Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012552
(1123 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848855.1| PREDICTED: hypothetical protein XP_843762 [Cani... 202 5e-52
>ref|XP_848855.1| PREDICTED: hypothetical protein XP_843762 [Canis familiaris].
Length = 107
Score = 202 bits (514), Expect = 5e-52
Identities = 101/104 (97%), Positives = 102/104 (98%)
Frame = +1
Query: 274 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 453
GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSF LFMYAKRNKRKIMRIFSVPPTAETL
Sbjct: 4 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFVLFMYAKRNKRKIMRIFSVPPTAETL 63
Query: 454 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 585
SE +FYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SESSFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,404,168
Number of extensions: 891218
Number of successful extensions: 3993
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3989
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 270
Effective length of database: 15,407,560
Effective search space: 4160041200
Effective search space used: 4160041200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012552
(1123 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139590.1| hypothetical protein LOC515895 [Bos taurus]. 204 1e-52
Alignment gi|NP_001091509.2| hypothetical protein LOC515895 [Bos taurus]. 204 1e-52
>ref|NP_001139590.1| hypothetical protein LOC515895 [Bos taurus].
Length = 107
Score = 204 bits (519), Expect = 1e-52
Identities = 100/104 (96%), Positives = 103/104 (99%)
Frame = +1
Query: 274 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 453
GYGVMGDDG+MDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFS+PP AETL
Sbjct: 4 GYGVMGDDGAMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSLPPPAETL 63
Query: 454 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 585
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQ+QADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQSQADSVQLSLE 107
>ref|NP_001091509.2| hypothetical protein LOC515895 [Bos taurus].
Length = 107
Score = 204 bits (519), Expect = 1e-52
Identities = 100/104 (96%), Positives = 103/104 (99%)
Frame = +1
Query: 274 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 453
GYGVMGDDG+MDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFS+PP AETL
Sbjct: 4 GYGVMGDDGAMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSLPPPAETL 63
Query: 454 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 585
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQ+QADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQSQADSVQLSLE 107
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,615,422
Number of extensions: 1001351
Number of successful extensions: 3760
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3753
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,240,222
Effective search space: 3844859940
Effective search space used: 3844859940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012552
(1123 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177153.1| chromosome 8 open reading frame 40 [Sus scro... 211 8e-55
Alignment gi|NP_001177152.1| chromosome 8 open reading frame 40 [Sus scro... 211 8e-55
Alignment gi|NP_001177151.1| chromosome 8 open reading frame 40 [Sus scro... 211 8e-55
>ref|NP_001177153.1| chromosome 8 open reading frame 40 [Sus scrofa].
Length = 107
Score = 211 bits (536), Expect = 8e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +1
Query: 274 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 453
GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL
Sbjct: 4 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 63
Query: 454 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 585
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>ref|NP_001177152.1| chromosome 8 open reading frame 40 [Sus scrofa].
Length = 107
Score = 211 bits (536), Expect = 8e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +1
Query: 274 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 453
GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL
Sbjct: 4 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 63
Query: 454 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 585
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>ref|NP_001177151.1| chromosome 8 open reading frame 40 [Sus scrofa].
Length = 107
Score = 211 bits (536), Expect = 8e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +1
Query: 274 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 453
GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL
Sbjct: 4 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 63
Query: 454 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 585
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,598,797
Number of extensions: 858297
Number of successful extensions: 2478
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2476
Number of HSP's successfully gapped: 3
Length of query: 374
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 274
Effective length of database: 8,854,232
Effective search space: 2426059568
Effective search space used: 2426059568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012552
(1123 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139589.1| hypothetical protein LOC102032 isoform 2 [Mu... 181 7e-46
Alignment gi|NP_001012685.2| hypothetical protein LOC102032 isoform 1 [Mu... 181 7e-46
>ref|NP_001139589.1| hypothetical protein LOC102032 isoform 2 [Mus musculus].
Length = 107
Score = 181 bits (460), Expect = 7e-46
Identities = 86/103 (83%), Positives = 97/103 (94%)
Frame = +1
Query: 277 YGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETLS 456
YGVM DDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKRKIMRIFSVPPT LS
Sbjct: 5 YGVMADDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRKIMRIFSVPPTEGMLS 64
Query: 457 EPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 585
EP+FYDT+S+IRLRQQ+E + +SRKY+YQQPQ+QADSVQLSLE
Sbjct: 65 EPSFYDTVSRIRLRQQVEAHPVSRKYEYQQPQSQADSVQLSLE 107
>ref|NP_001012685.2| hypothetical protein LOC102032 isoform 1 [Mus musculus].
Length = 112
Score = 181 bits (460), Expect = 7e-46
Identities = 86/103 (83%), Positives = 97/103 (94%)
Frame = +1
Query: 277 YGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETLS 456
YGVM DDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKRKIMRIFSVPPT LS
Sbjct: 10 YGVMADDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRKIMRIFSVPPTEGMLS 69
Query: 457 EPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 585
EP+FYDT+S+IRLRQQ+E + +SRKY+YQQPQ+QADSVQLSLE
Sbjct: 70 EPSFYDTVSRIRLRQQVEAHPVSRKYEYQQPQSQADSVQLSLE 112
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,503,176
Number of extensions: 729632
Number of successful extensions: 2889
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2888
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 271
Effective length of database: 12,523,851
Effective search space: 3393963621
Effective search space used: 3393963621
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012552
(1123 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129146.1| hypothetical protein LOC114926 [Homo sapiens]. 204 9e-53
Alignment gi|NP_612445.2| hypothetical protein LOC114926 [Homo sapiens]. 204 9e-53
Alignment gi|NP_001129147.1| hypothetical protein LOC114926 [Homo sapiens]. 204 9e-53
Alignment gi|NP_001129148.1| hypothetical protein LOC114926 [Homo sapiens]. 204 9e-53
>ref|NP_001129146.1| hypothetical protein LOC114926 [Homo sapiens].
Length = 107
Score = 204 bits (520), Expect = 9e-53
Identities = 99/104 (95%), Positives = 103/104 (99%)
Frame = +1
Query: 274 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 453
GYGVMGDDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKR+IMRIFSVPPT ETL
Sbjct: 4 GYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETL 63
Query: 454 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 585
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>ref|NP_612445.2| hypothetical protein LOC114926 [Homo sapiens].
Length = 107
Score = 204 bits (520), Expect = 9e-53
Identities = 99/104 (95%), Positives = 103/104 (99%)
Frame = +1
Query: 274 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 453
GYGVMGDDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKR+IMRIFSVPPT ETL
Sbjct: 4 GYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETL 63
Query: 454 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 585
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>ref|NP_001129147.1| hypothetical protein LOC114926 [Homo sapiens].
Length = 107
Score = 204 bits (520), Expect = 9e-53
Identities = 99/104 (95%), Positives = 103/104 (99%)
Frame = +1
Query: 274 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 453
GYGVMGDDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKR+IMRIFSVPPT ETL
Sbjct: 4 GYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETL 63
Query: 454 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 585
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>ref|NP_001129148.1| hypothetical protein LOC114926 [Homo sapiens].
Length = 107
Score = 204 bits (520), Expect = 9e-53
Identities = 99/104 (95%), Positives = 103/104 (99%)
Frame = +1
Query: 274 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 453
GYGVMGDDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKR+IMRIFSVPPT ETL
Sbjct: 4 GYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETL 63
Query: 454 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 585
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,643,351
Number of extensions: 856893
Number of successful extensions: 3447
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3445
Number of HSP's successfully gapped: 4
Length of query: 374
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,868,908
Effective search space: 4014605160
Effective search space used: 4014605160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012552
(1123 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 442 e-121
>Sscrofa_Chr17
|| Length = 69701581
Score = 442 bits (223), Expect = e-121
Identities = 229/231 (99%)
Strand = Plus / Minus
Query: 757 ttaaattgcatctccaaatcatttgttacataaatttaaaaggcctcaaaagacctgaat 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12814974 ttaaattgcatctccaaatcatttgttacataaatttaaaaggcctcaaaagacctgaat 12814915
Query: 817 gcagagattctgcctatacctaacgaggatcgatggtgatttcaccatgggaagacgttt 876
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 12814914 gcagagattctgcctatacctaacgaggatcgatggtgatttcaccatgggaggacgttt 12814855
Query: 877 cgtttcttcaggatacaatcagaaataaaaacacatccttggaagccagagtctagagct 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12814854 cgtttcttcaggatacaatcagaaataaaaacacatccttggaagccagagtctagagct 12814795
Query: 937 gaggccaccttgatttgaactttttttgccaaattaaaaaataaaaatctt 987
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 12814794 gaggccacctcgatttgaactttttttgccaaattaaaaaataaaaatctt 12814744
Score = 424 bits (214), Expect = e-116
Identities = 245/260 (94%)
Strand = Plus / Minus
Query: 1 gggaaccgggctccactcacgcgcccggaggcggcaccggggccgtcgctgcgcttctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12830740 gggaaccgggctccactcacgcgcccggaggcggcaccggggccgtcgctgcgcttctcc 12830681
Query: 61 ggttcaaaccctgagannnnnnnnnnnnnnaaagacctggctccttgttccatccggaag 120
|||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 12830680 ggttcaaaccctgagaggggggcgggggggaaagacctggctccttgttccatccggaag 12830621
Query: 121 ccaacgggccggcaggaaatgacgaagcagaggtcgtccgggtccgttcggtaaccggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12830620 ccaacgggccggcaggaaatgacgaagcagaggtcgtccgggtccgttcggtaaccggct 12830561
Query: 181 ccgcgcgtccggccgcaactgcgggggaaggagccccgagcagagcagcccagcctcgcg 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 12830560 ccgcgcgtccggccgcaactgcgggggaaggagccccgagcagaacagcccagcctcgcg 12830501
Query: 241 ccgcctgcggagcgagcagc 260
||||||||||||||||||||
Sbjct: 12830500 ccgcctgcggagcgagcagc 12830481
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 524 caagaaagtatgattatcagcagccacagaaccaagctgacagtgtacagctgtcactgg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5524126 caagaaagtatgattatcagcagccacagaaccaagctgacagtgtacagctgtcactgg 5524185
Query: 584 aatgaaatctcagaaaatgagcaacagaagtgatcattgttcaagcgtatggtctcctca 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5524186 aatgaaatctcagaaaatgagcaacagaagtgatcattgttcaagcgtatggtctcctca 5524245
Query: 644 ttctactaaatcatcaatgcc 664
|||||||||||||||||||||
Sbjct: 5524246 ttctactaaatcatcaatgcc 5524266
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 524 caagaaagtatgattatcagcagccacagaaccaagctgacagtgtacagctgtcactgg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12815206 caagaaagtatgattatcagcagccacagaaccaagctgacagtgtacagctgtcactgg 12815147
Query: 584 aatgaaatctcagaaaatgagcaacagaagtgatcattgttcaagcgtatggtctcctca 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12815146 aatgaaatctcagaaaatgagcaacagaagtgatcattgttcaagcgtatggtctcctca 12815087
Query: 644 ttctactaaatcatcaatgcc 664
|||||||||||||||||||||
Sbjct: 12815086 ttctactaaatcatcaatgcc 12815066
Score = 268 bits (135), Expect = 6e-69
Identities = 138/139 (99%)
Strand = Plus / Minus
Query: 261 ccccatgcctgcaggttacggagtaatgggtgacgatggttccatggattacagtgttca 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12823972 ccccatgcctgcaggttacggagtaatgggtgacgatggttccatggattacagtgttca 12823913
Query: 321 cgaggcctggaatgaagccaccaacgtttacctggttgtgatccttgtcagctttgggct 380
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 12823912 cgaggcctggaatgaagccaccaacgtttacctggtcgtgatccttgtcagctttgggct 12823853
Query: 381 cttcatgtatgccaagagg 399
|||||||||||||||||||
Sbjct: 12823852 cttcatgtatgccaagagg 12823834
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 397 aggaataaaagaaaaattatgaggatattcagtgtgccgcctacagcagaaactttgtca 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12820451 aggaataaaagaaaaattatgaggatattcagtgtgccgcctacagcagaaactttgtca 12820392
Query: 457 gagcccaacttttatgacacaataagtaaaattcgtctaagacagcaactggaaatgtat 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12820391 gagcccaacttttatgacacaataagtaaaattcgtctaagacagcaactggaaatgtat 12820332
Query: 517 tccattt 523
|||||||
Sbjct: 12820331 tccattt 12820325
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,563,262
Number of extensions: 876
Number of successful extensions: 876
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 876
Number of HSP's successfully gapped: 7
Length of query: 1123
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1102
Effective length of database: 2,808,413,156
Effective search space: 3094871297912
Effective search space used: 3094871297912
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)