Animal-Genome cDNA 20110601C-012557


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012557
         (1975 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_539993.2| PREDICTED: similar to transmembrane protein 66 ...   530   e-150

>ref|XP_539993.2| PREDICTED: similar to transmembrane protein 66 [Canis familiaris].
          Length = 336

 Score =  530 bits (1364), Expect = e-150
 Identities = 251/313 (80%), Positives = 268/313 (85%)
 Frame = +3

Query: 276  IAGPTRGWNDPDRILLRDIKALTLHYDRYTTSRRLDPIPQLKCVGGTAGCDSYTPKVIQC 455
            +AGP  GWNDPDRILLRDIKALTLH+DRYTTSRRLDPIPQLKCVGGTAGCDSYTPKVIQC
Sbjct: 24   LAGPALGWNDPDRILLRDIKALTLHHDRYTTSRRLDPIPQLKCVGGTAGCDSYTPKVIQC 83

Query: 456  QNKGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYDSSEDQYVLRGSCGLEYNLDYTELGL 635
            QNKGWDGYDVQWECKTDLD+AYKFGKT+VSCEGY+ SEDQYVLRGSCGLEYNLDYTELGL
Sbjct: 84   QNKGWDGYDVQWECKTDLDIAYKFGKTMVSCEGYEFSEDQYVLRGSCGLEYNLDYTELGL 143

Query: 636  RKLRESGENHGFNSFSNYYNKLYSPDSCSISGVITIVLLLAIAFGVYKFFLSDGQDXXXX 815
            +KLRESG+NHGFNSFSNYY+KLYSPDS  I G+ITI++LLAIA+GVYK FLSDGQD    
Sbjct: 144  KKLRESGKNHGFNSFSNYYDKLYSPDSSGIRGLITILVLLAIAYGVYKLFLSDGQDSPPP 203

Query: 816  XXXXXXXXHRYQRFTNSAGPPPPGFKSEFTGPHGATSGFGSAFTGQQGHENSXXXXXXXX 995
                    + YQRFTNSAGPPP GFKSE+TGPHGATSGFGSAFTGQQG +NS        
Sbjct: 204  YSEYPPNSYHYQRFTNSAGPPPSGFKSEYTGPHGATSGFGSAFTGQQGFDNSGPGFWTGL 263

Query: 996  XXXXXXXXXXXSNRAATPFSDSWYYPAHPPSYTSTWNSRAYSPLRGGPGSYSACSSSEPR 1175
                       SNRAATPFSDSWYYP+HPPSY+STWNSRAYSPLRG  GSYSA SSSE R
Sbjct: 264  GTGGILGYLFGSNRAATPFSDSWYYPSHPPSYSSTWNSRAYSPLRGTSGSYSASSSSETR 323

Query: 1176 TRTASGYGGTRRR 1214
            TRTASGYGGTRRR
Sbjct: 324  TRTASGYGGTRRR 336


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,069,180
Number of extensions: 1917691
Number of successful extensions: 6267
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6255
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 549
Effective length of database: 15,240,880
Effective search space: 8367243120
Effective search space used: 8367243120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012557
         (1975 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001070324.1| transmembrane protein 66 precursor [Bos taur...   517   e-146

>ref|NP_001070324.1| transmembrane protein 66 precursor [Bos taurus].
          Length = 335

 Score =  517 bits (1332), Expect = e-146
 Identities = 246/313 (78%), Positives = 268/313 (85%)
 Frame = +3

Query: 276  IAGPTRGWNDPDRILLRDIKALTLHYDRYTTSRRLDPIPQLKCVGGTAGCDSYTPKVIQC 455
            + G  + W++ DRILLRDIKALTL+YDRYTTSRRL+PIPQLKCVGGTAGCDSYTPKVIQC
Sbjct: 24   VVGTAQCWDERDRILLRDIKALTLYYDRYTTSRRLEPIPQLKCVGGTAGCDSYTPKVIQC 83

Query: 456  QNKGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYDSSEDQYVLRGSCGLEYNLDYTELGL 635
            QN+GWDGYDVQWECKTDLDVAYKFGKTVVSCEGY+SSEDQYVLRGSCGLEY LDYTELGL
Sbjct: 84   QNRGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYESSEDQYVLRGSCGLEYQLDYTELGL 143

Query: 636  RKLRESGENHGFNSFSNYYNKLYSPDSCSISGVITIVLLLAIAFGVYKFFLSDGQDXXXX 815
            +KLRESG+ HGFNSFSNYY+KLYSP+S S+ GV+TIV+LLAIAFGVYKFFLSDG +    
Sbjct: 144  KKLRESGKEHGFNSFSNYYSKLYSPESSSLGGVVTIVVLLAIAFGVYKFFLSDGHESPPP 203

Query: 816  XXXXXXXXHRYQRFTNSAGPPPPGFKSEFTGPHGATSGFGSAFTGQQGHENSXXXXXXXX 995
                    HRYQRF++SAGPPP GFKSEFTGPHGAT+GFGSAFTGQQGHE+S        
Sbjct: 204  YSEDPPYSHRYQRFSSSAGPPPAGFKSEFTGPHGATAGFGSAFTGQQGHEHSGPGFWTGL 263

Query: 996  XXXXXXXXXXXSNRAATPFSDSWYYPAHPPSYTSTWNSRAYSPLRGGPGSYSACSSSEPR 1175
                       SNRAATPFSDSW YP++PPSYTSTWNSRAYSPLRGGPGS SACS SEPR
Sbjct: 264  GTGGILGYLFGSNRAATPFSDSW-YPSYPPSYTSTWNSRAYSPLRGGPGSSSACSGSEPR 322

Query: 1176 TRTASGYGGTRRR 1214
            TRTASGYGGTRRR
Sbjct: 323  TRTASGYGGTRRR 335


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,078,642
Number of extensions: 1872832
Number of successful extensions: 6202
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6196
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 549
Effective length of database: 14,074,782
Effective search space: 7727055318
Effective search space used: 7727055318
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012557
         (1975 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001924810.1| PREDICTED: transmembrane protein 66 [Sus scr...   604   e-173

>ref|XP_001924810.1| PREDICTED: transmembrane protein 66 [Sus scrofa].
          Length = 336

 Score =  604 bits (1558), Expect = e-173
 Identities = 288/325 (88%), Positives = 288/325 (88%)
 Frame = +3

Query: 240  CCPFFGXXXXXXIAGPTRGWNDPDRILLRDIKALTLHYDRYTTSRRLDPIPQLKCVGGTA 419
            CCPFFG      IAGPTRGWNDPDRILLRDIKALTLHYDRYTTSRRLDPIPQLKCVGGTA
Sbjct: 12   CCPFFGLLLLLLIAGPTRGWNDPDRILLRDIKALTLHYDRYTTSRRLDPIPQLKCVGGTA 71

Query: 420  GCDSYTPKVIQCQNKGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYDSSEDQYVLRGSCG 599
            GCDSYTPKVIQCQNKGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYDSSEDQYVLRGSCG
Sbjct: 72   GCDSYTPKVIQCQNKGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYDSSEDQYVLRGSCG 131

Query: 600  LEYNLDYTELGLRKLRESGENHGFNSFSNYYNKLYSPDSCSISGVITIVLLLAIAFGVYK 779
            LEYNLDYTELGLRKLRESGENHGFNSFSNYYNKLYSPDSCSISGVITIVLLLAIAFGVYK
Sbjct: 132  LEYNLDYTELGLRKLRESGENHGFNSFSNYYNKLYSPDSCSISGVITIVLLLAIAFGVYK 191

Query: 780  FFLSDGQDXXXXXXXXXXXXHRYQRFTNSAGPPPPGFKSEFTGPHGATSGFGSAFTGQQG 959
            FFLSDGQD            HRYQRFTNSAGPPPPGFKSEFTGPHGATSGFGSAFTGQQG
Sbjct: 192  FFLSDGQDPPPPYSEYPPYSHRYQRFTNSAGPPPPGFKSEFTGPHGATSGFGSAFTGQQG 251

Query: 960  HENSXXXXXXXXXXXXXXXXXXXSNRAATPFSDSWYYPAHPPSYTSTWNSRAYSPLRGGP 1139
            HENS                   SNRAATPFSDSWYYPAHPPSYTSTWNSRAYSPLRGGP
Sbjct: 252  HENSGPGFWTGLGTGGILGYLFGSNRAATPFSDSWYYPAHPPSYTSTWNSRAYSPLRGGP 311

Query: 1140 GSYSACSSSEPRTRTASGYGGTRRR 1214
            GSYSACSSSEPRTRTASGYGGTRRR
Sbjct: 312  GSYSACSSSEPRTRTASGYGGTRRR 336


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,793,475
Number of extensions: 1216028
Number of successful extensions: 3945
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3942
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 553
Effective length of database: 8,729,747
Effective search space: 4827550091
Effective search space used: 4827550091
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012557
         (1975 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080708.3| transmembrane protein 66 [Mus musculus].             451   e-126

>ref|NP_080708.3| transmembrane protein 66 [Mus musculus].
          Length = 363

 Score =  451 bits (1159), Expect = e-126
 Identities = 222/328 (67%), Positives = 251/328 (76%), Gaps = 4/328 (1%)
 Frame = +3

Query: 243  CPFFGXXXXXXIAGPTRGWNDPDRILLRDIKALTLHYDRYTTSRRLDPIPQLKCVGGTAG 422
            CP         +AGP  GWNDPDRILLRD+KALTL+ DRYTTSRRLDPIPQLKCVGGTAG
Sbjct: 43   CPLLLLLSLLLVAGPALGWNDPDRILLRDVKALTLYSDRYTTSRRLDPIPQLKCVGGTAG 102

Query: 423  CDSYTPKVIQCQNKGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYDSSEDQYVLRGSCGL 602
            C++YTP+VIQCQNKGWDGYDVQWECKTDLD+AYKFGKTVVSCEGY+SSEDQYVLRGSCGL
Sbjct: 103  CEAYTPRVIQCQNKGWDGYDVQWECKTDLDIAYKFGKTVVSCEGYESSEDQYVLRGSCGL 162

Query: 603  EYNLDYTELGLRKLRESGENHGFNSFSNYYNKLYSPDSCSISGVITIVLLLAIAFGVYKF 782
            EYNLDYTELGL+KL+ESG++ G   FS+YY+KLYS DSC   G ITI +L  +AF VYK 
Sbjct: 163  EYNLDYTELGLKKLKESGKHQG---FSDYYHKLYSSDSC---GFITIAVLFVLAFAVYKL 216

Query: 783  FLSDGQDXXXXXXXXXXXXHRYQRFTNSAGPPPPGFKSEFTGP----HGATSGFGSAFTG 950
            FLSDGQ                QRF ++AG PPPGFKSEFTGP    +GA+SGFGSAF G
Sbjct: 217  FLSDGQGSPPPYSEHPPYSEHSQRFASAAGAPPPGFKSEFTGPQNTGYGASSGFGSAF-G 275

Query: 951  QQGHENSXXXXXXXXXXXXXXXXXXXSNRAATPFSDSWYYPAHPPSYTSTWNSRAYSPLR 1130
             QG+ +S                   SNRAATPFSDSWY+PA+PPS++  WNSRAYSPL 
Sbjct: 276  GQGYGSSGPGFWSGLGAGGLLGYLFGSNRAATPFSDSWYHPAYPPSHSGAWNSRAYSPLG 335

Query: 1131 GGPGSYSACSSSEPRTRTASGYGGTRRR 1214
            GG GSY A S+++ RTRTASGYGGTRRR
Sbjct: 336  GGAGSYCASSNADSRTRTASGYGGTRRR 363


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,199,692
Number of extensions: 1614614
Number of successful extensions: 4861
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4853
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 550
Effective length of database: 12,373,671
Effective search space: 6805519050
Effective search space used: 6805519050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012557
         (1975 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_057211.4| transmembrane protein 66 precursor [Homo sapien...   509   e-144

>ref|NP_057211.4| transmembrane protein 66 precursor [Homo sapiens].
          Length = 339

 Score =  509 bits (1310), Expect = e-144
 Identities = 246/328 (75%), Positives = 264/328 (80%), Gaps = 4/328 (1%)
 Frame = +3

Query: 243  CPFFGXXXXXXIAGPTRGWNDPDRILLRDIKALTLHYDRYTTSRRLDPIPQLKCVGGTAG 422
            C   G       AGP  GWNDPDR+LLRD+KALTLHYDRYTTSRRLDPIPQLKCVGGTAG
Sbjct: 13   CLLLGLHLFLLTAGPALGWNDPDRMLLRDVKALTLHYDRYTTSRRLDPIPQLKCVGGTAG 72

Query: 423  CDSYTPKVIQCQNKGWDGYDVQWECKTDLDVAYKFGKTVVSCEGYDSSEDQYVLRGSCGL 602
            CDSYTPKVIQCQNKGWDGYDVQWECKTDLD+AYKFGKTVVSCEGY+SSEDQYVLRGSCGL
Sbjct: 73   CDSYTPKVIQCQNKGWDGYDVQWECKTDLDIAYKFGKTVVSCEGYESSEDQYVLRGSCGL 132

Query: 603  EYNLDYTELGLRKLRESGENHGFNSFSNYYNKLYSPDSCSISGVITIVLLLAIAFGVYKF 782
            EYNLDYTELGL+KL+ESG+ HGF SFS+YY K  S DSC++SG+ITIV+LL IAF VYK 
Sbjct: 133  EYNLDYTELGLQKLKESGKQHGFASFSDYYYKWSSADSCNMSGLITIVVLLGIAFVVYKL 192

Query: 783  FLSDGQDXXXXXXXXXXXXHRYQRFTNSAGPPPPGFKSEFTGP----HGATSGFGSAFTG 950
            FLSDGQ             HRYQRFTNSAGPPPPGFKSEFTGP    HGATSGFGSAFTG
Sbjct: 193  FLSDGQYSPPPYSEYPPFSHRYQRFTNSAGPPPPGFKSEFTGPQNTGHGATSGFGSAFTG 252

Query: 951  QQGHENSXXXXXXXXXXXXXXXXXXXSNRAATPFSDSWYYPAHPPSYTSTWNSRAYSPLR 1130
            QQG+ENS                   SNRAATPFSDSWYYP++PPSY  TWN RAYSPL 
Sbjct: 253  QQGYENSGPGFWTGLGTGGILGYLFGSNRAATPFSDSWYYPSYPPSYPGTWN-RAYSPLH 311

Query: 1131 GGPGSYSACSSSEPRTRTASGYGGTRRR 1214
            GG GSYS CS+S+ +TRTASGYGGTRRR
Sbjct: 312  GGSGSYSVCSNSDTKTRTASGYGGTRRR 339


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,884,119
Number of extensions: 1903476
Number of successful extensions: 5851
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5841
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 549
Effective length of database: 14,704,088
Effective search space: 8072544312
Effective search space used: 8072544312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012557
         (1975 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                        1409   0.0  
Sscrofa_Chr13                                                         210   2e-51

>Sscrofa_Chr15 
||          Length = 157681621

 Score = 1409 bits (711), Expect = 0.0
 Identities = 750/763 (98%), Gaps = 3/763 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1190     aggatatggtggtacccgaagacgatgagaaaagtacaaagctggggtcaaacactggat 1249
                ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 62348771 aggatatggtggtacccgaagacgatgagaaaagtacaaagttggggtcaaacactggat 62348830

                                                                            
Query: 1250     gcagaatttctgatttttcatcactttctcttaaaaactacctaacaaggacacatgcaa 1309
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62348831 gcagaatttctgatttttcatcactttctcttaaaaactacctaacaaggacacatgcaa 62348890

                                                                            
Query: 1310     aagttctgtggtgttttgtcctgtacagctttttgtatcctgttatttgagactaagagg 1369
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62348891 aagttctgtggtgttttgtcctgtacagctttttgtatcctgttatttgagactaagagg 62348950

                                                                            
Query: 1370     tgacatgacaaaatgcttatgtagagaattgtatgtttgtgtaacctgcagatgtatatt 1429
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62348951 tgacatgacaaaatgcttatgtagagaattgtatgtttgtgtaacctgcagatgtatatt 62349010

                                                                            
Query: 1430     agtttttggaagtgatgactactgtgaaatgctgagaatgtgttgtgtaatttctaaaac 1489
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62349011 agtttttggaagtgatgactactgtgaaatgctgagaatgtgttgtgtaatttctaaaac 62349070

                                                                            
Query: 1490     ttgtgatgccataagatgcaagtctttataccagtaataccaatagccactgagtataga 1549
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62349071 ttgtgatgccataagatgcaagtctttataccagtaataccaatagccactgagtataga 62349130

                                                                            
Query: 1550     aattttcaatcttaggtggctttaactgatgagttgttatgtcatagaaatgatagtaat 1609
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62349131 aattttcaatcttaggtggctttaactgatgagttgttatgtcatagaaatgatagtaat 62349190

                                                                            
Query: 1610     ctatttggtacgtattattgggtgtttgctgttcgccaaacatttaaaccaagctttgga 1669
                |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 62349191 ctatttggtacgtattattgngtgtttgctgttcgccaaacatttaaaccaagctttgga 62349250

                                                                            
Query: 1670     ctaccaacttacacttacctatgtgtgttgatcacttctgaactcaggtgggtcgggttc 1729
                |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 62349251 ctaccaacttacacttacctatgtgtgttgatcacttctgaactcaagtgggtcgggttc 62349310

                                                                            
Query: 1730     tggtaagagagaattccttttttaggaaaaggtagaaaatatctatctagaagatcgtga 1789
                |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 62349311 tggtaagagagaattccttttttaag-aaaggtagaaaatatctatctagaagatcgtga 62349369

                                                                            
Query: 1790     atgattgtgtgccgacagaaatgcttgaaacttccacattcannnnnnnnaagaggtgaa 1849
                ||||||||||||||||||||||||||||||||||||||||||        ||||||||||
Sbjct: 62349370 atgattgtgtgccgacagaaatgcttgaaacttccacattca--ttttttaagaggtgaa 62349427

                                                                            
Query: 1850     gttgaagtgcttcagtaagggttttctaatagctaaagcatgcagttcgctgtggaatct 1909
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62349428 gttgaagtgcttcagtaagggttttctaatagctaaagcatgcagttcgctgtggaatct 62349487

                                                           
Query: 1910     gaagtgttgtaacagcctgtttcaatcttatattaaaatgaca 1952
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62349488 gaagtgttgtaacagcctgtttcaatcttatattaaaatgaca 62349530



 Score =  839 bits (423), Expect = 0.0
 Identities = 423/423 (100%)
 Strand = Plus / Plus

                                                                            
Query: 485      acagtgggaatgtaagactgacttagatgttgcgtacaaatttggaaaaactgtggtgag 544
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62341741 acagtgggaatgtaagactgacttagatgttgcgtacaaatttggaaaaactgtggtgag 62341800

                                                                            
Query: 545      ctgtgaaggctatgactcctctgaagaccagtatgtgctaagaggttcctgtggtttgga 604
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62341801 ctgtgaaggctatgactcctctgaagaccagtatgtgctaagaggttcctgtggtttgga 62341860

                                                                            
Query: 605      gtataacttagattacacagaactcggcctgaggaaattgagagagtctggagaaaacca 664
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62341861 gtataacttagattacacagaactcggcctgaggaaattgagagagtctggagaaaacca 62341920

                                                                            
Query: 665      tggctttaattctttctctaattattataataagttgtactccccagattcctgtagcat 724
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62341921 tggctttaattctttctctaattattataataagttgtactccccagattcctgtagcat 62341980

                                                                            
Query: 725      cagtggcgtgattaccattgtgctgctacttgctatcgcctttggagtttataaattctt 784
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62341981 cagtggcgtgattaccattgtgctgctacttgctatcgcctttggagtttataaattctt 62342040

                                                                            
Query: 785      ccttagtgatggtcaggatcctcctccaccatattctgagtatcctccatattcccatcg 844
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62342041 ccttagtgatggtcaggatcctcctccaccatattctgagtatcctccatattcccatcg 62342100

                                                                            
Query: 845      ttatcagaggttcaccaactcggcaggaccccctcctccaggcttcaagtctgagttcac 904
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62342101 ttatcagaggttcaccaactcggcaggaccccctcctccaggcttcaagtctgagttcac 62342160

                   
Query: 905      agg 907
                |||
Sbjct: 62342161 agg 62342163



 Score =  589 bits (297), Expect = e-165
 Identities = 303/305 (99%)
 Strand = Plus / Plus

                                                                            
Query: 5        attcctgttcccccacgcgcctcagcggcagtgacgttagacaggcgcaccgaccttcct 64
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62330469 attcctgttcccccacgcgcctcagcggcagtgacgttagacaggcgcaccgaccttcct 62330528

                                                                            
Query: 65       tgaggctgcgggtctacggagagatcgtcttctctccgcggcccgagctgcggtttcgtt 124
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 62330529 tgaggctgcgggtctacggagagatcgtcttctctccgcggcccgagctgcagtttcgtt 62330588

                                                                            
Query: 125      gcgtagggcctcgcggatttccgcagcctggggttctggcccgcgagcaccccgcagctg 184
                ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 62330589 gcgtagggcctcgcggatttccgcagcctggtgttctggcccgcgagcaccccgcagctg 62330648

                                                                            
Query: 185      cgcgccatcttcaccaagcgccatggcggcggccggcgggccgaaagcgaccagatgctg 244
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62330649 cgcgccatcttcaccaagcgccatggcggcggccggcgggccgaaagcgaccagatgctg 62330708

                                                                            
Query: 245      ccctttcttcggtctccttttgcttctgctgatcgcgggccctacccggggctggaacga 304
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62330709 ccctttcttcggtctccttttgcttctgctgatcgcgggccctacccggggctggaacga 62330768

                     
Query: 305      ccctg 309
                |||||
Sbjct: 62330769 ccctg 62330773



 Score =  357 bits (180), Expect = 2e-95
 Identities = 180/180 (100%)
 Strand = Plus / Plus

                                                                            
Query: 309      gacagaatattgttgagggatataaaagctctcaccctccactatgaccgctataccact 368
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62337486 gacagaatattgttgagggatataaaagctctcaccctccactatgaccgctataccact 62337545

                                                                            
Query: 369      tcccgtaggttggatcccatcccacagttgaagtgtgttggaggcacagctggatgtgat 428
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62337546 tcccgtaggttggatcccatcccacagttgaagtgtgttggaggcacagctggatgtgat 62337605

                                                                            
Query: 429      tcttacaccccaaaggtcatacagtgtcagaacaaaggctgggatggttatgatgtacag 488
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62337606 tcttacaccccaaaggtcatacagtgtcagaacaaaggctgggatggttatgatgtacag 62337665



 Score =  313 bits (158), Expect = 2e-82
 Identities = 158/158 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1035     agagcagcaacacccttctcagactcgtggtactacccagcacaccctccctcatacacc 1094
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62345962 agagcagcaacacccttctcagactcgtggtactacccagcacaccctccctcatacacc 62346021

                                                                            
Query: 1095     agcacatggaatagccgggcttactcaccactacgtggaggcccaggcagctattcggcc 1154
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62346022 agcacatggaatagccgggcttactcaccactacgtggaggcccaggcagctattcggcc 62346081

                                                      
Query: 1155     tgttcaagctcagagccaagaaccagaacagcatcagg 1192
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 62346082 tgttcaagctcagagccaagaaccagaacagcatcagg 62346119



 Score =  254 bits (128), Expect = 2e-64
 Identities = 131/132 (99%)
 Strand = Plus / Plus

                                                                            
Query: 905      aggaccgcatggtgcaacttccggttttggcagtgcttttactggacaacaaggacatga 964
                |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62345239 aggacctcatggtgcaacttccggttttggcagtgcttttactggacaacaaggacatga 62345298

                                                                            
Query: 965      aaattcaggaccaggcttttggactggcttgggaactggaggaatattaggatatttgtt 1024
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62345299 aaattcaggaccaggcttttggactggcttgggaactggaggaatattaggatatttgtt 62345358

                            
Query: 1025     tggcagcaatag 1036
                ||||||||||||
Sbjct: 62345359 tggcagcaatag 62345370


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  210 bits (106), Expect = 2e-51
 Identities = 267/318 (83%), Gaps = 2/318 (0%)
 Strand = Plus / Minus

                                                                            
Query: 367      cttcccgtaggttggatcccatcccacagttgaagtgtgttggaggcacagctggatgtg 426
                ||||| || |||||||||| |||||||||| ||| |||||||| ||| ||||   |||| 
Sbjct: 74394983 cttcctgtgggttggatccaatcccacagt-gaaatgtgttgggggcccagccaaatgtc 74394925

                                                                            
Query: 427      attcttacaccccaaaggtcatacagtgtcagaacaaaggctgggatggttatgatgtac 486
                || |||  ||||| ||  |||||||||||||||||||||||||| |||||||  ||||||
Sbjct: 74394924 atgcttgtacccccaaattcatacagtgtcagaacaaaggctggaatggttacaatgtac 74394865

                                                                            
Query: 487      agtgggaatgtaagactgacttagatgttgcgtacaaatttggaaaaactgtggtgagct 546
                ||||||||||||  ||  | ||||||  || ||||||||||| ||||||| || ||| ||
Sbjct: 74394864 agtgggaatgtacaacctatttagatactgtgtacaaatttgtaaaaactctgatgaact 74394805

                                                                            
Query: 547      gtgaaggctatgactcctctgaagaccagtatgtgctaagaggttcctgtggtttggagt 606
                ||| ||||| |||| ||||||||||||||||| | ||||||||||||||| | ||| |||
Sbjct: 74394804 gtggaggctttgacgcctctgaagaccagtatatactaagaggttcctgtagcttgaagt 74394745

                                                                            
Query: 607      ataacttagattacacagaactcggcctgaggaaattgagagag-tctggagaaaaccat 665
                |||||| ||||||||  ||| | ||||||| || |||||||||| | ||| |||||||||
Sbjct: 74394744 ataactcagattacatggaaattggcctgaagacattgagagagttttggggaaaaccat 74394685

                                  
Query: 666      ggctttaattctttctct 683
                |||||||| |||||||||
Sbjct: 74394684 ggctttaactctttctct 74394667



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 76/91 (83%)
 Strand = Plus / Minus

                                                                            
Query: 267      cttctgctgatcgcgggccctacccggggctggaacgaccctgacagaatattgttgagg 326
                |||||||||||  ||| | || || |||||||||||||||| || ||||||||||||  |
Sbjct: 74395108 cttctgctgatttcggtctctgcctggggctggaacgacccagatagaatattgttgcag 74395049

                                               
Query: 327      gatataaaagctctcaccctccactatgacc 357
                ||| ||||  |||| ||||||||||| ||||
Sbjct: 74395048 gatgtaaagactcttaccctccactaggacc 74395018


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 58,886,064
Number of extensions: 359
Number of successful extensions: 359
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 9
Length of query: 1975
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1953
Effective length of database: 2,808,408,574
Effective search space: 5484821945022
Effective search space used: 5484821945022
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)