Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012561
(2364 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070371.1| phosphoglucomutase-1 [Bos taurus]. 1053 0.0
Alignment gi|NP_001095805.1| phosphoglucomutase-like protein 5 [Bos tauru... 749 0.0
Alignment gi|XP_002705027.1| PREDICTED: phosphoglucomutase 5-like [Bos ta... 457 e-128
>ref|NP_001070371.1| phosphoglucomutase-1 [Bos taurus].
Length = 562
Score = 1053 bits (2722), Expect = 0.0
Identities = 532/562 (94%), Positives = 537/562 (95%)
Frame = +1
Query: 70 MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 249
MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSS+NYAENFIQSIISTVEPA RQEATLVVG
Sbjct: 1 MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSSNYAENFIQSIISTVEPAQRQEATLVVG 60
Query: 250 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 429
GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSC LTASHNP
Sbjct: 61 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNP 120
Query: 430 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 609
GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDL VDLGVLGKQQFDLENK
Sbjct: 121 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLHVDLGVLGKQQFDLENK 180
Query: 610 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 789
FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE
Sbjct: 181 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 240
Query: 790 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 969
LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEH RNMILGKH
Sbjct: 241 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHDFGAAFDGDGDRNMILGKH 300
Query: 970 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1149
GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK
Sbjct: 301 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 360
Query: 1150 FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKY 1329
FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKY
Sbjct: 361 FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKY 420
Query: 1330 GRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPV 1509
GRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPV
Sbjct: 421 GRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPV 480
Query: 1510 DGSISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLI 1689
DGSISRNQGLR++FADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLI
Sbjct: 481 DGSISRNQGLRLLFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLI 540
Query: 1690 SIALKMSQLQERTGRTAPTVIT 1755
SIALK+SQLQE+TGRTAPTVIT
Sbjct: 541 SIALKVSQLQEKTGRTAPTVIT 562
>ref|NP_001095805.1| phosphoglucomutase-like protein 5 [Bos taurus].
Length = 567
Score = 749 bits (1935), Expect = 0.0
Identities = 351/562 (62%), Positives = 451/562 (80%), Gaps = 1/562 (0%)
Frame = +1
Query: 73 VKIVTVKTKAYQDQKP-GTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 249
+ ++TV T Y+DQ+P G GLR+ +F+ NY NFIQS++S+++ RQ T+VVG
Sbjct: 6 IPVLTVPTAPYEDQRPAGGGGLRRPTGLFEGQRNYLPNFIQSVLSSIDLRDRQGCTMVVG 65
Query: 250 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 429
DGR++ + A +++V++AAANGIGRL+IGQNGILSTPAVSC LTASH P
Sbjct: 66 SDGRYFSRTATEIVVQMAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCP 125
Query: 430 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 609
GGP G+FG+KFN++NGGPAP+ ++DKI+QISKTIEEY ICPDL++DL LG+Q+FDLENK
Sbjct: 126 GGPGGEFGVKFNVANGGPAPDVVSDKIYQISKTIEEYTICPDLRIDLSRLGRQEFDLENK 185
Query: 610 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 789
FKPF VEIVD V+ Y +LR IFDFNA+K LL+GP +LKIR+DAMHGV+GPYV+K+LC+E
Sbjct: 186 FKPFRVEIVDPVDIYLNLLRTIFDFNAIKSLLTGPGQLKIRVDAMHGVMGPYVRKVLCDE 245
Query: 790 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 969
LGAPANSA+NCVPLEDFGG HPDPNLTYA L+E MK GE+ R MILG++
Sbjct: 246 LGAPANSAINCVPLEDFGGQHPDPNLTYATTLLEAMKGGEYGFGAAFDADGDRYMILGQN 305
Query: 970 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1149
GFFV+PSDS+A+IAAN+ IPYF+Q GVRGF RSMPTS ALDRVA + K+ +YETP GW+
Sbjct: 306 GFFVSPSDSLAIIAANLSCIPYFRQMGVRGFGRSMPTSTALDRVAKSMKVPVYETPAGWR 365
Query: 1150 FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKY 1329
FF NLMD+ + SLCGEESFGTGSDH+REKDGLWAVL WLSI+A RKQSVE+I++DHW K+
Sbjct: 366 FFSNLMDSGRCSLCGEESFGTGSDHLREKDGLWAVLVWLSIIAARKQSVEEIVRDHWAKF 425
Query: 1330 GRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPV 1509
GR+++ R+DYE +E + +M++LEAL++D+SF+G+QF VG VY+V K D+FEY DPV
Sbjct: 426 GRHYYCRFDYEGLEPKTTYYIMRDLEALLTDKSFIGQQFAVGSHVYSVAKTDSFEYVDPV 485
Query: 1510 DGSISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLI 1689
DG++++ QGLR+IF+D SR+IFRLS + ATIRLY +SYE+D + Q+PQ +L+PLI
Sbjct: 486 DGTVTKKQGLRIIFSDASRLIFRLSSSSGVRATIRLYAESYERDPSGHDQEPQAVLSPLI 545
Query: 1690 SIALKMSQLQERTGRTAPTVIT 1755
+IALK+SQ+ ERTGR PTVIT
Sbjct: 546 AIALKISQIHERTGRRGPTVIT 567
>ref|XP_002705027.1| PREDICTED: phosphoglucomutase 5-like [Bos taurus].
Length = 348
Score = 457 bits (1176), Expect = e-128
Identities = 216/343 (62%), Positives = 271/343 (79%), Gaps = 1/343 (0%)
Frame = +1
Query: 73 VKIVTVKTKAYQDQKP-GTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 249
+ ++TV T Y+DQ+P G GLR+ +F+ NY NFIQS++S+++ RQ T+VVG
Sbjct: 6 IPVLTVPTAPYEDQRPAGGGGLRRPTGLFEGQRNYLPNFIQSVLSSIDLRDRQGCTMVVG 65
Query: 250 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 429
DGR++ + A +++V++AAANGIGRL+IGQNGILSTPAVSC LTASH P
Sbjct: 66 SDGRYFSRTATEIVVQMAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCP 125
Query: 430 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 609
GGP G+FG+KFN++NGGPAP+ ++DKI+QISKTIEEY ICPDL++DL LG+Q+FDLENK
Sbjct: 126 GGPGGEFGVKFNVANGGPAPDVVSDKIYQISKTIEEYTICPDLRIDLSRLGRQEFDLENK 185
Query: 610 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 789
FKPF VEIVD V+ Y +LR IFDFNA+K LL+GP +LKIR+DAMHGV+GPYV+K+LC+E
Sbjct: 186 FKPFRVEIVDPVDIYLNLLRTIFDFNAIKSLLTGPGQLKIRVDAMHGVMGPYVRKVLCDE 245
Query: 790 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 969
LGAPANSA+NCVPLEDFGG HPDPNLTYA L+E MK GE+ R MILG++
Sbjct: 246 LGAPANSAINCVPLEDFGGQHPDPNLTYATTLLEAMKGGEYGFGAAFDADGDRYMILGQN 305
Query: 970 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDR 1098
GFFV+PSDS+A+IAAN+ IPYF+Q GVRGF RSMPTS ALDR
Sbjct: 306 GFFVSPSDSLAIIAANLSCIPYFRQMGVRGFGRSMPTSTALDR 348
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 93,906,915
Number of extensions: 2667440
Number of successful extensions: 9380
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9319
Number of HSP's successfully gapped: 3
Length of query: 788
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 678
Effective length of database: 14,041,694
Effective search space: 9520268532
Effective search space used: 9520268532
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012561
(2364 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865342.1| PREDICTED: similar to Phosphoglucomutase 1 (Glu... 1046 0.0
Alignment gi|XP_865359.1| PREDICTED: similar to phosphoglucomutase 1 isof... 980 0.0
Alignment gi|XP_536684.2| PREDICTED: similar to phosphoglucomutase 1 isof... 980 0.0
Alignment gi|XP_865309.1| PREDICTED: similar to Phosphoglucomutase 1 (Glu... 924 0.0
Alignment gi|XP_533534.2| PREDICTED: similar to phosphoglucomutase 5 [Can... 674 0.0
Alignment gi|XP_865293.1| PREDICTED: similar to phosphoglucomutase 1 isof... 153 8e-37
>ref|XP_865342.1| PREDICTED: similar to Phosphoglucomutase 1 (Glucose phosphomutase 1)
(PGM 1) isoform 4 [Canis familiaris].
Length = 562
Score = 1046 bits (2704), Expect = 0.0
Identities = 527/562 (93%), Positives = 535/562 (95%)
Frame = +1
Query: 70 MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 249
MVKIVTVKT+AY DQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPA RQEATLVVG
Sbjct: 1 MVKIVTVKTRAYPDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAQRQEATLVVG 60
Query: 250 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 429
GDGRFYMKEAIQLIVR+AAANGIGRLVIGQNGILSTPAVSC LTASHNP
Sbjct: 61 GDGRFYMKEAIQLIVRVAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNP 120
Query: 430 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 609
GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK
Sbjct: 121 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 180
Query: 610 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 789
FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE
Sbjct: 181 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 240
Query: 790 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 969
LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEH RNMILGKH
Sbjct: 241 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHDFGAAFDGDGDRNMILGKH 300
Query: 970 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1149
GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK
Sbjct: 301 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 360
Query: 1150 FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKY 1329
FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILA RKQSVEDILKDHWQKY
Sbjct: 361 FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILAARKQSVEDILKDHWQKY 420
Query: 1330 GRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPV 1509
GRNFFTRYDYEEVEAEGANKMMK+LEALISDRSFVGKQF VGDKVYTVEKIDNFEYSDPV
Sbjct: 421 GRNFFTRYDYEEVEAEGANKMMKDLEALISDRSFVGKQFSVGDKVYTVEKIDNFEYSDPV 480
Query: 1510 DGSISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLI 1689
DGS+SRNQGLR+IFADGSRIIFRLSGTGSAGATIRLYIDSYEKD+AKIYQDPQVMLAPLI
Sbjct: 481 DGSVSRNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDIAKIYQDPQVMLAPLI 540
Query: 1690 SIALKMSQLQERTGRTAPTVIT 1755
SIALK+SQLQE+TGRTAPTVIT
Sbjct: 541 SIALKVSQLQEKTGRTAPTVIT 562
>ref|XP_865359.1| PREDICTED: similar to phosphoglucomutase 1 isoform 5 [Canis
familiaris].
Length = 580
Score = 980 bits (2533), Expect = 0.0
Identities = 490/559 (87%), Positives = 513/559 (91%)
Frame = +1
Query: 79 IVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVGGDG 258
++T T Y DQKPGTSGLRK+ F++ Y ENFIQS+ +++ RQ +++VVGGDG
Sbjct: 22 LLTFATAPYYDQKPGTSGLRKKTYCFEAKPCYLENFIQSLFFSIDLKDRQGSSMVVGGDG 81
Query: 259 RFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGP 438
R++ K AI+ IV++AAANGIGRLVIGQNGILSTPAVSC LTASHNPGGP
Sbjct: 82 RYFNKSAIETIVQMAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGP 141
Query: 439 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP 618
NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP
Sbjct: 142 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP 201
Query: 619 FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 798
FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA
Sbjct: 202 FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 261
Query: 799 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKHGFF 978
PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEH RNMILGKHGFF
Sbjct: 262 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHDFGAAFDGDGDRNMILGKHGFF 321
Query: 979 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 1158
VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG
Sbjct: 322 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 381
Query: 1159 NLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKYGRN 1338
NLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILA RKQSVEDILKDHWQKYGRN
Sbjct: 382 NLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILAARKQSVEDILKDHWQKYGRN 441
Query: 1339 FFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPVDGS 1518
FFTRYDYEEVEAEGANKMMK+LEALISDRSFVGKQF VGDKVYTVEKIDNFEYSDPVDGS
Sbjct: 442 FFTRYDYEEVEAEGANKMMKDLEALISDRSFVGKQFSVGDKVYTVEKIDNFEYSDPVDGS 501
Query: 1519 ISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLISIA 1698
+SRNQGLR+IFADGSRIIFRLSGTGSAGATIRLYIDSYEKD+AKIYQDPQVMLAPLISIA
Sbjct: 502 VSRNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDIAKIYQDPQVMLAPLISIA 561
Query: 1699 LKMSQLQERTGRTAPTVIT 1755
LK+SQLQE+TGRTAPTVIT
Sbjct: 562 LKVSQLQEKTGRTAPTVIT 580
>ref|XP_536684.2| PREDICTED: similar to phosphoglucomutase 1 isoform 1 [Canis
familiaris].
Length = 580
Score = 980 bits (2533), Expect = 0.0
Identities = 490/559 (87%), Positives = 513/559 (91%)
Frame = +1
Query: 79 IVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVGGDG 258
++T T Y DQKPGTSGLRK+ F++ Y ENFIQS+ +++ RQ +++VVGGDG
Sbjct: 22 LLTFATAPYYDQKPGTSGLRKKTYCFEAKPCYLENFIQSLFFSIDLKDRQGSSMVVGGDG 81
Query: 259 RFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGP 438
R++ K AI+ IV++AAANGIGRLVIGQNGILSTPAVSC LTASHNPGGP
Sbjct: 82 RYFNKSAIETIVQMAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGP 141
Query: 439 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP 618
NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP
Sbjct: 142 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP 201
Query: 619 FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 798
FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA
Sbjct: 202 FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 261
Query: 799 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKHGFF 978
PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEH RNMILGKHGFF
Sbjct: 262 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHDFGAAFDGDGDRNMILGKHGFF 321
Query: 979 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 1158
VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG
Sbjct: 322 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 381
Query: 1159 NLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKYGRN 1338
NLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILA RKQSVEDILKDHWQKYGRN
Sbjct: 382 NLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILAARKQSVEDILKDHWQKYGRN 441
Query: 1339 FFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPVDGS 1518
FFTRYDYEEVEAEGANKMMK+LEALISDRSFVGKQF VGDKVYTVEKIDNFEYSDPVDGS
Sbjct: 442 FFTRYDYEEVEAEGANKMMKDLEALISDRSFVGKQFSVGDKVYTVEKIDNFEYSDPVDGS 501
Query: 1519 ISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLISIA 1698
+SRNQGLR+IFADGSRIIFRLSGTGSAGATIRLYIDSYEKD+AKIYQDPQVMLAPLISIA
Sbjct: 502 VSRNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDIAKIYQDPQVMLAPLISIA 561
Query: 1699 LKMSQLQERTGRTAPTVIT 1755
LK+SQLQE+TGRTAPTVIT
Sbjct: 562 LKVSQLQEKTGRTAPTVIT 580
>ref|XP_865309.1| PREDICTED: similar to Phosphoglucomutase 1 (Glucose phosphomutase 1)
(PGM 1) isoform 3 [Canis familiaris].
Length = 513
Score = 924 bits (2388), Expect = 0.0
Identities = 478/562 (85%), Positives = 486/562 (86%)
Frame = +1
Query: 70 MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 249
MVKIVTVKT+AY DQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPA RQEATLVVG
Sbjct: 1 MVKIVTVKTRAYPDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAQRQEATLVVG 60
Query: 250 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 429
GDGRFYMKEAIQLIVR+AAANGIGRLVIGQNGILSTPAVSC LTASHNP
Sbjct: 61 GDGRFYMKEAIQLIVRVAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNP 120
Query: 430 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 609
GGPNGDFGIKFNISNG
Sbjct: 121 GGPNGDFGIKFNISNG-------------------------------------------- 136
Query: 610 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 789
VEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE
Sbjct: 137 -----VEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 191
Query: 790 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 969
LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEH RNMILGKH
Sbjct: 192 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHDFGAAFDGDGDRNMILGKH 251
Query: 970 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1149
GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK
Sbjct: 252 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 311
Query: 1150 FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKY 1329
FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILA RKQSVEDILKDHWQKY
Sbjct: 312 FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILAARKQSVEDILKDHWQKY 371
Query: 1330 GRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPV 1509
GRNFFTRYDYEEVEAEGANKMMK+LEALISDRSFVGKQF VGDKVYTVEKIDNFEYSDPV
Sbjct: 372 GRNFFTRYDYEEVEAEGANKMMKDLEALISDRSFVGKQFSVGDKVYTVEKIDNFEYSDPV 431
Query: 1510 DGSISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLI 1689
DGS+SRNQGLR+IFADGSRIIFRLSGTGSAGATIRLYIDSYEKD+AKIYQDPQVMLAPLI
Sbjct: 432 DGSVSRNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDIAKIYQDPQVMLAPLI 491
Query: 1690 SIALKMSQLQERTGRTAPTVIT 1755
SIALK+SQLQE+TGRTAPTVIT
Sbjct: 492 SIALKVSQLQEKTGRTAPTVIT 513
>ref|XP_533534.2| PREDICTED: similar to phosphoglucomutase 5 [Canis familiaris].
Length = 494
Score = 674 bits (1739), Expect = 0.0
Identities = 317/480 (66%), Positives = 394/480 (82%)
Frame = +1
Query: 316 IGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGPNGDFGIKFNISNGGPAPEA 495
IGRL+IGQNGILSTPAVSC LTASH PGGP G+FG+KFN++NGGPAP+
Sbjct: 15 IGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGGPAPDV 74
Query: 496 ITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNI 675
++DKI+QISKTIEEYAICPDL++DL LG+Q+FDLENKFKPF VEIVD V+ Y +LR I
Sbjct: 75 VSDKIYQISKTIEEYAICPDLRIDLSRLGRQEFDLENKFKPFRVEIVDPVDIYLNLLRTI 134
Query: 676 FDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHP 855
FDFNA+K LL+GP +LKIR+DAMHGV+GPYV+K+LC+ELGAPANSA+NCVPLEDFGG HP
Sbjct: 135 FDFNAIKSLLTGPGQLKIRVDAMHGVMGPYVRKVLCDELGAPANSAINCVPLEDFGGQHP 194
Query: 856 DPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKHGFFVNPSDSVAVIAANIFSIPY 1035
DPNLTYA L+E MK GE+ R MILG++GFFV+PSDS+A+IAAN+ IPY
Sbjct: 195 DPNLTYATTLLEAMKGGEYGFGAAFDADGDRYMILGRNGFFVSPSDSLAIIAANLPCIPY 254
Query: 1036 FQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTG 1215
F+Q GVRGF RSMPTS ALDRVA + K+ +YETP GW+FF NLMD+ + SLCGEESFGTG
Sbjct: 255 FRQMGVRGFGRSMPTSMALDRVAKSMKVPVYETPAGWRFFSNLMDSGRCSLCGEESFGTG 314
Query: 1216 SDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMM 1395
SDH+REKDGLWAVL WLSILA RKQSVE+I++DHW K+GR+++ R+DYE +E + +M
Sbjct: 315 SDHLREKDGLWAVLVWLSILAARKQSVEEIVRDHWAKFGRHYYCRFDYEGLEPKTTYYIM 374
Query: 1396 KELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPVDGSISRNQGLRVIFADGSRIIF 1575
++LEAL++D+SF+G+QF VG+ VY+V K D FEY DPVDG++++ QGLR+IF+D SR+IF
Sbjct: 375 RDLEALVTDKSFIGQQFAVGNHVYSVAKTDCFEYVDPVDGTVTKKQGLRIIFSDASRLIF 434
Query: 1576 RLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLISIALKMSQLQERTGRTAPTVIT 1755
RLS + ATIRLY +SYE+D + Q+PQ +L+PLI+IALK+SQ+ ERTGR PTVIT
Sbjct: 435 RLSSSSGMRATIRLYAESYERDPSGHDQEPQAVLSPLIAIALKISQIHERTGRRGPTVIT 494
>ref|XP_865293.1| PREDICTED: similar to phosphoglucomutase 1 isoform 2 [Canis
familiaris].
Length = 90
Score = 153 bits (386), Expect = 8e-37
Identities = 78/82 (95%), Positives = 80/82 (97%)
Frame = +1
Query: 70 MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 249
MVKIVTVKT+AY DQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPA RQEATLVVG
Sbjct: 1 MVKIVTVKTRAYPDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAQRQEATLVVG 60
Query: 250 GDGRFYMKEAIQLIVRIAAANG 315
GDGRFYMKEAIQLIVR+AAANG
Sbjct: 61 GDGRFYMKEAIQLIVRVAAANG 82
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 98,048,165
Number of extensions: 2737161
Number of successful extensions: 9439
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9387
Number of HSP's successfully gapped: 7
Length of query: 788
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 677
Effective length of database: 15,174,208
Effective search space: 10272938816
Effective search space used: 10272938816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012561
(2364 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127993.1| PREDICTED: phosphoglucomutase-1 isoform 1 [S... 1073 0.0
Alignment gi|XP_003127994.1| PREDICTED: phosphoglucomutase-1 isoform 2 [S... 993 0.0
Alignment gi|XP_003121981.2| PREDICTED: phosphoglucomutase-like protein 5... 678 0.0
Alignment gi|XP_003121984.2| PREDICTED: phosphoglucomutase-like protein 5... 260 3e-69
Alignment gi|XP_003361355.1| PREDICTED: phosphoglucomutase-like protein 5... 218 2e-56
Alignment gi|XP_003121980.2| PREDICTED: phosphoglucomutase-like protein 5... 158 1e-38
>ref|XP_003127993.1| PREDICTED: phosphoglucomutase-1 isoform 1 [Sus scrofa].
Length = 590
Score = 1073 bits (2775), Expect = 0.0
Identities = 544/567 (95%), Positives = 544/567 (95%)
Frame = +1
Query: 55 KQTATMVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEA 234
KQTATMVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEA
Sbjct: 24 KQTATMVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEA 83
Query: 235 TLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLT 414
TLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSC LT
Sbjct: 84 TLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILT 143
Query: 415 ASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQF 594
ASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQF
Sbjct: 144 ASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQF 203
Query: 595 DLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKK 774
DLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKK
Sbjct: 204 DLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKK 263
Query: 775 ILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNM 954
ILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEH RNM
Sbjct: 264 ILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHDFGAAFDGDGDRNM 323
Query: 955 ILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYET 1134
ILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYET
Sbjct: 324 ILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYET 383
Query: 1135 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKD 1314
PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKD
Sbjct: 384 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKD 443
Query: 1315 HWQKYGRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFE 1494
HWQKYGRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFE
Sbjct: 444 HWQKYGRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFE 503
Query: 1495 YSDPVDGSISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVM 1674
YSDPVDGSISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVM
Sbjct: 504 YSDPVDGSISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVM 563
Query: 1675 LAPLISIALKMSQLQERTGRTAPTVIT 1755
LAPLISIALKMSQLQERTGRTAPTVIT
Sbjct: 564 LAPLISIALKMSQLQERTGRTAPTVIT 590
>ref|XP_003127994.1| PREDICTED: phosphoglucomutase-1 isoform 2 [Sus scrofa].
Length = 580
Score = 993 bits (2566), Expect = 0.0
Identities = 500/559 (89%), Positives = 515/559 (92%)
Frame = +1
Query: 79 IVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVGGDG 258
++T T Y DQKPGTSGLRK+ F++ Y ENFIQSI +++ RQ ++LVVGGDG
Sbjct: 22 LLTFTTAPYYDQKPGTSGLRKKTYFFEAKPCYLENFIQSIFFSIDLKDRQGSSLVVGGDG 81
Query: 259 RFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGP 438
R++ K AI+ IV++AAANGIGRLVIGQNGILSTPAVSC LTASHNPGGP
Sbjct: 82 RYFNKSAIETIVQMAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGP 141
Query: 439 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP 618
NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP
Sbjct: 142 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP 201
Query: 619 FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 798
FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA
Sbjct: 202 FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 261
Query: 799 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKHGFF 978
PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEH RNMILGKHGFF
Sbjct: 262 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHDFGAAFDGDGDRNMILGKHGFF 321
Query: 979 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 1158
VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG
Sbjct: 322 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 381
Query: 1159 NLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKYGRN 1338
NLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKYGRN
Sbjct: 382 NLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKYGRN 441
Query: 1339 FFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPVDGS 1518
FFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPVDGS
Sbjct: 442 FFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPVDGS 501
Query: 1519 ISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLISIA 1698
ISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLISIA
Sbjct: 502 ISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLISIA 561
Query: 1699 LKMSQLQERTGRTAPTVIT 1755
LKMSQLQERTGRTAPTVIT
Sbjct: 562 LKMSQLQERTGRTAPTVIT 580
>ref|XP_003121981.2| PREDICTED: phosphoglucomutase-like protein 5-like [Sus scrofa].
Length = 539
Score = 678 bits (1749), Expect = 0.0
Identities = 317/481 (65%), Positives = 395/481 (82%)
Frame = +1
Query: 313 GIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGPNGDFGIKFNISNGGPAPE 492
GIGRL+IGQNGILSTPAVSC LTASH PGGP G+FG+KFN++NGGPAP+
Sbjct: 59 GIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGGPAPD 118
Query: 493 AITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRN 672
++DKI+QISKTIEEYAICPDL++DL LG+Q+FDLENKFKPF VEIVD V+ Y +LR
Sbjct: 119 VVSDKIYQISKTIEEYAICPDLRIDLSRLGRQEFDLENKFKPFRVEIVDPVDIYLNLLRT 178
Query: 673 IFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHH 852
IFDFNA+K LL+GP +LKIR+DAMHGV+GPYV+K+LC+ELGAPANSA+NCVPLEDFGG H
Sbjct: 179 IFDFNAIKSLLTGPGQLKIRVDAMHGVMGPYVRKVLCDELGAPANSAINCVPLEDFGGQH 238
Query: 853 PDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKHGFFVNPSDSVAVIAANIFSIP 1032
PDPNLTYA L+E MK GE+ R MILG++GFFV+PSDS+A+IAAN+ IP
Sbjct: 239 PDPNLTYATTLLEAMKGGEYGFGAAFDADGDRYMILGQNGFFVSPSDSLAIIAANLSCIP 298
Query: 1033 YFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGT 1212
YF+Q GVRGF RSMPTS ALDRVA + K+ +YETP GW+FF NLMD+ + SLCGEESFGT
Sbjct: 299 YFRQMGVRGFGRSMPTSTALDRVAKSMKVPVYETPAGWRFFSNLMDSGRCSLCGEESFGT 358
Query: 1213 GSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKM 1392
GSDH+REKDGLWAVL WLSI+A RKQSVE+I++DHW K+GR+++ R+DYE +E + +
Sbjct: 359 GSDHLREKDGLWAVLVWLSIIAARKQSVEEIVRDHWAKFGRHYYCRFDYEGLEPKTTYYI 418
Query: 1393 MKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPVDGSISRNQGLRVIFADGSRII 1572
M++LEAL++D+SF+G+QF VG VY+V K D+FEY DPVDG++++ QGLR+IF+D SR+I
Sbjct: 419 MRDLEALVTDKSFIGQQFAVGSHVYSVAKTDSFEYVDPVDGTVTKKQGLRIIFSDASRLI 478
Query: 1573 FRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLISIALKMSQLQERTGRTAPTVI 1752
FRLS + ATIRLY +SYE+D + Q+PQ +L+PLI+IALK+SQ+ ERTGR PTVI
Sbjct: 479 FRLSSSSGVRATIRLYAESYERDPSGHDQEPQAVLSPLIAIALKISQIHERTGRRGPTVI 538
Query: 1753 T 1755
T
Sbjct: 539 T 539
Score = 63.9 bits (154), Expect = 4e-10
Identities = 26/39 (66%), Positives = 32/39 (82%)
Frame = +1
Query: 1099 VANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTG 1215
VA + K+ +YETP GW+FF NLMD+ + SLCGEESFGTG
Sbjct: 17 VAKSMKVPVYETPAGWRFFSNLMDSGRCSLCGEESFGTG 55
>ref|XP_003121984.2| PREDICTED: phosphoglucomutase-like protein 5-like [Sus scrofa].
Length = 312
Score = 260 bits (664), Expect = 3e-69
Identities = 115/192 (59%), Positives = 157/192 (81%)
Frame = +1
Query: 1096 RVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSIL 1275
+VA + K+ +YETP GW+FF NLMD+ + SLCGEESFGTGSDH+REKDGLWAVL WLSI+
Sbjct: 13 KVAKSMKVPVYETPAGWRFFSNLMDSGRCSLCGEESFGTGSDHLREKDGLWAVLVWLSII 72
Query: 1276 ATRKQSVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVG 1455
A RKQSVE+I++DHW K+GR+++ R+DYE +E + +M++LEAL++D+SF+G+QF VG
Sbjct: 73 AARKQSVEEIVRDHWAKFGRHYYCRFDYEGLEPKTTYYIMRDLEALVTDKSFIGQQFAVG 132
Query: 1456 DKVYTVEKIDNFEYSDPVDGSISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYE 1635
VY+V K D+FEY DPVDG++++ QGLR+IF+D SR+IFRLS + ATIRLY +SYE
Sbjct: 133 SHVYSVAKTDSFEYVDPVDGTVTKKQGLRIIFSDASRLIFRLSSSSGVRATIRLYAESYE 192
Query: 1636 KDLAKIYQDPQV 1671
+D + Q+PQ+
Sbjct: 193 RDPSGHDQEPQI 204
>ref|XP_003361355.1| PREDICTED: phosphoglucomutase-like protein 5-like, partial [Sus
scrofa].
Length = 148
Score = 218 bits (554), Expect = 2e-56
Identities = 101/145 (69%), Positives = 120/145 (82%)
Frame = +1
Query: 316 IGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGPNGDFGIKFNISNGGPAPEA 495
IGRL+IGQNGILSTPAVSC LTASH PGGP G+FG+KFN++NGGPAP+
Sbjct: 4 IGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGGPAPDV 63
Query: 496 ITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNI 675
++DKI+QISKTIEEYAICPDL++DL LG+Q+FDLENKFKPF VEIVD V+ Y +LR I
Sbjct: 64 VSDKIYQISKTIEEYAICPDLRIDLSRLGRQEFDLENKFKPFRVEIVDPVDIYLNLLRTI 123
Query: 676 FDFNALKELLSGPNRLKIRIDAMHG 750
FDFNA+K LL+GP +LKIR+DAMHG
Sbjct: 124 FDFNAIKSLLTGPGQLKIRVDAMHG 148
>ref|XP_003121980.2| PREDICTED: phosphoglucomutase-like protein 5-like [Sus scrofa].
Length = 213
Score = 158 bits (399), Expect = 1e-38
Identities = 72/102 (70%), Positives = 85/102 (83%)
Frame = +1
Query: 316 IGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGPNGDFGIKFNISNGGPAPEA 495
IGRL+IGQNGILSTPAVSC LTASH PGGP G+FG+KFN++NGGPAP+
Sbjct: 16 IGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGGPAPDV 75
Query: 496 ITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPF 621
++DKI+QISKTIEEYAICPDL++DL LG+Q+FDLENKFKPF
Sbjct: 76 VSDKIYQISKTIEEYAICPDLRIDLSRLGRQEFDLENKFKPF 117
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 60,719,029
Number of extensions: 1745216
Number of successful extensions: 6149
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6100
Number of HSP's successfully gapped: 7
Length of query: 788
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 681
Effective length of database: 8,679,953
Effective search space: 5911047993
Effective search space used: 5911047993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012561
(2364 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082408.3| phosphoglucomutase-1 [Mus musculus]. 1027 0.0
Alignment gi|NP_778178.3| phosphoglucomutase-like protein 5 [Mus musculus]. 756 0.0
>ref|NP_082408.3| phosphoglucomutase-1 [Mus musculus].
Length = 562
Score = 1027 bits (2655), Expect = 0.0
Identities = 519/562 (92%), Positives = 530/562 (94%)
Frame = +1
Query: 70 MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 249
MVKIVTVKT+AY DQKPGTSGLRKRVKVFQS+ANYAENFIQSI+STVEPA RQEATLVVG
Sbjct: 1 MVKIVTVKTQAYPDQKPGTSGLRKRVKVFQSNANYAENFIQSIVSTVEPALRQEATLVVG 60
Query: 250 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 429
GDGRFYM EAIQLIVRIAAANGIGRLVIGQNGILSTPAVSC LTASHNP
Sbjct: 61 GDGRFYMTEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNP 120
Query: 430 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 609
GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK
Sbjct: 121 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 180
Query: 610 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 789
FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE
Sbjct: 181 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 240
Query: 790 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 969
LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMK+GEH RNMILGKH
Sbjct: 241 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKH 300
Query: 970 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1149
GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK
Sbjct: 301 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 360
Query: 1150 FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKY 1329
FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQK+
Sbjct: 361 FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKF 420
Query: 1330 GRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPV 1509
GRNFFTRYDYEEVEAEGANKMMK+LEAL+ DRSFVGKQF DKVYTVEK DNFEYSDPV
Sbjct: 421 GRNFFTRYDYEEVEAEGANKMMKDLEALMLDRSFVGKQFSANDKVYTVEKADNFEYSDPV 480
Query: 1510 DGSISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLI 1689
DGSIS+NQGLR+IFADGSRIIFRLSGTGSAGATIRLYIDSYEKD+AKI QDPQVMLAPLI
Sbjct: 481 DGSISKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDVAKINQDPQVMLAPLI 540
Query: 1690 SIALKMSQLQERTGRTAPTVIT 1755
SIALK+SQLQERTGRTAPTVIT
Sbjct: 541 SIALKVSQLQERTGRTAPTVIT 562
>ref|NP_778178.3| phosphoglucomutase-like protein 5 [Mus musculus].
Length = 567
Score = 756 bits (1951), Expect = 0.0
Identities = 352/562 (62%), Positives = 454/562 (80%), Gaps = 1/562 (0%)
Frame = +1
Query: 73 VKIVTVKTKAYQDQKP-GTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 249
+ ++TV T Y+DQ+P G GLR+ +F+ NY NFIQS++S+++ RQ T+VVG
Sbjct: 6 IPVLTVPTAPYEDQRPTGGGGLRRPTGLFEGQRNYLPNFIQSVLSSIDLRDRQGCTMVVG 65
Query: 250 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 429
DGR++ + A +++V++AAANGIGRL+IGQNGILSTPAVSC LTASH P
Sbjct: 66 SDGRYFSRTATEIVVQMAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCP 125
Query: 430 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 609
GGP G+FG+KFN++NGGPAP+ ++DKI+QISKTIEEYAICPDL++DL LG+Q+FDLENK
Sbjct: 126 GGPGGEFGVKFNVANGGPAPDVVSDKIYQISKTIEEYAICPDLRIDLSRLGRQEFDLENK 185
Query: 610 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 789
FKPF VEIVD V+ Y +LRNIFDFNA+K LL+GP++LKIR+DAMHGV+GPYV+K+LC+E
Sbjct: 186 FKPFRVEIVDPVDIYLNLLRNIFDFNAIKSLLTGPSQLKIRVDAMHGVMGPYVRKVLCDE 245
Query: 790 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 969
LGAPANSA+NCVPLEDFGG HPDPNLTYA L+E MK GE+ R MILG++
Sbjct: 246 LGAPANSAINCVPLEDFGGQHPDPNLTYATTLLEAMKGGEYGFGAAFDADGDRYMILGQN 305
Query: 970 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1149
GFFV+PSDS+A+IAAN+ IPYF+Q GVRGF RSMPTS ALDRVA + K+ +YETP GW+
Sbjct: 306 GFFVSPSDSLAIIAANLSCIPYFRQMGVRGFGRSMPTSTALDRVAKSMKVPVYETPAGWR 365
Query: 1150 FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKY 1329
FF NLMD+ + SLCGEESFGTGSDH+REKDGLWAVL WLSI+A RKQSVE+I++DHW KY
Sbjct: 366 FFSNLMDSGRCSLCGEESFGTGSDHLREKDGLWAVLVWLSIIAARKQSVEEIVRDHWAKY 425
Query: 1330 GRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPV 1509
GR+++ R+DYE +E + +M++LEAL++D+SF+G+QF VG +Y++ K D+FEY DPV
Sbjct: 426 GRHYYCRFDYEGLEPKATYYIMRDLEALVTDKSFIGQQFAVGSHIYSIAKTDSFEYVDPV 485
Query: 1510 DGSISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLI 1689
DG++++ QGLR+IF+D SR+IFRLS + ATIRLY +SYE+D + Q+PQ +L+PLI
Sbjct: 486 DGTVTKKQGLRIIFSDASRLIFRLSSSSGVRATIRLYAESYERDPSGHDQEPQAVLSPLI 545
Query: 1690 SIALKMSQLQERTGRTAPTVIT 1755
+IALK+SQ+ ERTGR PTVIT
Sbjct: 546 AIALKISQIHERTGRRGPTVIT 567
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 81,503,398
Number of extensions: 2259125
Number of successful extensions: 7977
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7920
Number of HSP's successfully gapped: 2
Length of query: 788
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 679
Effective length of database: 12,343,635
Effective search space: 8381328165
Effective search space used: 8381328165
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012561
(2364 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002624.2| phosphoglucomutase-1 isoform 1 [Homo sapiens]. 1027 0.0
Alignment gi|NP_001166289.1| phosphoglucomutase-1 isoform 2 [Homo sapiens]. 962 0.0
Alignment gi|NP_068800.2| phosphoglucomutase-like protein 5 [Homo sapiens]. 748 0.0
Alignment gi|NP_001166290.1| phosphoglucomutase-1 isoform 3 [Homo sapiens]. 677 0.0
>ref|NP_002624.2| phosphoglucomutase-1 isoform 1 [Homo sapiens].
Length = 562
Score = 1027 bits (2656), Expect = 0.0
Identities = 518/562 (92%), Positives = 530/562 (94%)
Frame = +1
Query: 70 MVKIVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 249
MVKIVTVKT+AYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPA RQEATLVVG
Sbjct: 1 MVKIVTVKTQAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAQRQEATLVVG 60
Query: 250 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 429
GDGRFYMKEAIQLI RIAAANGIGRLVIGQNGILSTPAVSC LTASHNP
Sbjct: 61 GDGRFYMKEAIQLIARIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNP 120
Query: 430 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 609
GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYA+CPDLKVDLGVLGKQQFDLENK
Sbjct: 121 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAVCPDLKVDLGVLGKQQFDLENK 180
Query: 610 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 789
FKPFTVEIVDSVEAYATMLR+IFDF+ALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE
Sbjct: 181 FKPFTVEIVDSVEAYATMLRSIFDFSALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 240
Query: 790 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 969
LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMK+GEH RNMILGKH
Sbjct: 241 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKH 300
Query: 970 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1149
GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVA+ATKIALYETPTGWK
Sbjct: 301 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVASATKIALYETPTGWK 360
Query: 1150 FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKY 1329
FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKY
Sbjct: 361 FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKY 420
Query: 1330 GRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPV 1509
GRNFFTRYDYEEVEAEGANKMMK+LEAL+ DRSFVGKQF DKVYTVEK DNFEYSDPV
Sbjct: 421 GRNFFTRYDYEEVEAEGANKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYSDPV 480
Query: 1510 DGSISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLI 1689
DGSISRNQGLR+IF DGSRI+FRLSGTGSAGATIRLYIDSYEKD+AKI QDPQVMLAPLI
Sbjct: 481 DGSISRNQGLRLIFTDGSRIVFRLSGTGSAGATIRLYIDSYEKDVAKINQDPQVMLAPLI 540
Query: 1690 SIALKMSQLQERTGRTAPTVIT 1755
SIALK+SQLQERTGRTAPTVIT
Sbjct: 541 SIALKVSQLQERTGRTAPTVIT 562
>ref|NP_001166289.1| phosphoglucomutase-1 isoform 2 [Homo sapiens].
Length = 580
Score = 962 bits (2487), Expect = 0.0
Identities = 482/559 (86%), Positives = 507/559 (90%)
Frame = +1
Query: 79 IVTVKTKAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVGGDG 258
++T T Y DQKPGTSGLRK+ F+ Y ENFIQSI +++ RQ ++LVVGGDG
Sbjct: 22 LLTFATAPYHDQKPGTSGLRKKTYYFEEKPCYLENFIQSIFFSIDLKDRQGSSLVVGGDG 81
Query: 259 RFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNPGGP 438
R++ K AI+ IV++AAANGIGRLVIGQNGILSTPAVSC LTASHNPGGP
Sbjct: 82 RYFNKSAIETIVQMAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGP 141
Query: 439 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKP 618
NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYA+CPDLKVDLGVLGKQQFDLENKFKP
Sbjct: 142 NGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAVCPDLKVDLGVLGKQQFDLENKFKP 201
Query: 619 FTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 798
FTVEIVDSVEAYATMLR+IFDF+ALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA
Sbjct: 202 FTVEIVDSVEAYATMLRSIFDFSALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGA 261
Query: 799 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKHGFF 978
PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMK+GEH RNMILGKHGFF
Sbjct: 262 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFF 321
Query: 979 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 1158
VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVA+ATKIALYETPTGWKFFG
Sbjct: 322 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVASATKIALYETPTGWKFFG 381
Query: 1159 NLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKYGRN 1338
NLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKYGRN
Sbjct: 382 NLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKYGRN 441
Query: 1339 FFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPVDGS 1518
FFTRYDYEEVEAEGANKMMK+LEAL+ DRSFVGKQF DKVYTVEK DNFEYSDPVDGS
Sbjct: 442 FFTRYDYEEVEAEGANKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGS 501
Query: 1519 ISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLISIA 1698
ISRNQGLR+IF DGSRI+FRLSGTGSAGATIRLYIDSYEKD+AKI QDPQVMLAPLISIA
Sbjct: 502 ISRNQGLRLIFTDGSRIVFRLSGTGSAGATIRLYIDSYEKDVAKINQDPQVMLAPLISIA 561
Query: 1699 LKMSQLQERTGRTAPTVIT 1755
LK+SQLQERTGRTAPTVIT
Sbjct: 562 LKVSQLQERTGRTAPTVIT 580
>ref|NP_068800.2| phosphoglucomutase-like protein 5 [Homo sapiens].
Length = 567
Score = 748 bits (1931), Expect = 0.0
Identities = 350/562 (62%), Positives = 454/562 (80%), Gaps = 1/562 (0%)
Frame = +1
Query: 73 VKIVTVKTKAYQDQKP-GTSGLRKRVKVFQSSANYAENFIQSIISTVEPAHRQEATLVVG 249
+ ++TV T Y+DQ+P G GLR+ +F+ NY NFIQS++S+++ RQ T+VVG
Sbjct: 6 IPVLTVPTAPYEDQRPAGGGGLRRPTGLFEGQRNYLPNFIQSVLSSIDLRDRQGCTMVVG 65
Query: 250 GDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCXXXXXXXXXXXXLTASHNP 429
DGR++ + AI+++V++AAANGIGRL+IGQNGILSTPAVSC LTASH P
Sbjct: 66 SDGRYFSRTAIEIVVQMAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCP 125
Query: 430 GGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENK 609
GGP G+FG+KFN++NGGPAP+ ++DKI+QISKTIEEYAICPDL++DL LG+Q+FDLENK
Sbjct: 126 GGPGGEFGVKFNVANGGPAPDVVSDKIYQISKTIEEYAICPDLRIDLSRLGRQEFDLENK 185
Query: 610 FKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEE 789
FKPF VEIVD V+ Y +LR IFDF+A+K LL+GP++LKIRIDAMHGV+GPYV+K+LC+E
Sbjct: 186 FKPFRVEIVDPVDIYLNLLRTIFDFHAIKGLLTGPSQLKIRIDAMHGVMGPYVRKVLCDE 245
Query: 790 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKH 969
LGAPANSA+NCVPLEDFGG HPDPNLTYA L+E MK GE+ R MILG++
Sbjct: 246 LGAPANSAINCVPLEDFGGQHPDPNLTYATTLLEAMKGGEYGFGAAFDADGDRYMILGQN 305
Query: 970 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 1149
GFFV+PSDS+A+IAAN+ IPYF+Q GVRGF RSMPTS ALDRVA + K+ +YETP GW+
Sbjct: 306 GFFVSPSDSLAIIAANLSCIPYFRQMGVRGFGRSMPTSMALDRVAKSMKVPVYETPAGWR 365
Query: 1150 FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKY 1329
FF NLMD+ + +LCGEESFGTGSDH+REKDGLWAVL WLSI+A RKQSVE+I++DHW K+
Sbjct: 366 FFSNLMDSGRCNLCGEESFGTGSDHLREKDGLWAVLVWLSIIAARKQSVEEIVRDHWAKF 425
Query: 1330 GRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPV 1509
GR+++ R+DYE ++ + +M++LEAL++D+SF+G+QF VG VY+V K D+FEY DPV
Sbjct: 426 GRHYYCRFDYEGLDPKTTYYIMRDLEALVTDKSFIGQQFAVGSHVYSVAKTDSFEYVDPV 485
Query: 1510 DGSISRNQGLRVIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLI 1689
DG++++ QGLR+IF+D SR+IFRLS + AT+RLY +SYE+D + Q+PQ +L+PLI
Sbjct: 486 DGTVTKKQGLRIIFSDASRLIFRLSSSSGVRATLRLYAESYERDPSGHDQEPQAVLSPLI 545
Query: 1690 SIALKMSQLQERTGRTAPTVIT 1755
+IALK+SQ+ ERTGR PTVIT
Sbjct: 546 AIALKISQIHERTGRRGPTVIT 567
>ref|NP_001166290.1| phosphoglucomutase-1 isoform 3 [Homo sapiens].
Length = 365
Score = 677 bits (1746), Expect = 0.0
Identities = 337/365 (92%), Positives = 347/365 (95%)
Frame = +1
Query: 661 MLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDF 840
MLR+IFDF+ALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDF
Sbjct: 1 MLRSIFDFSALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDF 60
Query: 841 GGHHPDPNLTYAADLVETMKTGEHXXXXXXXXXXXRNMILGKHGFFVNPSDSVAVIAANI 1020
GGHHPDPNLTYAADLVETMK+GEH RNMILGKHGFFVNPSDSVAVIAANI
Sbjct: 61 GGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANI 120
Query: 1021 FSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEE 1200
FSIPYFQQTGVRGFARSMPTSGALDRVA+ATKIALYETPTGWKFFGNLMDASKLSLCGEE
Sbjct: 121 FSIPYFQQTGVRGFARSMPTSGALDRVASATKIALYETPTGWKFFGNLMDASKLSLCGEE 180
Query: 1201 SFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKYGRNFFTRYDYEEVEAEG 1380
SFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKYGRNFFTRYDYEEVEAEG
Sbjct: 181 SFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKYGRNFFTRYDYEEVEAEG 240
Query: 1381 ANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPVDGSISRNQGLRVIFADG 1560
ANKMMK+LEAL+ DRSFVGKQF DKVYTVEK DNFEYSDPVDGSISRNQGLR+IF DG
Sbjct: 241 ANKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISRNQGLRLIFTDG 300
Query: 1561 SRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLISIALKMSQLQERTGRTA 1740
SRI+FRLSGTGSAGATIRLYIDSYEKD+AKI QDPQVMLAPLISIALK+SQLQERTGRTA
Sbjct: 301 SRIVFRLSGTGSAGATIRLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRTA 360
Query: 1741 PTVIT 1755
PTVIT
Sbjct: 361 PTVIT 365
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 96,274,332
Number of extensions: 2696234
Number of successful extensions: 9413
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9339
Number of HSP's successfully gapped: 4
Length of query: 788
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 677
Effective length of database: 14,638,160
Effective search space: 9910034320
Effective search space used: 9910034320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012561
(2364 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1059 0.0
Sscrofa_Chr16 541 e-151
Sscrofa_Chr01 80 6e-12
>Sscrofa_Chr06
|| Length = 157765593
Score = 1059 bits (534), Expect = 0.0
Identities = 603/616 (97%), Gaps = 8/616 (1%)
Strand = Plus / Minus
Query: 1666 caggtcatgttggccccccttatttccatcgctctgaagatgtctcagctccaggaaagg 1725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137171953 caggtcatgttggccccccttatttccatcgctctgaagatgtctcagctccaggaaagg 137171894
Query: 1726 acgggtcgcaccgcacccactgttatcacctaagaagacaggccggatgtggtacgtccc 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137171893 acgggtcgcaccgcacccactgttatcacctaagaagacaggccggatgtggtacgtccc 137171834
Query: 1786 tctgccccaggaccctccgcgtcatctgactgaagagcatggacagaaacgaagtgtctt 1845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137171833 tctgccccaggaccctccgcgtcatctgactgaagagcatggacagaaacgaagtgtctt 137171774
Query: 1846 cacccaggctttgtagaactcagagtttccactcaccggttgttgacagatggtacaatt 1905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137171773 cacccaggctttgtagaactcagagtttccactcaccggttgttgacagatggtacaatt 137171714
Query: 1906 ccaaggccctgcccactgatacgcctgtaagtgccacgtgggaaagagagaaacaggacc 1965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137171713 ccaaggccctgcccactgatacgcctgtaagtgccacgtgggaaagagagaaacaggacc 137171654
Query: 1966 caggggctgacaggaacgactgtccattcctttttgctcctttttgtgttcttacacctt 2025
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 137171653 caggggctgacaggaacgactgtccattcctttttgctcctttttgtgtccttacacctt 137171594
Query: 2026 gcggctgcgtgggtatttgtctccttagcacccagtcctgtttccactacagtgtaggat 2085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137171593 gcggctgcgtgggtatttgtctccttagcacccagtcctgtttccactacagtgtaggat 137171534
Query: 2086 ggagaccgggcatcggctcctgangccagtttccaccctcangatctgcccgggaaatga 2145
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 137171533 ggagaccgggcatcggctcctgaggccagtttccaccctcaggatctgcccgggaaatga 137171474
Query: 2146 cagcacgcgttcctttcttccctggtg-aactct-cccccatttattg-ttacatgtcat 2202
|||||| |||||||||||| ||||||| |||||| ||||||||||||| |||||||||||
Sbjct: 137171473 cagcacacgttcctttctt-cctggtgaaactctccccccatttattgtttacatgtcat 137171415
Query: 2203 ccggc-aaatgcggtttctggtg-cttctctcc-atcagttcttt-ctcagaatgagacg 2258
||||| ||||||||||||||||| ||||||||| ||||||||||| |||||| |||||||
Sbjct: 137171414 ccggcaaaatgcggtttctggtgccttctctccaatcagttctttcctcagagtgagacg 137171355
Query: 2259 tacttgtctgcagatt 2274
||||||||||||||||
Sbjct: 137171354 tacttgtctgcagatt 137171339
Score = 624 bits (315), Expect = e-176
Identities = 315/315 (100%)
Strand = Plus / Minus
Query: 1 cgcagccacagtcccggccgtcccccggttggcagagtccgctccggccccagaaagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137233469 cgcagccacagtcccggccgtcccccggttggcagagtccgctccggccccagaaagcaa 137233410
Query: 61 accgccaccatggtgaagatcgtgaccgttaagaccaaggcgtatcaagaccagaagccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137233409 accgccaccatggtgaagatcgtgaccgttaagaccaaggcgtatcaagaccagaagccg 137233350
Query: 121 ggcacgagcgggctgcggaagcgggtgaaggtgtttcagagcagcgccaactacgcggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137233349 ggcacgagcgggctgcggaagcgggtgaaggtgtttcagagcagcgccaactacgcggag 137233290
Query: 181 aatttcatccagagtatcatctccaccgtggagccggcgcatcggcaggaggccaccctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137233289 aatttcatccagagtatcatctccaccgtggagccggcgcatcggcaggaggccaccctg 137233230
Query: 241 gtggtgggcggggacggcaggttttacatgaaggaggccatccagctcatcgtccgcatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137233229 gtggtgggcggggacggcaggttttacatgaaggaggccatccagctcatcgtccgcatc 137233170
Query: 301 gccgccgccaacggg 315
|||||||||||||||
Sbjct: 137233169 gccgccgccaacggg 137233155
Score = 377 bits (190), Expect = e-101
Identities = 193/194 (99%)
Strand = Plus / Minus
Query: 750 agtcgtggggccgtacgtgaagaagatcctgtgtgaggagctgggagcccccgcaaactc 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137195231 agtcgtggggccgtacgtgaagaagatcctgtgtgaggagctgggagcccccgcaaactc 137195172
Query: 810 ggcggtgaactgcgttcccctggaggactttgggggccaccaccctgaccccaacctcac 869
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 137195171 ggcggtgaactgcgttcctctggaggactttgggggccaccaccctgaccccaacctcac 137195112
Query: 870 ctatgctgccgacctggtggagacgatgaagacaggagagcatgattttggggctgcctt 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137195111 ctatgctgccgacctggtggagacgatgaagacaggagagcatgattttggggctgcctt 137195052
Query: 930 tgatggagatgggg 943
||||||||||||||
Sbjct: 137195051 tgatggagatgggg 137195038
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Minus
Query: 1346 ccaggtacgattacgaagaggtggaagctgagggtgccaacaaaatgatgaaggaattgg 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137177768 ccaggtacgattacgaagaggtggaagctgagggtgccaacaaaatgatgaaggaattgg 137177709
Query: 1406 aggctctgatctctgaccgctccttcgtggggaaacagttcccagtgggtgataaagttt 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137177708 aggctctgatctctgaccgctccttcgtggggaaacagttcccagtgggtgataaagttt 137177649
Query: 1466 acactgtggagaaaattgataactttgaatacagtgatcctgtggacggaagcatttcaa 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137177648 acactgtggagaaaattgataactttgaatacagtgatcctgtggacggaagcatttcaa 137177589
Query: 1526 gaaatcagg 1534
|||||||||
Sbjct: 137177588 gaaatcagg 137177580
Score = 329 bits (166), Expect = 4e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 315 gattggtcgcttggttattggacagaatggaatcctctccacccctgctgtatcctgcat 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137200575 gattggtcgcttggttattggacagaatggaatcctctccacccctgctgtatcctgcat 137200516
Query: 375 cattagaaagatcaaagccattggtgggatcatcctgacagccagccacaacccaggagg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137200515 cattagaaagatcaaagccattggtgggatcatcctgacagccagccacaacccaggagg 137200456
Query: 435 acccaatggagattttggaatcaaattcaatatttccaacggaggt 480
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137200455 acccaatggagattttggaatcaaattcaatatttccaacggaggt 137200410
Score = 311 bits (157), Expect = 1e-81
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 942 ggatcgaaacatgattctgggcaagcatgggttctttgtgaacccttcagactccgtggc 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137193526 ggatcgaaacatgattctgggcaagcatgggttctttgtgaacccttcagactccgtggc 137193467
Query: 1002 tgtcatcgctgccaacatcttcagcattccgtatttccagcaaactggggtccgcggctt 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137193466 tgtcatcgctgccaacatcttcagcattccgtatttccagcaaactggggtccgcggctt 137193407
Query: 1062 tgcacgcagcatgcccaccagtggtgccctggaccgg 1098
|||||||||||||||||||||||||||||||||||||
Sbjct: 137193406 tgcacgcagcatgcccaccagtggtgccctggaccgg 137193370
Score = 295 bits (149), Expect = 6e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 477 aggtcctgccccggaagcaataacggataagattttccaaatcagcaagacaattgaaga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137200097 aggtcctgccccggaagcaataacggataagattttccaaatcagcaagacaattgaaga 137200038
Query: 537 atacgcgatttgccctgacctgaaagtagaccttggggttctgggaaagcagcagtttga 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137200037 atacgcgatttgccctgacctgaaagtagaccttggggttctgggaaagcagcagtttga 137199978
Query: 597 cctggaaaacaagttcaaacccttcacag 625
|||||||||||||||||||||||||||||
Sbjct: 137199977 cctggaaaacaagttcaaacccttcacag 137199949
Score = 278 bits (140), Expect = 1e-71
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 1213 ggttctgaccacatccgtgagaaggacggactctgggctgtccttgcttggctctccatc 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137181305 ggttctgaccacatccgtgagaaggacggactctgggctgtccttgcttggctctccatc 137181246
Query: 1273 ctcgccacccgcaagcagagtgtggaggacattctcaaagatcactggcaaaagtatggc 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137181245 ctcgccacccgcaagcagagtgtggaggacattctcaaagatcactggcaaaagtatggc 137181186
Query: 1333 cggaatttcttcaccaggta 1352
||||||||||||||||||||
Sbjct: 137181185 cggaatttcttcaccaggta 137181166
Score = 262 bits (132), Expect = 8e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 620 tcacagtggaaattgtggactcggtggaagcctatgctaccatgctgagaaacatctttg 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137198264 tcacagtggaaattgtggactcggtggaagcctatgctaccatgctgagaaacatctttg 137198205
Query: 680 acttcaatgcactgaaagaactgctttctggtccaaaccgactgaagatccgtatagacg 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137198204 acttcaatgcactgaaagaactgctttctggtccaaaccgactgaagatccgtatagacg 137198145
Query: 740 ccatgcacggag 751
||||||||||||
Sbjct: 137198144 ccatgcacggag 137198133
Score = 254 bits (128), Expect = 2e-64
Identities = 137/140 (97%)
Strand = Plus / Minus
Query: 1531 cagggcttgcgtgtcattttcgcagatggttctcgcatcatctttcgactgagcggcact 1590
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137174795 cagggcttgcgggtcattttcgcagatggttctcgcatcatctttcgactgagcggcact 137174736
Query: 1591 gggagtgcaggcgccaccatccgactgtacatcgacagctatgagaaggacctcgccaag 1650
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 137174735 gggagtgcgggcgccaccatccgactgtacatcgacagctatgagaaggaccttgccaag 137174676
Query: 1651 atctaccaggacccccaggt 1670
||||||||||||||||||||
Sbjct: 137174675 atctaccaggacccccaggt 137174656
Score = 236 bits (119), Expect = 5e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 1097 gggtggctaatgctacaaagattgctttgtacgagaccccaactggttggaagttttttg 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137190516 gggtggctaatgctacaaagattgctttgtacgagaccccaactggttggaagttttttg 137190457
Query: 1157 ggaatctgatggatgcaagcaaactgtccctttgtggggaggagagcttcggaacgggt 1215
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137190456 ggaatctgatggatgcaagcaaactgtccctttgtggggaggagagcttcggaacgggt 137190398
>Sscrofa_Chr16
|| Length = 86898991
Score = 541 bits (273), Expect = e-151
Identities = 592/697 (84%), Gaps = 6/697 (0%)
Strand = Plus / Minus
Query: 952 atgattctgggcaagcatgggttctttgtgaacccttcagactccgtggctgtcatcgct 1011
||||||||||||| || ||||||| || ||||||||||||||||| |||||||||| |||
Sbjct: 18919411 atgattctgggcatgcctgggttccttatgaacccttcagactccatggctgtcattgct 18919352
Query: 1012 gccaacatcttcagcattccgtatttccagcaaactggggtccgcggctttgcacgcagc 1071
|||||||||||||||||||| |||| |||||||| || ||||| |||||||||| |||
Sbjct: 18919351 gccaacatcttcagcattccatattaccagcaaaatgaggtccatggctttgcacacagt 18919292
Query: 1072 atgcccaccagtggtgccctggaccgggtggctaatgctacaaagattgctttgtacgag 1131
| | ||||||||||| ||||||| |||||||||||| ||||||| ||||| |||
Sbjct: 18919291 gttctcaccagtggtgtgctggaccaggtggctaatgccacaaagaccattttgtgtgag 18919232
Query: 1132 accccaactggttggaagttttttgggaatctgatggatgcaagcaaactgtccctttgt 1191
||||||||||| | |||||||||| |||||||||||||||||||||||| |||||| |||
Sbjct: 18919231 accccaactggctagaagtttttttggaatctgatggatgcaagcaaacggtccctctgt 18919172
Query: 1192 ggggaggagagcttcggaacgggttctgaccacatccgtgagaaggacggactctgggct 1251
||||||||||||||| |||| |||||||||||| | ||||||| ||||||| |||||||
Sbjct: 18919171 ggggaggagagcttcagaaccagttctgaccacagctgtgagaatgacggaccctgggct 18919112
Query: 1252 gtccttgcttggctctccatcctcgccacccgcaagcagagtgtggaggacattctcaaa 1311
|||||||||||| |||||||||| |||||| |||| ||||| |||||||| |||||||||
Sbjct: 18919111 gtccttgcttggttctccatcctagccacctgcaaacagagcgtggaggatattctcaaa 18919052
Query: 1312 gatcactggcaaaagtat-----ggccggaatttcttcaccaggtacgattacgaagagg 1366
|||||| ||||| || |||||| | |||||||||||||| ||| || | ||||
Sbjct: 18919051 gatcacctgcaaattgattttggggccgggacttcttcaccaggtatgatgacaaggagg 18918992
Query: 1367 tggaagctgagggtgccaacaaaatgatgaaggaattggaggctctgatctctgaccgct 1426
||||| | |||||| | |||||||||||||||| |||||| ||||| ||||| | ||
Sbjct: 18918991 tggaaaccgagggtacagacaaaatgatgaaggacctggaggtcctgatttctgatcact 18918932
Query: 1427 ccttcgtggggaaacagttcccagtgggtgataaagtttacactgtggagaaaattgata 1486
||||| ||||||||||||||||||||||||| | ||||||||||| |||||||| |||||
Sbjct: 18918931 ccttcatggggaaacagttcccagtgggtgacagagtttacactggggagaaaactgata 18918872
Query: 1487 actttgaatacagtgatcctgtggacggaagcatttcaagaaatcagggcttgcgtgtca 1546
||| |||||||||| |||| ||| | ||| |||||||||||||| ||||||| |||
Sbjct: 18918871 actctgaatacagttatcccacggatgaaagtgtttcaagaaatcagagcttgcggctca 18918812
Query: 1547 ttttcgcagatggttctcgcatcatctttcgactgagcggcactgggagtgcaggcgcca 1606
||| ||||||||||||| |||||||||| ||||||| | || |||||||| ||| |||
Sbjct: 18918811 tttctgcagatggttctcccatcatcttttgactgagtgacagtgggagtgtgggcacca 18918752
Query: 1607 ccatccgactgt-acatcgacagctatgagaaggacc 1642
|||| |||||| | || |||||||||||||||||||
Sbjct: 18918751 ccatttgactgtgatatggacagctatgagaaggacc 18918715
Score = 91.7 bits (46), Expect = 2e-15
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 2034 gtgggtatttgtctccttagcacccagtcctgtttccactacagtgtaggatggagaccg 2093
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
Sbjct: 18918660 gtgggtatttgtctccttagcaccaggtcctgtttccactacagtgtgagatggagactg 18918601
Query: 2094 ggcatc 2099
||||||
Sbjct: 18918600 ggcatc 18918595
>Sscrofa_Chr01
|| Length = 315321322
Score = 79.8 bits (40), Expect = 6e-12
Identities = 85/100 (85%)
Strand = Plus / Plus
Query: 776 tcctgtgtgaggagctgggagcccccgcaaactcggcggtgaactgcgttcccctggagg 835
|||||||||| |||||||||||||| || || || || | ||||| ||||||||||| |
Sbjct: 247980585 tcctgtgtgatgagctgggagccccagccaattctgcaatcaactgtgttcccctggaag 247980644
Query: 836 actttgggggccaccaccctgaccccaacctcacctatgc 875
| ||||||||||| || |||||||||||||| || |||||
Sbjct: 247980645 attttgggggccagcatcctgaccccaacctgacatatgc 247980684
Score = 77.8 bits (39), Expect = 2e-11
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 315 gattggtcgcttggttattggacagaatggaatcctctccacccctgctgtatcctgcat 374
||||||||| || |||||||||||||||| ||| | || || |||||||| ||||||||
Sbjct: 247961313 gattggtcgactgattattggacagaatggcatcttgtcgacacctgctgtttcctgcat 247961372
Query: 375 cattagaaagatcaaagccattggtgggatcatcctgacagccagccacaacccaggagg 434
|| ||||||||||| || |||||| |||||| | |||||||||||| ||| |||||
Sbjct: 247961373 tatcagaaagatcaaggcagctggtggaatcatcttaacagccagccactgccctggagg 247961432
Query: 435 acc 437
|||
Sbjct: 247961433 acc 247961435
Score = 65.9 bits (33), Expect = 9e-08
Identities = 87/105 (82%)
Strand = Plus / Plus
Query: 1216 tctgaccacatccgtgagaaggacggactctgggctgtccttgcttggctctccatcctc 1275
||||| ||| |||| ||||| || || |||||||||||| | | ||||||||||| ||
Sbjct: 248085320 tctgatcacctccgagagaaagatggcctctgggctgtcttggtctggctctccattatc 248085379
Query: 1276 gccacccgcaagcagagtgtggaggacattctcaaagatcactgg 1320
||| |||| ||||||||||||||||| ||| || ||||||||||
Sbjct: 248085380 gccgcccggaagcagagtgtggaggaaattgtccgagatcactgg 248085424
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 62,252,465
Number of extensions: 300
Number of successful extensions: 300
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 17
Length of query: 2364
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2342
Effective length of database: 2,808,408,574
Effective search space: 6577292880308
Effective search space used: 6577292880308
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)