Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012547
(1300 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848303.1| PREDICTED: similar to T-complex protein 1, epsi... 611 e-176
Alignment gi|XP_855829.1| PREDICTED: similar to T-complex protein 1, epsi... 592 e-171
Alignment gi|XP_539390.2| PREDICTED: similar to T-complex protein 1, delt... 170 2e-42
Alignment gi|XP_537245.2| PREDICTED: similar to chaperonin containing TCP... 155 1e-37
Alignment gi|XP_862600.1| PREDICTED: similar to T-complex protein 1, eta ... 149 8e-36
Alignment gi|XP_855793.1| PREDICTED: similar to T-complex protein 1, eta ... 148 1e-35
Alignment gi|XP_850875.1| PREDICTED: similar to T-complex protein 1, eta ... 148 1e-35
Alignment gi|XP_866515.1| PREDICTED: similar to T-complex protein 1, eta ... 148 1e-35
Alignment gi|XP_848245.1| PREDICTED: similar to T-complex protein 1, eta ... 148 1e-35
Alignment gi|XP_866608.1| PREDICTED: similar to T-complex protein 1, eta ... 148 1e-35
>ref|XP_848303.1| PREDICTED: similar to T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) isoform 1 [Canis
familiaris].
Length = 541
Score = 611 bits (1575), Expect(2) = e-176
Identities = 318/370 (85%), Positives = 326/370 (88%), Gaps = 1/370 (0%)
Frame = +2
Query: 149 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 328
MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTM+TSLGPNGLDKM
Sbjct: 1 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKM 60
Query: 329 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXX 508
MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD
Sbjct: 61 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA 120
Query: 509 XQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNS 688
QLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVD+KDTEPLIQTAKTTLGSKVVNS
Sbjct: 121 EQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNS 180
Query: 689 CHRQMAEIAVNAVLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 868
CHRQMAEIAVNAVLTVADM RRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
Sbjct: 181 CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 240
Query: 869 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLA 1048
KQVE+AKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMI+QIKETGANLA
Sbjct: 241 KQVENAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLA 300
Query: 1049 ICQWGFGDEANHLLLQKNLPGVRWVGSPESS*SPSHRGAHRA-AVLEAHAXKLXFPGLLX 1225
ICQWGF DEANHLLLQ NLP VRWVG PE G E + KL F GL+
Sbjct: 301 ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGLVK 360
Query: 1226 EISFGTTRDR 1255
EISFGTT+D+
Sbjct: 361 EISFGTTKDK 370
Score = 28.9 bits (63), Expect(2) = e-176
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 1252 QMLVIKXCKNSRAVTI 1299
+MLVI+ CKNSRAVT+
Sbjct: 370 KMLVIEQCKNSRAVTV 385
>ref|XP_855829.1| PREDICTED: similar to T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) isoform 2 [Canis
familiaris].
Length = 541
Score = 592 bits (1525), Expect(2) = e-171
Identities = 311/370 (84%), Positives = 320/370 (86%), Gaps = 1/370 (0%)
Frame = +2
Query: 149 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 328
MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTM+TSLGPNGLDKM
Sbjct: 1 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKM 60
Query: 329 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXX 508
MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD
Sbjct: 61 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA 120
Query: 509 XQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNS 688
QLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVD+KDTEPLIQTAKTTLGSKV +
Sbjct: 121 EQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVFSK 180
Query: 689 CHRQMAEIAVNAVLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 868
MAEIAVNAVLTVADM RRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
Sbjct: 181 KKDIMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 240
Query: 869 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLA 1048
KQVE+AKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMI+QIKETGANLA
Sbjct: 241 KQVENAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLA 300
Query: 1049 ICQWGFGDEANHLLLQKNLPGVRWVGSPESS*SPSHRGAHRA-AVLEAHAXKLXFPGLLX 1225
ICQWGF DEANHLLLQ NLP VRWVG PE G E + KL F GL+
Sbjct: 301 ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGLVK 360
Query: 1226 EISFGTTRDR 1255
EISFGTT+D+
Sbjct: 361 EISFGTTKDK 370
Score = 28.9 bits (63), Expect(2) = e-171
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 1252 QMLVIKXCKNSRAVTI 1299
+MLVI+ CKNSRAVT+
Sbjct: 370 KMLVIEQCKNSRAVTV 385
>ref|XP_539390.2| PREDICTED: similar to T-complex protein 1, delta subunit
(TCP-1-delta) (CCT-delta) (A45) [Canis familiaris].
Length = 539
Score = 170 bits (431), Expect = 2e-42
Identities = 103/292 (35%), Positives = 169/292 (57%), Gaps = 1/292 (0%)
Frame = +2
Query: 185 GRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTN 364
GR +D+D+ +++ S+I AAKAVA+ ++TSLGP G+DKM+ D GDVT+TN
Sbjct: 18 GRSKTAYQDRDKPAQIRF-----SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITN 72
Query: 365 DGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIR 544
DGATIL M V H A+++VELSK+QD E GD +LL +GIHP
Sbjct: 73 DGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTI 132
Query: 545 IADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 724
I++ +++A IE L +S V++ D E L+ +A T+L SKVV+ ++ ++VNA
Sbjct: 133 ISESFQKALEKGIEILTDMSRP--VELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNA 190
Query: 725 VLTVAD-MHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAIL 901
V+ V D VD IK+ K+GG ++D +L++G+++ + ++ + + VE AKI ++
Sbjct: 191 VMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLI 249
Query: 902 TCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQ 1057
PK +++ V+ + + E+ +++QIK+TG N+ + Q
Sbjct: 250 QFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQ 301
>ref|XP_537245.2| PREDICTED: similar to chaperonin containing TCP1, subunit 3 (gamma)
isoform 1 [Canis familiaris].
Length = 544
Score = 155 bits (391), Expect = 1e-37
Identities = 88/321 (27%), Positives = 172/321 (53%), Gaps = 3/321 (0%)
Frame = +2
Query: 188 RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 367
RP L++ ++ G + +I AAK +A+ ++T LGP + KM++D G + +TND
Sbjct: 4 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 61
Query: 368 GATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRI 547
G IL + V H AK M+E+S++QD+E+GD L++ +HP +
Sbjct: 62 GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 121
Query: 548 ADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 727
Y +A I L KIS VD + + ++ +++ +K ++ IA++AV
Sbjct: 122 ISAYRKALDDMISTLKKISTP--VDTNNRDMMLNIINSSITTKAISRWSSLACNIALDAV 179
Query: 728 LTV--ADMHRRDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 898
TV + R+++D + +VE GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 180 RTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 239
Query: 899 LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDEA 1078
L E K +++ +++T ED+ + + E+E +++ I ++ I + G D A
Sbjct: 240 LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 299
Query: 1079 NHLLLQKNLPGVRWVGSPESS 1141
H L++ N+ +R V +++
Sbjct: 300 QHYLMRANITAIRRVRKTDNN 320
>ref|XP_862600.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 4
[Canis familiaris].
Length = 342
Score = 149 bits (375), Expect = 8e-36
Identities = 91/304 (29%), Positives = 164/304 (53%), Gaps = 5/304 (1%)
Frame = +2
Query: 191 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 370
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 62
Query: 371 ATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIA 550
ATIL ++DV H AK +V+++KSQD E+GD ++ G+HP I
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 551 DGYEQAARIAIEHLDKISDSVLVD--MKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 724
+ A ++A+ + +I +V + ++ + L + A T L SK+++ A++ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIVVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 725 VLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 895
V+ + ++ + ++I ++ GG LE+++L+ GV K FS+ PK+ + IA
Sbjct: 183 VIMLDEL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIA 238
Query: 896 ILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDE 1075
+L E K K+ V +VEDY+A+ E + + +I +GA + + + GD
Sbjct: 239 LLNVELELKAEKDNAKIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDV 298
Query: 1076 ANHL 1087
A L
Sbjct: 299 ATQL 302
>ref|XP_855793.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 5
[Canis familiaris].
Length = 342
Score = 148 bits (374), Expect = 1e-35
Identities = 90/304 (29%), Positives = 165/304 (54%), Gaps = 5/304 (1%)
Frame = +2
Query: 191 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 370
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 62
Query: 371 ATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIA 550
ATIL ++DV H AK +V+++KSQD E+GD ++ G+HP I
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 551 DGYEQAARIAIEHLDKISDSVLVD--MKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 724
+ A ++A+ + +I+ +V + ++ + L + A T L SK+++ A++ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 725 VLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 895
V+ + ++ + ++I ++ GG LE+++L+ GV K FS+ PK+ + IA
Sbjct: 183 VIMLDEL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIA 238
Query: 896 ILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDE 1075
+L E K ++ V +VEDY+A+ E + + +I +GA + + + GD
Sbjct: 239 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDV 298
Query: 1076 ANHL 1087
A L
Sbjct: 299 ATQL 302
>ref|XP_850875.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 2
[Canis familiaris].
Length = 543
Score = 148 bits (374), Expect = 1e-35
Identities = 90/310 (29%), Positives = 166/310 (53%), Gaps = 5/310 (1%)
Frame = +2
Query: 191 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 370
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 62
Query: 371 ATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIA 550
ATIL ++DV H AK +V+++KSQD E+GD ++ G+HP I
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 551 DGYEQAARIAIEHLDKISDSVLVD--MKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 724
+ A ++A+ + +I +V + ++ + L + A T L SK+++ A++ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIVVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 725 VLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 895
V+ + ++ + ++I ++ GG LE+++L+ GV K FS+ PK+ + IA
Sbjct: 183 VIMLDEL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIA 238
Query: 896 ILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDE 1075
+L E K K+ V +VEDY+A+ E + + +I +GA + + + GD
Sbjct: 239 LLNVELELKAEKDNAKIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDV 298
Query: 1076 ANHLLLQKNL 1105
A +++
Sbjct: 299 ATQYFADRDM 308
>ref|XP_866515.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 3
[Canis familiaris].
Length = 342
Score = 148 bits (374), Expect = 1e-35
Identities = 90/304 (29%), Positives = 165/304 (54%), Gaps = 5/304 (1%)
Frame = +2
Query: 191 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 370
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 62
Query: 371 ATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIA 550
ATIL ++DV H AK +V+++KSQD E+GD ++ G+HP I
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 551 DGYEQAARIAIEHLDKISDSVLVD--MKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 724
+ A ++A+ + +I+ +V + ++ + L + A T L SK+++ A++ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 725 VLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 895
V+ + ++ + ++I ++ GG LE+++L+ GV K FS+ PK+ + IA
Sbjct: 183 VIMLDEL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIA 238
Query: 896 ILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDE 1075
+L E K ++ V +VEDY+A+ E + + +I +GA + + + GD
Sbjct: 239 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDV 298
Query: 1076 ANHL 1087
A L
Sbjct: 299 ATQL 302
>ref|XP_848245.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 1
[Canis familiaris].
Length = 543
Score = 148 bits (373), Expect = 1e-35
Identities = 89/310 (28%), Positives = 167/310 (53%), Gaps = 5/310 (1%)
Frame = +2
Query: 191 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 370
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 62
Query: 371 ATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIA 550
ATIL ++DV H AK +V+++KSQD E+GD ++ G+HP I
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 551 DGYEQAARIAIEHLDKISDSVLVD--MKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 724
+ A ++A+ + +I+ +V + ++ + L + A T L SK+++ A++ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 725 VLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 895
V+ + ++ + ++I ++ GG LE+++L+ GV K FS+ PK+ + IA
Sbjct: 183 VIMLDEL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIA 238
Query: 896 ILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDE 1075
+L E K ++ V +VEDY+A+ E + + +I +GA + + + GD
Sbjct: 239 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDV 298
Query: 1076 ANHLLLQKNL 1105
A +++
Sbjct: 299 ATQYFADRDM 308
>ref|XP_866608.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 10
[Canis familiaris].
Length = 547
Score = 148 bits (373), Expect = 1e-35
Identities = 89/310 (28%), Positives = 167/310 (53%), Gaps = 5/310 (1%)
Frame = +2
Query: 191 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 370
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 62
Query: 371 ATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIA 550
ATIL ++DV H AK +V+++KSQD E+GD ++ G+HP I
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 551 DGYEQAARIAIEHLDKISDSVLVD--MKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 724
+ A ++A+ + +I+ +V + ++ + L + A T L SK+++ A++ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 725 VLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 895
V+ + ++ + ++I ++ GG LE+++L+ GV K FS+ PK+ + IA
Sbjct: 183 VIMLDEL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIA 238
Query: 896 ILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDE 1075
+L E K ++ V +VEDY+A+ E + + +I +GA + + + GD
Sbjct: 239 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDV 298
Query: 1076 ANHLLLQKNL 1105
A +++
Sbjct: 299 ATQYFADRDM 308
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,350,380
Number of extensions: 1296547
Number of successful extensions: 4710
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 4630
Number of HSP's successfully gapped: 47
Length of query: 433
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 327
Effective length of database: 15,340,888
Effective search space: 5016470376
Effective search space used: 5016470376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012547
(1300 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsil... 613 e-177
Alignment gi|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subun... 613 e-177
Alignment gi|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subun... 613 e-177
Alignment gi|NP_001033283.1| T-complex protein 1 subunit delta [Bos tauru... 165 7e-41
Alignment gi|NP_001017934.2| T-complex protein 1 subunit gamma [Bos tauru... 158 9e-39
Alignment gi|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus]. 149 4e-36
Alignment gi|NP_001033175.1| T-complex protein 1 subunit alpha [Bos tauru... 146 5e-35
Alignment gi|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus]. 127 3e-29
Alignment gi|NP_001029714.1| T-complex protein 1 subunit zeta [Bos taurus]. 124 2e-28
Alignment gi|NP_001029814.1| T-complex protein 1 subunit zeta-2 [Bos taur... 118 1e-26
>ref|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsilon) [Bos taurus].
Length = 541
Score = 613 bits (1580), Expect(2) = e-177
Identities = 320/370 (86%), Positives = 326/370 (88%), Gaps = 1/370 (0%)
Frame = +2
Query: 149 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 328
MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM
Sbjct: 1 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 60
Query: 329 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXX 508
MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD
Sbjct: 61 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA 120
Query: 509 XQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNS 688
QLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMK+TEPLIQTAKTTLGSKVVNS
Sbjct: 121 EQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNS 180
Query: 689 CHRQMAEIAVNAVLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 868
CHRQMAEIAVNAVLTVADM RRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
Sbjct: 181 CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 240
Query: 869 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLA 1048
KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVED+KALQKYEKEKFEEMIRQIKETGANLA
Sbjct: 241 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLA 300
Query: 1049 ICQWGFGDEANHLLLQKNLPGVRWVGSPESS*SPSHRGAHRA-AVLEAHAXKLXFPGLLX 1225
ICQWGF DEANHLLLQ +LP VRWVG PE G E A KL F GL+
Sbjct: 301 ICQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVK 360
Query: 1226 EISFGTTRDR 1255
EISFGTT+D+
Sbjct: 361 EISFGTTKDK 370
Score = 29.3 bits (64), Expect(2) = e-177
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1
Query: 1252 QMLVIKXCKNSRAVTI 1299
+MLVI+ CKNSRAVTI
Sbjct: 370 KMLVIEQCKNSRAVTI 385
>ref|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
taurus].
Length = 541
Score = 613 bits (1580), Expect(2) = e-177
Identities = 320/370 (86%), Positives = 326/370 (88%), Gaps = 1/370 (0%)
Frame = +2
Query: 149 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 328
MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM
Sbjct: 1 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 60
Query: 329 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXX 508
MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD
Sbjct: 61 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA 120
Query: 509 XQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNS 688
QLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMK+TEPLIQTAKTTLGSKVVNS
Sbjct: 121 EQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNS 180
Query: 689 CHRQMAEIAVNAVLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 868
CHRQMAEIAVNAVLTVADM RRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
Sbjct: 181 CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 240
Query: 869 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLA 1048
KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVED+KALQKYEKEKFEEMIRQIKETGANLA
Sbjct: 241 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLA 300
Query: 1049 ICQWGFGDEANHLLLQKNLPGVRWVGSPESS*SPSHRGAHRA-AVLEAHAXKLXFPGLLX 1225
ICQWGF DEANHLLLQ +LP VRWVG PE G E A KL F GL+
Sbjct: 301 ICQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVK 360
Query: 1226 EISFGTTRDR 1255
EISFGTT+D+
Sbjct: 361 EISFGTTKDK 370
Score = 29.3 bits (64), Expect(2) = e-177
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1
Query: 1252 QMLVIKXCKNSRAVTI 1299
+MLVI+ CKNSRAVTI
Sbjct: 370 KMLVIEQCKNSRAVTI 385
>ref|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
taurus].
Length = 541
Score = 613 bits (1580), Expect(2) = e-177
Identities = 320/370 (86%), Positives = 326/370 (88%), Gaps = 1/370 (0%)
Frame = +2
Query: 149 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 328
MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM
Sbjct: 1 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 60
Query: 329 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXX 508
MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD
Sbjct: 61 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA 120
Query: 509 XQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNS 688
QLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMK+TEPLIQTAKTTLGSKVVNS
Sbjct: 121 EQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNS 180
Query: 689 CHRQMAEIAVNAVLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 868
CHRQMAEIAVNAVLTVADM RRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
Sbjct: 181 CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 240
Query: 869 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLA 1048
KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVED+KALQKYEKEKFEEMIRQIKETGANLA
Sbjct: 241 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLA 300
Query: 1049 ICQWGFGDEANHLLLQKNLPGVRWVGSPESS*SPSHRGAHRA-AVLEAHAXKLXFPGLLX 1225
ICQWGF DEANHLLLQ +LP VRWVG PE G E A KL F GL+
Sbjct: 301 ICQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVK 360
Query: 1226 EISFGTTRDR 1255
EISFGTT+D+
Sbjct: 361 EISFGTTKDK 370
Score = 29.3 bits (64), Expect(2) = e-177
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1
Query: 1252 QMLVIKXCKNSRAVTI 1299
+MLVI+ CKNSRAVTI
Sbjct: 370 KMLVIEQCKNSRAVTI 385
>ref|NP_001033283.1| T-complex protein 1 subunit delta [Bos taurus].
Length = 542
Score = 165 bits (418), Expect = 7e-41
Identities = 101/292 (34%), Positives = 168/292 (57%), Gaps = 1/292 (0%)
Frame = +2
Query: 185 GRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTN 364
GR +D+D+ +++ S+I AAKAVA+ ++TSLGP G+DKM+ D GDVT+TN
Sbjct: 21 GRGKSAYQDRDKPAQIRF-----SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITN 75
Query: 365 DGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIR 544
DGATIL M V H A+++VELSK+QD E GD +LL +GIHP
Sbjct: 76 DGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTI 135
Query: 545 IADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 724
I++ +++A IE L +S ++ D E L+ +A T+L SKVV+ ++ ++V+A
Sbjct: 136 ISESFQKALEKGIEILTDMSRP--EELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDA 193
Query: 725 VLTVAD-MHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAIL 901
V+ V D VD IK+ K+GG ++D +L++G+++ + ++ + + VE AKI ++
Sbjct: 194 VMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLI 252
Query: 902 TCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQ 1057
PK +++ V+ + + E+ +++QIK+TG N+ + Q
Sbjct: 253 QFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQ 304
>ref|NP_001017934.2| T-complex protein 1 subunit gamma [Bos taurus].
Length = 545
Score = 158 bits (400), Expect = 9e-39
Identities = 89/321 (27%), Positives = 175/321 (54%), Gaps = 3/321 (0%)
Frame = +2
Query: 188 RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 367
RP L++ ++ G + +I AAK +A+ ++T LGP + KM++D G + +TND
Sbjct: 5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 62
Query: 368 GATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRI 547
G IL + V H AK M+E+S++QD+E+GD L++ +HP +
Sbjct: 63 GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 122
Query: 548 ADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 727
Y +A I L KI S+ VD + + ++ +++ +KV++ IA++AV
Sbjct: 123 ISAYRKALDDMISTLKKI--SIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAV 180
Query: 728 LTV--ADMHRRDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 898
TV + R+++D + +VE GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 181 KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240
Query: 899 LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDEA 1078
L E K +++ +++T ED+ + + E+E +++ I + ++ I + G D A
Sbjct: 241 LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLA 300
Query: 1079 NHLLLQKNLPGVRWVGSPESS 1141
H L++ N+ +R V +++
Sbjct: 301 QHYLMRANITAIRRVRKTDNN 321
>ref|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus].
Length = 543
Score = 149 bits (377), Expect = 4e-36
Identities = 90/310 (29%), Positives = 167/310 (53%), Gaps = 5/310 (1%)
Frame = +2
Query: 191 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 370
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 62
Query: 371 ATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIA 550
ATIL ++DV H AK +V+++KSQD E+GD ++ G+HP I
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 551 DGYEQAARIAIEHLDKISDSVLVD--MKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 724
+ A ++A+ + +I+ +V + ++ + L + A T L SK+++ A++ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 725 VLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 895
V+ + D+ + ++I ++ GG LE+++L+ GV K FS+ PK+ + IA
Sbjct: 183 VMMLDDL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIA 238
Query: 896 ILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDE 1075
+L E K ++ V +VEDY+A+ E + + +I +GA + + + GD
Sbjct: 239 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDV 298
Query: 1076 ANHLLLQKNL 1105
A +++
Sbjct: 299 ATQYFADRDM 308
>ref|NP_001033175.1| T-complex protein 1 subunit alpha [Bos taurus].
Length = 556
Score = 146 bits (368), Expect = 5e-35
Identities = 99/300 (33%), Positives = 158/300 (52%), Gaps = 6/300 (2%)
Frame = +2
Query: 242 EALKS-HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 418
EA++S ++MAA ++AN +K+SLGP GLDKM+VD GDVT+TNDGATIL +++V+H AK+
Sbjct: 15 EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 74
Query: 419 MVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDK 598
+ EL+ QD E+GD +L+ + IHP + GY A + A+ +
Sbjct: 75 LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRY--- 131
Query: 599 ISDSVLV--DMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMHRRD---VD 763
IS+++++ D + LI AKT++ SKV+ A + V+AVL + R
Sbjct: 132 ISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYP 191
Query: 764 FELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHK 943
I V G ++ LI G ++ MPK++ +AKIA L + K K +
Sbjct: 192 VNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQ 251
Query: 944 LDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDEANHLLLQKNLPGVRWV 1123
+ +T E +++ E + +E I++I TGAN+ + G D ++ VR V
Sbjct: 252 VVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRV 311
>ref|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus].
Length = 535
Score = 127 bits (318), Expect = 3e-29
Identities = 88/270 (32%), Positives = 143/270 (52%), Gaps = 4/270 (1%)
Frame = +2
Query: 254 SHIMAAKAVANTMKTSLGPNGLDKMMVD--KDGDVTVTNDGATILSMMDVDHQIAKLMVE 427
S + A A+ + +K++LGP G+DK+++ +D + VTNDGATIL + VD+ AK++V+
Sbjct: 27 SSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVD 86
Query: 428 LSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEH-LDKIS 604
+S+ QDDE+GD L+ + IHP I G+ +A + A + L+
Sbjct: 87 MSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAV 146
Query: 605 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMHRRDVDFELIKVE 784
D ++K + L+ A TTL SK++ ++AV AVL + + + E I V
Sbjct: 147 DHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVI 202
Query: 785 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT-KHKLDVTSV 961
K+GG L D+ L +G ++DK Q PK++E+AKI I + K K ++ V S
Sbjct: 203 KKLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDST 261
Query: 962 EDYKALQKYEKEKFEEMIRQIKETGANLAI 1051
++ EKEK +E + +I + G N I
Sbjct: 262 AKVAEIEHAEKEKMKEKVERILKHGINCFI 291
>ref|NP_001029714.1| T-complex protein 1 subunit zeta [Bos taurus].
Length = 531
Score = 124 bits (311), Expect = 2e-28
Identities = 81/265 (30%), Positives = 138/265 (52%), Gaps = 3/265 (1%)
Frame = +2
Query: 245 ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMV 424
AL +I AA+ + + ++T+LGP G KM+V GD+ +T DG +L M + H A L+
Sbjct: 19 ALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIA 78
Query: 425 ELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKIS 604
+++ +QDD GD + G+HP I +G+E A A++ L+++
Sbjct: 79 KVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVK 138
Query: 605 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVL-TVADMHRRDVDFELIKV 781
S D E LI A+T+L +KV H ++A++ AV+ ++ + ++D +L V
Sbjct: 139 VS---KEMDRETLIDVARTSLRTKV----HAELADVLTEAVVDSILAIKKQDEPIDLFMV 191
Query: 782 E-GKVGGRLE-DTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVT 955
E ++ + E DT LI+G+++D HP M K+VEDA I E K +
Sbjct: 192 EIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYK 251
Query: 956 SVEDYKALQKYEKEKFEEMIRQIKE 1030
S E+ + L K E++ E+ +++I E
Sbjct: 252 SAEEREKLVKAERKFIEDRVKKIIE 276
>ref|NP_001029814.1| T-complex protein 1 subunit zeta-2 [Bos taurus].
Length = 531
Score = 118 bits (296), Expect = 1e-26
Identities = 80/263 (30%), Positives = 134/263 (50%), Gaps = 3/263 (1%)
Frame = +2
Query: 245 ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMV 424
AL +I AA+ + + ++T+LGP G KM+V GDV +T DG +L M + H A L+
Sbjct: 19 ALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDVKLTKDGNVLLHEMQIQHPTASLIA 78
Query: 425 ELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKIS 604
+++ +QDD GD + G+HP IA+G+E A A+E L+++
Sbjct: 79 KVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEIAKIKALEVLEQV- 137
Query: 605 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMHRR---DVDFELI 775
+ +MK E + A+T+L +KV H Q+A++ AV+ RR +D ++
Sbjct: 138 -KIKKEMK-REIHLDVARTSLQTKV----HPQLADVLTEAVVDSVLAIRRPNYPIDLFMV 191
Query: 776 KVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVT 955
++ DTKLIKG+++D HP M K+V+DA I E K +
Sbjct: 192 EIMEMKHKSETDTKLIKGLVLDHGARHPDMKKRVDDAFILTCNVSLEYEKTEVSSGFFYK 251
Query: 956 SVEDYKALQKYEKEKFEEMIRQI 1024
+ E+ + L K E++ E+ +++I
Sbjct: 252 TAEEKEKLVKAERKFIEDRVQKI 274
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,014,345
Number of extensions: 1249116
Number of successful extensions: 4461
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4424
Number of HSP's successfully gapped: 18
Length of query: 433
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,207,134
Effective search space: 4659939952
Effective search space used: 4659939952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012547
(1300 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsil... 498 e-143
Alignment gi|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta... 168 5e-42
Alignment gi|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma... 156 2e-38
Alignment gi|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa]. 149 3e-36
Alignment gi|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrof... 145 4e-35
Alignment gi|XP_003355175.1| PREDICTED: t-complex protein 1 subunit gamma... 134 1e-31
Alignment gi|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa]. 127 2e-29
Alignment gi|XP_003124509.2| PREDICTED: t-complex protein 1 subunit zeta-... 124 2e-28
Alignment gi|XP_003358949.1| PREDICTED: t-complex protein 1 subunit theta... 116 3e-26
Alignment gi|XP_003358948.1| PREDICTED: t-complex protein 1 subunit theta... 116 3e-26
>ref|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsilon, partial [Sus scrofa].
Length = 487
Score = 498 bits (1282), Expect(2) = e-143
Identities = 266/335 (79%), Positives = 269/335 (80%), Gaps = 1/335 (0%)
Frame = +2
Query: 254 SHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELS 433
SHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELS
Sbjct: 1 SHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELS 60
Query: 434 KSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSV 613
KSQDDEIGD QLLDRGIHPIRIADGYEQAARIAIEHLD
Sbjct: 61 KSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDXX---- 116
Query: 614 LVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMHRRDVDFELIKVEGKV 793
TTLGSKVVNSCHRQMAEIAVNAVLTVADM RRDVDFELIKVEGKV
Sbjct: 117 ---------------TTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKV 161
Query: 794 GGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYK 973
GGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYK
Sbjct: 162 GGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYK 221
Query: 974 ALQKYEKEKFEEMIRQIKETGANLAICQWGFGDEANHLLLQKNLPGVRWVGSPESS*SPS 1153
ALQKYEKEKFEEMIRQIKETGANLAICQWGF DEANHLLLQ NLP VRWVG PE
Sbjct: 222 ALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAI 281
Query: 1154 HRGAHRA-AVLEAHAXKLXFPGLLXEISFGTTRDR 1255
G E KL F GL+ EISFGTT+D+
Sbjct: 282 ATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDK 316
Score = 29.3 bits (64), Expect(2) = e-143
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1
Query: 1252 QMLVIKXCKNSRAVTI 1299
+MLVI+ CKNSRAVTI
Sbjct: 316 KMLVIEQCKNSRAVTI 331
>ref|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta-like [Sus scrofa].
Length = 539
Score = 168 bits (426), Expect = 5e-42
Identities = 102/292 (34%), Positives = 169/292 (57%), Gaps = 1/292 (0%)
Frame = +2
Query: 185 GRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTN 364
GR +D+D+ +++ S+I AAKAVA+ ++TSLGP G+DKM+ D GDVT+TN
Sbjct: 18 GRGKSAYQDRDKPAQIRF-----SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITN 72
Query: 365 DGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIR 544
DGATIL M V H A+++VELSK+QD E GD +LL +GIHP
Sbjct: 73 DGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTI 132
Query: 545 IADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 724
I++ +++A IE L +S V++ D + L+ +A T+L SKVV+ ++ ++VNA
Sbjct: 133 ISESFQKALEKGIEILTDMSRP--VELSDRDTLLNSATTSLNSKVVSQYSSLLSPMSVNA 190
Query: 725 VLTVAD-MHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAIL 901
V+ V D VD IK+ K+GG ++D +L++G+++ + ++ + + VE AKI ++
Sbjct: 191 VMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLI 249
Query: 902 TCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQ 1057
PK +++ V+ + + E+ +++QIK+TG N+ + Q
Sbjct: 250 QFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQ 301
>ref|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma isoform 2 [Sus scrofa].
Length = 545
Score = 156 bits (395), Expect = 2e-38
Identities = 89/321 (27%), Positives = 173/321 (53%), Gaps = 3/321 (0%)
Frame = +2
Query: 188 RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 367
RP L++ ++ G + +I AAK +A+ ++T LGP + KM++D G + +TND
Sbjct: 5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 62
Query: 368 GATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRI 547
G IL + V H AK M+E+S++QD+E+GD L++ +HP +
Sbjct: 63 GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 122
Query: 548 ADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 727
Y +A I L KIS VD + + ++ +++ +KV++ IA++AV
Sbjct: 123 ISAYRKALDDMISTLKKISTP--VDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 180
Query: 728 LTV--ADMHRRDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 898
TV + R+++D + +VE GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 181 KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240
Query: 899 LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDEA 1078
L E K +++ +++T ED+ + + E+E +++ I ++ I + G D A
Sbjct: 241 LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 300
Query: 1079 NHLLLQKNLPGVRWVGSPESS 1141
H L++ N+ +R V +++
Sbjct: 301 QHYLMRANITAIRRVRKTDNN 321
>ref|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa].
Length = 543
Score = 149 bits (376), Expect = 3e-36
Identities = 90/310 (29%), Positives = 167/310 (53%), Gaps = 5/310 (1%)
Frame = +2
Query: 191 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 370
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 62
Query: 371 ATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIA 550
ATIL ++DV H AK +V+++KSQD E+GD ++ G+HP I
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 551 DGYEQAARIAIEHLDKISDSVLVD--MKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 724
+ A ++A+ + +I+ +V + ++ + L + A T L SK+++ A++ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 725 VLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 895
V+ + D+ + ++I ++ GG LE+++L+ GV K FS+ PK+ + IA
Sbjct: 183 VMMLDDL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIA 238
Query: 896 ILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDE 1075
+L E K ++ V +VEDY+A+ E + + +I +GA + + + GD
Sbjct: 239 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDV 298
Query: 1076 ANHLLLQKNL 1105
A +++
Sbjct: 299 ATQYFADRDM 308
>ref|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrofa].
Length = 556
Score = 145 bits (367), Expect = 4e-35
Identities = 97/303 (32%), Positives = 160/303 (52%), Gaps = 9/303 (2%)
Frame = +2
Query: 242 EALKS-HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 418
EA++S ++MAA ++AN +K+SLGP GLDKM+VD GDVT+TNDGATIL +++V+H AK+
Sbjct: 15 EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 74
Query: 419 MVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDK 598
+ EL+ QD E+GD +L+ + IHP + GY A + A+ +
Sbjct: 75 LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRY--- 131
Query: 599 ISDSVLV--DMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMHRRDV---- 760
IS+++++ D + LI AKT++ SK++ A + V+AVL + R
Sbjct: 132 ISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYP 191
Query: 761 --DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 934
++K G+ ++ LI G ++ MPK++ +AKIA L + K K
Sbjct: 192 VNSINILKAHGR---SQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 248
Query: 935 KHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDEANHLLLQKNLPGV 1114
++ +T E +++ E + +E I++I TGAN+ + G D ++ V
Sbjct: 249 GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAV 308
Query: 1115 RWV 1123
R V
Sbjct: 309 RRV 311
>ref|XP_003355175.1| PREDICTED: t-complex protein 1 subunit gamma isoform 3 [Sus scrofa].
Length = 500
Score = 134 bits (337), Expect = 1e-31
Identities = 76/276 (27%), Positives = 149/276 (53%), Gaps = 3/276 (1%)
Frame = +2
Query: 323 KMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXX 502
KM++D G + +TNDG IL + V H AK M+E+S++QD+E+GD
Sbjct: 3 KMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLS 62
Query: 503 XXXQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVV 682
L++ +HP + Y +A I L KIS V D + + ++ +++ +KV+
Sbjct: 63 VAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPV--DTNNRDMMLNIINSSITTKVI 120
Query: 683 NSCHRQMAEIAVNAVLTVA--DMHRRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDFS 853
+ IA++AV TV + R+++D + +VE GG +ED+ +++GV+++KD +
Sbjct: 121 SRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVT 180
Query: 854 HPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKET 1033
HP+M + +++ +I +L E K +++ +++T ED+ + + E+E +++ I
Sbjct: 181 HPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHL 240
Query: 1034 GANLAICQWGFGDEANHLLLQKNLPGVRWVGSPESS 1141
++ I + G D A H L++ N+ +R V +++
Sbjct: 241 KPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNN 276
>ref|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa].
Length = 535
Score = 127 bits (318), Expect = 2e-29
Identities = 88/270 (32%), Positives = 143/270 (52%), Gaps = 4/270 (1%)
Frame = +2
Query: 254 SHIMAAKAVANTMKTSLGPNGLDKMMVD--KDGDVTVTNDGATILSMMDVDHQIAKLMVE 427
S + A A+ + +K++LGP G+DK+++ +D + VTNDGATIL + VD+ AK++V+
Sbjct: 27 SSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVD 86
Query: 428 LSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEH-LDKIS 604
+S+ QDDE+GD L+ + IHP I G+ +A + A + L+
Sbjct: 87 MSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAV 146
Query: 605 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMHRRDVDFELIKVE 784
D ++K + L+ A TTL SK++ ++AV AVL + + + E I V
Sbjct: 147 DHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVI 202
Query: 785 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT-KHKLDVTSV 961
K+GG L D+ L +G ++DK Q PK++E+AKI I + K K ++ V S
Sbjct: 203 KKLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDST 261
Query: 962 EDYKALQKYEKEKFEEMIRQIKETGANLAI 1051
++ EKEK +E + +I + G N I
Sbjct: 262 AKVAEIEHAEKEKMKEKVERILKHGINCFI 291
>ref|XP_003124509.2| PREDICTED: t-complex protein 1 subunit zeta-like isoform 1 [Sus
scrofa].
Length = 531
Score = 124 bits (310), Expect = 2e-28
Identities = 81/265 (30%), Positives = 138/265 (52%), Gaps = 3/265 (1%)
Frame = +2
Query: 245 ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMV 424
AL +I AA+ + + ++T+LGP G KM+V GD+ +T DG +L M + H A L+
Sbjct: 19 ALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIA 78
Query: 425 ELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKIS 604
+++ +QDD GD + G+HP I +G+E A A++ L+++
Sbjct: 79 KVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVK 138
Query: 605 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVL-TVADMHRRDVDFELIKV 781
S D E LI A+T+L +KV H ++A++ AV+ +V + ++D +L V
Sbjct: 139 VS---KEMDRETLIDVARTSLRTKV----HAELADVLTEAVVDSVLAIKKQDEPIDLFMV 191
Query: 782 E-GKVGGRLE-DTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVT 955
E ++ + E DT LI+G+++D HP M K+VEDA I E K +
Sbjct: 192 EIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYK 251
Query: 956 SVEDYKALQKYEKEKFEEMIRQIKE 1030
S E+ + L + E++ E+ +++I E
Sbjct: 252 SAEEREKLVRAERKFIEDRVKKIVE 276
>ref|XP_003358949.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 3 [Sus
scrofa].
Length = 529
Score = 116 bits (290), Expect = 3e-26
Identities = 84/292 (28%), Positives = 141/292 (48%)
Frame = +2
Query: 242 EALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 421
EA+ +I A K +A T +T+ GPNG++KM+++ + VTND ATIL ++V H AK++
Sbjct: 8 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 67
Query: 422 VELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKI 601
V S Q+ E+GD +LL G+ + +GYE A R A E L +
Sbjct: 68 VMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPDL 127
Query: 602 SDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMHRRDVDFELIKV 781
+++D + + T++ SK + IA V D +VD I+V
Sbjct: 128 VCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVD--NIRV 185
Query: 782 EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSV 961
+G + + ++ G++ K+ V+DAKIA+ +CPF+ +TK + + +
Sbjct: 186 CKILGSGVHSSSVLHGMVFKKETEGD--VTSVKDAKIAVYSCPFDGMITETKGTVLIKTA 243
Query: 962 EDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDEANHLLLQKNLPGVR 1117
E+ K E+ E ++ I +TGAN+ + D A H + N+ VR
Sbjct: 244 EELMNFSKGEENLMEAQVKAIADTGANVVVTGGKVADMALHYANKYNIMLVR 295
>ref|XP_003358948.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 2 [Sus
scrofa].
Length = 557
Score = 116 bits (290), Expect = 3e-26
Identities = 84/292 (28%), Positives = 141/292 (48%)
Frame = +2
Query: 242 EALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 421
EA+ +I A K +A T +T+ GPNG++KM+++ + VTND ATIL ++V H AK++
Sbjct: 36 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 95
Query: 422 VELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKI 601
V S Q+ E+GD +LL G+ + +GYE A R A E L +
Sbjct: 96 VMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPDL 155
Query: 602 SDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMHRRDVDFELIKV 781
+++D + + T++ SK + IA V D +VD I+V
Sbjct: 156 VCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVD--NIRV 213
Query: 782 EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSV 961
+G + + ++ G++ K+ V+DAKIA+ +CPF+ +TK + + +
Sbjct: 214 CKILGSGVHSSSVLHGMVFKKETEGD--VTSVKDAKIAVYSCPFDGMITETKGTVLIKTA 271
Query: 962 EDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDEANHLLLQKNLPGVR 1117
E+ K E+ E ++ I +TGAN+ + D A H + N+ VR
Sbjct: 272 EELMNFSKGEENLMEAQVKAIADTGANVVVTGGKVADMALHYANKYNIMLVR 323
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,653,864
Number of extensions: 804254
Number of successful extensions: 2748
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 2718
Number of HSP's successfully gapped: 16
Length of query: 433
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 331
Effective length of database: 8,804,438
Effective search space: 2914268978
Effective search space used: 2914268978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012547
(1300 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031663.1| T-complex protein 1 subunit epsilon [Mus muscul... 593 e-170
Alignment gi|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus]. 168 1e-41
Alignment gi|NP_001229994.1| T-complex protein 1 subunit gamma [Mus muscu... 157 1e-38
Alignment gi|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus]. 157 1e-38
Alignment gi|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus]. 150 3e-36
Alignment gi|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus]. 143 3e-34
Alignment gi|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus]. 125 7e-29
Alignment gi|NP_033968.1| T-complex protein 1 subunit zeta [Mus musculus]. 123 4e-28
Alignment gi|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculu... 116 3e-26
Alignment gi|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus]. 115 8e-26
>ref|NP_031663.1| T-complex protein 1 subunit epsilon [Mus musculus].
Length = 541
Score = 593 bits (1530), Expect = e-170
Identities = 307/370 (82%), Positives = 320/370 (86%), Gaps = 1/370 (0%)
Frame = +2
Query: 149 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 328
MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTM+TSLGPNGLDKM
Sbjct: 1 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKM 60
Query: 329 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXX 508
MVDKDGDVT+TNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD
Sbjct: 61 MVDKDGDVTITNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA 120
Query: 509 XQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNS 688
QLLDRGIHPIRIADGYEQAARIAI+HLDKISD VLVD+ + EPLIQTAKTTLGSKV+NS
Sbjct: 121 EQLLDRGIHPIRIADGYEQAARIAIQHLDKISDKVLVDINNPEPLIQTAKTTLGSKVINS 180
Query: 689 CHRQMAEIAVNAVLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 868
CHRQMAEIAVNAVLTVADM RRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
Sbjct: 181 CHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 240
Query: 869 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLA 1048
K+V DAKIAILTCPFEPPKPKTKHKLDV SVEDYKALQKYEKEKFEEMI+QIKETGANLA
Sbjct: 241 KKVVDAKIAILTCPFEPPKPKTKHKLDVMSVEDYKALQKYEKEKFEEMIKQIKETGANLA 300
Query: 1049 ICQWGFGDEANHLLLQKNLPGVRWVGSPESS*SPSHRGAHRA-AVLEAHAXKLXFPGLLX 1225
ICQWGF DEANHLLLQ LP VRWVG PE G E + KL F G++
Sbjct: 301 ICQWGFDDEANHLLLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVVQ 360
Query: 1226 EISFGTTRDR 1255
EISFGTT+D+
Sbjct: 361 EISFGTTKDK 370
>ref|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus].
Length = 539
Score = 168 bits (425), Expect = 1e-41
Identities = 98/269 (36%), Positives = 158/269 (58%), Gaps = 1/269 (0%)
Frame = +2
Query: 254 SHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELS 433
S+I AAKAVA+ ++TSLGP G+DKM+ D GDVT+TNDGATIL M V H A+++VELS
Sbjct: 36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELS 95
Query: 434 KSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSV 613
K+QD E GD +LL +GIHP I++ +++A +E L +S
Sbjct: 96 KAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRP- 154
Query: 614 LVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVAD-MHRRDVDFELIKVEGK 790
V + D E L+ +A T+L SKVV+ ++ ++VNAV+ V D VD IK+ K
Sbjct: 155 -VQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKK 213
Query: 791 VGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDY 970
+GG ++D +L++G+++ + ++ + + VE AKI ++ PK +++ V+
Sbjct: 214 LGGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQM 272
Query: 971 KALQKYEKEKFEEMIRQIKETGANLAICQ 1057
+ + E+ +++QIK+TG N+ + Q
Sbjct: 273 DRVLREERAYILNLVKQIKKTGCNVLLIQ 301
>ref|NP_001229994.1| T-complex protein 1 subunit gamma [Mus musculus].
Length = 545
Score = 157 bits (398), Expect = 1e-38
Identities = 90/321 (28%), Positives = 173/321 (53%), Gaps = 3/321 (0%)
Frame = +2
Query: 188 RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 367
RP L++ ++ G + +I AAK +A+ ++T LGP + KM++D G + +TND
Sbjct: 5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 62
Query: 368 GATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRI 547
G IL + V H AK M+E+S++QD+E+GD L++ +HP +
Sbjct: 63 GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 122
Query: 548 ADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 727
Y A I L KIS VD+ + E ++ +++ +KV++ IA++AV
Sbjct: 123 ISAYRMALDDMISTLKKISTP--VDVNNREMMLSIINSSITTKVISRWSSLACNIALDAV 180
Query: 728 LTV--ADMHRRDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 898
TV + R+++D + +VE GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 181 KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240
Query: 899 LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDEA 1078
L E K +++ +++T ED+ + + E+E ++ I + ++ I + G D A
Sbjct: 241 LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLA 300
Query: 1079 NHLLLQKNLPGVRWVGSPESS 1141
H L++ N+ +R V +++
Sbjct: 301 QHYLMRANVTAIRRVRKTDNN 321
>ref|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus].
Length = 545
Score = 157 bits (398), Expect = 1e-38
Identities = 90/321 (28%), Positives = 173/321 (53%), Gaps = 3/321 (0%)
Frame = +2
Query: 188 RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 367
RP L++ ++ G + +I AAK +A+ ++T LGP + KM++D G + +TND
Sbjct: 5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 62
Query: 368 GATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRI 547
G IL + V H AK M+E+S++QD+E+GD L++ +HP +
Sbjct: 63 GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 122
Query: 548 ADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 727
Y A I L KIS VD+ + E ++ +++ +KV++ IA++AV
Sbjct: 123 ISAYRMALDDMISTLKKISTP--VDVNNREMMLSIINSSITTKVISRWSSLACNIALDAV 180
Query: 728 LTV--ADMHRRDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 898
TV + R+++D + +VE GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 181 KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240
Query: 899 LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDEA 1078
L E K +++ +++T ED+ + + E+E ++ I + ++ I + G D A
Sbjct: 241 LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLA 300
Query: 1079 NHLLLQKNLPGVRWVGSPESS 1141
H L++ N+ +R V +++
Sbjct: 301 QHYLMRANVTAIRRVRKTDNN 321
>ref|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus].
Length = 544
Score = 150 bits (378), Expect = 3e-36
Identities = 90/310 (29%), Positives = 169/310 (54%), Gaps = 5/310 (1%)
Frame = +2
Query: 191 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 370
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 62
Query: 371 ATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIA 550
ATIL ++DV H AK +V+++KSQD E+GD ++ G+HP I
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 551 DGYEQAARIAIEHLDKISDSVLVD--MKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 724
+ A ++A+ + +I+ +V ++ + L + A T L SK+++ A++ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDA 182
Query: 725 VLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 895
V+ + ++ + ++I ++ GG LE+++L+ GV K FS+ PK+ ++ KIA
Sbjct: 183 VMMLDEL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIA 238
Query: 896 ILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDE 1075
+L E K ++ V +VEDY+A+ E + + +I ++GA + + + GD
Sbjct: 239 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHQSGAKVILSKLPIGDV 298
Query: 1076 ANHLLLQKNL 1105
A +++
Sbjct: 299 ATQYFADRDM 308
>ref|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus].
Length = 556
Score = 143 bits (360), Expect = 3e-34
Identities = 93/284 (32%), Positives = 154/284 (54%), Gaps = 7/284 (2%)
Frame = +2
Query: 242 EALKS-HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 418
EA++S ++MAA ++AN +K+S GP GLDKM+VD GDVT+TNDGATIL +++V+H AK+
Sbjct: 15 EAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 74
Query: 419 MVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDK 598
+ EL+ QD E+GD +L+ + IHP + GY A + A+ ++++
Sbjct: 75 LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINE 134
Query: 599 ISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMHRRDV------ 760
+ + D + LI AKT++ SK++ A + V+AVL V R
Sbjct: 135 -NLIINTDELGRDCLINAAKTSMSSKIIGINGDYFANMVVDAVLAVKYTDARGQPRYPVN 193
Query: 761 DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKH 940
++K G+ ++E + LI G ++ MPK++ +AKIA L + K K
Sbjct: 194 SVNILKAHGR--SQIE-SMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGV 250
Query: 941 KLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGD 1072
++ +T E +++ E + +E I++I TGAN+ + G D
Sbjct: 251 QVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDD 294
>ref|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus].
Length = 535
Score = 125 bits (314), Expect = 7e-29
Identities = 88/270 (32%), Positives = 141/270 (52%), Gaps = 4/270 (1%)
Frame = +2
Query: 254 SHIMAAKAVANTMKTSLGPNGLDKMMVD--KDGDVTVTNDGATILSMMDVDHQIAKLMVE 427
S + A A+ + +K++LGP G+DK+++ +D + VTNDGATIL + VD+ AK++V+
Sbjct: 27 SSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAALMVTNDGATILKNIGVDNPAAKVLVD 86
Query: 428 LSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEH-LDKIS 604
+S+ QDDE+GD L+ + IHP I G+ +A + A E L
Sbjct: 87 MSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIISGWREATKAAREALLSSAV 146
Query: 605 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMHRRDVDFELIKVE 784
D + + + L+ A TTL SK++ ++AV AVL + + + E I V
Sbjct: 147 DHGSDEARFWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVI 202
Query: 785 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT-KHKLDVTSV 961
K+GG L D+ L +G ++DK Q PK++E+AKI I + K K ++ V S
Sbjct: 203 KKLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDST 261
Query: 962 EDYKALQKYEKEKFEEMIRQIKETGANLAI 1051
++ EKEK +E + +I + G N I
Sbjct: 262 AKVAEIEHAEKEKMKEKVERILKHGINCFI 291
>ref|NP_033968.1| T-complex protein 1 subunit zeta [Mus musculus].
Length = 531
Score = 123 bits (308), Expect = 4e-28
Identities = 80/265 (30%), Positives = 138/265 (52%), Gaps = 3/265 (1%)
Frame = +2
Query: 245 ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMV 424
AL +I AA+ + + ++T+LGP G KM+V GD+ +T DG +L M + H A L+
Sbjct: 19 ALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIA 78
Query: 425 ELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKIS 604
+++ +QDD GD + G+HP I +G+E A A++ L+++
Sbjct: 79 KVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVK 138
Query: 605 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVL-TVADMHRRDVDFELIKV 781
S D E LI A+T+L +KV H ++A++ AV+ ++ + ++D +L V
Sbjct: 139 VS---KEMDRETLIDVARTSLRTKV----HAELADVLTEAVVDSILAIRKKDEPIDLFMV 191
Query: 782 E-GKVGGRLE-DTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVT 955
E ++ + E DT LI+G+++D HP M K+VE+A I E K +
Sbjct: 192 EIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVENAYILTCNVSLEYEKTEVNSGFFYK 251
Query: 956 SVEDYKALQKYEKEKFEEMIRQIKE 1030
S E+ + L K E++ E+ +++I E
Sbjct: 252 SAEEREKLVKAERKFIEDRVKKIIE 276
>ref|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculus].
Length = 531
Score = 116 bits (291), Expect = 3e-26
Identities = 82/263 (31%), Positives = 138/263 (52%), Gaps = 3/263 (1%)
Frame = +2
Query: 245 ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMV 424
AL +I AA+ + + ++ +LGP G KM+V GD+ +T DG +L M + H A ++
Sbjct: 19 ALAVNICAARGLQDVLRPTLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASIIA 78
Query: 425 ELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKIS 604
+++ +QD GD + G+HP I +G++ A A+E LD+I
Sbjct: 79 KVAAAQDHVTGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFDVAKTKALEVLDEI- 137
Query: 605 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVL-TVADMHRRDVDFELIKV 781
V +MK E L+ A+T+L +KV H ++A+I AV+ +V + R V +L V
Sbjct: 138 -KVQKEMK-REILLDVARTSLQTKV----HAELADILTEAVVDSVLAIRRPGVPIDLFMV 191
Query: 782 E-GKVGGRLE-DTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVT 955
E ++ + E DT+LI+G+++D HP+M KQV DA I E K +
Sbjct: 192 EIVEMRHKSETDTQLIRGLVLDHGARHPRMRKQVRDAYILTCNVSLEYEKTEVSSGFFYK 251
Query: 956 SVEDYKALQKYEKEKFEEMIRQI 1024
+VE+ + L K E++ E+ +++I
Sbjct: 252 TVEEKEKLVKAERKFIEDRVQKI 274
>ref|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus].
Length = 548
Score = 115 bits (288), Expect = 8e-26
Identities = 86/303 (28%), Positives = 146/303 (48%), Gaps = 1/303 (0%)
Frame = +2
Query: 212 QDRKSRLMGLE-ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSM 388
+D GLE A+ +I A K +A T +T+ GPNG++KM++++ + VTND ATIL
Sbjct: 16 KDGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINRLEKLFVTNDAATILRE 75
Query: 389 MDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQA 568
++V H AK++V S Q+ E+GD +LL G+ + GYE A
Sbjct: 76 LEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVISGYEIA 135
Query: 569 ARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMH 748
+ A E L ++ +++D + + +T++ SK S IA V D
Sbjct: 136 CKKAHEILPELVCCSAKNLRDVDEVSSLLRTSIMSKQYGSETFLAKLIAQACVSIFPDSG 195
Query: 749 RRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKP 928
+VD I+V +G + + ++ G++ K+ V+DAKIA+ +CPF+
Sbjct: 196 NFNVD--NIRVCKILGSGIYSSSVLHGMVFKKETEGD--VTSVKDAKIAVYSCPFDGMIT 251
Query: 929 KTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDEANHLLLQKNLP 1108
+TK + + + E+ K E+ + ++ I TGAN+ + D A H + N+
Sbjct: 252 ETKGTVLIKTAEELMNFSKGEENLMDAQVKAIAGTGANVIVTGGKVADIALHYANKYNIM 311
Query: 1109 GVR 1117
VR
Sbjct: 312 LVR 314
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,903,611
Number of extensions: 1051274
Number of successful extensions: 3648
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3606
Number of HSP's successfully gapped: 11
Length of query: 433
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 329
Effective length of database: 12,493,815
Effective search space: 4110465135
Effective search space used: 4110465135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012547
(1300 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapie... 611 e-177
Alignment gi|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens]. 171 2e-42
Alignment gi|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Ho... 157 2e-38
Alignment gi|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo... 153 4e-37
Alignment gi|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Ho... 142 5e-34
Alignment gi|NP_001159757.1| T-complex protein 1 subunit eta isoform d [H... 127 2e-29
Alignment gi|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Hom... 126 5e-29
Alignment gi|NP_001753.1| T-complex protein 1 subunit zeta isoform a [Hom... 124 3e-28
Alignment gi|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [H... 122 6e-28
Alignment gi|NP_006576.2| T-complex protein 1 subunit theta [Homo sapiens]. 116 4e-26
>ref|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapiens].
Length = 541
Score = 611 bits (1575), Expect(2) = e-177
Identities = 317/370 (85%), Positives = 326/370 (88%), Gaps = 1/370 (0%)
Frame = +2
Query: 149 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 328
MAS+GTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTM+TSLGPNGLDKM
Sbjct: 1 MASMGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKM 60
Query: 329 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXX 508
MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD
Sbjct: 61 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA 120
Query: 509 XQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNS 688
QLLDRGIHPIRIADGYEQAAR+AIEHLDKISDSVLVD+KDTEPLIQTAKTTLGSKVVNS
Sbjct: 121 EQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNS 180
Query: 689 CHRQMAEIAVNAVLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 868
CHRQMAEIAVNAVLTVADM RRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
Sbjct: 181 CHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 240
Query: 869 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLA 1048
K+VEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMI+QIKETGANLA
Sbjct: 241 KKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLA 300
Query: 1049 ICQWGFGDEANHLLLQKNLPGVRWVGSPESS*SPSHRGAHRA-AVLEAHAXKLXFPGLLX 1225
ICQWGF DEANHLLLQ NLP VRWVG PE G E A KL F GL+
Sbjct: 301 ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQ 360
Query: 1226 EISFGTTRDR 1255
EISFGTT+D+
Sbjct: 361 EISFGTTKDK 370
Score = 29.3 bits (64), Expect(2) = e-177
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1
Query: 1252 QMLVIKXCKNSRAVTI 1299
+MLVI+ CKNSRAVTI
Sbjct: 370 KMLVIEQCKNSRAVTI 385
>ref|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens].
Length = 539
Score = 171 bits (432), Expect = 2e-42
Identities = 100/269 (37%), Positives = 159/269 (59%), Gaps = 1/269 (0%)
Frame = +2
Query: 254 SHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELS 433
S+I AAKAVA+ ++TSLGP G+DKM+ D GDVT+TNDGATIL M V H A+++VELS
Sbjct: 36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELS 95
Query: 434 KSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSV 613
K+QD E GD +LL +GIHP I++ +++A IE L +S
Sbjct: 96 KAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRP- 154
Query: 614 LVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVAD-MHRRDVDFELIKVEGK 790
V++ D E L+ +A T+L SKVV+ ++ ++VNAV+ V D VD IK+ K
Sbjct: 155 -VELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKK 213
Query: 791 VGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDY 970
+GG ++D +L++G+++ + S+ + + VE AKI ++ PK +++ V+
Sbjct: 214 LGGTIDDCELVEGLVLTQKVSNSGITR-VEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQM 272
Query: 971 KALQKYEKEKFEEMIRQIKETGANLAICQ 1057
+ + E+ +++QIK+TG N+ + Q
Sbjct: 273 DRVLREERAYILNLVKQIKKTGCNVLLIQ 301
>ref|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Homo sapiens].
Length = 545
Score = 157 bits (398), Expect = 2e-38
Identities = 88/321 (27%), Positives = 175/321 (54%), Gaps = 3/321 (0%)
Frame = +2
Query: 188 RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 367
RP L++ ++ G + +I AAK +A+ ++T LGP + KM++D G + +TND
Sbjct: 5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 62
Query: 368 GATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRI 547
G IL + V H AK M+E+S++QD+E+GD L++ +HP +
Sbjct: 63 GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 122
Query: 548 ADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 727
Y +A I L KI S+ VD+ D++ ++ +++ +K ++ IA++AV
Sbjct: 123 ISAYRKALDDMISTLKKI--SIPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDAV 180
Query: 728 LTV--ADMHRRDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 898
V + R+++D + +VE GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 181 KMVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240
Query: 899 LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDEA 1078
L E K +++ +++T ED+ + + E+E +++ I + ++ I + G D A
Sbjct: 241 LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLA 300
Query: 1079 NHLLLQKNLPGVRWVGSPESS 1141
H L++ N+ +R V +++
Sbjct: 301 QHYLMRANITAIRRVRKTDNN 321
>ref|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo sapiens].
Length = 543
Score = 153 bits (386), Expect = 4e-37
Identities = 93/310 (30%), Positives = 167/310 (53%), Gaps = 5/310 (1%)
Frame = +2
Query: 191 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 370
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 62
Query: 371 ATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIA 550
ATIL ++DV H AK +V+++KSQD E+GD ++ G+HP I
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 551 DGYEQAARIAIEHLDKISDSV-LVDMKDTEPLIQ-TAKTTLGSKVVNSCHRQMAEIAVNA 724
+ A ++A+ + +I+ +V D + L++ A T L SK+++ A++ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 725 VLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 895
V+ + D+ + ++I ++ GG LED++L+ GV K FS+ PK+ + KIA
Sbjct: 183 VMMLDDL----LQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIA 238
Query: 896 ILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDE 1075
+L E K ++ V +VEDY+A+ E + + +I +GA + + + GD
Sbjct: 239 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDV 298
Query: 1076 ANHLLLQKNL 1105
A +++
Sbjct: 299 ATQYFADRDM 308
>ref|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Homo sapiens].
Length = 556
Score = 142 bits (359), Expect = 5e-34
Identities = 95/301 (31%), Positives = 157/301 (52%), Gaps = 7/301 (2%)
Frame = +2
Query: 242 EALKS-HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 418
E ++S ++MAA ++AN +K+SLGP GLDKM+VD GDVT+TNDGATIL +++V+H AK+
Sbjct: 15 ETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 74
Query: 419 MVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDK 598
+ EL+ QD E+GD +L+ + IHP + GY A + A+ ++++
Sbjct: 75 LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINE 134
Query: 599 ISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMHRRDV------ 760
+ V D + LI AKT++ SK++ A + V+AVL + R
Sbjct: 135 -NLIVNTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVN 193
Query: 761 DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKH 940
++K G+ ++ LI G ++ MPK++ +AKIA L + K K
Sbjct: 194 SVNILKAHGR---SQMESMLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGV 250
Query: 941 KLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDEANHLLLQKNLPGVRW 1120
++ +T E +++ E + +E I++I TGAN+ + G D ++ VR
Sbjct: 251 QVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRR 310
Query: 1121 V 1123
V
Sbjct: 311 V 311
>ref|NP_001159757.1| T-complex protein 1 subunit eta isoform d [Homo sapiens].
Length = 499
Score = 127 bits (320), Expect = 2e-29
Identities = 79/268 (29%), Positives = 141/268 (52%), Gaps = 5/268 (1%)
Frame = +2
Query: 317 LDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXX 496
+DK++VD G T++NDGATIL ++DV H AK +V+++KSQD E+GD
Sbjct: 1 MDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEF 60
Query: 497 XXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSV-LVDMKDTEPLIQ-TAKTTLG 670
++ G+HP I + A ++A+ + +I+ +V D + L++ A T L
Sbjct: 61 LKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALS 120
Query: 671 SKVVNSCHRQMAEIAVNAVLTVADMHRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDF 850
SK+++ A++ V+AV+ + D+ + ++I ++ GG LED++L+ GV K F
Sbjct: 121 SKLISQQKAFFAKMVVDAVMMLDDL----LQLKMIGIKKVQGGALEDSQLVAGVAFKKTF 176
Query: 851 SH---PQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQ 1021
S+ PK+ + KIA+L E K ++ V +VEDY+A+ E + + +
Sbjct: 177 SYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEK 236
Query: 1022 IKETGANLAICQWGFGDEANHLLLQKNL 1105
I +GA + + + GD A +++
Sbjct: 237 IHHSGAKVVLSKLPIGDVATQYFADRDM 264
>ref|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Homo sapiens].
Length = 535
Score = 126 bits (316), Expect = 5e-29
Identities = 87/267 (32%), Positives = 141/267 (52%), Gaps = 4/267 (1%)
Frame = +2
Query: 263 MAAKAVANTMKTSLGPNGLDKMMVD--KDGDVTVTNDGATILSMMDVDHQIAKLMVELSK 436
+ A A+ + +K++LGP G+DK+++ +D + VTNDGATIL + VD+ AK++V++S+
Sbjct: 30 IGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSR 89
Query: 437 SQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEH-LDKISDSV 613
QDDE+GD L+ + IHP I G+ +A + A E L D
Sbjct: 90 VQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSAVDHG 149
Query: 614 LVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMHRRDVDFELIKVEGKV 793
++K + L+ A TTL SK++ ++AV AVL + + + E I + K+
Sbjct: 150 SDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHIIKKL 205
Query: 794 GGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT-KHKLDVTSVEDY 970
GG L D+ L +G ++DK Q PK++E+AKI I + K K ++ V S
Sbjct: 206 GGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKV 264
Query: 971 KALQKYEKEKFEEMIRQIKETGANLAI 1051
++ EKEK +E + +I + G N I
Sbjct: 265 AEIEHAEKEKMKEKVERILKHGINCFI 291
>ref|NP_001753.1| T-complex protein 1 subunit zeta isoform a [Homo sapiens].
Length = 531
Score = 124 bits (310), Expect = 3e-28
Identities = 79/265 (29%), Positives = 136/265 (51%), Gaps = 3/265 (1%)
Frame = +2
Query: 245 ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMV 424
AL +I AA+ + + ++T+LGP G KM+V GD+ +T DG +L M + H A L+
Sbjct: 19 ALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIA 78
Query: 425 ELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKIS 604
+++ +QDD GD + G+HP I +G+E A A++ L+++
Sbjct: 79 KVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEVK 138
Query: 605 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVL-TVADMHRRD--VDFELI 775
S D E LI A+T+L +KV H ++A++ AV+ ++ + ++D +D +I
Sbjct: 139 VS---REMDRETLIDVARTSLRTKV----HAELADVLTEAVVDSILAIKKQDEPIDLFMI 191
Query: 776 KVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVT 955
++ DT LI+G+++D HP M K+VEDA I E K +
Sbjct: 192 EIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYK 251
Query: 956 SVEDYKALQKYEKEKFEEMIRQIKE 1030
S E+ + L K E++ E+ +++I E
Sbjct: 252 SAEEREKLVKAERKFIEDRVKKIIE 276
>ref|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [Homo sapiens].
Length = 530
Score = 122 bits (307), Expect = 6e-28
Identities = 84/266 (31%), Positives = 141/266 (53%), Gaps = 6/266 (2%)
Frame = +2
Query: 245 ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMV 424
AL +I AA+ + + ++T+LGP G KM+V GD+ +T DG +L M + H A L+
Sbjct: 19 ALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLDEMQIQHPTASLIA 78
Query: 425 ELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKIS 604
+++ +QDD GD + G+HP IA+G+E A A+E L+++
Sbjct: 79 KVATAQDDVTGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAKIKALEVLEEV- 137
Query: 605 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMHRR---DVDF--- 766
V +MK + L+ A+T+L +KV + E+ V++VL V RR +D
Sbjct: 138 -KVTKEMK-RKILLDVARTSLQTKVHAELADVLTEVVVDSVLAV----RRPGYPIDLFMV 191
Query: 767 ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKL 946
E+++++ K+G DTKLI+G+++D HP M K+VEDA I I E K +
Sbjct: 192 EIMEMKHKLG---TDTKLIQGLVLDHGARHPDMKKRVEDAFILICNVSLEYEKTEVNSGF 248
Query: 947 DVTSVEDYKALQKYEKEKFEEMIRQI 1024
+ E+ + L K E++ E+ +++I
Sbjct: 249 FYKTAEEKEKLVKAERKFIEDRVQKI 274
>ref|NP_006576.2| T-complex protein 1 subunit theta [Homo sapiens].
Length = 548
Score = 116 bits (291), Expect = 4e-26
Identities = 83/292 (28%), Positives = 142/292 (48%)
Frame = +2
Query: 242 EALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 421
EA+ +I A K +A T +T+ GPNG++KM+++ + VTND ATIL ++V H AK++
Sbjct: 27 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 86
Query: 422 VELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKI 601
V S Q+ E+GD +LL G+ + +GYE A R A E L +
Sbjct: 87 VMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNL 146
Query: 602 SDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMHRRDVDFELIKV 781
+++D + + +T++ SK + IA V D +VD I+V
Sbjct: 147 VCCSAKNLRDIDEVSSLLRTSIMSKQYGNEVFLAKLIAQACVSIFPDSGHFNVD--NIRV 204
Query: 782 EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSV 961
+G + + ++ G++ K+ V+DAKIA+ +CPF+ +TK + + +
Sbjct: 205 CKILGSGISSSSVLHGMVFKKETEGD--VTSVKDAKIAVYSCPFDGMITETKGTVLIKTA 262
Query: 962 EDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFGDEANHLLLQKNLPGVR 1117
E+ K E+ + ++ I +TGAN+ + D A H + N+ VR
Sbjct: 263 EELMNFSKGEENLMDAQVKAIADTGANVVVTGGKVADMALHYANKYNIMLVR 314
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,276,704
Number of extensions: 1264797
Number of successful extensions: 4238
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4198
Number of HSP's successfully gapped: 17
Length of query: 433
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,835,944
Effective search space: 4866189632
Effective search space used: 4866189632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012547
(1300 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896487.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 375 e-101
gb|GL892845.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 369 3e-99
>gb|GL896487.1| Sus scrofa unplaced genomic scaffold chrU_scaffold822
Length = 12888
Score = 375 bits (189), Expect = e-101
Identities = 192/193 (99%)
Strand = Plus / Minus
Query: 679 ggttaacagctgtcaccgacaaatggccgagattgccgtgaatgccgtcctcaccgtggc 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7363 ggttaacagctgtcaccgacaaatggccgagattgccgtgaatgccgtcctcaccgtggc 7304
Query: 739 cgacatgcatcgcagagacgttgactttgagctcatcaaagtagaaggcaaggtgggcgg 798
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7303 cgacatgcagcgcagagacgttgactttgagctcatcaaagtagaaggcaaggtgggcgg 7244
Query: 799 gaggctggaggacaccaagctgatcaagggcgtgatcgtcgacaaggacttcagtcaccc 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7243 gaggctggaggacaccaagctgatcaagggcgtgatcgtcgacaaggacttcagtcaccc 7184
Query: 859 ccagatgccaaaa 871
|||||||||||||
Sbjct: 7183 ccagatgccaaaa 7171
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 314 gggcttgataagatgatggtggataaggatggcgacgtgactgtgaccaatgacggtgcc 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9188 gggcttgataagatgatggtggataaggatggcgacgtgactgtgaccaatgacggtgcc 9129
Query: 374 accattttaagcatgatggacgtggaccatcagatcgccaagctcatggttgaactgtcc 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9128 accattttaagcatgatggacgtggaccatcagatcgccaagctcatggttgaactgtcc 9069
Query: 434 aaatcacaggatgacgagatcggggatggaaccacaggagtggtcg 479
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9068 aaatcacaggatgacgagatcggggatggaaccacaggagtggtcg 9023
Score = 297 bits (150), Expect = 8e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 872 caagtggaagatgcaaagattgcgattctcacgtgtccatttgaaccgccgaaaccaaag 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7095 caagtggaagatgcaaagattgcgattctcacgtgtccatttgaaccgccgaaaccaaag 7036
Query: 932 acaaagcataagctggatgtgacctcagtagaagattacaaagcccttcagaaatacgaa 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7035 acaaagcataagctggatgtgacctcagtagaagattacaaagcccttcagaaatacgaa 6976
Query: 992 aaggagaagtttgaggagatgattcggcag 1021
||||||||||||||||||||||||||||||
Sbjct: 6975 aaggagaagtttgaggagatgattcggcag 6946
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 479 gtcctggccggtgccctgttggaagaagctgagcagctgctggaccgaggcattcacccg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8053 gtcctggccggtgccctgttggaagaagctgagcagctgctggaccgaggcattcacccg 7994
Query: 539 atccggattgcagacggctacgagcaggctgcccgcatcgccatcgagcacctggacaa 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7993 atccggattgcagacggctacgagcaggctgcccgcatcgccatcgagcacctggacaa 7935
Score = 208 bits (105), Expect = 6e-51
Identities = 152/165 (92%), Gaps = 3/165 (1%)
Strand = Plus / Minus
Query: 1139 agttgatcgccatc-ccaccggggggcgcatcgtgccgcggttctcgaagctcacgccg- 1196
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3715 agttgatcgccatcgccaccggggggcgcatcgtgccgcggttctcggagctcacgccgg 3656
Query: 1197 anaaactggncttcccggggctgttgaangagatctcgttcgggacgaccagggaca-ga 1255
| || |||| |||| |||||||| |||| |||||||||||||||||||||| ||||| ||
Sbjct: 3655 agaagctgggcttcgcggggctggtgaaggagatctcgttcgggacgaccaaggacaaga 3596
Query: 1256 tgctggtcatcaagcantgtaagaactccagagccgtcaccatct 1300
||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 3595 tgctggtcatcgagcagtgtaagaactccagagccgtcaccatct 3551
Score = 192 bits (97), Expect = 3e-46
Identities = 112/117 (95%)
Strand = Plus / Minus
Query: 1019 cagattaaggaaactggcgctaacctagctatctgccaatggggatttggcgatgaagca 1078
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4551 cagattaaggaaactggcgctaacctagctatctgccaatggggatttgacgatgaagca 4492
Query: 1079 aatcatttacttcttcagaaaaacttgcctggcgttcgttgggttggaagccctgaa 1135
|||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct: 4491 aatcatttacttcttcagaataacttgcctgcggttcgttgggttggaggccctgaa 4435
Score = 119 bits (60), Expect = 4e-24
Identities = 63/64 (98%)
Strand = Plus / Minus
Query: 252 agtctcacataatggcagcaaaggccgtagcaaatacaatgaaaacatcacttggaccaa 311
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10033 agtctcacataatggcagcaaaggccgtagcgaatacaatgaaaacatcacttggaccaa 9974
Query: 312 atgg 315
||||
Sbjct: 9973 atgg 9970
>gb|GL892845.1| Sus scrofa unplaced genomic scaffold chrU_scaffold167
Length = 207
Score = 369 bits (186), Expect = 3e-99
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 1 aaactagtctcaggtgagaaataagtctcgggaggcctgtgctgcgcacgcgcgagctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 aaactagtctcaggtgagaaataagtctcgggaggcctgtgctgcgcacgcgcgagctct 81
Query: 61 tggcgccctcccgcgagaggaaagtactctctcggttccggagtggacaccgccggttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 tggcgccctcccgcgagaggaaagtactctctcggttccggagtggacaccgccggttgc 141
Query: 121 gggagagaactcctgctgctgccgcaccatggcgtccgtggggaccctcgccttcgacga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 gggagagaactcctgctgctgccgcaccatggcgtccgtggggaccctcgccttcgacga 201
Query: 181 atatgg 186
||||||
Sbjct: 202 atatgg 207
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,829,860
Number of extensions: 138
Number of successful extensions: 138
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 8
Length of query: 1300
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1279
Effective length of database: 2,808,413,156
Effective search space: 3591960426524
Effective search space used: 3591960426524
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)