSVVASYRKTHLCDVEIPGQGPMRESNYTKPGGTLEPPVKT 156
Query: 774 PFGRIAVNICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFT 953
P G++ + ICY P L + GAEI+ PSA V + W + R AI + C+
Sbjct: 157 PAGKVGLAICYDMRFPELSLKLAQAGAEILTYPSAFGSVTGPAHWEVLLRARAIESQCYV 216
Query: 954 CAINRVGEERFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELD 1133
A + G H + YG S V P G+ GL +A +D
Sbjct: 217 IAAAQCGR---------------HHETRASYGHSMVVDPWGTVVARCSEG-PGLCLARID 260
Query: 1134 LNLCRQ 1151
L+ +Q
Sbjct: 261 LHFLQQ 266
>ref|NP_075664.1| omega-amidase NIT2 [Mus musculus].
Length = 276
Score = 51.6 bits (122), Expect = 1e-06
Identities = 44/202 (21%), Positives = 82/202 (40%), Gaps = 7/202 (3%)
Frame = +3
Query: 399 RIAAIAEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAED--GPTTRFCQELSR 572
R ++ AA G NI+ E + P+ T F + AE G +T+ E+++
Sbjct: 23 RACSLVREAAKQGANIVSLPECFNSPYGT--------TYFPDYAEKIPGESTQKLSEVAK 74
Query: 573 KHGMVVVSPILERDVEHGDVLWNTAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYY 737
+ + ++ + E L+NT V G +L K RK H +P F ES
Sbjct: 75 ESSIYLIGGSIPE--EDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTL 132
Query: 738 MEGNLGHPVFQTPFGRIAVNICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIE 917
G+ F TP+ ++ + ICY +++ G +++ P A + W +
Sbjct: 133 SPGD-SFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELL 191
Query: 918 ARNAAIANHCFTCAINRVGEER 983
R A+ N + + +++
Sbjct: 192 QRARAVDNQVYVATASPARDDK 213
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,228,463
Number of extensions: 1543962
Number of successful extensions: 6381
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6349
Number of HSP's successfully gapped: 4
Length of query: 422
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 318
Effective length of database: 12,493,815
Effective search space: 3973033170
Effective search space used: 3973033170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012542
(1267 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057411.1| beta-ureidopropionase [Homo sapiens]. 690 0.0
Alignment gi|NP_005591.1| nitrilase homolog 1 isoform 1 [Homo sapiens]. 69 7e-12
Alignment gi|NP_001172022.1| nitrilase homolog 1 isoform 3 [Homo sapiens]. 66 6e-11
Alignment gi|NP_001172023.1| nitrilase homolog 1 isoform 4 [Homo sapiens]. 66 8e-11
Alignment gi|NP_001172021.1| nitrilase homolog 1 isoform 2 [Homo sapiens]. 52 2e-06
Alignment gi|NP_064587.1| omega-amidase NIT2 [Homo sapiens]. 51 3e-06
>ref|NP_057411.1| beta-ureidopropionase [Homo sapiens].
Length = 384
Score = 690 bits (1781), Expect = 0.0
Identities = 332/384 (86%), Positives = 354/384 (92%)
Frame = +3
Query: 105 MAGAEFESLEQCLEKHLPLADLREVKRILYGKETRELNLPRGAFEAATKGDFELLGCAFE 284
MAGAE++SLE+CLEKHLPL DL+EVKR+LYGKE R+L+LPR AFEAA++ DFEL G AFE
Sbjct: 1 MAGAEWKSLEECLEKHLPLPDLQEVKRVLYGKELRKLDLPREAFEAASREDFELQGYAFE 60
Query: 285 AVEEQQRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRRIAAIAEVAAMCGVNIICFQEA 464
A EEQ RRPR V VGLVQNR PLPA+ PV +QV+ALHRRI AI EVAAMCGVNIICFQEA
Sbjct: 61 AAEEQLRRPRIVHVGLVQNRIPLPANAPVAEQVSALHRRIKAIVEVAAMCGVNIICFQEA 120
Query: 465 WTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGMVVVSPILERDVEHGDVLWNT 644
WTMPFAFCTREKLPWTEFAESAEDGPTTRFCQ+L++ H MVVVSPILERD EHGDVLWNT
Sbjct: 121 WTMPFAFCTREKLPWTEFAESAEDGPTTRFCQKLAKNHDMVVVSPILERDSEHGDVLWNT 180
Query: 645 AVVISNSGKVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTPFGRIAVNICYGRHHPL 824
AVVISNSG VLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQT FGRIAVNICYGRHHPL
Sbjct: 181 AVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPL 240
Query: 825 NWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGEERFPNEFTS 1004
NWLM+SINGAEIIFNPSATIG LSESLWPIEARNAAIANHCFTCAINRVG E FPNEFTS
Sbjct: 241 NWLMYSINGAEIIFNPSATIGALSESLWPIEARNAAIANHCFTCAINRVGTEHFPNEFTS 300
Query: 1005 GDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQTSDIWGFKMTG 1184
GDGKKAHQDFGYFYGSSYVAAPD SRTPGL R+RDGLLVA+LDLNLC+Q +D+W FKMTG
Sbjct: 301 GDGKKAHQDFGYFYGSSYVAAPDSSRTPGLSRSRDGLLVAKLDLNLCQQVNDVWNFKMTG 360
Query: 1185 RYEMYAXELAEAVKPSYSPNIVKE 1256
RYEMYA ELAEAVK +YSP IVKE
Sbjct: 361 RYEMYARELAEAVKSNYSPTIVKE 384
>ref|NP_005591.1| nitrilase homolog 1 isoform 1 [Homo sapiens].
Length = 327
Score = 69.3 bits (168), Expect = 7e-12
Identities = 83/299 (27%), Positives = 119/299 (39%), Gaps = 15/299 (5%)
Frame = +3
Query: 300 QRRPRTVRVGLVQNRTPLPADTPVVKQVTAL------HRRIAAIAEVAAMCGVNIICFQE 461
Q RPR + + PL A V QVT+ + A + AA G + E
Sbjct: 31 QPRPRAMAISSSSCELPLVA----VCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPE 86
Query: 462 AWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGM-VVVSPILER--DVEHGDV 632
A F F R+ +E G +L+R+ G+ + + ER D E
Sbjct: 87 A----FDFIARDPAETLHLSEPL-GGKLLEEYTQLARECGLWLSLGGFHERGQDWEQTQK 141
Query: 633 LWNTAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYYMEG-NLGHPVFQTPFGRIAV 794
++N V++++ G V+ RK H IP G ES M G +L PV TP G+I +
Sbjct: 142 IYNCHVLLNSKGAVVATYRKTHLCDVEIPGQGPMCESNSTMPGPSLESPV-STPAGKIGL 200
Query: 795 NICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVG 974
+CY P L + GAEI+ PSA + + W + R AI C+ A + G
Sbjct: 201 AVCYDMRFPELSLALAQAGAEILTYPSAFGSITGPAHWEVLLRARAIETQCYVVAAAQCG 260
Query: 975 EERFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQ 1151
H + YG S V P G+ GL +A +DLN RQ
Sbjct: 261 R---------------HHEKRASYGHSMVVDPWGTVVARCSEG-PGLCLARIDLNYLRQ 303
>ref|NP_001172022.1| nitrilase homolog 1 isoform 3 [Homo sapiens].
Length = 312
Score = 66.2 bits (160), Expect = 6e-11
Identities = 81/296 (27%), Positives = 117/296 (39%), Gaps = 15/296 (5%)
Frame = +3
Query: 309 PRTVRVGLVQNRTPLPADTPVVKQVTAL------HRRIAAIAEVAAMCGVNIICFQEAWT 470
PR + + PL A V QVT+ + A + AA G + EA
Sbjct: 19 PRAMAISSSSCELPLVA----VCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEA-- 72
Query: 471 MPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGM-VVVSPILER--DVEHGDVLWN 641
F F R+ +E G +L+R+ G+ + + ER D E ++N
Sbjct: 73 --FDFIARDPAETLHLSEPL-GGKLLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYN 129
Query: 642 TAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYYMEG-NLGHPVFQTPFGRIAVNIC 803
V++++ G V+ RK H IP G ES M G +L PV TP G+I + +C
Sbjct: 130 CHVLLNSKGAVVATYRKTHLCDVEIPGQGPMCESNSTMPGPSLESPV-STPAGKIGLAVC 188
Query: 804 YGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGEER 983
Y P L + GAEI+ PSA + + W + R AI C+ A + G
Sbjct: 189 YDMRFPELSLALAQAGAEILTYPSAFGSITGPAHWEVLLRARAIETQCYVVAAAQCGR-- 246
Query: 984 FPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQ 1151
H + YG S V P G+ GL +A +DLN RQ
Sbjct: 247 -------------HHEKRASYGHSMVVDPWGTVVARCSEG-PGLCLARIDLNYLRQ 288
>ref|NP_001172023.1| nitrilase homolog 1 isoform 4 [Homo sapiens].
Length = 291
Score = 65.9 bits (159), Expect = 8e-11
Identities = 56/187 (29%), Positives = 79/187 (42%), Gaps = 6/187 (3%)
Frame = +3
Query: 609 RDVEHGDVLWNTAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYYMEG-NLGHPVFQ 770
+D E ++N V++++ G V+ RK H IP G ES M G +L PV
Sbjct: 98 QDWEQTQKIYNCHVLLNSKGAVVATYRKTHLCDVEIPGQGPMCESNSTMPGPSLESPV-S 156
Query: 771 TPFGRIAVNICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCF 950
TP G+I + +CY P L + GAEI+ PSA + + W + R AI C+
Sbjct: 157 TPAGKIGLAVCYDMRFPELSLALAQAGAEILTYPSAFGSITGPAHWEVLLRARAIETQCY 216
Query: 951 TCAINRVGEERFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAEL 1130
A + G H + YG S V P G+ GL +A +
Sbjct: 217 VVAAAQCGR---------------HHEKRASYGHSMVVDPWGTVVARCSEG-PGLCLARI 260
Query: 1131 DLNLCRQ 1151
DLN RQ
Sbjct: 261 DLNYLRQ 267
>ref|NP_001172021.1| nitrilase homolog 1 isoform 2 [Homo sapiens].
Length = 243
Score = 51.6 bits (122), Expect = 2e-06
Identities = 62/218 (28%), Positives = 91/218 (41%), Gaps = 15/218 (6%)
Frame = +3
Query: 300 QRRPRTVRVGLVQNRTPLPADTPVVKQVTAL------HRRIAAIAEVAAMCGVNIICFQE 461
Q RPR + + PL A V QVT+ + A + AA G + E
Sbjct: 31 QPRPRAMAISSSSCELPLVA----VCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPE 86
Query: 462 AWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGM-VVVSPILER--DVEHGDV 632
A F F R+ +E G +L+R+ G+ + + ER D E
Sbjct: 87 A----FDFIARDPAETLHLSEPL-GGKLLEEYTQLARECGLWLSLGGFHERGQDWEQTQK 141
Query: 633 LWNTAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYYMEG-NLGHPVFQTPFGRIAV 794
++N V++++ G V+ RK H IP G ES M G +L PV TP G+I +
Sbjct: 142 IYNCHVLLNSKGAVVATYRKTHLCDVEIPGQGPMCESNSTMPGPSLESPV-STPAGKIGL 200
Query: 795 NICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLW 908
+CY P L + GAEI+ PSA + + W
Sbjct: 201 AVCYDMRFPELSLALAQAGAEILTYPSAFGSITGPAHW 238
>ref|NP_064587.1| omega-amidase NIT2 [Homo sapiens].
Length = 276
Score = 50.8 bits (120), Expect = 3e-06
Identities = 43/200 (21%), Positives = 81/200 (40%), Gaps = 5/200 (2%)
Frame = +3
Query: 399 RIAAIAEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKH 578
R + AA G I+ E + P+ + E+AE G +T+ E++++
Sbjct: 23 RACSFIREAATQGAKIVSLPECFNSPYG-----AKYFPEYAEKIP-GESTQKLSEVAKEC 76
Query: 579 GMVVVSPILERDVEHGDVLWNTAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYYME 743
+ ++ + E L+NT V G +L K RK H +P F ES
Sbjct: 77 SIYLIGGSIPE--EDAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSP 134
Query: 744 GNLGHPVFQTPFGRIAVNICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEAR 923
G+ F TP+ R+ + ICY +++ G +++ P A + W + R
Sbjct: 135 GD-SFSTFDTPYCRVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQR 193
Query: 924 NAAIANHCFTCAINRVGEER 983
+ A+ N + + +++
Sbjct: 194 SRAVDNQVYVATASPARDDK 213
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,486,930
Number of extensions: 1866951
Number of successful extensions: 8056
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8008
Number of HSP's successfully gapped: 6
Length of query: 422
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,835,944
Effective search space: 4702994248
Effective search space used: 4702994248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012542
(1267 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 414 e-113
>Sscrofa_Chr14
|| Length = 153851969
Score = 414 bits (209), Expect = e-113
Identities = 209/209 (100%)
Strand = Plus / Plus
Query: 1 gaagggagggagttcctgccaggcaactgtctcctcctcttccaactggaggcaaagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52975024 gaagggagggagttcctgccaggcaactgtctcctcctcttccaactggaggcaaagggc 52975083
Query: 61 agcaggcagtttggatcgggacgaggcagctgcagacaccagacatggcgggggccgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52975084 agcaggcagtttggatcgggacgaggcagctgcagacaccagacatggcgggggccgaat 52975143
Query: 121 ttgagtcgctggagcagtgcttggagaagcatctgccactcgcagacctgcgggaggtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52975144 ttgagtcgctggagcagtgcttggagaagcatctgccactcgcagacctgcgggaggtca 52975203
Query: 181 aacgcatcctctatggcaaggagaccagg 209
|||||||||||||||||||||||||||||
Sbjct: 52975204 aacgcatcctctatggcaaggagaccagg 52975232
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 207 agggagcttaacctgcccagaggtgcttttgaagccgccaccaagggggacttcgagctg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52981647 agggagcttaacctgcccagaggtgcttttgaagccgccaccaagggggacttcgagctg 52981706
Query: 267 ctgggctgtgcctttgaggccgtagaggagcagcagaggcggccccggactgtgcgtgtg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52981707 ctgggctgtgcctttgaggccgtagaggagcagcagaggcggccccggactgtgcgtgtg 52981766
Query: 327 gggcttgttcagaacagaacccccctccccgcggacactcctgtggtgaaacaggt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52981767 gggcttgttcagaacagaacccccctccccgcggacactcctgtggtgaaacaggt 52981822
Score = 341 bits (172), Expect = 6e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 724 agtccacttactacatggagggaaacctgggccaccccgtgttccagaccccattcggga 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52994127 agtccacttactacatggagggaaacctgggccaccccgtgttccagaccccattcggga 52994186
Query: 784 ggatcgccgtaaacatctgctatgggcggcaccaccccctcaactggctcatgttcagca 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52994187 ggatcgccgtaaacatctgctatgggcggcaccaccccctcaactggctcatgttcagca 52994246
Query: 844 tcaacggggccgagatcatcttcaacccctcggccaccattggggtgctcag 895
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52994247 tcaacggggccgagatcatcttcaacccctcggccaccattggggtgctcag 52994298
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 562 agctgtcgcggaagcatggcatggtagtggtgtcccccatcctggagcgtgacgtggagc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52991755 agctgtcgcggaagcatggcatggtagtggtgtcccccatcctggagcgtgacgtggagc 52991814
Query: 622 acggggacgtcttgtggaacacagccgtggtgatctccaactcgggaaaggtcctgggga 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52991815 acggggacgtcttgtggaacacagccgtggtgatctccaactcgggaaaggtcctgggga 52991874
Query: 682 agacaaggaaaaaccacatccccagagtgggtgatttcaacgag 725
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52991875 agacaaggaaaaaccacatccccagagtgggtgatttcaacgag 52991918
Score = 303 bits (153), Expect = 1e-79
Identities = 156/157 (99%)
Strand = Plus / Plus
Query: 1019 agctcaccaggacttcggctacttttatggctcgagctacgtggcagcccctgacggcag 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53001179 agctcaccaggacttcggctacttttatggctcgagctacgtggcagcccctgacggcag 53001238
Query: 1079 ccgcacccccgggctcccgcgtaaccgggatgggctgctggttgctgaactcgatctcaa 1138
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 53001239 ccgcacccccgggctcccgcgtaaccgggatgggctgctggttgctgagctcgatctcaa 53001298
Query: 1139 cctctgccggcagacaagtgacatctggggcttcaag 1175
|||||||||||||||||||||||||||||||||||||
Sbjct: 53001299 cctctgccggcagacaagtgacatctggggcttcaag 53001335
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 469 ccatgccctttgctttctgtacgagagagaagctcccgtggacagaatttgccgagtctg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52989891 ccatgccctttgctttctgtacgagagagaagctcccgtggacagaatttgccgagtctg 52989950
Query: 529 cagaggatggaccaaccaccagattctgtcaagag 563
|||||||||||||||||||||||||||||||||||
Sbjct: 52989951 cagaggatggaccaaccaccagattctgtcaagag 52989985
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 378 caggtcactgcccttcacagacgtatcgcggccattgcagaggtggctgccatgtgtgga 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52983113 caggtcactgcccttcacagacgtatcgcggccattgcagaggtggctgccatgtgtgga 52983172
Query: 438 gtcaacatcatctgtttccaggaggcgtgga 468
|||||||||||||||||||||||||||||||
Sbjct: 52983173 gtcaacatcatctgtttccaggaggcgtgga 52983203
Score = 180 bits (91), Expect = 1e-42
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 1174 agatgacgggcagatacgagatgtacgctcangagcttgccgaagctgtcaagcccagct 1233
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 53002820 agatgacgggcagatacgagatgtacgctcaggagcttgccgaagctgtcaagcccagct 53002879
Query: 1234 acagccccaatatcgtgaaagagtagcaggctca 1267
||||||||||||||||||||||||||||||||||
Sbjct: 53002880 acagccccaatatcgtgaaagagtagcaggctca 53002913
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 893 cagtgagtccctgtggccaatcgaggccagaaatgcagccattgccaatcactgcttcac 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52999025 cagtgagtccctgtggccaatcgaggccagaaatgcagccattgccaatcactgcttcac 52999084
Query: 953 ctgcgccatcaaccgtgtgggtgagg 978
||||||||||||||||||||||||||
Sbjct: 52999085 ctgcgccatcaaccgtgtgggtgagg 52999110
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 976 aggagcgcttccccaatgagttcacctctggagatgggaagaaag 1020
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53000067 aggagcgcttccccaatgagttcacctctggagatgggaagaaag 53000111
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,908,820
Number of extensions: 146
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 10
Length of query: 1267
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1246
Effective length of database: 2,808,413,156
Effective search space: 3499282792376
Effective search space used: 3499282792376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)