Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012555
(1048 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848855.1| PREDICTED: hypothetical protein XP_843762 [Cani... 207 2e-53
>ref|XP_848855.1| PREDICTED: hypothetical protein XP_843762 [Canis familiaris].
Length = 107
Score = 207 bits (526), Expect = 2e-53
Identities = 103/107 (96%), Positives = 104/107 (97%)
Frame = +3
Query: 231 MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA 410
MP GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSF LFMYAKRNKRKIMRIFSVPPTA
Sbjct: 1 MPGGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFVLFMYAKRNKRKIMRIFSVPPTA 60
Query: 411 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 551
ETLSE +FYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61 ETLSESSFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,727,278
Number of extensions: 594375
Number of successful extensions: 1712
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1712
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 245
Effective length of database: 15,407,560
Effective search space: 3774852200
Effective search space used: 3774852200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012555
(1048 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139590.1| hypothetical protein LOC515895 [Bos taurus]. 209 4e-54
Alignment gi|NP_001091509.2| hypothetical protein LOC515895 [Bos taurus]. 209 4e-54
>ref|NP_001139590.1| hypothetical protein LOC515895 [Bos taurus].
Length = 107
Score = 209 bits (531), Expect = 4e-54
Identities = 102/107 (95%), Positives = 105/107 (98%)
Frame = +3
Query: 231 MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA 410
MP GYGVMGDDG+MDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFS+PP A
Sbjct: 1 MPGGYGVMGDDGAMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSLPPPA 60
Query: 411 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 551
ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQ+QADSVQLSLE
Sbjct: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQSQADSVQLSLE 107
>ref|NP_001091509.2| hypothetical protein LOC515895 [Bos taurus].
Length = 107
Score = 209 bits (531), Expect = 4e-54
Identities = 102/107 (95%), Positives = 105/107 (98%)
Frame = +3
Query: 231 MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA 410
MP GYGVMGDDG+MDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFS+PP A
Sbjct: 1 MPGGYGVMGDDGAMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSLPPPA 60
Query: 411 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 551
ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQ+QADSVQLSLE
Sbjct: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQSQADSVQLSLE 107
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,964,856
Number of extensions: 677687
Number of successful extensions: 1679
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1679
Number of HSP's successfully gapped: 2
Length of query: 349
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,273,310
Effective search space: 3511234260
Effective search space used: 3511234260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012555
(1048 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177153.1| chromosome 8 open reading frame 40 [Sus scro... 217 1e-56
Alignment gi|NP_001177152.1| chromosome 8 open reading frame 40 [Sus scro... 217 1e-56
Alignment gi|NP_001177151.1| chromosome 8 open reading frame 40 [Sus scro... 217 1e-56
>ref|NP_001177153.1| chromosome 8 open reading frame 40 [Sus scrofa].
Length = 107
Score = 217 bits (552), Expect = 1e-56
Identities = 107/107 (100%), Positives = 107/107 (100%)
Frame = +3
Query: 231 MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA 410
MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA
Sbjct: 1 MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA 60
Query: 411 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 551
ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>ref|NP_001177152.1| chromosome 8 open reading frame 40 [Sus scrofa].
Length = 107
Score = 217 bits (552), Expect = 1e-56
Identities = 107/107 (100%), Positives = 107/107 (100%)
Frame = +3
Query: 231 MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA 410
MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA
Sbjct: 1 MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA 60
Query: 411 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 551
ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>ref|NP_001177151.1| chromosome 8 open reading frame 40 [Sus scrofa].
Length = 107
Score = 217 bits (552), Expect = 1e-56
Identities = 107/107 (100%), Positives = 107/107 (100%)
Frame = +3
Query: 231 MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA 410
MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA
Sbjct: 1 MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA 60
Query: 411 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 551
ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,556,587
Number of extensions: 581849
Number of successful extensions: 1113
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1113
Number of HSP's successfully gapped: 3
Length of query: 349
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 249
Effective length of database: 8,854,232
Effective search space: 2204703768
Effective search space used: 2204703768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012555
(1048 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012685.2| hypothetical protein LOC102032 isoform 1 [Mu... 186 3e-47
Alignment gi|NP_001139589.1| hypothetical protein LOC102032 isoform 2 [Mu... 183 2e-46
>ref|NP_001012685.2| hypothetical protein LOC102032 isoform 1 [Mus musculus].
Length = 112
Score = 186 bits (471), Expect = 3e-47
Identities = 88/108 (81%), Positives = 99/108 (91%)
Frame = +3
Query: 228 PMPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPT 407
PM YGVM DDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKRKIMRIFSVPPT
Sbjct: 5 PMAGSYGVMADDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRKIMRIFSVPPT 64
Query: 408 AETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 551
LSEP+FYDT+S+IRLRQQ+E + +SRKY+YQQPQ+QADSVQLSLE
Sbjct: 65 EGMLSEPSFYDTVSRIRLRQQVEAHPVSRKYEYQQPQSQADSVQLSLE 112
>ref|NP_001139589.1| hypothetical protein LOC102032 isoform 2 [Mus musculus].
Length = 107
Score = 183 bits (464), Expect = 2e-46
Identities = 87/107 (81%), Positives = 98/107 (91%)
Frame = +3
Query: 231 MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA 410
M YGVM DDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKRKIMRIFSVPPT
Sbjct: 1 MAGSYGVMADDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRKIMRIFSVPPTE 60
Query: 411 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 551
LSEP+FYDT+S+IRLRQQ+E + +SRKY+YQQPQ+QADSVQLSLE
Sbjct: 61 GMLSEPSFYDTVSRIRLRQQVEAHPVSRKYEYQQPQSQADSVQLSLE 107
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,984,302
Number of extensions: 502909
Number of successful extensions: 1392
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1392
Number of HSP's successfully gapped: 2
Length of query: 349
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 247
Effective length of database: 12,553,887
Effective search space: 3100810089
Effective search space used: 3100810089
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012555
(1048 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129146.1| hypothetical protein LOC114926 [Homo sapiens]. 206 3e-53
Alignment gi|NP_612445.2| hypothetical protein LOC114926 [Homo sapiens]. 206 3e-53
Alignment gi|NP_001129147.1| hypothetical protein LOC114926 [Homo sapiens]. 206 3e-53
Alignment gi|NP_001129148.1| hypothetical protein LOC114926 [Homo sapiens]. 206 3e-53
>ref|NP_001129146.1| hypothetical protein LOC114926 [Homo sapiens].
Length = 107
Score = 206 bits (524), Expect = 3e-53
Identities = 100/107 (93%), Positives = 104/107 (97%)
Frame = +3
Query: 231 MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA 410
M GYGVMGDDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKR+IMRIFSVPPT
Sbjct: 1 MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
Query: 411 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 551
ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>ref|NP_612445.2| hypothetical protein LOC114926 [Homo sapiens].
Length = 107
Score = 206 bits (524), Expect = 3e-53
Identities = 100/107 (93%), Positives = 104/107 (97%)
Frame = +3
Query: 231 MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA 410
M GYGVMGDDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKR+IMRIFSVPPT
Sbjct: 1 MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
Query: 411 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 551
ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>ref|NP_001129147.1| hypothetical protein LOC114926 [Homo sapiens].
Length = 107
Score = 206 bits (524), Expect = 3e-53
Identities = 100/107 (93%), Positives = 104/107 (97%)
Frame = +3
Query: 231 MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA 410
M GYGVMGDDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKR+IMRIFSVPPT
Sbjct: 1 MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
Query: 411 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 551
ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>ref|NP_001129148.1| hypothetical protein LOC114926 [Homo sapiens].
Length = 107
Score = 206 bits (524), Expect = 3e-53
Identities = 100/107 (93%), Positives = 104/107 (97%)
Frame = +3
Query: 231 MPAGYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTA 410
M GYGVMGDDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKR+IMRIFSVPPT
Sbjct: 1 MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
Query: 411 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 551
ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,186,858
Number of extensions: 581419
Number of successful extensions: 1670
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1670
Number of HSP's successfully gapped: 4
Length of query: 349
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,901,872
Effective search space: 3665860512
Effective search space used: 3665860512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012555
(1048 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 448 e-123
>Sscrofa_Chr17
|| Length = 69701581
Score = 448 bits (226), Expect = e-123
Identities = 226/226 (100%)
Strand = Plus / Minus
Query: 1 ttacgaaaagagaaaatctttgcgtttccagctaaatctcgaccgtgggccaaggcacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12831050 ttacgaaaagagaaaatctttgcgtttccagctaaatctcgaccgtgggccaaggcacac 12830991
Query: 61 tcgttctcccgcgcgggtagcggcgcccaggagcgccgaggcgggacgggaagctgcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12830990 tcgttctcccgcgcgggtagcggcgcccaggagcgccgaggcgggacgggaagctgcttg 12830931
Query: 121 cgctcccggaggacccggcccctctcccggcccgctcggacgcgccgcggccggacccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12830930 cgctcccggaggacccggcccctctcccggcccgctcggacgcgccgcggccggacccac 12830871
Query: 181 gtggacctccagccggcggccagacccaccgccctggagccccgag 226
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12830870 gtggacctccagccggcggccagacccaccgccctggagccccgag 12830825
Score = 422 bits (213), Expect = e-115
Identities = 230/233 (98%), Gaps = 2/233 (0%)
Strand = Plus / Minus
Query: 722 ttaaattgcatctccaaatcatttgttacataaatttaaaaggcctcaaaagacctgaat 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12814974 ttaaattgcatctccaaatcatttgttacataaatttaaaaggcctcaaaagacctgaat 12814915
Query: 782 gcagagattctgcctatacctaacgaggatcgatggtgatttcaccatgggaggacgttt 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12814914 gcagagattctgcctatacctaacgaggatcgatggtgatttcaccatgggaggacgttt 12814855
Query: 842 cgtttcttcaggatacaatcagaaataaaaacacatcccttggaagccagagtctagagc 901
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 12814854 cgtttcttcaggatacaatcagaaataaaaacacat-ccttggaagccagagtctagagc 12814796
Query: 902 tgaggccacctcgatttgaacttttttttggcaaattaaaaaataaaaatctt 954
||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 12814795 tgaggccacctcgatttgaac-tttttttgccaaattaaaaaataaaaatctt 12814744
Score = 280 bits (141), Expect = 1e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 490 caagaaagtatgattatcagcagccacagaaccaagctgacagtgtacagctgtcactgg 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5524126 caagaaagtatgattatcagcagccacagaaccaagctgacagtgtacagctgtcactgg 5524185
Query: 550 aatgaaatctcagaaaatgagcaacagaagtgatcattgttcaagcgtatggtctcctca 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5524186 aatgaaatctcagaaaatgagcaacagaagtgatcattgttcaagcgtatggtctcctca 5524245
Query: 610 ttctactaaatcatcaatgcc 630
|||||||||||||||||||||
Sbjct: 5524246 ttctactaaatcatcaatgcc 5524266
Score = 280 bits (141), Expect = 1e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 490 caagaaagtatgattatcagcagccacagaaccaagctgacagtgtacagctgtcactgg 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12815206 caagaaagtatgattatcagcagccacagaaccaagctgacagtgtacagctgtcactgg 12815147
Query: 550 aatgaaatctcagaaaatgagcaacagaagtgatcattgttcaagcgtatggtctcctca 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12815146 aatgaaatctcagaaaatgagcaacagaagtgatcattgttcaagcgtatggtctcctca 12815087
Query: 610 ttctactaaatcatcaatgcc 630
|||||||||||||||||||||
Sbjct: 12815086 ttctactaaatcatcaatgcc 12815066
Score = 272 bits (137), Expect = 4e-70
Identities = 140/141 (99%)
Strand = Plus / Minus
Query: 225 agccccatgcctgcaggttacggagtaatgggtgacgatggttccatggattacagtgtt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12823974 agccccatgcctgcaggttacggagtaatgggtgacgatggttccatggattacagtgtt 12823915
Query: 285 cacgaggcctggaatgaagccaccaacgtttacctggttgtgatccttgtcagctttggg 344
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 12823914 cacgaggcctggaatgaagccaccaacgtttacctggtcgtgatccttgtcagctttggg 12823855
Query: 345 ctcttcatgtatgccaagagg 365
|||||||||||||||||||||
Sbjct: 12823854 ctcttcatgtatgccaagagg 12823834
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 363 aggaataaaagaaaaattatgaggatattcagtgtgccgcctacagcagaaactttgtca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12820451 aggaataaaagaaaaattatgaggatattcagtgtgccgcctacagcagaaactttgtca 12820392
Query: 423 gagcccaacttttatgacacaataagtaaaattcgtctaagacagcaactggaaatgtat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12820391 gagcccaacttttatgacacaataagtaaaattcgtctaagacagcaactggaaatgtat 12820332
Query: 483 tccattt 489
|||||||
Sbjct: 12820331 tccattt 12820325
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,123,300
Number of extensions: 878
Number of successful extensions: 878
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 876
Number of HSP's successfully gapped: 6
Length of query: 1048
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1027
Effective length of database: 2,808,413,156
Effective search space: 2884240311212
Effective search space used: 2884240311212
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)