Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012548
(2034 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848303.1| PREDICTED: similar to T-complex protein 1, epsi... 1006 0.0
Alignment gi|XP_855829.1| PREDICTED: similar to T-complex protein 1, epsi... 986 0.0
Alignment gi|XP_539390.2| PREDICTED: similar to T-complex protein 1, delt... 317 4e-86
Alignment gi|XP_537245.2| PREDICTED: similar to chaperonin containing TCP... 266 7e-71
Alignment gi|XP_862776.1| PREDICTED: similar to T-complex protein 1, alph... 246 5e-65
Alignment gi|XP_541181.1| PREDICTED: similar to T-complex protein 1, alph... 244 2e-64
Alignment gi|XP_531675.2| PREDICTED: similar to chaperonin containing TCP... 243 4e-64
Alignment gi|XP_864328.1| PREDICTED: similar to chaperonin containing TCP... 243 4e-64
Alignment gi|XP_862675.1| PREDICTED: similar to T-complex protein 1, alph... 239 7e-63
Alignment gi|XP_864287.1| PREDICTED: similar to chaperonin containing TCP... 236 6e-62
>ref|XP_848303.1| PREDICTED: similar to T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) isoform 1 [Canis
familiaris].
Length = 541
Score = 1006 bits (2600), Expect = 0.0
Identities = 515/541 (95%), Positives = 522/541 (96%)
Frame = +1
Query: 406 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 585
MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTM+TSLGPNGLDKM
Sbjct: 1 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKM 60
Query: 586 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXX 765
MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD
Sbjct: 61 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA 120
Query: 766 XQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNS 945
QLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVD+KDTEPLIQTAKTTLGSKVVNS
Sbjct: 121 EQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNS 180
Query: 946 CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 1125
CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
Sbjct: 181 CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 240
Query: 1126 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLA 1305
KQVE+AKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMI+QIKETGANLA
Sbjct: 241 KQVENAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLA 300
Query: 1306 ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVK 1485
ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELT EKLGFAGLVK
Sbjct: 301 ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGLVK 360
Query: 1486 EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY 1665
EISFGTTKDKMLVIEQCKNSRAVT+FIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY
Sbjct: 361 EISFGTTKDKMLVIEQCKNSRAVTVFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY 420
Query: 1666 GGGAAEIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRAR 1845
GGGAAEIACALAVSQEADKCPTLEQYAMRAFADALEVIPMAL+ENSGMNPIQTMTEVRAR
Sbjct: 421 GGGAAEIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRAR 480
Query: 1846 QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKSE 2025
QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILK DDIRKPG+SE
Sbjct: 481 QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESE 540
Query: 2026 E 2028
E
Sbjct: 541 E 541
>ref|XP_855829.1| PREDICTED: similar to T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) isoform 2 [Canis
familiaris].
Length = 541
Score = 986 bits (2550), Expect = 0.0
Identities = 508/541 (93%), Positives = 516/541 (95%)
Frame = +1
Query: 406 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 585
MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTM+TSLGPNGLDKM
Sbjct: 1 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKM 60
Query: 586 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXX 765
MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD
Sbjct: 61 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA 120
Query: 766 XQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNS 945
QLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVD+KDTEPLIQTAKTTLGSKV +
Sbjct: 121 EQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVFSK 180
Query: 946 CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 1125
MAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
Sbjct: 181 KKDIMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 240
Query: 1126 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLA 1305
KQVE+AKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMI+QIKETGANLA
Sbjct: 241 KQVENAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLA 300
Query: 1306 ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVK 1485
ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELT EKLGFAGLVK
Sbjct: 301 ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGLVK 360
Query: 1486 EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY 1665
EISFGTTKDKMLVIEQCKNSRAVT+FIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY
Sbjct: 361 EISFGTTKDKMLVIEQCKNSRAVTVFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY 420
Query: 1666 GGGAAEIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRAR 1845
GGGAAEIACALAVSQEADKCPTLEQYAMRAFADALEVIPMAL+ENSGMNPIQTMTEVRAR
Sbjct: 421 GGGAAEIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRAR 480
Query: 1846 QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKSE 2025
QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILK DDIRKPG+SE
Sbjct: 481 QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESE 540
Query: 2026 E 2028
E
Sbjct: 541 E 541
>ref|XP_539390.2| PREDICTED: similar to T-complex protein 1, delta subunit
(TCP-1-delta) (CCT-delta) (A45) [Canis familiaris].
Length = 539
Score = 317 bits (811), Expect = 4e-86
Identities = 193/528 (36%), Positives = 308/528 (58%), Gaps = 7/528 (1%)
Frame = +1
Query: 442 GRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTN 621
GR +D+D+ +++ S+I AAKAVA+ ++TSLGP G+DKM+ D GDVT+TN
Sbjct: 18 GRSKTAYQDRDKPAQIRF-----SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITN 72
Query: 622 DGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIR 801
DGATIL M V H A+++VELSK+QD E GD +LL +GIHP
Sbjct: 73 DGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTI 132
Query: 802 IADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 981
I++ +++A IE L +S V ++ D E L+ +A T+L SKVV+ ++ ++VNA
Sbjct: 133 ISESFQKALEKGIEILTDMSRPV--ELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNA 190
Query: 982 VLTVAD-MQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAIL 1158
V+ V D VD IK+ K+GG ++D +L++G+++ + ++ + + VE AKI ++
Sbjct: 191 VMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLI 249
Query: 1159 TCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGF----- 1323
PK +++ V+ + + E+ +++QIK+TG N+ + Q
Sbjct: 250 QFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDAL 309
Query: 1324 DDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGT 1503
D A H L + + V+ + +IE I G + V + T + LG A L +E++
Sbjct: 310 SDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNG 369
Query: 1504 TKDKMLVIEQCKN-SRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAA 1680
+ K+L I C + + VTI +RG NK++IEEA+RS+HDALCVIR L++ ++ GGGA
Sbjct: 370 S-GKLLKITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAP 428
Query: 1681 EIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEM 1860
EI AL +++ + +E Y +RAFADA+EVIP LAEN+G+NPI T+TE+R R +
Sbjct: 429 EIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHA-QG 487
Query: 1861 NPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDI 2004
GI+ G +++ ++ V++ L+ ++LAT+ VR ILK DD+
Sbjct: 488 EKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDV 535
>ref|XP_537245.2| PREDICTED: similar to chaperonin containing TCP1, subunit 3 (gamma)
isoform 1 [Canis familiaris].
Length = 544
Score = 266 bits (679), Expect = 7e-71
Identities = 162/523 (30%), Positives = 285/523 (54%), Gaps = 3/523 (0%)
Frame = +1
Query: 445 RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 624
RP L++ ++ G + +I AAK +A+ ++T LGP + KM++D G + +TND
Sbjct: 4 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 61
Query: 625 GATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRI 804
G IL + V H AK M+E+S++QD+E+GD L++ +HP +
Sbjct: 62 GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 121
Query: 805 ADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 984
Y +A I L KIS V D + + ++ +++ +K ++ IA++AV
Sbjct: 122 ISAYRKALDDMISTLKKISTPV--DTNNRDMMLNIINSSITTKAISRWSSLACNIALDAV 179
Query: 985 LTVA--DMQRRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 1155
TV + R+++D + +VE GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 180 RTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 239
Query: 1156 LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEA 1335
L E K +++ +++T ED+ + + E+E +++ I ++ I + G D A
Sbjct: 240 LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 299
Query: 1336 NHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDK 1515
H L++ N+ A+R V + IA A G RIV R EL + +G V EI +
Sbjct: 300 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGVLEIK-KIGDEY 358
Query: 1516 MLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACA 1695
I +CK+ +A TI +RG +K ++ E +R+L DA+ V RN++ D ++V GGGA+E+A A
Sbjct: 359 FTFITECKDPKACTILLRGASKEVLSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVA 418
Query: 1696 LAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALG 1875
A+++++ +EQ+ RA A ALEVIP L +N G + I+ +T +RA+ +E G
Sbjct: 419 HALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWG 478
Query: 1876 IDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDI 2004
++ DMK+ + E L K Q A + ++L+ DDI
Sbjct: 479 VNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDI 521
>ref|XP_862776.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 8 [Canis familiaris].
Length = 556
Score = 246 bits (629), Expect = 5e-65
Identities = 165/524 (31%), Positives = 278/524 (53%), Gaps = 20/524 (3%)
Frame = +1
Query: 499 EALKS-HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 675
EA++S ++MAA ++AN +K+SLGP GLDKM+VD GDVT+TNDGATIL +++V+H AK+
Sbjct: 15 EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 74
Query: 676 MVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDK 855
+ EL+ QD E+GD +L+ + IHP + GY A + A+ +
Sbjct: 75 LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRY--- 131
Query: 856 ISDSVLV--DMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDV---- 1017
IS+++++ D + LI AKT++ SK++ A + V+AVL V R
Sbjct: 132 ISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDVRGQPRYP 191
Query: 1018 --DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 1191
++K G+ ++ LI G ++ + + MPK++ +AKIA L + K K
Sbjct: 192 VNSVNILKAHGR---SQTESLLISGYALNCEKCNASMPKRIVNAKIACLDFSLQKTKMKL 248
Query: 1192 KHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAV 1371
++ +T E +++ E + +E I++I TGAN+ + G DD ++ AV
Sbjct: 249 GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAV 308
Query: 1372 RWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKE----ISFGTTKDKMLVIEQCK 1539
R V +++ IA A+G ++ + L E+ A ++ + + D++++I+ K
Sbjct: 309 RRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTK 368
Query: 1540 NSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEAD 1719
+ +I +RG N + +E +RSLHDALCV++ ++ VV GGGA E A ++ + A
Sbjct: 369 ARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYAT 428
Query: 1720 KCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRA-RQVKEMNPA------LGI 1878
+ EQ A+ FA +L VIP LA N+ + + ++RA ++NP +G+
Sbjct: 429 SMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGL 488
Query: 1879 DCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRK 2010
D ++ D KQ V E I K + + AT+ IL+ DD+ K
Sbjct: 489 DLINGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532
>ref|XP_541181.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 1 [Canis familiaris].
Length = 556
Score = 244 bits (623), Expect = 2e-64
Identities = 165/524 (31%), Positives = 276/524 (52%), Gaps = 20/524 (3%)
Frame = +1
Query: 499 EALKS-HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 675
EA++S ++MAA ++AN +K+SLGP GLDKM+VD GDVT+TNDGATIL +++V+H AK+
Sbjct: 15 EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 74
Query: 676 MVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDK 855
+ EL+ QD E+GD +L+ + IHP + GY A + A+ +
Sbjct: 75 LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRY--- 131
Query: 856 ISDSVLV--DMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDV---- 1017
IS+++++ D + LI AKT++ SK++ A + V+AVL V R
Sbjct: 132 ISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDVRGQPRYP 191
Query: 1018 --DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 1191
++K G+ ++ LI G ++ MPK++ +AKIA L + K K
Sbjct: 192 VNSVNILKAHGR---SQTESLLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 248
Query: 1192 KHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAV 1371
++ +T E +++ E + +E I++I TGAN+ + G DD ++ AV
Sbjct: 249 GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAV 308
Query: 1372 RWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKE----ISFGTTKDKMLVIEQCK 1539
R V +++ IA A+G ++ + L E+ A ++ + + D++++I+ K
Sbjct: 309 RRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTK 368
Query: 1540 NSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEAD 1719
+ +I +RG N + +E +RSLHDALCV++ ++ VV GGGA E A ++ + A
Sbjct: 369 ARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYAT 428
Query: 1720 KCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRA-RQVKEMNPA------LGI 1878
+ EQ A+ FA +L VIP LA N+ + + ++RA ++NP +G+
Sbjct: 429 SMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGL 488
Query: 1879 DCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRK 2010
D ++ D KQ V E I K + + AT+ IL+ DD+ K
Sbjct: 489 DLINGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532
>ref|XP_531675.2| PREDICTED: similar to chaperonin containing TCP1, subunit 2 isoform 1
[Canis familiaris].
Length = 535
Score = 243 bits (621), Expect = 4e-64
Identities = 163/504 (32%), Positives = 264/504 (52%), Gaps = 4/504 (0%)
Frame = +1
Query: 511 SHIMAAKAVANTMKTSLGPNGLDKMMVD--KDGDVTVTNDGATILSMMDVDHQIAKLMVE 684
S + A A+ + +K++LGP G+DK+++ +D + VTNDGATIL + VD+ AK++V+
Sbjct: 27 SSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVD 86
Query: 685 LSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHL-DKIS 861
+S+ QDDE+GD L+ + IHP I G+ +A + A + L +
Sbjct: 87 MSRVQDDEVGDGTTSVTVLAAELLREAETLIAKKIHPQTIIAGWREATKAARQALLNSAV 146
Query: 862 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVE 1041
D ++K + L+ A TTL SK++ ++AV AVL + + + E I V
Sbjct: 147 DHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTQLAVEAVLRL----KGSGNLEAIHVI 202
Query: 1042 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT-KHKLDVTSV 1218
K+GG L D+ L +G ++DK Q PK++E+AKI I + K K ++ V S
Sbjct: 203 KKLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDST 261
Query: 1219 EDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIE 1398
++ EKEK +E + +I + G N I + + L + A+ +E
Sbjct: 262 AKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVE 321
Query: 1399 LIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGN 1578
+A+ TGG I F KLG L++E+ G +DK++ A TI +RG
Sbjct: 322 RLALVTGGEIASTFDHPELVKLGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGAT 379
Query: 1579 KMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKCPTLEQYAMRAF 1758
+ I++EA+RSLHDALCV+ ++D+R VYGGG +E+ A AV+Q A + P E AM ++
Sbjct: 380 QQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESY 439
Query: 1759 ADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLI 1938
A AL ++P +A+N+G + + ++RA E N G+D DM + E+
Sbjct: 440 AKALRMLPTIIADNAGYDSADLVAQLRAAH-SEGNTTAGLDMKEGTIGDMAVLGITESFQ 498
Query: 1939 GKKQQISLATQMVRMILKNDDIRK 2010
K+Q + A + +IL+ D+I K
Sbjct: 499 VKRQVLLSAAEAAEVILRVDNIIK 522
>ref|XP_864328.1| PREDICTED: similar to chaperonin containing TCP1, subunit 3 (gamma)
isoform 6 [Canis familiaris].
Length = 499
Score = 243 bits (621), Expect = 4e-64
Identities = 149/478 (31%), Positives = 261/478 (54%), Gaps = 3/478 (0%)
Frame = +1
Query: 580 KMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXX 759
KM++D G + +TNDG IL + V H AK M+E+S++QD+E+GD
Sbjct: 2 KMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLS 61
Query: 760 XXXQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVV 939
L++ +HP + Y +A I L KIS V D + + ++ +++ +K +
Sbjct: 62 VAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPV--DTNNRDMMLNIINSSITTKAI 119
Query: 940 NSCHRQMAEIAVNAVLTVA--DMQRRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDFS 1110
+ IA++AV TV + R+++D + +VE GG +ED+ +++GV+++KD +
Sbjct: 120 SRWSSLACNIALDAVRTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVT 179
Query: 1111 HPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKET 1290
HP+M + +++ +I +L E K +++ +++T ED+ + + E+E +++ I
Sbjct: 180 HPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHL 239
Query: 1291 GANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGF 1470
++ I + G D A H L++ N+ A+R V + IA A G RIV R EL + +G
Sbjct: 240 KPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGT 299
Query: 1471 AGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRD 1650
V EI + I +CK+ +A TI +RG +K ++ E +R+L DA+ V RN++ D
Sbjct: 300 GAGVLEIK-KIGDEYFTFITECKDPKACTILLRGASKEVLSEVERNLQDAMQVCRNVLLD 358
Query: 1651 NRVVYGGGAAEIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMT 1830
++V GGGA+E+A A A+++++ +EQ+ RA A ALEVIP L +N G + I+ +T
Sbjct: 359 PQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLT 418
Query: 1831 EVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDI 2004
+RA+ +E G++ DMK+ + E L K Q A + ++L+ DDI
Sbjct: 419 SLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDI 476
>ref|XP_862675.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 4 [Canis familiaris].
Length = 558
Score = 239 bits (610), Expect = 7e-63
Identities = 165/526 (31%), Positives = 276/526 (52%), Gaps = 22/526 (4%)
Frame = +1
Query: 499 EALKS-HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 675
EA++S ++MAA ++AN +K+SLGP GLDKM+VD GDVT+TNDGATIL +++V+H AK+
Sbjct: 15 EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 74
Query: 676 MVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDK 855
+ EL+ QD E+GD +L+ + IHP + GY A + A+ +
Sbjct: 75 LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRY--- 131
Query: 856 ISDSVLV--DMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDV---- 1017
IS+++++ D + LI AKT++ SK++ A + V+AVL V R
Sbjct: 132 ISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDVRGQPRYP 191
Query: 1018 --DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 1191
++K G+ ++ LI G ++ MPK++ +AKIA L + K K
Sbjct: 192 VNSVNILKAHGR---SQTESLLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 248
Query: 1192 KHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAV 1371
++ +T E +++ E + +E I++I TGAN+ + G DD ++ AV
Sbjct: 249 GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAV 308
Query: 1372 RWVGGPEIELIAIATG--GRIVPRFSELTPEKLGFAGLVKE----ISFGTTKDKMLVIEQ 1533
R V +++ IA A+G ++ + L E+ A ++ + + D++++I+
Sbjct: 309 RRVLKRDLKRIAKASGVVSTVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKN 368
Query: 1534 CKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQE 1713
K + +I +RG N + +E +RSLHDALCV++ ++ VV GGGA E A ++ +
Sbjct: 369 TKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENY 428
Query: 1714 ADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRA-RQVKEMNPA------L 1872
A + EQ A+ FA +L VIP LA N+ + + ++RA ++NP +
Sbjct: 429 ATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWI 488
Query: 1873 GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRK 2010
G+D ++ D KQ V E I K + + AT+ IL+ DD+ K
Sbjct: 489 GLDLINGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 534
>ref|XP_864287.1| PREDICTED: similar to chaperonin containing TCP1, subunit 3 (gamma)
isoform 4 [Canis familiaris].
Length = 523
Score = 236 bits (602), Expect = 6e-62
Identities = 153/523 (29%), Positives = 272/523 (52%), Gaps = 3/523 (0%)
Frame = +1
Query: 445 RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 624
RP L++ ++ G + +I AAK +A+ ++T LGP + K+ V
Sbjct: 4 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKIQVQ---------- 51
Query: 625 GATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRI 804
H AK M+E+S++QD+E+GD L++ +HP +
Sbjct: 52 -----------HPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 100
Query: 805 ADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 984
Y +A I L KIS V D + + ++ +++ +K ++ IA++AV
Sbjct: 101 ISAYRKALDDMISTLKKISTPV--DTNNRDMMLNIINSSITTKAISRWSSLACNIALDAV 158
Query: 985 LTVA--DMQRRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 1155
TV + R+++D + +VE GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 159 RTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 218
Query: 1156 LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEA 1335
L E K +++ +++T ED+ + + E+E +++ I ++ I + G D A
Sbjct: 219 LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 278
Query: 1336 NHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDK 1515
H L++ N+ A+R V + IA A G RIV R EL + +G V EI +
Sbjct: 279 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGVLEIK-KIGDEY 337
Query: 1516 MLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACA 1695
I +CK+ +A TI +RG +K ++ E +R+L DA+ V RN++ D ++V GGGA+E+A A
Sbjct: 338 FTFITECKDPKACTILLRGASKEVLSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVA 397
Query: 1696 LAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALG 1875
A+++++ +EQ+ RA A ALEVIP L +N G + I+ +T +RA+ +E G
Sbjct: 398 HALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWG 457
Query: 1876 IDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDI 2004
++ DMK+ + E L K Q A + ++L+ DDI
Sbjct: 458 VNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDI 500
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 71,564,578
Number of extensions: 1824143
Number of successful extensions: 7157
Number of sequences better than 1.0e-05: 57
Number of HSP's gapped: 7029
Number of HSP's successfully gapped: 66
Length of query: 678
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 568
Effective length of database: 15,207,544
Effective search space: 8637884992
Effective search space used: 8637884992
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012548
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012548
(2034 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsil... 1003 0.0
Alignment gi|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subun... 1003 0.0
Alignment gi|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subun... 1003 0.0
Alignment gi|NP_001033283.1| T-complex protein 1 subunit delta [Bos tauru... 313 5e-85
Alignment gi|NP_001017934.2| T-complex protein 1 subunit gamma [Bos tauru... 271 2e-72
Alignment gi|NP_001033175.1| T-complex protein 1 subunit alpha [Bos tauru... 244 2e-64
Alignment gi|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus]. 241 2e-63
Alignment gi|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus]. 228 2e-59
Alignment gi|NP_001029714.1| T-complex protein 1 subunit zeta [Bos taurus]. 227 3e-59
Alignment gi|NP_001029814.1| T-complex protein 1 subunit zeta-2 [Bos taur... 214 2e-55
>ref|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsilon) [Bos taurus].
Length = 541
Score = 1003 bits (2594), Expect = 0.0
Identities = 515/541 (95%), Positives = 521/541 (96%)
Frame = +1
Query: 406 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 585
MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM
Sbjct: 1 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 60
Query: 586 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXX 765
MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD
Sbjct: 61 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA 120
Query: 766 XQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNS 945
QLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMK+TEPLIQTAKTTLGSKVVNS
Sbjct: 121 EQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNS 180
Query: 946 CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 1125
CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
Sbjct: 181 CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 240
Query: 1126 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLA 1305
KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVED+KALQKYEKEKFEEMIRQIKETGANLA
Sbjct: 241 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLA 300
Query: 1306 ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVK 1485
ICQWGFDDEANHLLLQN+LPAVRWVGGPEIELIAIATGGRIVPRFSELT EKLGFAGLVK
Sbjct: 301 ICQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVK 360
Query: 1486 EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY 1665
EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY
Sbjct: 361 EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY 420
Query: 1666 GGGAAEIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRAR 1845
GGGAAEI+CALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRAR
Sbjct: 421 GGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRAR 480
Query: 1846 QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKSE 2025
QVKE+NPALGIDCLHKGTNDMK QHVIETLIGKKQQISLATQMVRMILK DDIRKPG+SE
Sbjct: 481 QVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESE 540
Query: 2026 E 2028
E
Sbjct: 541 E 541
>ref|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
taurus].
Length = 541
Score = 1003 bits (2594), Expect = 0.0
Identities = 515/541 (95%), Positives = 521/541 (96%)
Frame = +1
Query: 406 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 585
MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM
Sbjct: 1 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 60
Query: 586 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXX 765
MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD
Sbjct: 61 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA 120
Query: 766 XQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNS 945
QLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMK+TEPLIQTAKTTLGSKVVNS
Sbjct: 121 EQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNS 180
Query: 946 CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 1125
CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
Sbjct: 181 CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 240
Query: 1126 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLA 1305
KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVED+KALQKYEKEKFEEMIRQIKETGANLA
Sbjct: 241 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLA 300
Query: 1306 ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVK 1485
ICQWGFDDEANHLLLQN+LPAVRWVGGPEIELIAIATGGRIVPRFSELT EKLGFAGLVK
Sbjct: 301 ICQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVK 360
Query: 1486 EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY 1665
EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY
Sbjct: 361 EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY 420
Query: 1666 GGGAAEIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRAR 1845
GGGAAEI+CALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRAR
Sbjct: 421 GGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRAR 480
Query: 1846 QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKSE 2025
QVKE+NPALGIDCLHKGTNDMK QHVIETLIGKKQQISLATQMVRMILK DDIRKPG+SE
Sbjct: 481 QVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESE 540
Query: 2026 E 2028
E
Sbjct: 541 E 541
>ref|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
taurus].
Length = 541
Score = 1003 bits (2594), Expect = 0.0
Identities = 515/541 (95%), Positives = 521/541 (96%)
Frame = +1
Query: 406 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 585
MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM
Sbjct: 1 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 60
Query: 586 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXX 765
MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD
Sbjct: 61 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA 120
Query: 766 XQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNS 945
QLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMK+TEPLIQTAKTTLGSKVVNS
Sbjct: 121 EQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNS 180
Query: 946 CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 1125
CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
Sbjct: 181 CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 240
Query: 1126 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLA 1305
KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVED+KALQKYEKEKFEEMIRQIKETGANLA
Sbjct: 241 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLA 300
Query: 1306 ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVK 1485
ICQWGFDDEANHLLLQN+LPAVRWVGGPEIELIAIATGGRIVPRFSELT EKLGFAGLVK
Sbjct: 301 ICQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVK 360
Query: 1486 EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY 1665
EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY
Sbjct: 361 EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY 420
Query: 1666 GGGAAEIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRAR 1845
GGGAAEI+CALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRAR
Sbjct: 421 GGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRAR 480
Query: 1846 QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKSE 2025
QVKE+NPALGIDCLHKGTNDMK QHVIETLIGKKQQISLATQMVRMILK DDIRKPG+SE
Sbjct: 481 QVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESE 540
Query: 2026 E 2028
E
Sbjct: 541 E 541
>ref|NP_001033283.1| T-complex protein 1 subunit delta [Bos taurus].
Length = 542
Score = 313 bits (801), Expect = 5e-85
Identities = 191/528 (36%), Positives = 307/528 (58%), Gaps = 7/528 (1%)
Frame = +1
Query: 442 GRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTN 621
GR +D+D+ +++ S+I AAKAVA+ ++TSLGP G+DKM+ D GDVT+TN
Sbjct: 21 GRGKSAYQDRDKPAQIRF-----SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITN 75
Query: 622 DGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIR 801
DGATIL M V H A+++VELSK+QD E GD +LL +GIHP
Sbjct: 76 DGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTI 135
Query: 802 IADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 981
I++ +++A IE L +S ++ D E L+ +A T+L SKVV+ ++ ++V+A
Sbjct: 136 ISESFQKALEKGIEILTDMSRPE--ELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDA 193
Query: 982 VLTVAD-MQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAIL 1158
V+ V D VD IK+ K+GG ++D +L++G+++ + ++ + + VE AKI ++
Sbjct: 194 VMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLI 252
Query: 1159 TCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGF----- 1323
PK +++ V+ + + E+ +++QIK+TG N+ + Q
Sbjct: 253 QFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDAL 312
Query: 1324 DDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGT 1503
D A H L + + V+ + +IE I G + V + T + LG A L +E+S
Sbjct: 313 SDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNG 372
Query: 1504 TKDKMLVIEQCKN-SRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAA 1680
+ K++ I C + + VTI +RG NK++IEEA+RS+HDALCVIR L++ ++ GGGA
Sbjct: 373 S-GKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAP 431
Query: 1681 EIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEM 1860
EI AL +++ + +E Y +RAFADA+EVIP LAEN+G+NPI T+TE+R R +
Sbjct: 432 EIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHA-QG 490
Query: 1861 NPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDI 2004
GI+ G +++ ++ V++ L+ ++LAT+ VR ILK DD+
Sbjct: 491 EKTTGINVRKGGISNILEEQVVQPLLVSVSALTLATETVRSILKIDDV 538
>ref|NP_001017934.2| T-complex protein 1 subunit gamma [Bos taurus].
Length = 545
Score = 271 bits (693), Expect = 2e-72
Identities = 166/524 (31%), Positives = 291/524 (55%), Gaps = 4/524 (0%)
Frame = +1
Query: 445 RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 624
RP L++ ++ G + +I AAK +A+ ++T LGP + KM++D G + +TND
Sbjct: 5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 62
Query: 625 GATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRI 804
G IL + V H AK M+E+S++QD+E+GD L++ +HP +
Sbjct: 63 GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 122
Query: 805 ADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 984
Y +A I L KIS + VD + + ++ +++ +KV++ IA++AV
Sbjct: 123 ISAYRKALDDMISTLKKIS--IPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAV 180
Query: 985 LTVA--DMQRRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 1155
TV + R+++D + +VE GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 181 KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240
Query: 1156 LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEA 1335
L E K +++ +++T ED+ + + E+E +++ I + ++ I + G D A
Sbjct: 241 LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLA 300
Query: 1336 NHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGF-AGLVKEISFGTTKD 1512
H L++ N+ A+R V + IA A G RIV R EL E +G AGL++ G +
Sbjct: 301 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGD--E 358
Query: 1513 KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIAC 1692
I +CK+ +A TI +RG +K I+ E +R+L DA+ V RN++ D ++V GGGA+E+A
Sbjct: 359 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 418
Query: 1693 ALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPAL 1872
A A+++++ +EQ+ RA A ALEVIP L +N G + I+ +T +RA+ +E
Sbjct: 419 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 478
Query: 1873 GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDI 2004
G++ DMK+ + E L K Q A + ++L+ DDI
Sbjct: 479 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDI 522
>ref|NP_001033175.1| T-complex protein 1 subunit alpha [Bos taurus].
Length = 556
Score = 244 bits (623), Expect = 2e-64
Identities = 165/521 (31%), Positives = 274/521 (52%), Gaps = 17/521 (3%)
Frame = +1
Query: 499 EALKS-HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 675
EA++S ++MAA ++AN +K+SLGP GLDKM+VD GDVT+TNDGATIL +++V+H AK+
Sbjct: 15 EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 74
Query: 676 MVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDK 855
+ EL+ QD E+GD +L+ + IHP + GY A + A+ +
Sbjct: 75 LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRY--- 131
Query: 856 ISDSVLV--DMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRD---VD 1020
IS+++++ D + LI AKT++ SKV+ A + V+AVL + R
Sbjct: 132 ISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYP 191
Query: 1021 FELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHK 1200
I V G ++ LI G ++ MPK++ +AKIA L + K K +
Sbjct: 192 VNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQ 251
Query: 1201 LDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWV 1380
+ +T E +++ E + +E I++I TGAN+ + G DD ++ AVR V
Sbjct: 252 VVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRV 311
Query: 1381 GGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKE----ISFGTTKDKMLVIEQCKNSR 1548
+++ IA A+G ++ + L E+ A ++ + + D++++I+ K
Sbjct: 312 LKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKART 371
Query: 1549 AVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKCP 1728
+ ++ +RG N + +E +RSLHDALCV++ ++ VV GGGA E A ++ + A
Sbjct: 372 SASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMG 431
Query: 1729 TLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRA-RQVKEMNPA------LGIDCL 1887
+ EQ A+ FA +L VIP LA N+ + + ++RA ++NP +G+D +
Sbjct: 432 SREQLAIAEFARSLPVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLV 491
Query: 1888 HKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRK 2010
+ D KQ V E I K + + AT+ IL+ DD+ K
Sbjct: 492 NGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532
>ref|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus].
Length = 535
Score = 241 bits (615), Expect = 2e-63
Identities = 162/504 (32%), Positives = 263/504 (52%), Gaps = 4/504 (0%)
Frame = +1
Query: 511 SHIMAAKAVANTMKTSLGPNGLDKMMVD--KDGDVTVTNDGATILSMMDVDHQIAKLMVE 684
S + A A+ + +K++LGP G+DK+++ +D + VTNDGATIL + VD+ AK++V+
Sbjct: 27 SSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVD 86
Query: 685 LSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHL-DKIS 861
+S+ QDDE+GD L+ + IHP I G+ +A + A + L +
Sbjct: 87 MSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAV 146
Query: 862 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVE 1041
D ++K + L+ A TTL SK++ ++AV AVL + + + E I V
Sbjct: 147 DHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVI 202
Query: 1042 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT-KHKLDVTSV 1218
K+GG L D+ L +G ++DK Q PK++E+AKI I + K K ++ V S
Sbjct: 203 KKLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDST 261
Query: 1219 EDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIE 1398
++ EKEK +E + +I + G N I + + L + A+ +E
Sbjct: 262 AKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVE 321
Query: 1399 LIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGN 1578
+A+ TGG I F KLG L++E+ G +DK++ A TI +RG
Sbjct: 322 RLALVTGGEIASTFDHPELVKLGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGAT 379
Query: 1579 KMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKCPTLEQYAMRAF 1758
+ I++EA+RSLHDALCV+ ++D+R VYGGG +E+ A AV+Q A + P E AM ++
Sbjct: 380 QQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESY 439
Query: 1759 ADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLI 1938
A AL ++P +A+N+G + + ++RA E G+D DM + E+
Sbjct: 440 AKALRMLPTIIADNAGYDSADLVAQLRAAH-SEGKTTAGLDMKEGTIGDMSVLGITESFQ 498
Query: 1939 GKKQQISLATQMVRMILKNDDIRK 2010
K+Q + A + +IL+ D+I K
Sbjct: 499 VKRQVLLSAAEAAEVILRVDNIIK 522
>ref|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus].
Length = 543
Score = 228 bits (580), Expect = 2e-59
Identities = 147/530 (27%), Positives = 274/530 (51%), Gaps = 5/530 (0%)
Frame = +1
Query: 448 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 627
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 62
Query: 628 ATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIA 807
ATIL ++DV H AK +V+++KSQD E+GD ++ G+HP I
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 808 DGYEQAARIAIEHLDKISDSVLVD--MKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 981
+ A ++A+ + +I+ +V + ++ + L + A T L SK+++ A++ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 982 VLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 1152
V+ + D+ + ++I ++ GG LE+++L+ GV K FS+ PK+ + IA
Sbjct: 183 VMMLDDL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIA 238
Query: 1153 ILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDE 1332
+L E K ++ V +VEDY+A+ E + + +I +GA + + + D
Sbjct: 239 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDV 298
Query: 1333 ANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKD 1512
A ++ V +++ +A GG I + L+ + LG + +E G +
Sbjct: 299 ATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIG--GE 356
Query: 1513 KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIAC 1692
+ C ++ TI +RGG + +EE +RSLHDA+ ++R I+++ VV GGGA E+
Sbjct: 357 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 416
Query: 1693 ALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPAL 1872
+ + + P +Q + A+A ALE+IP L +N+G + + ++RAR +
Sbjct: 417 SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA-QGGMWY 475
Query: 1873 GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKS 2022
G+D + D + V E + + ++ A++ +I+ D+ K +S
Sbjct: 476 GVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 525
>ref|NP_001029714.1| T-complex protein 1 subunit zeta [Bos taurus].
Length = 531
Score = 227 bits (579), Expect = 3e-59
Identities = 159/519 (30%), Positives = 263/519 (50%), Gaps = 12/519 (2%)
Frame = +1
Query: 502 ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMV 681
AL +I AA+ + + ++T+LGP G KM+V GD+ +T DG +L M + H A L+
Sbjct: 19 ALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIA 78
Query: 682 ELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKIS 861
+++ +QDD GD + G+HP I +G+E A A++ L+++
Sbjct: 79 KVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVK 138
Query: 862 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVL-TVADMQRRDVDFELIKV 1038
S +D E LI A+T+L +KV H ++A++ AV+ ++ ++++D +L V
Sbjct: 139 VSKEMDR---ETLIDVARTSLRTKV----HAELADVLTEAVVDSILAIKKQDEPIDLFMV 191
Query: 1039 E-GKVGGRLE-DTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVT 1212
E ++ + E DT LI+G+++D HP M K+VEDA I E K +
Sbjct: 192 EIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYK 251
Query: 1213 SVEDYKALQKYEKEKFEEMIRQIKETGANLA---------ICQWGFDDEANHLLLQNNLP 1365
S E+ + L K E++ E+ +++I E + I Q G D + L + +
Sbjct: 252 SAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGII 311
Query: 1366 AVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNS 1545
A+R +E + +A GG + +L P+ LG AGLV E + G ++K IE+C N
Sbjct: 312 ALRRAKRRNMERLTLACGGIALNSLDDLNPDCLGHAGLVYEYTLG--EEKFTFIEKCNNP 369
Query: 1546 RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKC 1725
R+VT+ I+G NK + + K ++ D L ++N I D VV G GA E+A A A+ +
Sbjct: 370 RSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSV 429
Query: 1726 PTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTND 1905
Q ++AFADAL +IP LA+NSG + +T+ +V+A E +G+D
Sbjct: 430 KGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEH-SESGQLVGVDLNTGEPMV 488
Query: 1906 MKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKS 2022
+ + + KKQ + T + IL D+I + G S
Sbjct: 489 AAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMS 527
>ref|NP_001029814.1| T-complex protein 1 subunit zeta-2 [Bos taurus].
Length = 531
Score = 214 bits (545), Expect = 2e-55
Identities = 161/519 (31%), Positives = 262/519 (50%), Gaps = 12/519 (2%)
Frame = +1
Query: 502 ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMV 681
AL +I AA+ + + ++T+LGP G KM+V GDV +T DG +L M + H A L+
Sbjct: 19 ALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDVKLTKDGNVLLHEMQIQHPTASLIA 78
Query: 682 ELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKIS 861
+++ +QDD GD + G+HP IA+G+E A A+E L+++
Sbjct: 79 KVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEIAKIKALEVLEQVK 138
Query: 862 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVL-TVADMQRRDVDFELIKV 1038
+ +MK E + A+T+L +KV H Q+A++ AV+ +V ++R + +L V
Sbjct: 139 --IKKEMK-REIHLDVARTSLQTKV----HPQLADVLTEAVVDSVLAIRRPNYPIDLFMV 191
Query: 1039 E-GKVGGRLE-DTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVT 1212
E ++ + E DTKLIKG+++D HP M K+V+DA I E K +
Sbjct: 192 EIMEMKHKSETDTKLIKGLVLDHGARHPDMKKRVDDAFILTCNVSLEYEKTEVSSGFFYK 251
Query: 1213 SVEDYKALQKYEKEKFEEMIRQI---------KETGANLAICQWGFDDEANHLLLQNNLP 1365
+ E+ + L K E++ E+ +++I + + I Q G D + L ++ +
Sbjct: 252 TAEEKEKLVKAERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDALAKHGIL 311
Query: 1366 AVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNS 1545
A+R +E +++A GG V +L+ + LG AGLV E + G ++K IE C N
Sbjct: 312 ALRRAKRRNMERLSLACGGVAVNSVEDLSVDCLGHAGLVYEYTLG--EEKYTFIEDCINP 369
Query: 1546 RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKC 1725
R+VT+ ++G NK + + K ++ D L I+N I D VV G GA E+ A A+
Sbjct: 370 RSVTLLVKGPNKHTLTQIKDAVRDGLRAIKNAIEDGCVVPGAGAVEVVIAEALVTYKHTI 429
Query: 1726 PTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTND 1905
+ ++AFADAL +IP LA+NSG + +T+ +V+A P +GID
Sbjct: 430 QGRARLGVQAFADALLIIPKVLAQNSGYDLQETLVKVQAEHSNSKQP-VGIDLNTGEPMV 488
Query: 1906 MKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKS 2022
V + KKQ + T + IL D+I + G S
Sbjct: 489 AADAGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMS 527
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,223,535
Number of extensions: 1752605
Number of successful extensions: 6566
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 6512
Number of HSP's successfully gapped: 19
Length of query: 678
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 569
Effective length of database: 14,074,782
Effective search space: 8008550958
Effective search space used: 8008550958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012548
(2034 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsil... 864 0.0
Alignment gi|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta... 316 3e-86
Alignment gi|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma... 270 3e-72
Alignment gi|XP_003355175.1| PREDICTED: t-complex protein 1 subunit gamma... 247 2e-65
Alignment gi|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrof... 246 4e-65
Alignment gi|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa]. 244 2e-64
Alignment gi|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa]. 229 6e-60
Alignment gi|XP_001926412.3| PREDICTED: t-complex protein 1 subunit gamma... 228 1e-59
Alignment gi|XP_003124509.2| PREDICTED: t-complex protein 1 subunit zeta-... 227 2e-59
Alignment gi|XP_003358949.1| PREDICTED: t-complex protein 1 subunit theta... 213 2e-55
>ref|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsilon, partial [Sus scrofa].
Length = 487
Score = 864 bits (2233), Expect = 0.0
Identities = 452/506 (89%), Positives = 455/506 (89%)
Frame = +1
Query: 511 SHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELS 690
SHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELS
Sbjct: 1 SHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELS 60
Query: 691 KSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSV 870
KSQDDEIGD QLLDRGIHPIRIADGYEQAARIAIEHLD
Sbjct: 61 KSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDXX---- 116
Query: 871 LVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKV 1050
TTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKV
Sbjct: 117 ---------------TTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKV 161
Query: 1051 GGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYK 1230
GGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYK
Sbjct: 162 GGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYK 221
Query: 1231 ALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAI 1410
ALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAI
Sbjct: 222 ALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAI 281
Query: 1411 ATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMII 1590
ATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMII
Sbjct: 282 ATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMII 341
Query: 1591 EEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKCPTLEQYAMRAFADAL 1770
EEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADK ++ AL
Sbjct: 342 EEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKVKRGDRXXXXXXXXAL 401
Query: 1771 EVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQ 1950
EVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQ
Sbjct: 402 EVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQ 461
Query: 1951 QISLATQMVRMILKNDDIRKPGKSEE 2028
QISLATQMVRMILK DDIRKPG+SEE
Sbjct: 462 QISLATQMVRMILKIDDIRKPGESEE 487
>ref|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta-like [Sus scrofa].
Length = 539
Score = 316 bits (810), Expect = 3e-86
Identities = 193/528 (36%), Positives = 308/528 (58%), Gaps = 7/528 (1%)
Frame = +1
Query: 442 GRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTN 621
GR +D+D+ +++ S+I AAKAVA+ ++TSLGP G+DKM+ D GDVT+TN
Sbjct: 18 GRGKSAYQDRDKPAQIRF-----SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITN 72
Query: 622 DGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIR 801
DGATIL M V H A+++VELSK+QD E GD +LL +GIHP
Sbjct: 73 DGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTI 132
Query: 802 IADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 981
I++ +++A IE L +S V ++ D + L+ +A T+L SKVV+ ++ ++VNA
Sbjct: 133 ISESFQKALEKGIEILTDMSRPV--ELSDRDTLLNSATTSLNSKVVSQYSSLLSPMSVNA 190
Query: 982 VLTVAD-MQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAIL 1158
V+ V D VD IK+ K+GG ++D +L++G+++ + ++ + + VE AKI ++
Sbjct: 191 VMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLI 249
Query: 1159 TCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGF----- 1323
PK +++ V+ + + E+ +++QIK+TG N+ + Q
Sbjct: 250 QFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDAL 309
Query: 1324 DDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGT 1503
D A H L + + V+ + +IE I G + V + T + LG A L +E++
Sbjct: 310 SDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNG 369
Query: 1504 TKDKMLVIEQCKN-SRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAA 1680
+ KML I C + + VTI +RG NK++IEEA+RS+HDALCVIR L++ ++ GGGA
Sbjct: 370 S-GKMLKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAP 428
Query: 1681 EIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEM 1860
EI AL +++ + +E Y +RAFADA+EVIP LAEN+G+NPI T+TE+R R +
Sbjct: 429 EIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHA-QG 487
Query: 1861 NPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDI 2004
GI+ G +++ ++ V++ L+ ++LAT+ VR ILK DD+
Sbjct: 488 EKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDV 535
>ref|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma isoform 2 [Sus scrofa].
Length = 545
Score = 270 bits (689), Expect = 3e-72
Identities = 166/524 (31%), Positives = 289/524 (55%), Gaps = 4/524 (0%)
Frame = +1
Query: 445 RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 624
RP L++ ++ G + +I AAK +A+ ++T LGP + KM++D G + +TND
Sbjct: 5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 62
Query: 625 GATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRI 804
G IL + V H AK M+E+S++QD+E+GD L++ +HP +
Sbjct: 63 GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 122
Query: 805 ADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 984
Y +A I L KIS V D + + ++ +++ +KV++ IA++AV
Sbjct: 123 ISAYRKALDDMISTLKKISTPV--DTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 180
Query: 985 LTVA--DMQRRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 1155
TV + R+++D + +VE GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 181 KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240
Query: 1156 LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEA 1335
L E K +++ +++T ED+ + + E+E +++ I ++ I + G D A
Sbjct: 241 LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 300
Query: 1336 NHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGF-AGLVKEISFGTTKD 1512
H L++ N+ A+R V + IA A G RIV R EL E +G AGL++ G +
Sbjct: 301 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGD--E 358
Query: 1513 KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIAC 1692
I +CK+ +A TI +RG +K I+ E +R+L DA+ V RN++ D ++V GGGA+E+A
Sbjct: 359 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 418
Query: 1693 ALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPAL 1872
A A+++++ +EQ+ RA A ALEVIP L +N G + I+ +T +RA+ +E
Sbjct: 419 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 478
Query: 1873 GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDI 2004
G++ DMK+ + E L K Q A + ++L+ DDI
Sbjct: 479 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDI 522
>ref|XP_003355175.1| PREDICTED: t-complex protein 1 subunit gamma isoform 3 [Sus scrofa].
Length = 500
Score = 247 bits (631), Expect = 2e-65
Identities = 153/479 (31%), Positives = 265/479 (55%), Gaps = 4/479 (0%)
Frame = +1
Query: 580 KMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXX 759
KM++D G + +TNDG IL + V H AK M+E+S++QD+E+GD
Sbjct: 3 KMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLS 62
Query: 760 XXXQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVV 939
L++ +HP + Y +A I L KIS V D + + ++ +++ +KV+
Sbjct: 63 VAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPV--DTNNRDMMLNIINSSITTKVI 120
Query: 940 NSCHRQMAEIAVNAVLTVA--DMQRRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDFS 1110
+ IA++AV TV + R+++D + +VE GG +ED+ +++GV+++KD +
Sbjct: 121 SRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVT 180
Query: 1111 HPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKET 1290
HP+M + +++ +I +L E K +++ +++T ED+ + + E+E +++ I
Sbjct: 181 HPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHL 240
Query: 1291 GANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGF 1470
++ I + G D A H L++ N+ A+R V + IA A G RIV R EL E +G
Sbjct: 241 KPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGT 300
Query: 1471 -AGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIR 1647
AGL++ G + I +CK+ +A TI +RG +K I+ E +R+L DA+ V RN++
Sbjct: 301 GAGLLEIKKIGD--EYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLL 358
Query: 1648 DNRVVYGGGAAEIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTM 1827
D ++V GGGA+E+A A A+++++ +EQ+ RA A ALEVIP L +N G + I+ +
Sbjct: 359 DPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLL 418
Query: 1828 TEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDI 2004
T +RA+ +E G++ DMK+ + E L K Q A + ++L+ DDI
Sbjct: 419 TSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDI 477
>ref|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrofa].
Length = 556
Score = 246 bits (627), Expect = 4e-65
Identities = 166/524 (31%), Positives = 276/524 (52%), Gaps = 20/524 (3%)
Frame = +1
Query: 499 EALKS-HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 675
EA++S ++MAA ++AN +K+SLGP GLDKM+VD GDVT+TNDGATIL +++V+H AK+
Sbjct: 15 EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 74
Query: 676 MVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDK 855
+ EL+ QD E+GD +L+ + IHP + GY A + A+ +
Sbjct: 75 LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRY--- 131
Query: 856 ISDSVLV--DMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDV---- 1017
IS+++++ D + LI AKT++ SK++ A + V+AVL + R
Sbjct: 132 ISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYP 191
Query: 1018 --DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 1191
++K G+ ++ LI G ++ MPK++ +AKIA L + K K
Sbjct: 192 VNSINILKAHGR---SQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 248
Query: 1192 KHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAV 1371
++ +T E +++ E + +E I++I TGAN+ + G DD ++ AV
Sbjct: 249 GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAV 308
Query: 1372 RWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKE----ISFGTTKDKMLVIEQCK 1539
R V +++ IA A+G I+ + L E+ A ++ + + D++++I+ K
Sbjct: 309 RRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTK 368
Query: 1540 NSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEAD 1719
+ +I +RG N + +E +RSLHDALCV+R ++ VV GGGA E A ++ + A
Sbjct: 369 ARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYAT 428
Query: 1720 KCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRA-RQVKEMNPA------LGI 1878
+ EQ A+ FA +L VIP LA N+ + + ++RA ++NP +G+
Sbjct: 429 SMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGL 488
Query: 1879 DCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRK 2010
D ++ D KQ V E I K + + AT+ IL+ DD+ K
Sbjct: 489 DLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532
>ref|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa].
Length = 535
Score = 244 bits (622), Expect = 2e-64
Identities = 163/504 (32%), Positives = 265/504 (52%), Gaps = 4/504 (0%)
Frame = +1
Query: 511 SHIMAAKAVANTMKTSLGPNGLDKMMVD--KDGDVTVTNDGATILSMMDVDHQIAKLMVE 684
S + A A+ + +K++LGP G+DK+++ +D + VTNDGATIL + VD+ AK++V+
Sbjct: 27 SSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVD 86
Query: 685 LSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHL-DKIS 861
+S+ QDDE+GD L+ + IHP I G+ +A + A + L +
Sbjct: 87 MSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAV 146
Query: 862 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVE 1041
D ++K + L+ A TTL SK++ ++AV AVL + + + E I V
Sbjct: 147 DHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVI 202
Query: 1042 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT-KHKLDVTSV 1218
K+GG L D+ L +G ++DK Q PK++E+AKI I + K K ++ V S
Sbjct: 203 KKLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDST 261
Query: 1219 EDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIE 1398
++ EKEK +E + +I + G N I + + L + A+ +E
Sbjct: 262 AKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVE 321
Query: 1399 LIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGN 1578
+A+ TGG I F KLG L++E+ G +DK++ A TI +RG
Sbjct: 322 RLALVTGGEIASTFDHPELVKLGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGAT 379
Query: 1579 KMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKCPTLEQYAMRAF 1758
+ I++EA+RSLHDALCV+ ++D+R VYGGG +E+ A AV+Q A++ P E AM ++
Sbjct: 380 QQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESY 439
Query: 1759 ADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLI 1938
A AL ++P +A+N+G + + ++RA E N G+D DM + E+
Sbjct: 440 AKALRMLPTIIADNAGYDSADLVAQLRAAH-SEGNTTAGLDMKEGTIGDMAVLGITESFQ 498
Query: 1939 GKKQQISLATQMVRMILKNDDIRK 2010
K+Q + A + +IL+ D+I K
Sbjct: 499 VKRQVLLSAAEAAEVILRVDNIIK 522
>ref|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa].
Length = 543
Score = 229 bits (583), Expect = 6e-60
Identities = 147/530 (27%), Positives = 275/530 (51%), Gaps = 5/530 (0%)
Frame = +1
Query: 448 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 627
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 62
Query: 628 ATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIA 807
ATIL ++DV H AK +V+++KSQD E+GD ++ G+HP I
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 808 DGYEQAARIAIEHLDKISDSVLVD--MKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 981
+ A ++A+ + +I+ +V + ++ + L + A T L SK+++ A++ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 982 VLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 1152
V+ + D+ + ++I ++ GG LE+++L+ GV K FS+ PK+ + IA
Sbjct: 183 VMMLDDL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIA 238
Query: 1153 ILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDE 1332
+L E K ++ V +VEDY+A+ E + + +I +GA + + + D
Sbjct: 239 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDV 298
Query: 1333 ANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKD 1512
A ++ V +++ +A GG I + L+ + LG + +E G +
Sbjct: 299 ATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIG--GE 356
Query: 1513 KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIAC 1692
+ C ++ TI +RGG + +EE +RSLHDA+ ++R I+++ VV GGGA E+
Sbjct: 357 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 416
Query: 1693 ALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPAL 1872
+ + + P +Q + A+A ALE+IP L +N+G + + ++RAR +
Sbjct: 417 SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA-QGGTWY 475
Query: 1873 GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKS 2022
G+D ++ D + V E + + ++ A++ +I+ D+ K +S
Sbjct: 476 GVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 525
>ref|XP_001926412.3| PREDICTED: t-complex protein 1 subunit gamma isoform 1 [Sus scrofa].
Length = 507
Score = 228 bits (581), Expect = 1e-59
Identities = 143/457 (31%), Positives = 251/457 (54%), Gaps = 4/457 (0%)
Frame = +1
Query: 646 MDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQA 825
+ V H AK M+E+S++QD+E+GD L++ +HP + Y +A
Sbjct: 32 IQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKA 91
Query: 826 ARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVA--D 999
I L KIS V D + + ++ +++ +KV++ IA++AV TV +
Sbjct: 92 LDDMISTLKKISTPV--DTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEE 149
Query: 1000 MQRRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEP 1176
R+++D + +VE GG +ED+ +++GV+++KD +HP+M + +++ +I +L E
Sbjct: 150 NGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEY 209
Query: 1177 PKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQN 1356
K +++ +++T ED+ + + E+E +++ I ++ I + G D A H L++
Sbjct: 210 KKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQHYLMRA 269
Query: 1357 NLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGF-AGLVKEISFGTTKDKMLVIEQ 1533
N+ A+R V + IA A G RIV R EL E +G AGL++ G + I +
Sbjct: 270 NITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGD--EYFTFITE 327
Query: 1534 CKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQE 1713
CK+ +A TI +RG +K I+ E +R+L DA+ V RN++ D ++V GGGA+E+A A A++++
Sbjct: 328 CKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEK 387
Query: 1714 ADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHK 1893
+ +EQ+ RA A ALEVIP L +N G + I+ +T +RA+ +E G++
Sbjct: 388 SKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETG 447
Query: 1894 GTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDI 2004
DMK+ + E L K Q A + ++L+ DDI
Sbjct: 448 TLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDI 484
>ref|XP_003124509.2| PREDICTED: t-complex protein 1 subunit zeta-like isoform 1 [Sus
scrofa].
Length = 531
Score = 227 bits (578), Expect = 2e-59
Identities = 159/519 (30%), Positives = 263/519 (50%), Gaps = 12/519 (2%)
Frame = +1
Query: 502 ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMV 681
AL +I AA+ + + ++T+LGP G KM+V GD+ +T DG +L M + H A L+
Sbjct: 19 ALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIA 78
Query: 682 ELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKIS 861
+++ +QDD GD + G+HP I +G+E A A++ L+++
Sbjct: 79 KVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVK 138
Query: 862 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVL-TVADMQRRDVDFELIKV 1038
S +D E LI A+T+L +KV H ++A++ AV+ +V ++++D +L V
Sbjct: 139 VSKEMDR---ETLIDVARTSLRTKV----HAELADVLTEAVVDSVLAIKKQDEPIDLFMV 191
Query: 1039 E-GKVGGRLE-DTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVT 1212
E ++ + E DT LI+G+++D HP M K+VEDA I E K +
Sbjct: 192 EIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYK 251
Query: 1213 SVEDYKALQKYEKEKFEEMIRQIKETGANLA---------ICQWGFDDEANHLLLQNNLP 1365
S E+ + L + E++ E+ +++I E + I Q G D + L + +
Sbjct: 252 SAEEREKLVRAERKFIEDRVKKIVELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIV 311
Query: 1366 AVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNS 1545
A+R +E + +A GG + +L P+ LG AGLV E + G ++K IE+C N
Sbjct: 312 ALRRAKRRNMERLTLACGGVALNSLDDLNPDCLGHAGLVYEYTLG--EEKFTFIEKCNNP 369
Query: 1546 RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKC 1725
R+VT+ I+G NK + + K ++ D L ++N I D VV G GA E+A A A+ +
Sbjct: 370 RSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALIKYKPSV 429
Query: 1726 PTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTND 1905
Q ++AFADAL +IP LA+NSG + +T+ +V+A E +G+D
Sbjct: 430 KGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEH-SESGQLVGVDLNTGEPMV 488
Query: 1906 MKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKS 2022
+ + + KKQ + T + IL D+I + G S
Sbjct: 489 AAEVGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMS 527
>ref|XP_003358949.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 3 [Sus
scrofa].
Length = 529
Score = 213 bits (543), Expect = 2e-55
Identities = 151/504 (29%), Positives = 250/504 (49%), Gaps = 2/504 (0%)
Frame = +1
Query: 499 EALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 678
EA+ +I A K +A T +T+ GPNG++KM+++ + VTND ATIL ++V H AK++
Sbjct: 8 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 67
Query: 679 VELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKI 858
V S Q+ E+GD +LL G+ + +GYE A R A E L +
Sbjct: 68 VMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPDL 127
Query: 859 SDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKV 1038
+++D + + T++ SK + IA V D +VD I+V
Sbjct: 128 VCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVDN--IRV 185
Query: 1039 EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSV 1218
+G + + ++ G++ K+ V+DAKIA+ +CPF+ +TK + + +
Sbjct: 186 CKILGSGVHSSSVLHGMVFKKETEGDVT--SVKDAKIAVYSCPFDGMITETKGTVLIKTA 243
Query: 1219 EDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIE 1398
E+ K E+ E ++ I +TGAN+ + D A H + N+ VR ++
Sbjct: 244 EELMNFSKGEENLMEAQVKAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLR 303
Query: 1399 LIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAV-TIFIRGG 1575
+ G +PR + E++G V G T+ ++V + K A+ TI +RG
Sbjct: 304 RLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQ--VVVFKHEKEDGAISTIVLRGS 361
Query: 1576 NKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKCPTLEQYAMRA 1755
++++ +R++ D + + L RD R+V GGGA EI A ++ + CP LEQYA++
Sbjct: 362 TDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKK 421
Query: 1756 FADALEVIPMALAENSGMNPIQTMTEVRA-RQVKEMNPALGIDCLHKGTNDMKQQHVIET 1932
FA+A E IP ALAENSG+ + ++++ A Q N L I+ DM + V++T
Sbjct: 422 FAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDT 481
Query: 1933 LIGKKQQISLATQMVRMILKNDDI 2004
+GK I LAT +L+ D I
Sbjct: 482 YLGKYWAIKLATNAAVTVLRVDQI 505
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,912,938
Number of extensions: 1125421
Number of successful extensions: 4182
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4120
Number of HSP's successfully gapped: 19
Length of query: 678
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 572
Effective length of database: 8,704,850
Effective search space: 4979174200
Effective search space used: 4979174200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012548
(2034 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031663.1| T-complex protein 1 subunit epsilon [Mus muscul... 976 0.0
Alignment gi|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus]. 315 1e-85
Alignment gi|NP_001229994.1| T-complex protein 1 subunit gamma [Mus muscu... 269 7e-72
Alignment gi|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus]. 269 7e-72
Alignment gi|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus]. 240 3e-63
Alignment gi|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus]. 239 5e-63
Alignment gi|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus]. 234 2e-61
Alignment gi|NP_033968.1| T-complex protein 1 subunit zeta [Mus musculus]. 229 6e-60
Alignment gi|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculu... 218 1e-56
Alignment gi|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus]. 212 1e-54
>ref|NP_031663.1| T-complex protein 1 subunit epsilon [Mus musculus].
Length = 541
Score = 976 bits (2522), Expect = 0.0
Identities = 497/541 (91%), Positives = 514/541 (95%)
Frame = +1
Query: 406 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 585
MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTM+TSLGPNGLDKM
Sbjct: 1 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKM 60
Query: 586 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXX 765
MVDKDGDVT+TNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD
Sbjct: 61 MVDKDGDVTITNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA 120
Query: 766 XQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNS 945
QLLDRGIHPIRIADGYEQAARIAI+HLDKISD VLVD+ + EPLIQTAKTTLGSKV+NS
Sbjct: 121 EQLLDRGIHPIRIADGYEQAARIAIQHLDKISDKVLVDINNPEPLIQTAKTTLGSKVINS 180
Query: 946 CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 1125
CHRQMAEIAVNAVLTVADM+RRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
Sbjct: 181 CHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 240
Query: 1126 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLA 1305
K+V DAKIAILTCPFEPPKPKTKHKLDV SVEDYKALQKYEKEKFEEMI+QIKETGANLA
Sbjct: 241 KKVVDAKIAILTCPFEPPKPKTKHKLDVMSVEDYKALQKYEKEKFEEMIKQIKETGANLA 300
Query: 1306 ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVK 1485
ICQWGFDDEANHLLLQN LPAVRWVGGPEIELIAIATGGRIVPRFSELT EKLGFAG+V+
Sbjct: 301 ICQWGFDDEANHLLLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVVQ 360
Query: 1486 EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY 1665
EISFGTTKDKMLVIE+CKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY
Sbjct: 361 EISFGTTKDKMLVIEKCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY 420
Query: 1666 GGGAAEIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRAR 1845
GGGAAEI+CALAVSQEADKCPTLEQYAMRAFADALEVIPMAL+ENSGMNPIQTMTEVRAR
Sbjct: 421 GGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRAR 480
Query: 1846 QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKSE 2025
QVKE NPALGIDCLHKG+NDM+ QHVIETLIGKKQQISLATQMVRMILK DDIRKPG+SE
Sbjct: 481 QVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESE 540
Query: 2026 E 2028
E
Sbjct: 541 E 541
>ref|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus].
Length = 539
Score = 315 bits (806), Expect = 1e-85
Identities = 189/505 (37%), Positives = 296/505 (58%), Gaps = 7/505 (1%)
Frame = +1
Query: 511 SHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELS 690
S+I AAKAVA+ ++TSLGP G+DKM+ D GDVT+TNDGATIL M V H A+++VELS
Sbjct: 36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELS 95
Query: 691 KSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSV 870
K+QD E GD +LL +GIHP I++ +++A +E L +S V
Sbjct: 96 KAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPV 155
Query: 871 LVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVAD-MQRRDVDFELIKVEGK 1047
+ D E L+ +A T+L SKVV+ ++ ++VNAV+ V D VD IK+ K
Sbjct: 156 --QLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKK 213
Query: 1048 VGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDY 1227
+GG ++D +L++G+++ + ++ + + VE AKI ++ PK +++ V+
Sbjct: 214 LGGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQM 272
Query: 1228 KALQKYEKEKFEEMIRQIKETGANLAICQWGF-----DDEANHLLLQNNLPAVRWVGGPE 1392
+ + E+ +++QIK+TG N+ + Q D A H L + + V+ V +
Sbjct: 273 DRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDVERED 332
Query: 1393 IELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKN-SRAVTIFIR 1569
IE I G + V + T + LG A L +E+S + K+ I C + + VTI +R
Sbjct: 333 IEFICKTIGTKPVAHIDQFTADMLGSAELAEEVSLNGS-GKLFKITGCTSPGKTVTIVVR 391
Query: 1570 GGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKCPTLEQYAM 1749
G NK++IEEA+RS+HDALCVIR L++ ++ GGGA EI AL +++ + +E Y +
Sbjct: 392 GSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCV 451
Query: 1750 RAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIE 1929
RAFADA+EVIP LAEN+G+NPI T+TE+R R + GI+ G +++ ++ V++
Sbjct: 452 RAFADAMEVIPSTLAENAGLNPISTVTELRNRHA-QGEKTTGINVRKGGISNILEEMVVQ 510
Query: 1930 TLIGKKQQISLATQMVRMILKNDDI 2004
L+ ++LAT+ VR ILK DD+
Sbjct: 511 PLLVSVSALTLATETVRSILKIDDV 535
>ref|NP_001229994.1| T-complex protein 1 subunit gamma [Mus musculus].
Length = 545
Score = 269 bits (687), Expect = 7e-72
Identities = 166/524 (31%), Positives = 288/524 (54%), Gaps = 4/524 (0%)
Frame = +1
Query: 445 RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 624
RP L++ ++ G + +I AAK +A+ ++T LGP + KM++D G + +TND
Sbjct: 5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 62
Query: 625 GATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRI 804
G IL + V H AK M+E+S++QD+E+GD L++ +HP +
Sbjct: 63 GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 122
Query: 805 ADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 984
Y A I L KIS V D+ + E ++ +++ +KV++ IA++AV
Sbjct: 123 ISAYRMALDDMISTLKKISTPV--DVNNREMMLSIINSSITTKVISRWSSLACNIALDAV 180
Query: 985 LTVA--DMQRRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 1155
TV + R+++D + +VE GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 181 KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240
Query: 1156 LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEA 1335
L E K +++ +++T ED+ + + E+E ++ I + ++ I + G D A
Sbjct: 241 LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLA 300
Query: 1336 NHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGF-AGLVKEISFGTTKD 1512
H L++ N+ A+R V + IA A G RIV R EL + +G AGL++ G +
Sbjct: 301 QHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGD--E 358
Query: 1513 KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIAC 1692
I CK+ +A TI +RG +K I+ E +R+L DA+ V RN++ D ++V GGGA+E+A
Sbjct: 359 YFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 418
Query: 1693 ALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPAL 1872
A A+++++ +EQ+ RA A ALEVIP L +N G + I+ +T +RA+ +E
Sbjct: 419 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCETW 478
Query: 1873 GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDI 2004
G++ DMK+ + E L K Q A + ++L+ DDI
Sbjct: 479 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDI 522
>ref|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus].
Length = 545
Score = 269 bits (687), Expect = 7e-72
Identities = 166/524 (31%), Positives = 288/524 (54%), Gaps = 4/524 (0%)
Frame = +1
Query: 445 RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 624
RP L++ ++ G + +I AAK +A+ ++T LGP + KM++D G + +TND
Sbjct: 5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 62
Query: 625 GATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRI 804
G IL + V H AK M+E+S++QD+E+GD L++ +HP +
Sbjct: 63 GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 122
Query: 805 ADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 984
Y A I L KIS V D+ + E ++ +++ +KV++ IA++AV
Sbjct: 123 ISAYRMALDDMISTLKKISTPV--DVNNREMMLSIINSSITTKVISRWSSLACNIALDAV 180
Query: 985 LTVA--DMQRRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 1155
TV + R+++D + +VE GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 181 KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240
Query: 1156 LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEA 1335
L E K +++ +++T ED+ + + E+E ++ I + ++ I + G D A
Sbjct: 241 LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLA 300
Query: 1336 NHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGF-AGLVKEISFGTTKD 1512
H L++ N+ A+R V + IA A G RIV R EL + +G AGL++ G +
Sbjct: 301 QHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGD--E 358
Query: 1513 KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIAC 1692
I CK+ +A TI +RG +K I+ E +R+L DA+ V RN++ D ++V GGGA+E+A
Sbjct: 359 YFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 418
Query: 1693 ALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPAL 1872
A A+++++ +EQ+ RA A ALEVIP L +N G + I+ +T +RA+ +E
Sbjct: 419 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCETW 478
Query: 1873 GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDI 2004
G++ DMK+ + E L K Q A + ++L+ DDI
Sbjct: 479 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDI 522
>ref|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus].
Length = 556
Score = 240 bits (613), Expect = 3e-63
Identities = 165/522 (31%), Positives = 275/522 (52%), Gaps = 18/522 (3%)
Frame = +1
Query: 499 EALKS-HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 675
EA++S ++MAA ++AN +K+S GP GLDKM+VD GDVT+TNDGATIL +++V+H AK+
Sbjct: 15 EAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 74
Query: 676 MVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDK 855
+ EL+ QD E+GD +L+ + IHP + GY A + A+ ++++
Sbjct: 75 LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINE 134
Query: 856 ISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDV------ 1017
+ + D + LI AKT++ SK++ A + V+AVL V R
Sbjct: 135 -NLIINTDELGRDCLINAAKTSMSSKIIGINGDYFANMVVDAVLAVKYTDARGQPRYPVN 193
Query: 1018 DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKH 1197
++K G+ ++E + LI G ++ MPK++ +AKIA L + K K
Sbjct: 194 SVNILKAHGR--SQIE-SMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGV 250
Query: 1198 KLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRW 1377
++ +T E +++ E + +E I++I TGAN+ + G DD ++ AVR
Sbjct: 251 QVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMYLKYFVEAGAMAVRR 310
Query: 1378 VGGPEIELIAIATGGRIVPRFSELTPE---KLGFAGLVKE-ISFGTTKDKMLVIEQCKNS 1545
V +++ +A A+G I+ + L E ++ G +E + D++++I+ K
Sbjct: 311 VLKRDLKHVAKASGASILSTLANLEGEETFEVTMLGQAEEVVQERICDDELILIKNTKAR 370
Query: 1546 RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKC 1725
+ +I +RG N + +E +RSLHDALCV++ ++ VV GGGA E A ++ + A
Sbjct: 371 TSASIILRGANDFMCDEMERSLHDALCVVKRVLELKSVVPGGGAVEAALSIYLENYATSM 430
Query: 1726 PTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRA-RQVKEMNPA------LGIDC 1884
+ EQ A+ FA +L VIP LA N+ + + ++RA ++NP +G+D
Sbjct: 431 GSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDL 490
Query: 1885 LHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRK 2010
+H D KQ V E I K + + AT+ IL+ DD+ K
Sbjct: 491 VHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532
>ref|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus].
Length = 535
Score = 239 bits (611), Expect = 5e-63
Identities = 163/504 (32%), Positives = 262/504 (51%), Gaps = 4/504 (0%)
Frame = +1
Query: 511 SHIMAAKAVANTMKTSLGPNGLDKMMVD--KDGDVTVTNDGATILSMMDVDHQIAKLMVE 684
S + A A+ + +K++LGP G+DK+++ +D + VTNDGATIL + VD+ AK++V+
Sbjct: 27 SSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAALMVTNDGATILKNIGVDNPAAKVLVD 86
Query: 685 LSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHL-DKIS 861
+S+ QDDE+GD L+ + IHP I G+ +A + A E L
Sbjct: 87 MSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIISGWREATKAAREALLSSAV 146
Query: 862 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVE 1041
D + + + L+ A TTL SK++ ++AV AVL + + + E I V
Sbjct: 147 DHGSDEARFWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVI 202
Query: 1042 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT-KHKLDVTSV 1218
K+GG L D+ L +G ++DK Q PK++E+AKI I + K K ++ V S
Sbjct: 203 KKLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDST 261
Query: 1219 EDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIE 1398
++ EKEK +E + +I + G N I + + L + A+ +E
Sbjct: 262 AKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVE 321
Query: 1399 LIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGN 1578
+A+ TGG I F KLG L++E+ G +DK++ A TI +RG
Sbjct: 322 RLALVTGGEIASTFDHPELVKLGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGAT 379
Query: 1579 KMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKCPTLEQYAMRAF 1758
+ I++EA+RSLHDALCV+ ++D R VYGGG +E+ A AV+Q A++ P E AM +F
Sbjct: 380 QQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESF 439
Query: 1759 ADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLI 1938
A AL ++P +A+N+G + + ++RA E + G+D DM + E+
Sbjct: 440 AKALRMLPTIIADNAGYDSADLVAQLRAAH-SEGHITAGLDMKEGTIGDMAVLGITESFQ 498
Query: 1939 GKKQQISLATQMVRMILKNDDIRK 2010
K+Q + A + +IL+ D+I K
Sbjct: 499 VKRQVLLSAAEAAEVILRVDNIIK 522
>ref|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus].
Length = 544
Score = 234 bits (597), Expect = 2e-61
Identities = 149/530 (28%), Positives = 277/530 (52%), Gaps = 5/530 (0%)
Frame = +1
Query: 448 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 627
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 62
Query: 628 ATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIA 807
ATIL ++DV H AK +V+++KSQD E+GD ++ G+HP I
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 808 DGYEQAARIAIEHLDKISDSVLVD--MKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNA 981
+ A ++A+ + +I+ +V ++ + L + A T L SK+++ A++ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDA 182
Query: 982 VLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 1152
V+ + ++ + ++I ++ GG LE+++L+ GV K FS+ PK+ ++ KIA
Sbjct: 183 VMMLDEL----LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIA 238
Query: 1153 ILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDE 1332
+L E K ++ V +VEDY+A+ E + + +I ++GA + + + D
Sbjct: 239 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHQSGAKVILSKLPIGDV 298
Query: 1333 ANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKD 1512
A ++ V +++ +A GG I + L P+ LG + +E G +
Sbjct: 299 ATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALVPDVLGHCQVFEETQIG--GE 356
Query: 1513 KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIAC 1692
+ C ++ TI +RGG + +EE +RSLHDA+ ++R I+++ VV GGGA E+
Sbjct: 357 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 416
Query: 1693 ALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPAL 1872
+ + + P +Q + A+A ALE+IP L +N+G + + ++RAR +
Sbjct: 417 SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA-QGGMWY 475
Query: 1873 GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKS 2022
G+D ++ D Q V E + + ++ A++ +I+ D+ K +S
Sbjct: 476 GVDINNENIADNFQAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 525
>ref|NP_033968.1| T-complex protein 1 subunit zeta [Mus musculus].
Length = 531
Score = 229 bits (584), Expect = 6e-60
Identities = 159/519 (30%), Positives = 264/519 (50%), Gaps = 12/519 (2%)
Frame = +1
Query: 502 ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMV 681
AL +I AA+ + + ++T+LGP G KM+V GD+ +T DG +L M + H A L+
Sbjct: 19 ALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIA 78
Query: 682 ELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKIS 861
+++ +QDD GD + G+HP I +G+E A A++ L+++
Sbjct: 79 KVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVK 138
Query: 862 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVL-TVADMQRRDVDFELIKV 1038
S +D E LI A+T+L +KV H ++A++ AV+ ++ ++++D +L V
Sbjct: 139 VSKEMDR---ETLIDVARTSLRTKV----HAELADVLTEAVVDSILAIRKKDEPIDLFMV 191
Query: 1039 E-GKVGGRLE-DTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVT 1212
E ++ + E DT LI+G+++D HP M K+VE+A I E K +
Sbjct: 192 EIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVENAYILTCNVSLEYEKTEVNSGFFYK 251
Query: 1213 SVEDYKALQKYEKEKFEEMIRQIKETGANLA---------ICQWGFDDEANHLLLQNNLP 1365
S E+ + L K E++ E+ +++I E + I Q G D + L + +
Sbjct: 252 SAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIV 311
Query: 1366 AVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNS 1545
A+R +E + +A GG + F +L P+ LG AGLV E + G ++K IE+C N
Sbjct: 312 ALRRAKRRNMERLTLACGGIALNSFDDLNPDCLGHAGLVYEYTLG--EEKFTFIEKCNNP 369
Query: 1546 RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKC 1725
R+VT+ ++G NK + + K ++ D L ++N I D VV G GA E+A A A+ +
Sbjct: 370 RSVTLLVKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVALAEALIKYKPSV 429
Query: 1726 PTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTND 1905
Q ++AFADAL +IP LA+NSG + +T+ +V+A E +G+D
Sbjct: 430 KGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEH-SESGQLVGVDLSTGEPMV 488
Query: 1906 MKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKS 2022
+ V + KKQ + T + IL D+I + G S
Sbjct: 489 AAEMGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMS 527
>ref|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculus].
Length = 531
Score = 218 bits (555), Expect = 1e-56
Identities = 160/519 (30%), Positives = 263/519 (50%), Gaps = 12/519 (2%)
Frame = +1
Query: 502 ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMV 681
AL +I AA+ + + ++ +LGP G KM+V GD+ +T DG +L M + H A ++
Sbjct: 19 ALAVNICAARGLQDVLRPTLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASIIA 78
Query: 682 ELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKIS 861
+++ +QD GD + G+HP I +G++ A A+E LD+I
Sbjct: 79 KVAAAQDHVTGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFDVAKTKALEVLDEIK 138
Query: 862 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVL-TVADMQRRDVDFELIKV 1038
V +MK E L+ A+T+L +KV H ++A+I AV+ +V ++R V +L V
Sbjct: 139 --VQKEMK-REILLDVARTSLQTKV----HAELADILTEAVVDSVLAIRRPGVPIDLFMV 191
Query: 1039 E-GKVGGRLE-DTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVT 1212
E ++ + E DT+LI+G+++D HP+M KQV DA I E K +
Sbjct: 192 EIVEMRHKSETDTQLIRGLVLDHGARHPRMRKQVRDAYILTCNVSLEYEKTEVSSGFFYK 251
Query: 1213 SVEDYKALQKYEKEKFEEMIRQI---------KETGANLAICQWGFDDEANHLLLQNNLP 1365
+VE+ + L K E++ E+ +++I + + I Q G D + +L ++N+
Sbjct: 252 TVEEKEKLVKAERKFIEDRVQKIIDLKQKVCAESNKGFVVINQKGIDPVSLEMLAKHNIV 311
Query: 1366 AVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNS 1545
A+R +E + +A GG V F L+ E LG AGLV E + G ++K IE C N
Sbjct: 312 ALRRAKRRNLERLTLACGGLAVNSFEGLSEECLGHAGLVFEYALG--EEKFTFIEDCVNP 369
Query: 1546 RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKC 1725
+VT+ ++G NK + + K +L D L ++N I D VV G GA E+A A A+ +
Sbjct: 370 LSVTLLVKGPNKHTLIQIKDALRDGLRAVKNAIEDGCVVPGAGAVEVAIAEALVNYKHRV 429
Query: 1726 PTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTND 1905
+ ++AFADAL +IP LA+NSG + +T+ +++ + E LGID
Sbjct: 430 QGRVRLGIQAFADALLIIPKVLAQNSGYDLQETLIKIQTKHA-ESKELLGIDLNTGEPMA 488
Query: 1906 MKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKS 2022
+ + + KK + T + IL D+I + G S
Sbjct: 489 AAEAGIWDNYCVKKHLLHSCTVIATNILLVDEIMRAGMS 527
>ref|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus].
Length = 548
Score = 212 bits (539), Expect = 1e-54
Identities = 150/515 (29%), Positives = 254/515 (49%), Gaps = 3/515 (0%)
Frame = +1
Query: 469 QDRKSRLMGLE-ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSM 645
+D GLE A+ +I A K +A T +T+ GPNG++KM++++ + VTND ATIL
Sbjct: 16 KDGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINRLEKLFVTNDAATILRE 75
Query: 646 MDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQA 825
++V H AK++V S Q+ E+GD +LL G+ + GYE A
Sbjct: 76 LEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVISGYEIA 135
Query: 826 ARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQ 1005
+ A E L ++ +++D + + +T++ SK S IA V D
Sbjct: 136 CKKAHEILPELVCCSAKNLRDVDEVSSLLRTSIMSKQYGSETFLAKLIAQACVSIFPDSG 195
Query: 1006 RRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKP 1185
+VD I+V +G + + ++ G++ K+ V+DAKIA+ +CPF+
Sbjct: 196 NFNVDN--IRVCKILGSGIYSSSVLHGMVFKKETEGDVT--SVKDAKIAVYSCPFDGMIT 251
Query: 1186 KTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLP 1365
+TK + + + E+ K E+ + ++ I TGAN+ + D A H + N+
Sbjct: 252 ETKGTVLIKTAEELMNFSKGEENLMDAQVKAIAGTGANVIVTGGKVADIALHYANKYNIM 311
Query: 1366 AVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNS 1545
VR ++ + G +P+ + E++G V G T+ ++V + K
Sbjct: 312 LVRLNSKWDLRRLCKTVGATALPKLTPPVQEEMGHCDSVYLSEVGDTQ--VVVFKHEKED 369
Query: 1546 RAV-TIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADK 1722
A+ TI +RG ++++ +R++ D + + L RD R+V GGGA EI A ++ +
Sbjct: 370 GAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGET 429
Query: 1723 CPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEV-RARQVKEMNPALGIDCLHKGT 1899
CP LEQYA++ FA+A E IP ALAENSG+ + ++++ Q N L I+
Sbjct: 430 CPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYSVHQEGNKNVGLDIEAEVPAV 489
Query: 1900 NDMKQQHVIETLIGKKQQISLATQMVRMILKNDDI 2004
DM + +++T +GK I LAT +L+ D I
Sbjct: 490 KDMLEASILDTYLGKYWAIKLATNAAVTVLRVDQI 524
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 59,349,796
Number of extensions: 1489314
Number of successful extensions: 5475
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 5424
Number of HSP's successfully gapped: 11
Length of query: 678
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 570
Effective length of database: 12,373,671
Effective search space: 7052992470
Effective search space used: 7052992470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012548
(2034 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapie... 1001 0.0
Alignment gi|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens]. 318 2e-86
Alignment gi|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Ho... 268 1e-71
Alignment gi|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Hom... 243 6e-64
Alignment gi|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Ho... 239 5e-63
Alignment gi|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo... 231 2e-60
Alignment gi|NP_001753.1| T-complex protein 1 subunit zeta isoform a [Hom... 229 6e-60
Alignment gi|NP_001185771.1| T-complex protein 1 subunit beta isoform 2 [... 227 3e-59
Alignment gi|NP_001008800.1| T-complex protein 1 subunit gamma isoform c ... 227 4e-59
Alignment gi|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [H... 226 5e-59
>ref|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapiens].
Length = 541
Score = 1001 bits (2588), Expect = 0.0
Identities = 511/541 (94%), Positives = 522/541 (96%)
Frame = +1
Query: 406 MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKM 585
MAS+GTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTM+TSLGPNGLDKM
Sbjct: 1 MASMGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKM 60
Query: 586 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXX 765
MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD
Sbjct: 61 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA 120
Query: 766 XQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNS 945
QLLDRGIHPIRIADGYEQAAR+AIEHLDKISDSVLVD+KDTEPLIQTAKTTLGSKVVNS
Sbjct: 121 EQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNS 180
Query: 946 CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 1125
CHRQMAEIAVNAVLTVADM+RRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
Sbjct: 181 CHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 240
Query: 1126 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLA 1305
K+VEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMI+QIKETGANLA
Sbjct: 241 KKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLA 300
Query: 1306 ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVK 1485
ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELT EKLGFAGLV+
Sbjct: 301 ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQ 360
Query: 1486 EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY 1665
EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY
Sbjct: 361 EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY 420
Query: 1666 GGGAAEIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRAR 1845
GGGAAEI+CALAVSQEADKCPTLEQYAMRAFADALEVIPMAL+ENSGMNPIQTMTEVRAR
Sbjct: 421 GGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRAR 480
Query: 1846 QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKSE 2025
QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILK DDIRKPG+SE
Sbjct: 481 QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESE 540
Query: 2026 E 2028
E
Sbjct: 541 E 541
>ref|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens].
Length = 539
Score = 318 bits (814), Expect = 2e-86
Identities = 190/505 (37%), Positives = 299/505 (59%), Gaps = 7/505 (1%)
Frame = +1
Query: 511 SHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELS 690
S+I AAKAVA+ ++TSLGP G+DKM+ D GDVT+TNDGATIL M V H A+++VELS
Sbjct: 36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELS 95
Query: 691 KSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSV 870
K+QD E GD +LL +GIHP I++ +++A IE L +S V
Sbjct: 96 KAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPV 155
Query: 871 LVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVAD-MQRRDVDFELIKVEGK 1047
++ D E L+ +A T+L SKVV+ ++ ++VNAV+ V D VD IK+ K
Sbjct: 156 --ELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKK 213
Query: 1048 VGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDY 1227
+GG ++D +L++G+++ + S+ + + VE AKI ++ PK +++ V+
Sbjct: 214 LGGTIDDCELVEGLVLTQKVSNSGITR-VEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQM 272
Query: 1228 KALQKYEKEKFEEMIRQIKETGANLAICQWGF-----DDEANHLLLQNNLPAVRWVGGPE 1392
+ + E+ +++QIK+TG N+ + Q D A H L + + ++ + +
Sbjct: 273 DRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDIERED 332
Query: 1393 IELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKN-SRAVTIFIR 1569
IE I G + V + T + LG A L +E++ + K+L I C + + VTI +R
Sbjct: 333 IEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGS-GKLLKITGCASPGKTVTIVVR 391
Query: 1570 GGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKCPTLEQYAM 1749
G NK++IEEA+RS+HDALCVIR L++ ++ GGGA EI AL +++ + +E Y +
Sbjct: 392 GSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCV 451
Query: 1750 RAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIE 1929
RAFADA+EVIP LAEN+G+NPI T+TE+R R + A GI+ G +++ ++ V++
Sbjct: 452 RAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTA-GINVRKGGISNILEELVVQ 510
Query: 1930 TLIGKKQQISLATQMVRMILKNDDI 2004
L+ ++LAT+ VR ILK DD+
Sbjct: 511 PLLVSVSALTLATETVRSILKIDDV 535
>ref|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Homo sapiens].
Length = 545
Score = 268 bits (686), Expect = 1e-71
Identities = 164/524 (31%), Positives = 290/524 (55%), Gaps = 4/524 (0%)
Frame = +1
Query: 445 RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 624
RP L++ ++ G + +I AAK +A+ ++T LGP + KM++D G + +TND
Sbjct: 5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 62
Query: 625 GATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRI 804
G IL + V H AK M+E+S++QD+E+GD L++ +HP +
Sbjct: 63 GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 122
Query: 805 ADGYEQAARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 984
Y +A I L KIS + VD+ D++ ++ +++ +K ++ IA++AV
Sbjct: 123 ISAYRKALDDMISTLKKIS--IPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDAV 180
Query: 985 LTVA--DMQRRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 1155
V + R+++D + +VE GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 181 KMVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240
Query: 1156 LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEA 1335
L E K +++ +++T ED+ + + E+E +++ I + ++ I + G D A
Sbjct: 241 LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLA 300
Query: 1336 NHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGF-AGLVKEISFGTTKD 1512
H L++ N+ A+R V + IA A G RIV R EL + +G AGL++ G +
Sbjct: 301 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGD--E 358
Query: 1513 KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIAC 1692
I CK+ +A TI +RG +K I+ E +R+L DA+ V RN++ D ++V GGGA+E+A
Sbjct: 359 YFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 418
Query: 1693 ALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPAL 1872
A A+++++ +EQ+ RA A ALEVIP L +N G + I+ +T +RA+ +E
Sbjct: 419 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 478
Query: 1873 GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDI 2004
G++ DMK+ + E L K Q A + ++L+ DDI
Sbjct: 479 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDI 522
>ref|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Homo sapiens].
Length = 535
Score = 243 bits (619), Expect = 6e-64
Identities = 162/501 (32%), Positives = 263/501 (52%), Gaps = 4/501 (0%)
Frame = +1
Query: 520 MAAKAVANTMKTSLGPNGLDKMMVD--KDGDVTVTNDGATILSMMDVDHQIAKLMVELSK 693
+ A A+ + +K++LGP G+DK+++ +D + VTNDGATIL + VD+ AK++V++S+
Sbjct: 30 IGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSR 89
Query: 694 SQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHL-DKISDSV 870
QDDE+GD L+ + IHP I G+ +A + A E L D
Sbjct: 90 VQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSAVDHG 149
Query: 871 LVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKV 1050
++K + L+ A TTL SK++ ++AV AVL + + + E I + K+
Sbjct: 150 SDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHIIKKL 205
Query: 1051 GGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT-KHKLDVTSVEDY 1227
GG L D+ L +G ++DK Q PK++E+AKI I + K K ++ V S
Sbjct: 206 GGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKV 264
Query: 1228 KALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIA 1407
++ EKEK +E + +I + G N I + + L + A+ +E +A
Sbjct: 265 AEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLA 324
Query: 1408 IATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMI 1587
+ TGG I F KLG L++E+ G +DK++ A TI +RG + I
Sbjct: 325 LVTGGEIASTFDHPELVKLGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGATQQI 382
Query: 1588 IEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKCPTLEQYAMRAFADA 1767
++EA+RSLHDALCV+ ++D+R VYGGG +E+ A AV+Q A++ P E AM ++A A
Sbjct: 383 LDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKA 442
Query: 1768 LEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKK 1947
L ++P +A+N+G + + ++RA E N G+D DM + E+ K+
Sbjct: 443 LRMLPTIIADNAGYDSADLVAQLRAAH-SEGNTTAGLDMREGTIGDMAILGITESFQVKR 501
Query: 1948 QQISLATQMVRMILKNDDIRK 2010
Q + A + +IL+ D+I K
Sbjct: 502 QVLLSAAEAAEVILRVDNIIK 522
>ref|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Homo sapiens].
Length = 556
Score = 239 bits (611), Expect = 5e-63
Identities = 163/522 (31%), Positives = 272/522 (52%), Gaps = 18/522 (3%)
Frame = +1
Query: 499 EALKS-HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 675
E ++S ++MAA ++AN +K+SLGP GLDKM+VD GDVT+TNDGATIL +++V+H AK+
Sbjct: 15 ETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 74
Query: 676 MVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDK 855
+ EL+ QD E+GD +L+ + IHP + GY A + A+ ++++
Sbjct: 75 LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINE 134
Query: 856 ISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDV------ 1017
+ V D + LI AKT++ SK++ A + V+AVL + R
Sbjct: 135 -NLIVNTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVN 193
Query: 1018 DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKH 1197
++K G+ ++ LI G ++ MPK++ +AKIA L + K K
Sbjct: 194 SVNILKAHGR---SQMESMLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGV 250
Query: 1198 KLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRW 1377
++ +T E +++ E + +E I++I TGAN+ + G DD ++ AVR
Sbjct: 251 QVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRR 310
Query: 1378 VGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKE----ISFGTTKDKMLVIEQCKNS 1545
V +++ IA A+G I+ + L E+ A ++ + + D++++I+ K
Sbjct: 311 VLKRDLKRIAKASGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKAR 370
Query: 1546 RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKC 1725
+ +I +RG N + +E +RSLHDALCV++ ++ VV GGGA E A ++ + A
Sbjct: 371 TSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSM 430
Query: 1726 PTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRA-RQVKEMNPA------LGIDC 1884
+ EQ A+ FA +L VIP LA N+ + + ++RA ++NP +G+D
Sbjct: 431 GSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDL 490
Query: 1885 LHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRK 2010
+ D KQ V E I K + + AT+ IL+ DD+ K
Sbjct: 491 SNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532
>ref|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo sapiens].
Length = 543
Score = 231 bits (589), Expect = 2e-60
Identities = 149/530 (28%), Positives = 274/530 (51%), Gaps = 5/530 (0%)
Frame = +1
Query: 448 PFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDG 627
P +++K+ S+ G+ L S+I A + +A ++T+LGP G+DK++VD G T++NDG
Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDG 62
Query: 628 ATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIA 807
ATIL ++DV H AK +V+++KSQD E+GD ++ G+HP I
Sbjct: 63 ATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIII 122
Query: 808 DGYEQAARIAIEHLDKISDSV-LVDMKDTEPLIQ-TAKTTLGSKVVNSCHRQMAEIAVNA 981
+ A ++A+ + +I+ +V D + L++ A T L SK+++ A++ V+A
Sbjct: 123 RAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDA 182
Query: 982 VLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKQVEDAKIA 1152
V+ + D+ + ++I ++ GG LED++L+ GV K FS+ PK+ + KIA
Sbjct: 183 VMMLDDL----LQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIA 238
Query: 1153 ILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDE 1332
+L E K ++ V +VEDY+A+ E + + +I +GA + + + D
Sbjct: 239 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDV 298
Query: 1333 ANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKD 1512
A ++ V +++ +A GG I + L+ + LG + +E G +
Sbjct: 299 ATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIG--GE 356
Query: 1513 KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIAC 1692
+ C ++ T +RGG + +EE +RSLHDA+ ++R I+++ VV GGGA E+
Sbjct: 357 RYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 416
Query: 1693 ALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPAL 1872
+ + + P +Q + A+A ALE+IP L +N+G + + ++RAR +
Sbjct: 417 SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA-QGGTWY 475
Query: 1873 GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKS 2022
G+D ++ D + V E + + ++ A++ +I+ D+ K +S
Sbjct: 476 GVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 525
>ref|NP_001753.1| T-complex protein 1 subunit zeta isoform a [Homo sapiens].
Length = 531
Score = 229 bits (585), Expect = 6e-60
Identities = 158/519 (30%), Positives = 263/519 (50%), Gaps = 12/519 (2%)
Frame = +1
Query: 502 ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMV 681
AL +I AA+ + + ++T+LGP G KM+V GD+ +T DG +L M + H A L+
Sbjct: 19 ALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIA 78
Query: 682 ELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKIS 861
+++ +QDD GD + G+HP I +G+E A A++ L+++
Sbjct: 79 KVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEVK 138
Query: 862 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVL-TVADMQRRD--VDFELI 1032
S +D E LI A+T+L +KV H ++A++ AV+ ++ ++++D +D +I
Sbjct: 139 VSREMDR---ETLIDVARTSLRTKV----HAELADVLTEAVVDSILAIKKQDEPIDLFMI 191
Query: 1033 KVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVT 1212
++ DT LI+G+++D HP M K+VEDA I E K +
Sbjct: 192 EIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYK 251
Query: 1213 SVEDYKALQKYEKEKFEEMIRQIKETGANLA---------ICQWGFDDEANHLLLQNNLP 1365
S E+ + L K E++ E+ +++I E + I Q G D + L + +
Sbjct: 252 SAEEREKLVKAERKFIEDRVKKIIELKRKVCGDSDKGFVVINQKGIDPFSLDALSKEGIV 311
Query: 1366 AVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNS 1545
A+R +E + +A GG + F +L+P+ LG AGLV E + G ++K IE+C N
Sbjct: 312 ALRRAKRRNMERLTLACGGVALNSFDDLSPDCLGHAGLVYEYTLG--EEKFTFIEKCNNP 369
Query: 1546 RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKC 1725
R+VT+ I+G NK + + K ++ D L ++N I D VV G GA E+A A A+ +
Sbjct: 370 RSVTLLIKGPNKHTLTQIKDAVRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALIKHKPSV 429
Query: 1726 PTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTND 1905
Q ++AFADAL +IP LA+NSG + +T+ +++A E +G+D
Sbjct: 430 KGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKIQAEH-SESGQLVGVDLNTGEPMV 488
Query: 1906 MKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKS 2022
+ V + KKQ + T + IL D+I + G S
Sbjct: 489 AAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMS 527
>ref|NP_001185771.1| T-complex protein 1 subunit beta isoform 2 [Homo sapiens].
Length = 488
Score = 227 bits (579), Expect = 3e-59
Identities = 155/483 (32%), Positives = 250/483 (51%), Gaps = 4/483 (0%)
Frame = +1
Query: 574 LDKMMVD--KDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXX 747
+DK+++ +D + VTNDGATIL + VD+ AK++V++S+ QDDE+GD
Sbjct: 1 MDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAA 60
Query: 748 XXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHL-DKISDSVLVDMKDTEPLIQTAKTTL 924
L+ + IHP I G+ +A + A E L D ++K + L+ A TTL
Sbjct: 61 ELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTL 120
Query: 925 GSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKD 1104
SK++ ++AV AVL + + + E I + K+GG L D+ L +G ++DK
Sbjct: 121 SSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHIIKKLGGSLADSYLDEGFLLDKK 176
Query: 1105 FSHPQMPKQVEDAKIAILTCPFEPPKPKT-KHKLDVTSVEDYKALQKYEKEKFEEMIRQI 1281
Q PK++E+AKI I + K K ++ V S ++ EKEK +E + +I
Sbjct: 177 IGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERI 235
Query: 1282 KETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEK 1461
+ G N I + + L + A+ +E +A+ TGG I F K
Sbjct: 236 LKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVK 295
Query: 1462 LGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNL 1641
LG L++E+ G +DK++ A TI +RG + I++EA+RSLHDALCV+
Sbjct: 296 LGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQT 353
Query: 1642 IRDNRVVYGGGAAEIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQ 1821
++D+R VYGGG +E+ A AV+Q A++ P E AM ++A AL ++P +A+N+G +
Sbjct: 354 VKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSAD 413
Query: 1822 TMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDD 2001
+ ++RA E N G+D DM + E+ K+Q + A + +IL+ D+
Sbjct: 414 LVAQLRAAH-SEGNTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDN 472
Query: 2002 IRK 2010
I K
Sbjct: 473 IIK 475
>ref|NP_001008800.1| T-complex protein 1 subunit gamma isoform c [Homo sapiens].
Length = 507
Score = 227 bits (578), Expect = 4e-59
Identities = 141/457 (30%), Positives = 252/457 (55%), Gaps = 4/457 (0%)
Frame = +1
Query: 646 MDVDHQIAKLMVELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQA 825
+ V H AK M+E+S++QD+E+GD L++ +HP + Y +A
Sbjct: 32 IQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKA 91
Query: 826 ARIAIEHLDKISDSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVA--D 999
I L KIS + VD+ D++ ++ +++ +K ++ IA++AV V +
Sbjct: 92 LDDMISTLKKIS--IPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDAVKMVQFEE 149
Query: 1000 MQRRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEP 1176
R+++D + +VE GG +ED+ +++GV+++KD +HP+M + +++ +I +L E
Sbjct: 150 NGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEY 209
Query: 1177 PKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQN 1356
K +++ +++T ED+ + + E+E +++ I + ++ I + G D A H L++
Sbjct: 210 KKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRA 269
Query: 1357 NLPAVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGF-AGLVKEISFGTTKDKMLVIEQ 1533
N+ A+R V + IA A G RIV R EL + +G AGL++ G + I
Sbjct: 270 NITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGD--EYFTFITD 327
Query: 1534 CKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQE 1713
CK+ +A TI +RG +K I+ E +R+L DA+ V RN++ D ++V GGGA+E+A A A++++
Sbjct: 328 CKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEK 387
Query: 1714 ADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHK 1893
+ +EQ+ RA A ALEVIP L +N G + I+ +T +RA+ +E G++
Sbjct: 388 SKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETG 447
Query: 1894 GTNDMKQQHVIETLIGKKQQISLATQMVRMILKNDDI 2004
DMK+ + E L K Q A + ++L+ DDI
Sbjct: 448 TLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDI 484
>ref|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [Homo sapiens].
Length = 530
Score = 226 bits (577), Expect = 5e-59
Identities = 161/519 (31%), Positives = 266/519 (51%), Gaps = 12/519 (2%)
Frame = +1
Query: 502 ALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMV 681
AL +I AA+ + + ++T+LGP G KM+V GD+ +T DG +L M + H A L+
Sbjct: 19 ALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLDEMQIQHPTASLIA 78
Query: 682 ELSKSQDDEIGDXXXXXXXXXXXXXXXXXQLLDRGIHPIRIADGYEQAARIAIEHLDKIS 861
+++ +QDD GD + G+HP IA+G+E A A+E L+++
Sbjct: 79 KVATAQDDVTGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAKIKALEVLEEVK 138
Query: 862 DSVLVDMKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDF---ELI 1032
V +MK + L+ A+T+L +KV + E+ V++VL V +D E++
Sbjct: 139 --VTKEMK-RKILLDVARTSLQTKVHAELADVLTEVVVDSVLAVR-RPGYPIDLFMVEIM 194
Query: 1033 KVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVT 1212
+++ K+G DTKLI+G+++D HP M K+VEDA I I E K +
Sbjct: 195 EMKHKLG---TDTKLIQGLVLDHGARHPDMKKRVEDAFILICNVSLEYEKTEVNSGFFYK 251
Query: 1213 SVEDYKALQKYEKEKFEEMIRQI---------KETGANLAICQWGFDDEANHLLLQNNLP 1365
+ E+ + L K E++ E+ +++I + + I Q G D + L ++ +
Sbjct: 252 TAEEKEKLVKAERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDSLAKHGIV 311
Query: 1366 AVRWVGGPEIELIAIATGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNS 1545
A+R +E +++A GG V F +LT + LG AGLV E + G ++K IE+C N
Sbjct: 312 ALRRAKRRNMERLSLACGGMAVNSFEDLTVDCLGHAGLVYEYTLG--EEKFTFIEECVNP 369
Query: 1546 RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKC 1725
+VT+ ++G NK + + K ++ D L I+N I D +V G GA E+A A A+ +
Sbjct: 370 CSVTLLVKGPNKHTLTQVKDAIRDGLRAIKNAIEDGCMVPGAGAIEVAMAEALVTYKNSI 429
Query: 1726 PTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTND 1905
+ ++AFADAL +IP LA+N+G +P +T+ +V+A V E +G+D
Sbjct: 430 KGRARLGVQAFADALLIIPKVLAQNAGYDPQETLVKVQAEHV-ESKQLVGVDLNTGEPMV 488
Query: 1906 MKQQHVIETLIGKKQQISLATQMVRMILKNDDIRKPGKS 2022
V + KKQ + T + IL D+I + G S
Sbjct: 489 AADAGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMS 527
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 70,038,365
Number of extensions: 1781108
Number of successful extensions: 6393
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 6329
Number of HSP's successfully gapped: 20
Length of query: 678
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 569
Effective length of database: 14,704,088
Effective search space: 8366626072
Effective search space used: 8366626072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012548
(2034 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892845.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 394 e-107
gb|GL896487.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 383 e-103
>gb|GL892845.1| Sus scrofa unplaced genomic scaffold chrU_scaffold167
Length = 207
Score = 394 bits (199), Expect = e-107
Identities = 205/207 (99%)
Strand = Plus / Plus
Query: 237 cagaaggtactgtctggcgttaaactagtctcaggtgagaaataagtctcgagcggcctg 296
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 1 cagaaggtactgtctggcgttaaactagtctcaggtgagaaataagtctcgggaggcctg 60
Query: 297 tgctgcgcacgcgcgagctcttggcgccctcccgcgagaggaaagtactctctcggttcc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgctgcgcacgcgcgagctcttggcgccctcccgcgagaggaaagtactctctcggttcc 120
Query: 357 ggagtggacaccgccggttgcgggagagaactcctgctgctgccgcaccatggcgtccgt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggagtggacaccgccggttgcgggagagaactcctgctgctgccgcaccatggcgtccgt 180
Query: 417 ggggaccctcgccttcgacgaatatgg 443
|||||||||||||||||||||||||||
Sbjct: 181 ggggaccctcgccttcgacgaatatgg 207
>gb|GL896487.1| Sus scrofa unplaced genomic scaffold chrU_scaffold822
Length = 12888
Score = 383 bits (193), Expect = e-103
Identities = 193/193 (100%)
Strand = Plus / Minus
Query: 936 ggttaacagctgtcaccgacaaatggccgagattgccgtgaatgccgtcctcaccgtggc 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7363 ggttaacagctgtcaccgacaaatggccgagattgccgtgaatgccgtcctcaccgtggc 7304
Query: 996 cgacatgcagcgcagagacgttgactttgagctcatcaaagtagaaggcaaggtgggcgg 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7303 cgacatgcagcgcagagacgttgactttgagctcatcaaagtagaaggcaaggtgggcgg 7244
Query: 1056 gaggctggaggacaccaagctgatcaagggcgtgatcgtcgacaaggacttcagtcaccc 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7243 gaggctggaggacaccaagctgatcaagggcgtgatcgtcgacaaggacttcagtcaccc 7184
Query: 1116 ccagatgccaaaa 1128
|||||||||||||
Sbjct: 7183 ccagatgccaaaa 7171
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Minus
Query: 1397 agttgatcgccatcgccaccggggggcgcatcgtgccgcggttctcggagctcacgccgg 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3715 agttgatcgccatcgccaccggggggcgcatcgtgccgcggttctcggagctcacgccgg 3656
Query: 1457 agaagctgggcttcgcggggctggtgaaggagatctcgttcgggacgaccaaggacaaga 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3655 agaagctgggcttcgcggggctggtgaaggagatctcgttcgggacgaccaaggacaaga 3596
Query: 1517 tgctggtcatcgagcagtgtaagaactccagagccgtcaccatcttcatcagaggaggaa 1576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3595 tgctggtcatcgagcagtgtaagaactccagagccgtcaccatcttcatcagaggaggaa 3536
Query: 1577 acaagatg 1584
||||||||
Sbjct: 3535 acaagatg 3528
Score = 329 bits (166), Expect = 3e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 571 gggcttgataagatgatggtggataaggatggcgacgtgactgtgaccaatgacggtgcc 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9188 gggcttgataagatgatggtggataaggatggcgacgtgactgtgaccaatgacggtgcc 9129
Query: 631 accattttaagcatgatggacgtggaccatcagatcgccaagctcatggttgaactgtcc 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9128 accattttaagcatgatggacgtggaccatcagatcgccaagctcatggttgaactgtcc 9069
Query: 691 aaatcacaggatgacgagatcggggatggaaccacaggagtggtcg 736
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9068 aaatcacaggatgacgagatcggggatggaaccacaggagtggtcg 9023
Score = 281 bits (142), Expect = 7e-73
Identities = 148/150 (98%)
Strand = Plus / Minus
Query: 1129 caagtggaagatgcaaagattgcgattctcacgtgtccatttgaaccgccgaaaccaaag 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7095 caagtggaagatgcaaagattgcgattctcacgtgtccatttgaaccgccgaaaccaaag 7036
Query: 1189 acaaagcataagctggatgtgacctctgtggaagattacaaagcccttcagaaatacgaa 1248
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 7035 acaaagcataagctggatgtgacctcagtagaagattacaaagcccttcagaaatacgaa 6976
Query: 1249 aaggagaagtttgaggagatgattcggcag 1278
||||||||||||||||||||||||||||||
Sbjct: 6975 aaggagaagtttgaggagatgattcggcag 6946
Score = 276 bits (139), Expect = 5e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 1765 gcgctggaggtcatccccatggccctggccgagaacagcggcatgaaccccatccagacg 1824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2390 gcgctggaggtcatccccatggccctggccgagaacagcggcatgaaccccatccagacg 2331
Query: 1825 atgaccgaggtccgggccagacaggtgaaggagatgaacccggccctcgggattgactgt 1884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2330 atgaccgaggtccgggccagacaggtgaaggagatgaacccggccctcgggattgactgt 2271
Query: 1885 ctgcacaagggcacgaatg 1903
|||||||||||||||||||
Sbjct: 2270 ctgcacaagggcacgaatg 2252
Score = 276 bits (139), Expect = 5e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 1584 gatcatcgaggaggccaagcgatcccttcatgacgctctgtgtgtcatccggaacctcat 1643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2816 gatcatcgaggaggccaagcgatcccttcatgacgctctgtgtgtcatccggaacctcat 2757
Query: 1644 ccgcgacaaccgcgtggtctacggcggcggcgctgctgagatcgcctgcgccctggcggt 1703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2756 ccgcgacaaccgcgtggtctacggcggcggcgctgctgagatcgcctgcgccctggcggt 2697
Query: 1704 cagccaggaggcagacaag 1722
|||||||||||||||||||
Sbjct: 2696 cagccaggaggcagacaag 2678
Score = 244 bits (123), Expect = 2e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 1276 cagattaaggaaactggcgctaacctagctatctgccaatggggatttgacgatgaagca 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4551 cagattaaggaaactggcgctaacctagctatctgccaatggggatttgacgatgaagca 4492
Query: 1336 aatcatttacttcttcagaataacttgcctgcggttcgttgggttggaggccctgaaatc 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4491 aatcatttacttcttcagaataacttgcctgcggttcgttgggttggaggccctgaaatc 4432
Query: 1396 gag 1398
|||
Sbjct: 4431 gag 4429
Score = 238 bits (120), Expect = 1e-59
Identities = 129/132 (97%)
Strand = Plus / Minus
Query: 1903 gatatgaagcaacaacatgtcatagaaaccttgattggcaaaaagcaacagatctccctc 1962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 gatatgaagcaacaacatgtcatagaaaccttgattggcaaaaagcaacagatctccctc 1346
Query: 1963 gcgacacagatggtgagaatgattctgaagaatgatgacatccgtaagcctgggaaatct 2022
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 1345 gcgacacagatggtgagaatgattctgaagattgatgacatccgtaagcctggagaatct 1286
Query: 2023 gaggaatagagc 2034
||||||||||||
Sbjct: 1285 gaggaatagagc 1274
Score = 236 bits (119), Expect = 4e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 736 gtcctggccggtgccctgttggaagaagctgagcagctgctggaccgaggcattcacccg 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8053 gtcctggccggtgccctgttggaagaagctgagcagctgctggaccgaggcattcacccg 7994
Query: 796 atccggattgcagacggctacgagcaggctgcccgcatcgccatcgagcacctggacaa 854
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7993 atccggattgcagacggctacgagcaggctgcccgcatcgccatcgagcacctggacaa 7935
Score = 127 bits (64), Expect = 3e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 509 agtctcacataatggcagcaaaggccgtagcgaatacaatgaaaacatcacttggaccaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10033 agtctcacataatggcagcaaaggccgtagcgaatacaatgaaaacatcacttggaccaa 9974
Query: 569 atgg 572
||||
Sbjct: 9973 atgg 9970
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,439,679
Number of extensions: 217
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 11
Length of query: 2034
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2012
Effective length of database: 2,808,408,574
Effective search space: 5650518050888
Effective search space used: 5650518050888
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)