Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012557
(1975 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539993.2| PREDICTED: similar to transmembrane protein 66 ... 530 e-150
>ref|XP_539993.2| PREDICTED: similar to transmembrane protein 66 [Canis familiaris].
Length = 336
Score = 530 bits (1364), Expect = e-150
Identities = 251/313 (80%), Positives = 268/313 (85%)
Frame = +3
Query: 276 IAGPTRGWNDPDRILLRDIKALTLHYDRYTTSRRLDPIPQLKCVGGTAGCDSYTPKVIQC 455
+AGP GWNDPDRILLRDIKALTLH+DRYTTSRRLDPIPQLKCVGGTAGCDSYTPKVIQC
Sbjct: 24 LAGPALGWNDPDRILLRDIKALTLHHDRYTTSRRLDPIPQLKCVGGTAGCDSYTPKVIQC 83
Query: 456 QNKGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYDSSEDQYVLRGSCGLEYNLDYTELGL 635
QNKGWDGYDVQWECKTDLD+AYKFGKT+VSCEGY+ SEDQYVLRGSCGLEYNLDYTELGL
Sbjct: 84 QNKGWDGYDVQWECKTDLDIAYKFGKTMVSCEGYEFSEDQYVLRGSCGLEYNLDYTELGL 143
Query: 636 RKLRESGENHGFNSFSNYYNKLYSPDSCSISGVITIVLLLAIAFGVYKFFLSDGQDXXXX 815
+KLRESG+NHGFNSFSNYY+KLYSPDS I G+ITI++LLAIA+GVYK FLSDGQD
Sbjct: 144 KKLRESGKNHGFNSFSNYYDKLYSPDSSGIRGLITILVLLAIAYGVYKLFLSDGQDSPPP 203
Query: 816 XXXXXXXXHRYQRFTNSAGPPPPGFKSEFTGPHGATSGFGSAFTGQQGHENSXXXXXXXX 995
+ YQRFTNSAGPPP GFKSE+TGPHGATSGFGSAFTGQQG +NS
Sbjct: 204 YSEYPPNSYHYQRFTNSAGPPPSGFKSEYTGPHGATSGFGSAFTGQQGFDNSGPGFWTGL 263
Query: 996 XXXXXXXXXXXSNRAATPFSDSWYYPAHPPSYTSTWNSRAYSPLRGGPGSYSACSSSEPR 1175
SNRAATPFSDSWYYP+HPPSY+STWNSRAYSPLRG GSYSA SSSE R
Sbjct: 264 GTGGILGYLFGSNRAATPFSDSWYYPSHPPSYSSTWNSRAYSPLRGTSGSYSASSSSETR 323
Query: 1176 TRTASGYGGTRRR 1214
TRTASGYGGTRRR
Sbjct: 324 TRTASGYGGTRRR 336
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,069,180
Number of extensions: 1917691
Number of successful extensions: 6267
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6255
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 549
Effective length of database: 15,240,880
Effective search space: 8367243120
Effective search space used: 8367243120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012557
(1975 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070324.1| transmembrane protein 66 precursor [Bos taur... 517 e-146
>ref|NP_001070324.1| transmembrane protein 66 precursor [Bos taurus].
Length = 335
Score = 517 bits (1332), Expect = e-146
Identities = 246/313 (78%), Positives = 268/313 (85%)
Frame = +3
Query: 276 IAGPTRGWNDPDRILLRDIKALTLHYDRYTTSRRLDPIPQLKCVGGTAGCDSYTPKVIQC 455
+ G + W++ DRILLRDIKALTL+YDRYTTSRRL+PIPQLKCVGGTAGCDSYTPKVIQC
Sbjct: 24 VVGTAQCWDERDRILLRDIKALTLYYDRYTTSRRLEPIPQLKCVGGTAGCDSYTPKVIQC 83
Query: 456 QNKGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYDSSEDQYVLRGSCGLEYNLDYTELGL 635
QN+GWDGYDVQWECKTDLDVAYKFGKTVVSCEGY+SSEDQYVLRGSCGLEY LDYTELGL
Sbjct: 84 QNRGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYESSEDQYVLRGSCGLEYQLDYTELGL 143
Query: 636 RKLRESGENHGFNSFSNYYNKLYSPDSCSISGVITIVLLLAIAFGVYKFFLSDGQDXXXX 815
+KLRESG+ HGFNSFSNYY+KLYSP+S S+ GV+TIV+LLAIAFGVYKFFLSDG +
Sbjct: 144 KKLRESGKEHGFNSFSNYYSKLYSPESSSLGGVVTIVVLLAIAFGVYKFFLSDGHESPPP 203
Query: 816 XXXXXXXXHRYQRFTNSAGPPPPGFKSEFTGPHGATSGFGSAFTGQQGHENSXXXXXXXX 995
HRYQRF++SAGPPP GFKSEFTGPHGAT+GFGSAFTGQQGHE+S
Sbjct: 204 YSEDPPYSHRYQRFSSSAGPPPAGFKSEFTGPHGATAGFGSAFTGQQGHEHSGPGFWTGL 263
Query: 996 XXXXXXXXXXXSNRAATPFSDSWYYPAHPPSYTSTWNSRAYSPLRGGPGSYSACSSSEPR 1175
SNRAATPFSDSW YP++PPSYTSTWNSRAYSPLRGGPGS SACS SEPR
Sbjct: 264 GTGGILGYLFGSNRAATPFSDSW-YPSYPPSYTSTWNSRAYSPLRGGPGSSSACSGSEPR 322
Query: 1176 TRTASGYGGTRRR 1214
TRTASGYGGTRRR
Sbjct: 323 TRTASGYGGTRRR 335
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,078,642
Number of extensions: 1872832
Number of successful extensions: 6202
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6196
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 549
Effective length of database: 14,074,782
Effective search space: 7727055318
Effective search space used: 7727055318
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012557
(1975 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924810.1| PREDICTED: transmembrane protein 66 [Sus scr... 604 e-173
>ref|XP_001924810.1| PREDICTED: transmembrane protein 66 [Sus scrofa].
Length = 336
Score = 604 bits (1558), Expect = e-173
Identities = 288/325 (88%), Positives = 288/325 (88%)
Frame = +3
Query: 240 CCPFFGXXXXXXIAGPTRGWNDPDRILLRDIKALTLHYDRYTTSRRLDPIPQLKCVGGTA 419
CCPFFG IAGPTRGWNDPDRILLRDIKALTLHYDRYTTSRRLDPIPQLKCVGGTA
Sbjct: 12 CCPFFGLLLLLLIAGPTRGWNDPDRILLRDIKALTLHYDRYTTSRRLDPIPQLKCVGGTA 71
Query: 420 GCDSYTPKVIQCQNKGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYDSSEDQYVLRGSCG 599
GCDSYTPKVIQCQNKGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYDSSEDQYVLRGSCG
Sbjct: 72 GCDSYTPKVIQCQNKGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYDSSEDQYVLRGSCG 131
Query: 600 LEYNLDYTELGLRKLRESGENHGFNSFSNYYNKLYSPDSCSISGVITIVLLLAIAFGVYK 779
LEYNLDYTELGLRKLRESGENHGFNSFSNYYNKLYSPDSCSISGVITIVLLLAIAFGVYK
Sbjct: 132 LEYNLDYTELGLRKLRESGENHGFNSFSNYYNKLYSPDSCSISGVITIVLLLAIAFGVYK 191
Query: 780 FFLSDGQDXXXXXXXXXXXXHRYQRFTNSAGPPPPGFKSEFTGPHGATSGFGSAFTGQQG 959
FFLSDGQD HRYQRFTNSAGPPPPGFKSEFTGPHGATSGFGSAFTGQQG
Sbjct: 192 FFLSDGQDPPPPYSEYPPYSHRYQRFTNSAGPPPPGFKSEFTGPHGATSGFGSAFTGQQG 251
Query: 960 HENSXXXXXXXXXXXXXXXXXXXSNRAATPFSDSWYYPAHPPSYTSTWNSRAYSPLRGGP 1139
HENS SNRAATPFSDSWYYPAHPPSYTSTWNSRAYSPLRGGP
Sbjct: 252 HENSGPGFWTGLGTGGILGYLFGSNRAATPFSDSWYYPAHPPSYTSTWNSRAYSPLRGGP 311
Query: 1140 GSYSACSSSEPRTRTASGYGGTRRR 1214
GSYSACSSSEPRTRTASGYGGTRRR
Sbjct: 312 GSYSACSSSEPRTRTASGYGGTRRR 336
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,793,475
Number of extensions: 1216028
Number of successful extensions: 3945
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3942
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 553
Effective length of database: 8,729,747
Effective search space: 4827550091
Effective search space used: 4827550091
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012557
(1975 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080708.3| transmembrane protein 66 [Mus musculus]. 451 e-126
>ref|NP_080708.3| transmembrane protein 66 [Mus musculus].
Length = 363
Score = 451 bits (1159), Expect = e-126
Identities = 222/328 (67%), Positives = 251/328 (76%), Gaps = 4/328 (1%)
Frame = +3
Query: 243 CPFFGXXXXXXIAGPTRGWNDPDRILLRDIKALTLHYDRYTTSRRLDPIPQLKCVGGTAG 422
CP +AGP GWNDPDRILLRD+KALTL+ DRYTTSRRLDPIPQLKCVGGTAG
Sbjct: 43 CPLLLLLSLLLVAGPALGWNDPDRILLRDVKALTLYSDRYTTSRRLDPIPQLKCVGGTAG 102
Query: 423 CDSYTPKVIQCQNKGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYDSSEDQYVLRGSCGL 602
C++YTP+VIQCQNKGWDGYDVQWECKTDLD+AYKFGKTVVSCEGY+SSEDQYVLRGSCGL
Sbjct: 103 CEAYTPRVIQCQNKGWDGYDVQWECKTDLDIAYKFGKTVVSCEGYESSEDQYVLRGSCGL 162
Query: 603 EYNLDYTELGLRKLRESGENHGFNSFSNYYNKLYSPDSCSISGVITIVLLLAIAFGVYKF 782
EYNLDYTELGL+KL+ESG++ G FS+YY+KLYS DSC G ITI +L +AF VYK
Sbjct: 163 EYNLDYTELGLKKLKESGKHQG---FSDYYHKLYSSDSC---GFITIAVLFVLAFAVYKL 216
Query: 783 FLSDGQDXXXXXXXXXXXXHRYQRFTNSAGPPPPGFKSEFTGP----HGATSGFGSAFTG 950
FLSDGQ QRF ++AG PPPGFKSEFTGP +GA+SGFGSAF G
Sbjct: 217 FLSDGQGSPPPYSEHPPYSEHSQRFASAAGAPPPGFKSEFTGPQNTGYGASSGFGSAF-G 275
Query: 951 QQGHENSXXXXXXXXXXXXXXXXXXXSNRAATPFSDSWYYPAHPPSYTSTWNSRAYSPLR 1130
QG+ +S SNRAATPFSDSWY+PA+PPS++ WNSRAYSPL
Sbjct: 276 GQGYGSSGPGFWSGLGAGGLLGYLFGSNRAATPFSDSWYHPAYPPSHSGAWNSRAYSPLG 335
Query: 1131 GGPGSYSACSSSEPRTRTASGYGGTRRR 1214
GG GSY A S+++ RTRTASGYGGTRRR
Sbjct: 336 GGAGSYCASSNADSRTRTASGYGGTRRR 363
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,199,692
Number of extensions: 1614614
Number of successful extensions: 4861
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4853
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 550
Effective length of database: 12,373,671
Effective search space: 6805519050
Effective search space used: 6805519050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012557
(1975 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057211.4| transmembrane protein 66 precursor [Homo sapien... 509 e-144
>ref|NP_057211.4| transmembrane protein 66 precursor [Homo sapiens].
Length = 339
Score = 509 bits (1310), Expect = e-144
Identities = 246/328 (75%), Positives = 264/328 (80%), Gaps = 4/328 (1%)
Frame = +3
Query: 243 CPFFGXXXXXXIAGPTRGWNDPDRILLRDIKALTLHYDRYTTSRRLDPIPQLKCVGGTAG 422
C G AGP GWNDPDR+LLRD+KALTLHYDRYTTSRRLDPIPQLKCVGGTAG
Sbjct: 13 CLLLGLHLFLLTAGPALGWNDPDRMLLRDVKALTLHYDRYTTSRRLDPIPQLKCVGGTAG 72
Query: 423 CDSYTPKVIQCQNKGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYDSSEDQYVLRGSCGL 602
CDSYTPKVIQCQNKGWDGYDVQWECKTDLD+AYKFGKTVVSCEGY+SSEDQYVLRGSCGL
Sbjct: 73 CDSYTPKVIQCQNKGWDGYDVQWECKTDLDIAYKFGKTVVSCEGYESSEDQYVLRGSCGL 132
Query: 603 EYNLDYTELGLRKLRESGENHGFNSFSNYYNKLYSPDSCSISGVITIVLLLAIAFGVYKF 782
EYNLDYTELGL+KL+ESG+ HGF SFS+YY K S DSC++SG+ITIV+LL IAF VYK
Sbjct: 133 EYNLDYTELGLQKLKESGKQHGFASFSDYYYKWSSADSCNMSGLITIVVLLGIAFVVYKL 192
Query: 783 FLSDGQDXXXXXXXXXXXXHRYQRFTNSAGPPPPGFKSEFTGP----HGATSGFGSAFTG 950
FLSDGQ HRYQRFTNSAGPPPPGFKSEFTGP HGATSGFGSAFTG
Sbjct: 193 FLSDGQYSPPPYSEYPPFSHRYQRFTNSAGPPPPGFKSEFTGPQNTGHGATSGFGSAFTG 252
Query: 951 QQGHENSXXXXXXXXXXXXXXXXXXXSNRAATPFSDSWYYPAHPPSYTSTWNSRAYSPLR 1130
QQG+ENS SNRAATPFSDSWYYP++PPSY TWN RAYSPL
Sbjct: 253 QQGYENSGPGFWTGLGTGGILGYLFGSNRAATPFSDSWYYPSYPPSYPGTWN-RAYSPLH 311
Query: 1131 GGPGSYSACSSSEPRTRTASGYGGTRRR 1214
GG GSYS CS+S+ +TRTASGYGGTRRR
Sbjct: 312 GGSGSYSVCSNSDTKTRTASGYGGTRRR 339
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,884,119
Number of extensions: 1903476
Number of successful extensions: 5851
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5841
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 549
Effective length of database: 14,704,088
Effective search space: 8072544312
Effective search space used: 8072544312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012557
(1975 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1409 0.0
Sscrofa_Chr13 210 2e-51
>Sscrofa_Chr15
|| Length = 157681621
Score = 1409 bits (711), Expect = 0.0
Identities = 750/763 (98%), Gaps = 3/763 (0%)
Strand = Plus / Plus
Query: 1190 aggatatggtggtacccgaagacgatgagaaaagtacaaagctggggtcaaacactggat 1249
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 62348771 aggatatggtggtacccgaagacgatgagaaaagtacaaagttggggtcaaacactggat 62348830
Query: 1250 gcagaatttctgatttttcatcactttctcttaaaaactacctaacaaggacacatgcaa 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62348831 gcagaatttctgatttttcatcactttctcttaaaaactacctaacaaggacacatgcaa 62348890
Query: 1310 aagttctgtggtgttttgtcctgtacagctttttgtatcctgttatttgagactaagagg 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62348891 aagttctgtggtgttttgtcctgtacagctttttgtatcctgttatttgagactaagagg 62348950
Query: 1370 tgacatgacaaaatgcttatgtagagaattgtatgtttgtgtaacctgcagatgtatatt 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62348951 tgacatgacaaaatgcttatgtagagaattgtatgtttgtgtaacctgcagatgtatatt 62349010
Query: 1430 agtttttggaagtgatgactactgtgaaatgctgagaatgtgttgtgtaatttctaaaac 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62349011 agtttttggaagtgatgactactgtgaaatgctgagaatgtgttgtgtaatttctaaaac 62349070
Query: 1490 ttgtgatgccataagatgcaagtctttataccagtaataccaatagccactgagtataga 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62349071 ttgtgatgccataagatgcaagtctttataccagtaataccaatagccactgagtataga 62349130
Query: 1550 aattttcaatcttaggtggctttaactgatgagttgttatgtcatagaaatgatagtaat 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62349131 aattttcaatcttaggtggctttaactgatgagttgttatgtcatagaaatgatagtaat 62349190
Query: 1610 ctatttggtacgtattattgggtgtttgctgttcgccaaacatttaaaccaagctttgga 1669
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 62349191 ctatttggtacgtattattgngtgtttgctgttcgccaaacatttaaaccaagctttgga 62349250
Query: 1670 ctaccaacttacacttacctatgtgtgttgatcacttctgaactcaggtgggtcgggttc 1729
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 62349251 ctaccaacttacacttacctatgtgtgttgatcacttctgaactcaagtgggtcgggttc 62349310
Query: 1730 tggtaagagagaattccttttttaggaaaaggtagaaaatatctatctagaagatcgtga 1789
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 62349311 tggtaagagagaattccttttttaag-aaaggtagaaaatatctatctagaagatcgtga 62349369
Query: 1790 atgattgtgtgccgacagaaatgcttgaaacttccacattcannnnnnnnaagaggtgaa 1849
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 62349370 atgattgtgtgccgacagaaatgcttgaaacttccacattca--ttttttaagaggtgaa 62349427
Query: 1850 gttgaagtgcttcagtaagggttttctaatagctaaagcatgcagttcgctgtggaatct 1909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62349428 gttgaagtgcttcagtaagggttttctaatagctaaagcatgcagttcgctgtggaatct 62349487
Query: 1910 gaagtgttgtaacagcctgtttcaatcttatattaaaatgaca 1952
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62349488 gaagtgttgtaacagcctgtttcaatcttatattaaaatgaca 62349530
Score = 839 bits (423), Expect = 0.0
Identities = 423/423 (100%)
Strand = Plus / Plus
Query: 485 acagtgggaatgtaagactgacttagatgttgcgtacaaatttggaaaaactgtggtgag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62341741 acagtgggaatgtaagactgacttagatgttgcgtacaaatttggaaaaactgtggtgag 62341800
Query: 545 ctgtgaaggctatgactcctctgaagaccagtatgtgctaagaggttcctgtggtttgga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62341801 ctgtgaaggctatgactcctctgaagaccagtatgtgctaagaggttcctgtggtttgga 62341860
Query: 605 gtataacttagattacacagaactcggcctgaggaaattgagagagtctggagaaaacca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62341861 gtataacttagattacacagaactcggcctgaggaaattgagagagtctggagaaaacca 62341920
Query: 665 tggctttaattctttctctaattattataataagttgtactccccagattcctgtagcat 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62341921 tggctttaattctttctctaattattataataagttgtactccccagattcctgtagcat 62341980
Query: 725 cagtggcgtgattaccattgtgctgctacttgctatcgcctttggagtttataaattctt 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62341981 cagtggcgtgattaccattgtgctgctacttgctatcgcctttggagtttataaattctt 62342040
Query: 785 ccttagtgatggtcaggatcctcctccaccatattctgagtatcctccatattcccatcg 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62342041 ccttagtgatggtcaggatcctcctccaccatattctgagtatcctccatattcccatcg 62342100
Query: 845 ttatcagaggttcaccaactcggcaggaccccctcctccaggcttcaagtctgagttcac 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62342101 ttatcagaggttcaccaactcggcaggaccccctcctccaggcttcaagtctgagttcac 62342160
Query: 905 agg 907
|||
Sbjct: 62342161 agg 62342163
Score = 589 bits (297), Expect = e-165
Identities = 303/305 (99%)
Strand = Plus / Plus
Query: 5 attcctgttcccccacgcgcctcagcggcagtgacgttagacaggcgcaccgaccttcct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62330469 attcctgttcccccacgcgcctcagcggcagtgacgttagacaggcgcaccgaccttcct 62330528
Query: 65 tgaggctgcgggtctacggagagatcgtcttctctccgcggcccgagctgcggtttcgtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 62330529 tgaggctgcgggtctacggagagatcgtcttctctccgcggcccgagctgcagtttcgtt 62330588
Query: 125 gcgtagggcctcgcggatttccgcagcctggggttctggcccgcgagcaccccgcagctg 184
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 62330589 gcgtagggcctcgcggatttccgcagcctggtgttctggcccgcgagcaccccgcagctg 62330648
Query: 185 cgcgccatcttcaccaagcgccatggcggcggccggcgggccgaaagcgaccagatgctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62330649 cgcgccatcttcaccaagcgccatggcggcggccggcgggccgaaagcgaccagatgctg 62330708
Query: 245 ccctttcttcggtctccttttgcttctgctgatcgcgggccctacccggggctggaacga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62330709 ccctttcttcggtctccttttgcttctgctgatcgcgggccctacccggggctggaacga 62330768
Query: 305 ccctg 309
|||||
Sbjct: 62330769 ccctg 62330773
Score = 357 bits (180), Expect = 2e-95
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 309 gacagaatattgttgagggatataaaagctctcaccctccactatgaccgctataccact 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62337486 gacagaatattgttgagggatataaaagctctcaccctccactatgaccgctataccact 62337545
Query: 369 tcccgtaggttggatcccatcccacagttgaagtgtgttggaggcacagctggatgtgat 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62337546 tcccgtaggttggatcccatcccacagttgaagtgtgttggaggcacagctggatgtgat 62337605
Query: 429 tcttacaccccaaaggtcatacagtgtcagaacaaaggctgggatggttatgatgtacag 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62337606 tcttacaccccaaaggtcatacagtgtcagaacaaaggctgggatggttatgatgtacag 62337665
Score = 313 bits (158), Expect = 2e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 1035 agagcagcaacacccttctcagactcgtggtactacccagcacaccctccctcatacacc 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62345962 agagcagcaacacccttctcagactcgtggtactacccagcacaccctccctcatacacc 62346021
Query: 1095 agcacatggaatagccgggcttactcaccactacgtggaggcccaggcagctattcggcc 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62346022 agcacatggaatagccgggcttactcaccactacgtggaggcccaggcagctattcggcc 62346081
Query: 1155 tgttcaagctcagagccaagaaccagaacagcatcagg 1192
||||||||||||||||||||||||||||||||||||||
Sbjct: 62346082 tgttcaagctcagagccaagaaccagaacagcatcagg 62346119
Score = 254 bits (128), Expect = 2e-64
Identities = 131/132 (99%)
Strand = Plus / Plus
Query: 905 aggaccgcatggtgcaacttccggttttggcagtgcttttactggacaacaaggacatga 964
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62345239 aggacctcatggtgcaacttccggttttggcagtgcttttactggacaacaaggacatga 62345298
Query: 965 aaattcaggaccaggcttttggactggcttgggaactggaggaatattaggatatttgtt 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62345299 aaattcaggaccaggcttttggactggcttgggaactggaggaatattaggatatttgtt 62345358
Query: 1025 tggcagcaatag 1036
||||||||||||
Sbjct: 62345359 tggcagcaatag 62345370
>Sscrofa_Chr13
|| Length = 218635234
Score = 210 bits (106), Expect = 2e-51
Identities = 267/318 (83%), Gaps = 2/318 (0%)
Strand = Plus / Minus
Query: 367 cttcccgtaggttggatcccatcccacagttgaagtgtgttggaggcacagctggatgtg 426
||||| || |||||||||| |||||||||| ||| |||||||| ||| |||| ||||
Sbjct: 74394983 cttcctgtgggttggatccaatcccacagt-gaaatgtgttgggggcccagccaaatgtc 74394925
Query: 427 attcttacaccccaaaggtcatacagtgtcagaacaaaggctgggatggttatgatgtac 486
|| ||| ||||| || |||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 74394924 atgcttgtacccccaaattcatacagtgtcagaacaaaggctggaatggttacaatgtac 74394865
Query: 487 agtgggaatgtaagactgacttagatgttgcgtacaaatttggaaaaactgtggtgagct 546
|||||||||||| || | |||||| || ||||||||||| ||||||| || ||| ||
Sbjct: 74394864 agtgggaatgtacaacctatttagatactgtgtacaaatttgtaaaaactctgatgaact 74394805
Query: 547 gtgaaggctatgactcctctgaagaccagtatgtgctaagaggttcctgtggtttggagt 606
||| ||||| |||| ||||||||||||||||| | ||||||||||||||| | ||| |||
Sbjct: 74394804 gtggaggctttgacgcctctgaagaccagtatatactaagaggttcctgtagcttgaagt 74394745
Query: 607 ataacttagattacacagaactcggcctgaggaaattgagagag-tctggagaaaaccat 665
|||||| |||||||| ||| | ||||||| || |||||||||| | ||| |||||||||
Sbjct: 74394744 ataactcagattacatggaaattggcctgaagacattgagagagttttggggaaaaccat 74394685
Query: 666 ggctttaattctttctct 683
|||||||| |||||||||
Sbjct: 74394684 ggctttaactctttctct 74394667
Score = 61.9 bits (31), Expect = 1e-06
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 267 cttctgctgatcgcgggccctacccggggctggaacgaccctgacagaatattgttgagg 326
||||||||||| ||| | || || |||||||||||||||| || |||||||||||| |
Sbjct: 74395108 cttctgctgatttcggtctctgcctggggctggaacgacccagatagaatattgttgcag 74395049
Query: 327 gatataaaagctctcaccctccactatgacc 357
||| |||| |||| ||||||||||| ||||
Sbjct: 74395048 gatgtaaagactcttaccctccactaggacc 74395018
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 58,886,064
Number of extensions: 359
Number of successful extensions: 359
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 9
Length of query: 1975
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1953
Effective length of database: 2,808,408,574
Effective search space: 5484821945022
Effective search space used: 5484821945022
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)