Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012550
(1636 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531986.2| PREDICTED: similar to Stomatin-like protein 2 (... 520 e-147
Alignment gi|XP_852760.1| PREDICTED: similar to Stomatin-like protein 2 (... 510 e-144
Alignment gi|XP_866264.1| PREDICTED: similar to Stomatin-like protein 2 (... 494 e-140
Alignment gi|XP_866294.1| PREDICTED: similar to Stomatin-like protein 2 (... 473 e-133
Alignment gi|XP_866311.1| PREDICTED: similar to Stomatin-like protein 2 (... 465 e-131
Alignment gi|XP_543126.2| PREDICTED: similar to stomatin-like 3 [Canis fa... 120 3e-27
Alignment gi|NP_001136142.1| erythrocyte band 7 integral membrane protein... 108 2e-23
Alignment gi|XP_547443.2| PREDICTED: similar to Podocin [Canis familiaris]. 82 1e-15
Alignment gi|XP_544765.2| PREDICTED: similar to stomatin (EPB72)-like 1 [... 60 5e-09
>ref|XP_531986.2| PREDICTED: similar to Stomatin-like protein 2 (SLP-2) (EPB72-like 2)
isoform 1 [Canis familiaris].
Length = 356
Score = 520 bits (1339), Expect = e-147
Identities = 278/322 (86%), Positives = 278/322 (86%)
Frame = +2
Query: 209 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 388
NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL
Sbjct: 35 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 94
Query: 389 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 568
DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN
Sbjct: 95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 154
Query: 569 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 748
ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA
Sbjct: 155 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 214
Query: 749 INVAEGKKQAQILASEAEKAEQINQXXXXXXXXXXXXXXXXXXXXXXXXXXTQHNGDAAA 928
INVAEGKKQAQILASEAEKAEQINQ TQHNGDAAA
Sbjct: 215 INVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRILAAALTQHNGDAAA 274
Query: 929 SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPVXXXXXXXXXX 1108
SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPV
Sbjct: 275 SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPVPGAQDSVSSG 334
Query: 1109 XXXXXXXTDASLDEELDRVKLS 1174
TDASLDEE DRVKLS
Sbjct: 335 SSRDVQGTDASLDEEFDRVKLS 356
>ref|XP_852760.1| PREDICTED: similar to Stomatin-like protein 2 (SLP-2) (EPB72-like 2)
isoform 2 [Canis familiaris].
Length = 371
Score = 510 bits (1313), Expect = e-144
Identities = 278/337 (82%), Positives = 278/337 (82%), Gaps = 15/337 (4%)
Frame = +2
Query: 209 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 388
NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL
Sbjct: 35 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 94
Query: 389 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 568
DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN
Sbjct: 95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 154
Query: 569 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQ---------------VEAERR 703
ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQ VEAERR
Sbjct: 155 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVGAREGWGRGLQDAPVEAERR 214
Query: 704 KRATVLESEGTRESAINVAEGKKQAQILASEAEKAEQINQXXXXXXXXXXXXXXXXXXXX 883
KRATVLESEGTRESAINVAEGKKQAQILASEAEKAEQINQ
Sbjct: 215 KRATVLESEGTRESAINVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIR 274
Query: 884 XXXXXXTQHNGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGAL 1063
TQHNGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGAL
Sbjct: 275 ILAAALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGAL 334
Query: 1064 TKAPVXXXXXXXXXXXXXXXXXTDASLDEELDRVKLS 1174
TKAPV TDASLDEE DRVKLS
Sbjct: 335 TKAPVPGAQDSVSSGSSRDVQGTDASLDEEFDRVKLS 371
>ref|XP_866264.1| PREDICTED: similar to Stomatin-like protein 2 (SLP-2) (EPB72-like 2)
isoform 3 [Canis familiaris].
Length = 345
Score = 494 bits (1273), Expect = e-140
Identities = 274/332 (82%), Positives = 274/332 (82%), Gaps = 10/332 (3%)
Frame = +2
Query: 209 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 388
NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL
Sbjct: 35 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 94
Query: 389 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 568
DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN
Sbjct: 95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 154
Query: 569 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 748
ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA
Sbjct: 155 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 214
Query: 749 INVAEGKKQAQILASEAE--------KAEQINQXXXXXXXXXXXXXXXXXXXXXXXXXXT 904
INVAEGKKQAQILASEA KAE I T
Sbjct: 215 INVAEGKKQAQILASEASAVLAKAKAKAEAIR---------------------ILAAALT 253
Query: 905 QH--NGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPV 1078
QH NGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPV
Sbjct: 254 QHVRNGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPV 313
Query: 1079 XXXXXXXXXXXXXXXXXTDASLDEELDRVKLS 1174
TDASLDEE DRVKLS
Sbjct: 314 PGAQDSVSSGSSRDVQGTDASLDEEFDRVKLS 345
>ref|XP_866294.1| PREDICTED: similar to Stomatin-like protein 2 (SLP-2) (EPB72-like 2)
isoform 4 [Canis familiaris].
Length = 338
Score = 473 bits (1218), Expect = e-133
Identities = 260/322 (80%), Positives = 260/322 (80%)
Frame = +2
Query: 209 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 388
NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL
Sbjct: 35 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 94
Query: 389 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 568
DN ASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN
Sbjct: 95 DN------------------ASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 136
Query: 569 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 748
ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA
Sbjct: 137 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 196
Query: 749 INVAEGKKQAQILASEAEKAEQINQXXXXXXXXXXXXXXXXXXXXXXXXXXTQHNGDAAA 928
INVAEGKKQAQILASEAEKAEQINQ TQHNGDAAA
Sbjct: 197 INVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRILAAALTQHNGDAAA 256
Query: 929 SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPVXXXXXXXXXX 1108
SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPV
Sbjct: 257 SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPVPGAQDSVSSG 316
Query: 1109 XXXXXXXTDASLDEELDRVKLS 1174
TDASLDEE DRVKLS
Sbjct: 317 SSRDVQGTDASLDEEFDRVKLS 338
>ref|XP_866311.1| PREDICTED: similar to Stomatin-like protein 2 (SLP-2) (EPB72-like 2)
isoform 5 [Canis familiaris].
Length = 310
Score = 465 bits (1197), Expect = e-131
Identities = 252/299 (84%), Positives = 253/299 (84%)
Frame = +2
Query: 278 ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVTLQIDGVLYLRIMDPYKASY 457
+L GLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVTLQIDGVLYLRIMDPYKASY
Sbjct: 12 LLLRGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVTLQIDGVLYLRIMDPYKASY 71
Query: 458 GVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIVDAINQAADCWGIRCLRYEI 637
GVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIVDAINQAADCWGIRCLRYEI
Sbjct: 72 GVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIVDAINQAADCWGIRCLRYEI 131
Query: 638 KDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVAEGKKQAQILASEAEKAEQI 817
KDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVAEGKKQAQILASEAEKAEQI
Sbjct: 132 KDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVAEGKKQAQILASEAEKAEQI 191
Query: 818 NQXXXXXXXXXXXXXXXXXXXXXXXXXXTQHNGDAAASLTVAEQYVSAFSKLAKDSNTIL 997
NQ TQHNGDAAASLTVAEQYVSAFSKLAKDSNTIL
Sbjct: 192 NQAAGEASAVLAKAKAKAEAIRILAAALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTIL 251
Query: 998 LPSNPGDVTSMVAQAMGVYGALTKAPVXXXXXXXXXXXXXXXXXTDASLDEELDRVKLS 1174
LPSNPGDVTSMVAQAMGVYGALTKAPV TDASLDEE DRVKLS
Sbjct: 252 LPSNPGDVTSMVAQAMGVYGALTKAPVPGAQDSVSSGSSRDVQGTDASLDEEFDRVKLS 310
>ref|XP_543126.2| PREDICTED: similar to stomatin-like 3 [Canis familiaris].
Length = 401
Score = 120 bits (302), Expect = 3e-27
Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 2/199 (1%)
Frame = +2
Query: 227 VPQQEAWVVERMGRFH--RILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVT 400
+ + E VV R+GR + PGL +++P +D V L+ + N+P Q +T D+VT
Sbjct: 164 IKEYERAVVFRLGRIQADKARGPGLILVLPCIDVFVKVD-LRTVTCNIPPQEILTRDSVT 222
Query: 401 LQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIV 580
Q+DGV+Y RI A V D A LAQTT+R+ LG +L ++ RE + SI
Sbjct: 223 TQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQ 282
Query: 581 DAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVA 760
++ A + WGIR R EIKD+ +P +++ SM + EA R RA VL +EG +N +
Sbjct: 283 TLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARARVLAAEG----EMNAS 338
Query: 761 EGKKQAQILASEAEKAEQI 817
+ K A ++ +E+ A Q+
Sbjct: 339 KSLKAASVVLAESPIALQL 357
>ref|NP_001136142.1| erythrocyte band 7 integral membrane protein [Canis lupus
familiaris].
Length = 284
Score = 108 bits (269), Expect = 2e-23
Identities = 61/202 (30%), Positives = 113/202 (55%), Gaps = 2/202 (0%)
Frame = +2
Query: 218 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 391
+ + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 54 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 112
Query: 392 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 571
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++ +RE +
Sbjct: 113 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAH 172
Query: 572 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAI 751
++ ++ A D WGI+ R EIKD+ +P +++ +M + EA R RA V+ +EG +
Sbjct: 173 NMQCTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEG----EM 228
Query: 752 NVAEGKKQAQILASEAEKAEQI 817
N + K+A ++ +E+ A Q+
Sbjct: 229 NASRALKEASMVITESPAALQL 250
>ref|XP_547443.2| PREDICTED: similar to Podocin [Canis familiaris].
Length = 542
Score = 82.0 bits (201), Expect = 1e-15
Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 2/191 (1%)
Frame = +2
Query: 227 VPQQEAWVVERMGRF--HRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVT 400
V + E ++ R+G R PGL P LD V L+ + +P VT D
Sbjct: 287 VREYERVIIFRLGHLLPGRAKGPGLFFFFPCLDTYHKVD-LRLQTLEIPFHEVVTKDMFI 345
Query: 401 LQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIV 580
++ID + Y R+ + + A+ L QTTM+ L SL ++ ER+S+ +
Sbjct: 346 MEIDAICYYRMENASLLLSSLAHVSKAIQFLMQTTMKRLLAHRSLTEILLERKSIAQDLK 405
Query: 581 DAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVA 760
A++ WGI+ R EIKD+ +P ++ S+ ++ EA+R+ + V+ +EG + ++ +
Sbjct: 406 VALDSVTCIWGIKVERTEIKDVRLPAGLQHSLAVEAEAQRQAKVRVIAAEGEKAASEAL- 464
Query: 761 EGKKQAQILAS 793
++ A+ILA+
Sbjct: 465 --RRAAEILAA 473
>ref|XP_544765.2| PREDICTED: similar to stomatin (EPB72)-like 1 [Canis familiaris].
Length = 433
Score = 60.5 bits (145), Expect = 5e-09
Identities = 39/137 (28%), Positives = 61/137 (44%)
Frame = +2
Query: 227 VPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVTLQ 406
VP E +V R+GR PG+ +L+P +D + V L+ NVP + D L
Sbjct: 117 VPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVD-LRTRAFNVPPCKLTSKDGAVLS 175
Query: 407 IDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIVDA 586
+ + RI DP + V+D A AQ M L K L ++ E+ ++ ++
Sbjct: 176 VGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLREIQTEQLKISDQLLLE 235
Query: 587 INQAADCWGIRCLRYEI 637
IN WG+ R E+
Sbjct: 236 INDVTRAWGLEVDRVEL 252
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,082,507
Number of extensions: 1220629
Number of successful extensions: 4212
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4182
Number of HSP's successfully gapped: 9
Length of query: 545
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 437
Effective length of database: 15,274,216
Effective search space: 6674832392
Effective search space used: 6674832392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012550
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012550
(1636 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033157.1| stomatin-like protein 2 [Bos taurus]. 520 e-147
Alignment gi|NP_001074378.1| stomatin-like protein 3 [Bos taurus]. 122 1e-27
Alignment gi|NP_001098943.1| erythrocyte band 7 integral membrane protein... 108 2e-23
Alignment gi|XP_002700962.1| PREDICTED: stomatin-like 3-like [Bos taurus]. 101 2e-21
Alignment gi|XP_001253215.3| PREDICTED: stomatin-like [Bos taurus]. 92 1e-18
Alignment gi|NP_001193036.1| podocin [Bos taurus]. 81 3e-15
Alignment gi|XP_002694208.1| PREDICTED: nephrosis 2, idiopathic, steroid-... 81 3e-15
Alignment gi|NP_001179360.1| stomatin-like protein 1 [Bos taurus]. 59 1e-08
Alignment gi|XP_002696685.1| PREDICTED: stomatin (EPB72)-like 1 [Bos taur... 59 1e-08
>ref|NP_001033157.1| stomatin-like protein 2 [Bos taurus].
Length = 356
Score = 520 bits (1338), Expect = e-147
Identities = 277/322 (86%), Positives = 279/322 (86%)
Frame = +2
Query: 209 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 388
NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL
Sbjct: 35 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 94
Query: 389 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 568
DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN
Sbjct: 95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 154
Query: 569 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 748
ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESM+MQVEAERRKRATVLESEGTRESA
Sbjct: 155 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMKMQVEAERRKRATVLESEGTRESA 214
Query: 749 INVAEGKKQAQILASEAEKAEQINQXXXXXXXXXXXXXXXXXXXXXXXXXXTQHNGDAAA 928
INVAEGKKQAQILASEAEKAEQINQ TQHNGDAAA
Sbjct: 215 INVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRILAAALTQHNGDAAA 274
Query: 929 SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPVXXXXXXXXXX 1108
SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAP+
Sbjct: 275 SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPIPEAQDSVSSR 334
Query: 1109 XXXXXXXTDASLDEELDRVKLS 1174
TDASLDEELDRVKLS
Sbjct: 335 SSRDVRSTDASLDEELDRVKLS 356
>ref|NP_001074378.1| stomatin-like protein 3 [Bos taurus].
Length = 253
Score = 122 bits (305), Expect = 1e-27
Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 2/199 (1%)
Frame = +2
Query: 227 VPQQEAWVVERMGRFH--RILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVT 400
+ + E VV R+GR + PGL +++P +D V L+ I N+P Q +T D+VT
Sbjct: 16 IKEYERAVVFRLGRIQADKAKGPGLILILPCIDVFVKVD-LRTITCNIPPQEILTRDSVT 74
Query: 401 LQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIV 580
Q+DGV+Y RI A V D A LAQTT+R+ LG +L ++ RE + SI
Sbjct: 75 TQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTRTLSQILAGREEIAHSIQ 134
Query: 581 DAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVA 760
++ A + WGIR R EIKD+ +P +++ SM + EA R RA VL +EG +N +
Sbjct: 135 TLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARAKVLAAEG----EMNAS 190
Query: 761 EGKKQAQILASEAEKAEQI 817
+ K A ++ +E+ A Q+
Sbjct: 191 KALKSASMVLAESPAALQL 209
>ref|NP_001098943.1| erythrocyte band 7 integral membrane protein [Bos taurus].
Length = 284
Score = 108 bits (269), Expect = 2e-23
Identities = 61/202 (30%), Positives = 113/202 (55%), Gaps = 2/202 (0%)
Frame = +2
Query: 218 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 391
+ + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 54 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 112
Query: 392 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 571
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++ +RE +
Sbjct: 113 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAH 172
Query: 572 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAI 751
++ ++ A D WGI+ R EIKD+ +P +++ +M + EA R RA V+ +EG +
Sbjct: 173 NMQCTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEG----EM 228
Query: 752 NVAEGKKQAQILASEAEKAEQI 817
N + K+A ++ +E+ A Q+
Sbjct: 229 NASRALKEASMVITESPAALQL 250
>ref|XP_002700962.1| PREDICTED: stomatin-like 3-like [Bos taurus].
Length = 198
Score = 101 bits (252), Expect = 2e-21
Identities = 57/156 (36%), Positives = 87/156 (55%)
Frame = +2
Query: 350 IVINVPEQSAVTLDNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKL 529
++ V +T D+VT Q+DGV+Y RI A V D A LAQTT+R+ LG
Sbjct: 3 VIFRVLALQILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTR 62
Query: 530 SLDKVFRERESLNASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKR 709
+L ++ RE + SI ++ A + WGIR R EIKD+ +P +++ SM + EA R R
Sbjct: 63 TLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREAR 122
Query: 710 ATVLESEGTRESAINVAEGKKQAQILASEAEKAEQI 817
A VL +EG +N ++ K A ++ +E+ A Q+
Sbjct: 123 AKVLAAEG----EMNASKALKSASMVLAESPAALQL 154
>ref|XP_001253215.3| PREDICTED: stomatin-like [Bos taurus].
Length = 184
Score = 92.4 bits (228), Expect = 1e-18
Identities = 48/143 (33%), Positives = 83/143 (58%)
Frame = +2
Query: 290 GLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVTLQIDGVLYLRIMDPYKASYGVED 469
GL ++P D V ++ I ++P Q +T D+VT+ +DGV+Y R+ + A + +
Sbjct: 27 GLFFILPCTDSFIKVD-MRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITN 85
Query: 470 PEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIVDAINQAADCWGIRCLRYEIKDIH 649
+ A LAQTT+R+ LG +L ++ +RE + ++ ++ A D WGI+ R EIKD+
Sbjct: 86 ADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVK 145
Query: 650 VPPRVKESMQMQVEAERRKRATV 718
+P +++ +M + EA R RA V
Sbjct: 146 LPVQLQRAMAAEAEASREARAKV 168
>ref|NP_001193036.1| podocin [Bos taurus].
Length = 383
Score = 80.9 bits (198), Expect = 3e-15
Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 2/197 (1%)
Frame = +2
Query: 227 VPQQEAWVVERMGRF--HRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVT 400
V + E ++ R+G R PGL +P LD V L+ + +P VT D
Sbjct: 128 VQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLDTYHKVD-LRLQTLEIPFHEIVTKDMFV 186
Query: 401 LQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIV 580
++ID + Y R+ + + AV L QTTM+ L SL ++ ER+++ +
Sbjct: 187 MEIDAICYYRMENASLLLNSLAHVSKAVQFLVQTTMKRLLAHRSLTEILLERKNIAQDVK 246
Query: 581 DAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVA 760
A++ WGI+ R EIKD+ +P ++ S+ ++ EA+R+ + ++ +EG + ++ ++
Sbjct: 247 VALDAVTCIWGIKVERTEIKDVRLPAGLQHSLAVEAEAQRQAKVRMIAAEGEKAASESL- 305
Query: 761 EGKKQAQILASEAEKAE 811
+ A+IL+ A+
Sbjct: 306 --RMAAEILSGTPAAAQ 320
>ref|XP_002694208.1| PREDICTED: nephrosis 2, idiopathic, steroid-resistant (podocin)
[Bos taurus].
Length = 383
Score = 80.9 bits (198), Expect = 3e-15
Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 2/197 (1%)
Frame = +2
Query: 227 VPQQEAWVVERMGRF--HRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVT 400
V + E ++ R+G R PGL +P LD V L+ + +P VT D
Sbjct: 128 VQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLDTYHKVD-LRLQTLEIPFHEIVTKDMFV 186
Query: 401 LQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIV 580
++ID + Y R+ + + AV L QTTM+ L SL ++ ER+++ +
Sbjct: 187 MEIDAICYYRMENASLLLNSLAHVSKAVQFLVQTTMKRLLAHRSLTEILLERKNIAQDVK 246
Query: 581 DAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVA 760
A++ WGI+ R EIKD+ +P ++ S+ ++ EA+R+ + ++ +EG + ++ ++
Sbjct: 247 VALDAVTCIWGIKVERTEIKDVRLPAGLQHSLAVEAEAQRQAKVRMIAAEGEKAASESL- 305
Query: 761 EGKKQAQILASEAEKAE 811
+ A+IL+ A+
Sbjct: 306 --RMAAEILSGTPAAAQ 320
>ref|NP_001179360.1| stomatin-like protein 1 [Bos taurus].
Length = 398
Score = 58.9 bits (141), Expect = 1e-08
Identities = 38/137 (27%), Positives = 61/137 (44%)
Frame = +2
Query: 227 VPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVTLQ 406
VP E +V R+GR PG+ +L+P +D + V L+ +VP + D L
Sbjct: 82 VPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVD-LRTRAFSVPPCKLASKDGAVLS 140
Query: 407 IDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIVDA 586
+ + RI DP + V+D A AQ M L K L ++ E+ ++ ++
Sbjct: 141 VGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLREIQMEKLKISDQLLLE 200
Query: 587 INQAADCWGIRCLRYEI 637
IN WG+ R E+
Sbjct: 201 INDVTRAWGLEVDRVEL 217
>ref|XP_002696685.1| PREDICTED: stomatin (EPB72)-like 1 [Bos taurus].
Length = 398
Score = 58.9 bits (141), Expect = 1e-08
Identities = 38/137 (27%), Positives = 61/137 (44%)
Frame = +2
Query: 227 VPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVTLQ 406
VP E +V R+GR PG+ +L+P +D + V L+ +VP + D L
Sbjct: 82 VPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVD-LRTRAFSVPPCKLASKDGAVLS 140
Query: 407 IDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIVDA 586
+ + RI DP + V+D A AQ M L K L ++ E+ ++ ++
Sbjct: 141 VGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLREIQMEKLKISDQLLLE 200
Query: 587 INQAADCWGIRCLRYEI 637
IN WG+ R E+
Sbjct: 201 INDVTRAWGLEVDRVEL 217
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,742,756
Number of extensions: 1327009
Number of successful extensions: 4237
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4222
Number of HSP's successfully gapped: 9
Length of query: 545
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 438
Effective length of database: 14,140,958
Effective search space: 6193739604
Effective search space used: 6193739604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012550
(1636 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122029.1| PREDICTED: stomatin-like protein 2-like isof... 521 e-148
Alignment gi|XP_003353611.1| PREDICTED: stomatin-like protein 2-like [Sus... 521 e-148
Alignment gi|XP_003353612.1| PREDICTED: stomatin-like protein 2-like isof... 409 e-114
Alignment gi|XP_003122151.2| PREDICTED: erythrocyte band 7 integral membr... 108 1e-23
Alignment gi|XP_003353682.1| PREDICTED: erythrocyte band 7 integral membr... 96 4e-20
Alignment gi|XP_003130389.1| PREDICTED: podocin-like [Sus scrofa]. 83 5e-16
Alignment gi|XP_003130984.2| PREDICTED: hypothetical protein LOC100525123... 72 7e-13
Alignment gi|XP_003356727.1| PREDICTED: stomatin-like protein 1 isoform 2... 61 2e-09
Alignment gi|XP_001928425.1| PREDICTED: stomatin-like protein 1 isoform 1... 61 2e-09
Alignment gi|XP_003357877.1| PREDICTED: stomatin-like protein 3-like [Sus... 55 1e-07
>ref|XP_003122029.1| PREDICTED: stomatin-like protein 2-like isoform 1 [Sus scrofa].
Length = 356
Score = 521 bits (1343), Expect = e-148
Identities = 279/322 (86%), Positives = 279/322 (86%)
Frame = +2
Query: 209 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 388
NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL
Sbjct: 35 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 94
Query: 389 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 568
DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN
Sbjct: 95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 154
Query: 569 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 748
ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA
Sbjct: 155 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 214
Query: 749 INVAEGKKQAQILASEAEKAEQINQXXXXXXXXXXXXXXXXXXXXXXXXXXTQHNGDAAA 928
INVAEGKKQAQILASEAEKAEQINQ TQHNGDAAA
Sbjct: 215 INVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRILAAALTQHNGDAAA 274
Query: 929 SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPVXXXXXXXXXX 1108
SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPV
Sbjct: 275 SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPVPGPQDSVSSR 334
Query: 1109 XXXXXXXTDASLDEELDRVKLS 1174
TDASLDEELDRVKLS
Sbjct: 335 SSRDVQGTDASLDEELDRVKLS 356
>ref|XP_003353611.1| PREDICTED: stomatin-like protein 2-like [Sus scrofa].
Length = 356
Score = 521 bits (1343), Expect = e-148
Identities = 279/322 (86%), Positives = 279/322 (86%)
Frame = +2
Query: 209 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 388
NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL
Sbjct: 35 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 94
Query: 389 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 568
DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN
Sbjct: 95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 154
Query: 569 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 748
ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA
Sbjct: 155 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 214
Query: 749 INVAEGKKQAQILASEAEKAEQINQXXXXXXXXXXXXXXXXXXXXXXXXXXTQHNGDAAA 928
INVAEGKKQAQILASEAEKAEQINQ TQHNGDAAA
Sbjct: 215 INVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRILAAALTQHNGDAAA 274
Query: 929 SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPVXXXXXXXXXX 1108
SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPV
Sbjct: 275 SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPVPGPQDSVSSR 334
Query: 1109 XXXXXXXTDASLDEELDRVKLS 1174
TDASLDEELDRVKLS
Sbjct: 335 SSRDVQGTDASLDEELDRVKLS 356
>ref|XP_003353612.1| PREDICTED: stomatin-like protein 2-like isoform 2 [Sus scrofa].
Length = 311
Score = 409 bits (1050), Expect = e-114
Identities = 234/322 (72%), Positives = 234/322 (72%)
Frame = +2
Query: 209 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 388
NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL
Sbjct: 35 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 94
Query: 389 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 568
DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFR
Sbjct: 95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFR------ 148
Query: 569 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 748
VEAERRKRATVLESEGTRESA
Sbjct: 149 ---------------------------------------VEAERRKRATVLESEGTRESA 169
Query: 749 INVAEGKKQAQILASEAEKAEQINQXXXXXXXXXXXXXXXXXXXXXXXXXXTQHNGDAAA 928
INVAEGKKQAQILASEAEKAEQINQ TQHNGDAAA
Sbjct: 170 INVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRILAAALTQHNGDAAA 229
Query: 929 SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPVXXXXXXXXXX 1108
SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPV
Sbjct: 230 SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPVPGPQDSVSSR 289
Query: 1109 XXXXXXXTDASLDEELDRVKLS 1174
TDASLDEELDRVKLS
Sbjct: 290 SSRDVQGTDASLDEELDRVKLS 311
>ref|XP_003122151.2| PREDICTED: erythrocyte band 7 integral membrane protein-like [Sus
scrofa].
Length = 279
Score = 108 bits (269), Expect = 1e-23
Identities = 61/202 (30%), Positives = 113/202 (55%), Gaps = 2/202 (0%)
Frame = +2
Query: 218 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 391
+ + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 49 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 107
Query: 392 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 571
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++ +RE +
Sbjct: 108 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAH 167
Query: 572 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAI 751
++ ++ A D WGI+ R EIKD+ +P +++ +M + EA R RA V+ +EG +
Sbjct: 168 NMQCTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEG----EM 223
Query: 752 NVAEGKKQAQILASEAEKAEQI 817
N + K+A ++ +E+ A Q+
Sbjct: 224 NASRALKEASMVITESPAALQL 245
>ref|XP_003353682.1| PREDICTED: erythrocyte band 7 integral membrane protein-like,
partial [Sus scrofa].
Length = 238
Score = 96.3 bits (238), Expect = 4e-20
Identities = 52/167 (31%), Positives = 94/167 (56%), Gaps = 2/167 (1%)
Frame = +2
Query: 218 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 391
+ + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 54 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 112
Query: 392 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 571
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++ +RE +
Sbjct: 113 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAH 172
Query: 572 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRA 712
++ ++ A D WGI+ R EIKD+ +P +++ +M + EA R RA
Sbjct: 173 NMQCTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARA 219
>ref|XP_003130389.1| PREDICTED: podocin-like [Sus scrofa].
Length = 379
Score = 82.8 bits (203), Expect = 5e-16
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Frame = +2
Query: 227 VPQQEAWVVERMGRF--HRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVT 400
V + E ++ R+G R PGL +P LD V L+ + +P VT D
Sbjct: 124 VQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLDTYHKVD-LRLQTLEIPFHEVVTKDMFV 182
Query: 401 LQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIV 580
++ID + Y R+ + + AV L QTTM+ L SL ++ ER+S+ +
Sbjct: 183 MEIDAICYYRMENASLLLSSLAHVSKAVQFLVQTTMKRLLAHRSLTEILLERKSIAQDVK 242
Query: 581 DAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 748
A++ WGI+ R EIKD+ +P ++ S+ ++ EA+R+ R ++ +EG + ++
Sbjct: 243 VALDAVTCIWGIKVERTEIKDVRLPAGLQHSLAVEAEAQRQARVRMIAAEGEKAAS 298
>ref|XP_003130984.2| PREDICTED: hypothetical protein LOC100525123 [Sus scrofa].
Length = 559
Score = 72.4 bits (176), Expect = 7e-13
Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 3/129 (2%)
Frame = +2
Query: 227 VPQQEAWVVERMGRFH--RILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVT 400
+ + E VV R+GR + PGL +++P +D V L+ + N+P Q +T D+VT
Sbjct: 103 IKEYERAVVFRLGRIQAQKAKGPGLILVLPCVDVFVKVD-LRTVTCNIPPQEILTRDSVT 161
Query: 401 LQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASI- 577
Q+DGV+Y RI A V D A LAQTT+R+ LG +L ++ RE + SI
Sbjct: 162 TQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQ 221
Query: 578 VDAINQAAD 604
+ + Q +D
Sbjct: 222 FEVLEQQSD 230
>ref|XP_003356727.1| PREDICTED: stomatin-like protein 1 isoform 2 [Sus scrofa].
Length = 327
Score = 60.8 bits (146), Expect = 2e-09
Identities = 39/137 (28%), Positives = 61/137 (44%)
Frame = +2
Query: 227 VPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVTLQ 406
VP E +V R+GR PG+ +L+P +D + V L+ NVP + D L
Sbjct: 82 VPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVD-LRTRAFNVPPCKLASKDGAVLS 140
Query: 407 IDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIVDA 586
+ + RI DP + V+D A AQ M L K L ++ E+ ++ ++
Sbjct: 141 VGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLREIQMEKLKISDQLLLE 200
Query: 587 INQAADCWGIRCLRYEI 637
IN WG+ R E+
Sbjct: 201 INDVTRAWGLEVDRVEL 217
>ref|XP_001928425.1| PREDICTED: stomatin-like protein 1 isoform 1 [Sus scrofa].
Length = 398
Score = 60.8 bits (146), Expect = 2e-09
Identities = 39/137 (28%), Positives = 61/137 (44%)
Frame = +2
Query: 227 VPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVTLQ 406
VP E +V R+GR PG+ +L+P +D + V L+ NVP + D L
Sbjct: 82 VPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVD-LRTRAFNVPPCKLASKDGAVLS 140
Query: 407 IDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIVDA 586
+ + RI DP + V+D A AQ M L K L ++ E+ ++ ++
Sbjct: 141 VGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLREIQMEKLKISDQLLLE 200
Query: 587 INQAADCWGIRCLRYEI 637
IN WG+ R E+
Sbjct: 201 INDVTRAWGLEVDRVEL 217
>ref|XP_003357877.1| PREDICTED: stomatin-like protein 3-like [Sus scrofa].
Length = 130
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/77 (36%), Positives = 46/77 (59%)
Frame = +2
Query: 587 INQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVAEG 766
++ A + WGIR R EIKD+ +P +++ SM + EA R RA VL +EG +N ++
Sbjct: 13 LDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARARVLAAEG----EMNASKS 68
Query: 767 KKQAQILASEAEKAEQI 817
K A ++ +E+ A Q+
Sbjct: 69 LKSASMVLAESPIALQL 85
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,758,393
Number of extensions: 1065011
Number of successful extensions: 2804
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2786
Number of HSP's successfully gapped: 10
Length of query: 545
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 441
Effective length of database: 8,754,644
Effective search space: 3860798004
Effective search space used: 3860798004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012550
(1636 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075720.1| stomatin-like protein 2 [Mus musculus]. 501 e-142
Alignment gi|NP_694796.1| stomatin-like protein 3 [Mus musculus]. 120 2e-27
Alignment gi|NP_038543.1| erythrocyte band 7 integral membrane protein [M... 110 4e-24
Alignment gi|NP_569723.1| podocin [Mus musculus]. 82 9e-16
Alignment gi|NP_081218.3| stomatin-like protein 1 [Mus musculus]. 59 9e-09
>ref|NP_075720.1| stomatin-like protein 2 [Mus musculus].
Length = 353
Score = 501 bits (1289), Expect = e-142
Identities = 270/322 (83%), Positives = 275/322 (85%)
Frame = +2
Query: 209 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 388
NTV+LFVPQQEAWVVERMGRFHRILEPGLN+LIPVLDRIRYVQSLKEIVINVPEQSAVTL
Sbjct: 35 NTVILFVPQQEAWVVERMGRFHRILEPGLNVLIPVLDRIRYVQSLKEIVINVPEQSAVTL 94
Query: 389 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 568
DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN
Sbjct: 95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 154
Query: 569 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 748
A+IVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA
Sbjct: 155 ANIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 214
Query: 749 INVAEGKKQAQILASEAEKAEQINQXXXXXXXXXXXXXXXXXXXXXXXXXXTQHNGDAAA 928
INVAEGKKQAQILASEAEKAEQINQ TQHNGDAAA
Sbjct: 215 INVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRILAGALTQHNGDAAA 274
Query: 929 SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPVXXXXXXXXXX 1108
SLTVAEQYVSAFSKLAKDSNT+LLPSNP DVTSMVAQAMGVYGALTKAPV
Sbjct: 275 SLTVAEQYVSAFSKLAKDSNTVLLPSNPSDVTSMVAQAMGVYGALTKAPV--PGAQNSSQ 332
Query: 1109 XXXXXXXTDASLDEELDRVKLS 1174
TD S+ EEL RVKLS
Sbjct: 333 SRRDVQATDTSI-EELGRVKLS 353
>ref|NP_694796.1| stomatin-like protein 3 [Mus musculus].
Length = 287
Score = 120 bits (302), Expect = 2e-27
Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 2/199 (1%)
Frame = +2
Query: 227 VPQQEAWVVERMGRFH--RILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVT 400
+ + E VV R+GR + PGL +++P +D V L+ + N+P Q +T D+VT
Sbjct: 50 IKEYERAVVFRLGRIQADKAKGPGLILVLPCIDVFVKVD-LRTVTCNIPPQEILTRDSVT 108
Query: 401 LQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIV 580
Q+DGV+Y RI A V D A LAQTT+R+ LG +L ++ RE + SI
Sbjct: 109 TQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTQTLSQILSGREEIAHSIQ 168
Query: 581 DAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVA 760
++ A + WGIR R EIKD+ +P +++ SM + EA R RA VL +EG +N +
Sbjct: 169 TLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARAKVLAAEG----EMNAS 224
Query: 761 EGKKQAQILASEAEKAEQI 817
+ K A ++ +E+ A Q+
Sbjct: 225 KSLKSASMVLAESPVALQL 243
>ref|NP_038543.1| erythrocyte band 7 integral membrane protein [Mus musculus].
Length = 284
Score = 110 bits (274), Expect = 4e-24
Identities = 62/202 (30%), Positives = 113/202 (55%), Gaps = 2/202 (0%)
Frame = +2
Query: 218 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 391
+ V + E ++ R+GR + PGL ++P D + V ++ I ++P Q +T D
Sbjct: 54 IKIVKEYERVIIFRLGRILQGGAKGPGLFFILPCTDSLIKVD-MRTISFDIPPQEVLTKD 112
Query: 392 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 571
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++ +RE +
Sbjct: 113 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNALGTKNLSQILSDREEIAH 172
Query: 572 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAI 751
+ ++ A D WGI+ R EIKD+ +P +++ +M + EA R RA V+ +EG +
Sbjct: 173 HMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEAAREARAKVIAAEG----EM 228
Query: 752 NVAEGKKQAQILASEAEKAEQI 817
N + K+A ++ +E+ A Q+
Sbjct: 229 NASRALKEASMVITESPAALQL 250
>ref|NP_569723.1| podocin [Mus musculus].
Length = 385
Score = 82.4 bits (202), Expect = 9e-16
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Frame = +2
Query: 227 VPQQEAWVVERMGRF--HRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVT 400
V + E ++ R+G R PGL +P LD V L+ + +P VT D
Sbjct: 130 VQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLDTYHKVD-LRLQTLEIPFHEVVTKDMFI 188
Query: 401 LQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIV 580
++ID V Y R+ + + A+ L QTTM+ L SL ++ ER+S+ +
Sbjct: 189 MEIDAVCYYRMENASLLLSSLAHVSKAIQFLVQTTMKRLLAHRSLTEILLERKSIAQDVK 248
Query: 581 DAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 748
A++ WGI+ R EIKD+ +P ++ S+ ++ EA+R+ + V+ +EG + ++
Sbjct: 249 VALDAVTCIWGIKVERTEIKDVRLPAGLQHSLAVEAEAQRQAKVRVIAAEGEKAAS 304
>ref|NP_081218.3| stomatin-like protein 1 [Mus musculus].
Length = 399
Score = 59.3 bits (142), Expect = 9e-09
Identities = 37/137 (27%), Positives = 59/137 (43%)
Frame = +2
Query: 227 VPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVTLQ 406
VP E +V R+GR PG+ +L+P +D + V L+ NVP + D L
Sbjct: 82 VPTYERMIVFRLGRIRNPQGPGMVLLLPFIDSFQRVD-LRTRAFNVPPCKLASKDGAVLS 140
Query: 407 IDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIVDA 586
+ + RI DP + V+D A A M L + L ++ E+ + ++
Sbjct: 141 VGADVQFRIWDPVLSVMAVKDLNTATRMTAHNAMTKALLRRPLQEIQMEKLKIGDQLLLE 200
Query: 587 INQAADCWGIRCLRYEI 637
IN WG+ R E+
Sbjct: 201 INDVTRAWGLEVDRVEL 217
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,552,530
Number of extensions: 1001535
Number of successful extensions: 3503
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3491
Number of HSP's successfully gapped: 5
Length of query: 545
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 439
Effective length of database: 12,433,743
Effective search space: 5458413177
Effective search space used: 5458413177
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012550
(1636 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038470.1| stomatin-like protein 2 [Homo sapiens]. 521 e-148
Alignment gi|NP_001137505.1| stomatin-like protein 3 isoform 2 [Homo sapi... 120 4e-27
Alignment gi|NP_660329.1| stomatin-like protein 3 isoform 1 [Homo sapiens]. 120 4e-27
Alignment gi|NP_004090.4| erythrocyte band 7 integral membrane protein is... 110 4e-24
Alignment gi|NP_055440.1| podocin [Homo sapiens]. 78 2e-14
Alignment gi|NP_004800.2| stomatin-like protein 1 [Homo sapiens]. 61 3e-09
>ref|NP_038470.1| stomatin-like protein 2 [Homo sapiens].
Length = 356
Score = 521 bits (1341), Expect = e-148
Identities = 278/322 (86%), Positives = 279/322 (86%)
Frame = +2
Query: 209 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 388
NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL
Sbjct: 35 NTVVLFVPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTL 94
Query: 389 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 568
DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN
Sbjct: 95 DNVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLN 154
Query: 569 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 748
ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA
Sbjct: 155 ASIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 214
Query: 749 INVAEGKKQAQILASEAEKAEQINQXXXXXXXXXXXXXXXXXXXXXXXXXXTQHNGDAAA 928
INVAEGKKQAQILASEAEKAEQINQ TQHNGDAAA
Sbjct: 215 INVAEGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRILAAALTQHNGDAAA 274
Query: 929 SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPVXXXXXXXXXX 1108
SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPV
Sbjct: 275 SLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPVPGTPDSLSSG 334
Query: 1109 XXXXXXXTDASLDEELDRVKLS 1174
TDASLDEELDRVK+S
Sbjct: 335 SSRDVQGTDASLDEELDRVKMS 356
>ref|NP_001137505.1| stomatin-like protein 3 isoform 2 [Homo sapiens].
Length = 282
Score = 120 bits (301), Expect = 4e-27
Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 2/199 (1%)
Frame = +2
Query: 227 VPQQEAWVVERMGRFH--RILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVT 400
+ + E VV R+GR + PGL +++P +D V L+ + N+P Q +T D+VT
Sbjct: 45 IKEYERAVVFRLGRIQADKAKGPGLILVLPCIDVFVKVD-LRTVTCNIPPQEILTRDSVT 103
Query: 401 LQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIV 580
Q+DGV+Y RI A V D A LAQTT+R+ LG +L ++ RE + SI
Sbjct: 104 TQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQ 163
Query: 581 DAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVA 760
++ A + WGIR R EIKD+ +P +++ SM + EA R RA VL +EG +N +
Sbjct: 164 TLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARAKVLAAEG----EMNAS 219
Query: 761 EGKKQAQILASEAEKAEQI 817
+ K A ++ +E+ A Q+
Sbjct: 220 KSLKSASMVLAESPIALQL 238
>ref|NP_660329.1| stomatin-like protein 3 isoform 1 [Homo sapiens].
Length = 291
Score = 120 bits (301), Expect = 4e-27
Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 2/199 (1%)
Frame = +2
Query: 227 VPQQEAWVVERMGRFH--RILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVT 400
+ + E VV R+GR + PGL +++P +D V L+ + N+P Q +T D+VT
Sbjct: 54 IKEYERAVVFRLGRIQADKAKGPGLILVLPCIDVFVKVD-LRTVTCNIPPQEILTRDSVT 112
Query: 401 LQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIV 580
Q+DGV+Y RI A V D A LAQTT+R+ LG +L ++ RE + SI
Sbjct: 113 TQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQ 172
Query: 581 DAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVA 760
++ A + WGIR R EIKD+ +P +++ SM + EA R RA VL +EG +N +
Sbjct: 173 TLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARAKVLAAEG----EMNAS 228
Query: 761 EGKKQAQILASEAEKAEQI 817
+ K A ++ +E+ A Q+
Sbjct: 229 KSLKSASMVLAESPIALQL 247
>ref|NP_004090.4| erythrocyte band 7 integral membrane protein isoform a [Homo
sapiens].
Length = 288
Score = 110 bits (275), Expect = 4e-24
Identities = 61/202 (30%), Positives = 113/202 (55%), Gaps = 2/202 (0%)
Frame = +2
Query: 218 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 391
+ + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 54 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 112
Query: 392 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 571
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++ +RE +
Sbjct: 113 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAH 172
Query: 572 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAI 751
++ ++ A D WGI+ R EIKD+ +P +++ +M + EA R RA V+ +EG +
Sbjct: 173 NMQSTLDDATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEG----EM 228
Query: 752 NVAEGKKQAQILASEAEKAEQI 817
N + K+A ++ +E+ A Q+
Sbjct: 229 NASRALKEASMVITESPAALQL 250
>ref|NP_055440.1| podocin [Homo sapiens].
Length = 383
Score = 78.2 bits (191), Expect = 2e-14
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 2/179 (1%)
Frame = +2
Query: 218 VLFVPQQEAWVVERMGRF--HRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 391
V V + E ++ R+G R PGL +P LD V L+ + +P VT D
Sbjct: 125 VKVVQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLDTYHKVD-LRLQTLEIPFHEIVTKD 183
Query: 392 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 571
++ID + Y R+ + + AV L QTTM+ L SL ++ ER+S+
Sbjct: 184 MFIMEIDAICYYRMENASLLLSSLAHVSKAVQFLVQTTMKRLLAHRSLTEILLERKSIAQ 243
Query: 572 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESA 748
A++ WGI+ R EIKD+ +P ++ S+ ++ EA+R+ + ++ +E + ++
Sbjct: 244 DAKVALDSVTCIWGIKVERIEIKDVRLPAGLQHSLAVEAEAQRQAKVRMIAAEAEKAAS 302
>ref|NP_004800.2| stomatin-like protein 1 [Homo sapiens].
Length = 398
Score = 60.8 bits (146), Expect = 3e-09
Identities = 39/137 (28%), Positives = 61/137 (44%)
Frame = +2
Query: 227 VPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVTLQ 406
VP E +V R+GR PG+ +L+P +D + V L+ NVP + D L
Sbjct: 82 VPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVD-LRTRAFNVPPCKLASKDGAVLS 140
Query: 407 IDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIVDA 586
+ + RI DP + V+D A AQ M L K L ++ E+ ++ ++
Sbjct: 141 VGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLREIQMEKLKISDQLLLE 200
Query: 587 INQAADCWGIRCLRYEI 637
IN WG+ R E+
Sbjct: 201 INDVTRAWGLEVDRVEL 217
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,069,814
Number of extensions: 1192368
Number of successful extensions: 4072
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4055
Number of HSP's successfully gapped: 6
Length of query: 545
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 438
Effective length of database: 14,770,016
Effective search space: 6469267008
Effective search space used: 6469267008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012550
(1636 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 549 e-153
>Sscrofa_Chr01
|| Length = 315321322
Score = 549 bits (277), Expect = e-153
Identities = 277/277 (100%)
Strand = Plus / Minus
Query: 1035 ctcaggccatgggtgtgtatggggccctcaccaaagccccagtgccagggcctcaggact 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263417147 ctcaggccatgggtgtgtatggggccctcaccaaagccccagtgccagggcctcaggact 263417088
Query: 1095 cagtctccagcaggagcagcagagatgtccagggcacagatgcaagtcttgatgaggaac 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263417087 cagtctccagcaggagcagcagagatgtccagggcacagatgcaagtcttgatgaggaac 263417028
Query: 1155 tcgatcgagtcaagctgagttaatggagttgggcttagtcagggaggcgggggataggga 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263417027 tcgatcgagtcaagctgagttaatggagttgggcttagtcagggaggcgggggataggga 263416968
Query: 1215 agcagcattcccagactctggctatagcctccctgccaagattttggttattattttttt 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263416967 agcagcattcccagactctggctatagcctccctgccaagattttggttattattttttt 263416908
Query: 1275 atttgaactttaatcatgtaataaactggccaatggc 1311
|||||||||||||||||||||||||||||||||||||
Sbjct: 263416907 atttgaactttaatcatgtaataaactggccaatggc 263416871
Score = 293 bits (148), Expect = 2e-76
Identities = 148/148 (100%)
Strand = Plus / Minus
Query: 684 aggtggaggcagagcggcggaaacgggccacggtgctggagtctgagggtactcgagagt 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263418215 aggtggaggcagagcggcggaaacgggccacggtgctggagtctgagggtactcgagagt 263418156
Query: 744 cggccatcaacgtggcagaggggaagaagcaggcacagatcctggcctccgaggcagaaa 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263418155 cggccatcaacgtggcagaggggaagaagcaggcacagatcctggcctccgaggcagaaa 263418096
Query: 804 aggctgaacaaataaatcaggcagcagg 831
||||||||||||||||||||||||||||
Sbjct: 263418095 aggctgaacaaataaatcaggcagcagg 263418068
Score = 293 bits (148), Expect = 2e-76
Identities = 151/152 (99%)
Strand = Plus / Minus
Query: 1 atcctgcggagtggaaataccggaggaaaggttcaggtccggacattcagaacgaccgct 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263420077 atccggcggagtggaaataccggaggaaaggttcaggtccggacattcagaacgaccgct 263420018
Query: 61 ctgctcctcgtctctttggttccggaggtcgctgtggccgtgggaaatgctggcgcgcgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263420017 ctgctcctcgtctctttggttccggaggtcgctgtggccgtgggaaatgctggcgcgcgc 263419958
Query: 121 ggcgcgggggactggagcccttttgctgaggg 152
||||||||||||||||||||||||||||||||
Sbjct: 263419957 ggcgcgggggactggagcccttttgctgaggg 263419926
Score = 278 bits (140), Expect = 9e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 550 ggagcgggagtccctgaatgctagcatcgtagatgccatcaaccaggctgctgactgctg 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263418508 ggagcgggagtccctgaatgctagcatcgtagatgccatcaaccaggctgctgactgctg 263418449
Query: 610 gggcatccgctgcctccgttatgagatcaaggatatccatgtgccaccccgggtgaaaga 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263418448 gggcatccgctgcctccgttatgagatcaaggatatccatgtgccaccccgggtgaaaga 263418389
Query: 670 gtccatgcagatgcaggtgg 689
||||||||||||||||||||
Sbjct: 263418388 gtccatgcagatgcaggtgg 263418369
Score = 278 bits (140), Expect = 9e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 151 gggctccgtacaggcttctggccgtgctccgcgccgctcctcctctggattgccccgaaa 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263419688 gggctccgtacaggcttctggccgtgctccgcgccgctcctcctctggattgccccgaaa 263419629
Query: 211 caccgtggtactatttgtgccccagcaggaggcctgggtggtggagcgaatgggccgatt 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263419628 caccgtggtactatttgtgccccagcaggaggcctgggtggtggagcgaatgggccgatt 263419569
Query: 271 ccaccggatcctggagcctg 290
||||||||||||||||||||
Sbjct: 263419568 ccaccggatcctggagcctg 263419549
Score = 258 bits (130), Expect = 9e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 911 aatggagatgcagcagcctcactgactgtggccgagcagtatgtcagcgcgttctctaaa 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263417643 aatggagatgcagcagcctcactgactgtggccgagcagtatgtcagcgcgttctctaaa 263417584
Query: 971 ctggccaaagactccaacactatcctgctgccctccaaccctggcgatgtcaccagtatg 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263417583 ctggccaaagactccaacactatcctgctgccctccaaccctggcgatgtcaccagtatg 263417524
Query: 1031 gtggctcagg 1040
||||||||||
Sbjct: 263417523 gtggctcagg 263417514
Score = 208 bits (105), Expect = 7e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 447 aggccagctatggtgtggaggaccctgagtatgctgtcacccaactagctcagacaacca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263418757 aggccagctatggtgtggaggaccctgagtatgctgtcacccaactagctcagacaacca 263418698
Query: 507 tgagatcagagctcggcaaactctctctggacaaagtcttccggg 551
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263418697 tgagatcagagctcggcaaactctctctggacaaagtcttccggg 263418653
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 294 tgaacatcctcatccctgtgttagaccggatccgctatgtccagagtctcaaggaaattg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263419113 tgaacatcctcatccctgtgttagaccggatccgctatgtccagagtctcaaggaaattg 263419054
Query: 354 tcatcaacgtgcctgagcagtcagctgtgactcttg 389
||||||||||||||||||||||||||||||||||||
Sbjct: 263419053 tcatcaacgtgcctgagcagtcagctgtgactcttg 263419018
Score = 165 bits (83), Expect = 1e-37
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 828 caggagaggccagtgcagttctggccaaggccaaggctaaagctgaagctattcgcattc 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263417954 caggagaggccagtgcagttctggccaaggccaaggctaaagctgaagctattcgcattc 263417895
Query: 888 tggctgcagctctgacacaacat 910
|||||||||||||||||||||||
Sbjct: 263417894 tggctgcagctctgacacaacat 263417872
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 389 gacaatgtaactctgcaaattgatggagtcctttacctgcgcatcatggacccttacaag 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263418906 gacaatgtaactctgcaaattgatggagtcctttacctgcgcatcatggacccttacaag 263418847
Query: 449 g 449
|
Sbjct: 263418846 g 263418846
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,751,143
Number of extensions: 438
Number of successful extensions: 438
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 10
Length of query: 1636
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1614
Effective length of database: 2,808,408,574
Effective search space: 4532771438436
Effective search space used: 4532771438436
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)