Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012556
(1106 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848855.1| PREDICTED: hypothetical protein XP_843762 [Cani... 202 5e-52
>ref|XP_848855.1| PREDICTED: hypothetical protein XP_843762 [Canis familiaris].
Length = 107
Score = 202 bits (514), Expect = 5e-52
Identities = 101/104 (97%), Positives = 102/104 (98%)
Frame = +2
Query: 224 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 403
GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSF LFMYAKRNKRKIMRIFSVPPTAETL
Sbjct: 4 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFVLFMYAKRNKRKIMRIFSVPPTAETL 63
Query: 404 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 535
SE +FYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SESSFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,165,171
Number of extensions: 838514
Number of successful extensions: 3328
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3321
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012556
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012556
(1106 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139590.1| hypothetical protein LOC515895 [Bos taurus]. 204 1e-52
Alignment gi|NP_001091509.2| hypothetical protein LOC515895 [Bos taurus]. 204 1e-52
>ref|NP_001139590.1| hypothetical protein LOC515895 [Bos taurus].
Length = 107
Score = 204 bits (519), Expect = 1e-52
Identities = 100/104 (96%), Positives = 103/104 (99%)
Frame = +2
Query: 224 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 403
GYGVMGDDG+MDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFS+PP AETL
Sbjct: 4 GYGVMGDDGAMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSLPPPAETL 63
Query: 404 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 535
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQ+QADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQSQADSVQLSLE 107
>ref|NP_001091509.2| hypothetical protein LOC515895 [Bos taurus].
Length = 107
Score = 204 bits (519), Expect = 1e-52
Identities = 100/104 (96%), Positives = 103/104 (99%)
Frame = +2
Query: 224 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 403
GYGVMGDDG+MDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFS+PP AETL
Sbjct: 4 GYGVMGDDGAMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSLPPPAETL 63
Query: 404 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 535
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQ+QADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQSQADSVQLSLE 107
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,458,613
Number of extensions: 966884
Number of successful extensions: 3177
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3165
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012556
(1106 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177153.1| chromosome 8 open reading frame 40 [Sus scro... 211 8e-55
Alignment gi|NP_001177152.1| chromosome 8 open reading frame 40 [Sus scro... 211 8e-55
Alignment gi|NP_001177151.1| chromosome 8 open reading frame 40 [Sus scro... 211 8e-55
>ref|NP_001177153.1| chromosome 8 open reading frame 40 [Sus scrofa].
Length = 107
Score = 211 bits (536), Expect = 8e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +2
Query: 224 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 403
GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL
Sbjct: 4 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 63
Query: 404 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 535
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>ref|NP_001177152.1| chromosome 8 open reading frame 40 [Sus scrofa].
Length = 107
Score = 211 bits (536), Expect = 8e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +2
Query: 224 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 403
GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL
Sbjct: 4 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 63
Query: 404 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 535
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>ref|NP_001177151.1| chromosome 8 open reading frame 40 [Sus scrofa].
Length = 107
Score = 211 bits (536), Expect = 8e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +2
Query: 224 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 403
GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL
Sbjct: 4 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 63
Query: 404 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 535
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,981,222
Number of extensions: 854089
Number of successful extensions: 2134
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2131
Number of HSP's successfully gapped: 3
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012556
(1106 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139589.1| hypothetical protein LOC102032 isoform 2 [Mu... 181 7e-46
Alignment gi|NP_001012685.2| hypothetical protein LOC102032 isoform 1 [Mu... 181 7e-46
>ref|NP_001139589.1| hypothetical protein LOC102032 isoform 2 [Mus musculus].
Length = 107
Score = 181 bits (460), Expect = 7e-46
Identities = 86/103 (83%), Positives = 97/103 (94%)
Frame = +2
Query: 227 YGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETLS 406
YGVM DDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKRKIMRIFSVPPT LS
Sbjct: 5 YGVMADDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRKIMRIFSVPPTEGMLS 64
Query: 407 EPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 535
EP+FYDT+S+IRLRQQ+E + +SRKY+YQQPQ+QADSVQLSLE
Sbjct: 65 EPSFYDTVSRIRLRQQVEAHPVSRKYEYQQPQSQADSVQLSLE 107
>ref|NP_001012685.2| hypothetical protein LOC102032 isoform 1 [Mus musculus].
Length = 112
Score = 181 bits (460), Expect = 7e-46
Identities = 86/103 (83%), Positives = 97/103 (94%)
Frame = +2
Query: 227 YGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETLS 406
YGVM DDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKRKIMRIFSVPPT LS
Sbjct: 10 YGVMADDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRKIMRIFSVPPTEGMLS 69
Query: 407 EPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 535
EP+FYDT+S+IRLRQQ+E + +SRKY+YQQPQ+QADSVQLSLE
Sbjct: 70 EPSFYDTVSRIRLRQQVEAHPVSRKYEYQQPQSQADSVQLSLE 112
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,524,261
Number of extensions: 687335
Number of successful extensions: 2555
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2550
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012556
(1106 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129146.1| hypothetical protein LOC114926 [Homo sapiens]. 204 9e-53
Alignment gi|NP_612445.2| hypothetical protein LOC114926 [Homo sapiens]. 204 9e-53
Alignment gi|NP_001129147.1| hypothetical protein LOC114926 [Homo sapiens]. 204 9e-53
Alignment gi|NP_001129148.1| hypothetical protein LOC114926 [Homo sapiens]. 204 9e-53
>ref|NP_001129146.1| hypothetical protein LOC114926 [Homo sapiens].
Length = 107
Score = 204 bits (520), Expect = 9e-53
Identities = 99/104 (95%), Positives = 103/104 (99%)
Frame = +2
Query: 224 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 403
GYGVMGDDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKR+IMRIFSVPPT ETL
Sbjct: 4 GYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETL 63
Query: 404 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 535
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>ref|NP_612445.2| hypothetical protein LOC114926 [Homo sapiens].
Length = 107
Score = 204 bits (520), Expect = 9e-53
Identities = 99/104 (95%), Positives = 103/104 (99%)
Frame = +2
Query: 224 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 403
GYGVMGDDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKR+IMRIFSVPPT ETL
Sbjct: 4 GYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETL 63
Query: 404 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 535
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>ref|NP_001129147.1| hypothetical protein LOC114926 [Homo sapiens].
Length = 107
Score = 204 bits (520), Expect = 9e-53
Identities = 99/104 (95%), Positives = 103/104 (99%)
Frame = +2
Query: 224 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 403
GYGVMGDDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKR+IMRIFSVPPT ETL
Sbjct: 4 GYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETL 63
Query: 404 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 535
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>ref|NP_001129148.1| hypothetical protein LOC114926 [Homo sapiens].
Length = 107
Score = 204 bits (520), Expect = 9e-53
Identities = 99/104 (95%), Positives = 103/104 (99%)
Frame = +2
Query: 224 GYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFGLFMYAKRNKRKIMRIFSVPPTAETL 403
GYGVMGDDGS+DY+VHEAWNEATNVYL+VILVSFGLFMYAKRNKR+IMRIFSVPPT ETL
Sbjct: 4 GYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETL 63
Query: 404 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 535
SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 64 SEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,427,834
Number of extensions: 803323
Number of successful extensions: 2995
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2992
Number of HSP's successfully gapped: 4
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012556
(1106 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 458 e-126
>Sscrofa_Chr17
|| Length = 69701581
Score = 458 bits (231), Expect = e-126
Identities = 231/231 (100%)
Strand = Plus / Minus
Query: 706 ttaaattgcatctccaaatcatttgttacataaatttaaaaggcctcaaaagacctgaat 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12814974 ttaaattgcatctccaaatcatttgttacataaatttaaaaggcctcaaaagacctgaat 12814915
Query: 766 gcagagattctgcctatacctaacgaggatcgatggtgatttcaccatgggaggacgttt 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12814914 gcagagattctgcctatacctaacgaggatcgatggtgatttcaccatgggaggacgttt 12814855
Query: 826 cgtttcttcaggatacaatcagaaataaaaacacatccttggaagccagagtctagagct 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12814854 cgtttcttcaggatacaatcagaaataaaaacacatccttggaagccagagtctagagct 12814795
Query: 886 gaggccacctcgatttgaactttttttgccaaattaaaaaataaaaatctt 936
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12814794 gaggccacctcgatttgaactttttttgccaaattaaaaaataaaaatctt 12814744
Score = 297 bits (150), Expect = 7e-78
Identities = 165/170 (97%)
Strand = Plus / Minus
Query: 41 aaagacctggctccttgttccatccggaagccaacaggccgagcggaaatgacgaagcag 100
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 12830650 aaagacctggctccttgttccatccggaagccaacgggccggcaggaaatgacgaagcag 12830591
Query: 101 aggtcgtccgggtccgttcggtaaccggctccgcgcgtccggccgcaactgcgggggaag 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12830590 aggtcgtccgggtccgttcggtaaccggctccgcgcgtccggccgcaactgcgggggaag 12830531
Query: 161 gagccccgagcagagcagcccagcctcgcgccgcctgcggagcgagcagc 210
|||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 12830530 gagccccgagcagaacagcccagcctcgcgccgcctgcggagcgagcagc 12830481
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 474 caagaaagtatgattatcagcagccacagaaccaagctgacagtgtacagctgtcactgg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5524126 caagaaagtatgattatcagcagccacagaaccaagctgacagtgtacagctgtcactgg 5524185
Query: 534 aatgaaatctcagaaaatgagcaacagaagtgatcattgttcaagcgtatggtctcctca 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5524186 aatgaaatctcagaaaatgagcaacagaagtgatcattgttcaagcgtatggtctcctca 5524245
Query: 594 ttctactaaatcatcaatgcc 614
|||||||||||||||||||||
Sbjct: 5524246 ttctactaaatcatcaatgcc 5524266
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 474 caagaaagtatgattatcagcagccacagaaccaagctgacagtgtacagctgtcactgg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12815206 caagaaagtatgattatcagcagccacagaaccaagctgacagtgtacagctgtcactgg 12815147
Query: 534 aatgaaatctcagaaaatgagcaacagaagtgatcattgttcaagcgtatggtctcctca 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12815146 aatgaaatctcagaaaatgagcaacagaagtgatcattgttcaagcgtatggtctcctca 12815087
Query: 594 ttctactaaatcatcaatgcc 614
|||||||||||||||||||||
Sbjct: 12815086 ttctactaaatcatcaatgcc 12815066
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 211 ccccatgcctgcaggttacggagtaatgggtgacgatggttccatggattacagtgttca 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12823972 ccccatgcctgcaggttacggagtaatgggtgacgatggttccatggattacagtgttca 12823913
Query: 271 cgaggcctggaatgaagccaccaacgtttacctggtcgtgatccttgtcagctttgggct 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12823912 cgaggcctggaatgaagccaccaacgtttacctggtcgtgatccttgtcagctttgggct 12823853
Query: 331 cttcatgtatgccaagagg 349
|||||||||||||||||||
Sbjct: 12823852 cttcatgtatgccaagagg 12823834
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 347 aggaataaaagaaaaattatgaggatattcagtgtgccgcctacagcagaaactttgtca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12820451 aggaataaaagaaaaattatgaggatattcagtgtgccgcctacagcagaaactttgtca 12820392
Query: 407 gagcccaacttttatgacacaataagtaaaattcgtctaagacagcaactggaaatgtat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12820391 gagcccaacttttatgacacaataagtaaaattcgtctaagacagcaactggaaatgtat 12820332
Query: 467 tccattt 473
|||||||
Sbjct: 12820331 tccattt 12820325
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,671,576
Number of extensions: 873
Number of successful extensions: 873
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 6
Length of query: 1106
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1085
Effective length of database: 2,808,413,156
Effective search space: 3047128274260
Effective search space used: 3047128274260
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)