Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012568
(1403 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848457.1| PREDICTED: similar to 26S proteasome non-ATPase... 730 0.0
Alignment gi|XP_533143.2| PREDICTED: similar to 26S proteasome non-ATPase... 629 e-180
Alignment gi|XP_856179.1| PREDICTED: similar to 26S proteasome non-ATPase... 365 e-101
>ref|XP_848457.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 13
(26S proteasome regulatory subunit S11) (26S proteasome
regulatory subunit p40.5) isoform 2 [Canis familiaris].
Length = 376
Score = 730 bits (1884), Expect = 0.0
Identities = 365/376 (97%), Positives = 369/376 (98%)
Frame = +3
Query: 78 MKDVPGFLXXXXXXGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 257
MKDVPGFL GPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY
Sbjct: 1 MKDVPGFLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 60
Query: 258 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 437
ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA
Sbjct: 61 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 120
Query: 438 LKLNIGDLQVTKETIEDVEEMLSSLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 617
LKLNIGDLQVTKETIEDVEEML++LPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL
Sbjct: 121 LKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180
Query: 618 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAF 797
GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLR TDRQWLIDTLYAF
Sbjct: 181 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRSTDRQWLIDTLYAF 240
Query: 798 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA 977
NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA
Sbjct: 241 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA 300
Query: 978 KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIRGMKDRLEFWCTDV 1157
KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQI+GMKDRLEFWCTDV
Sbjct: 301 KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDV 360
Query: 1158 KSMEMLVEHQAHDILT 1205
+SMEMLVEHQAHDILT
Sbjct: 361 RSMEMLVEHQAHDILT 376
>ref|XP_533143.2| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 13
(26S proteasome regulatory subunit S11) (26S proteasome
regulatory subunit p40.5) isoform 1 [Canis familiaris].
Length = 327
Score = 629 bits (1621), Expect = e-180
Identities = 317/326 (97%), Positives = 319/326 (97%)
Frame = +3
Query: 78 MKDVPGFLXXXXXXGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 257
MKDVPGFL GPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY
Sbjct: 1 MKDVPGFLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 60
Query: 258 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 437
ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA
Sbjct: 61 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 120
Query: 438 LKLNIGDLQVTKETIEDVEEMLSSLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 617
LKLNIGDLQVTKETIEDVEEML++LPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL
Sbjct: 121 LKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180
Query: 618 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAF 797
GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLR TDRQWLIDTLYAF
Sbjct: 181 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRSTDRQWLIDTLYAF 240
Query: 798 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA 977
NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA
Sbjct: 241 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA 300
Query: 978 KITVNEVELLVMKALSVGLVKGSIDE 1055
KITVNEVELLVMKALSVGLVKGSIDE
Sbjct: 301 KITVNEVELLVMKALSVGLVKGSIDE 326
>ref|XP_856179.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit
13 (26S proteasome regulatory subunit S11) (26S
proteasome regulatory subunit p40.5) isoform 3 [Canis
familiaris].
Length = 239
Score = 365 bits (938), Expect = e-101
Identities = 181/189 (95%), Positives = 183/189 (96%)
Frame = +3
Query: 78 MKDVPGFLXXXXXXGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 257
MKDVPGFL GPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY
Sbjct: 1 MKDVPGFLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 60
Query: 258 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 437
ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA
Sbjct: 61 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 120
Query: 438 LKLNIGDLQVTKETIEDVEEMLSSLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 617
LKLNIGDLQVTKETIEDVEEML++LPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL
Sbjct: 121 LKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180
Query: 618 GCVDIKDLP 644
GCVDIKDLP
Sbjct: 181 GCVDIKDLP 189
Score = 73.6 bits (179), Expect = 4e-13
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +2
Query: 1112 DQGHEGPPGVLVHRREEHGDAGGAPGPRHPHL 1207
DQG EGPPGVLVHRREEHGDAGGAPGPRHPHL
Sbjct: 190 DQGDEGPPGVLVHRREEHGDAGGAPGPRHPHL 221
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,230,615
Number of extensions: 1548055
Number of successful extensions: 5988
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5974
Number of HSP's successfully gapped: 4
Length of query: 467
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 361
Effective length of database: 15,340,888
Effective search space: 5538060568
Effective search space used: 5538060568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012568
(1403 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019703.1| 26S proteasome non-ATPase regulatory subunit... 731 0.0
>ref|NP_001019703.1| 26S proteasome non-ATPase regulatory subunit 13 [Bos taurus].
Length = 376
Score = 731 bits (1886), Expect = 0.0
Identities = 365/376 (97%), Positives = 370/376 (98%)
Frame = +3
Query: 78 MKDVPGFLXXXXXXGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 257
MKDVPGFL GPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY
Sbjct: 1 MKDVPGFLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 60
Query: 258 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 437
ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVAL+FLEKTREKVKSSDEAVILCKTAIGA
Sbjct: 61 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALSFLEKTREKVKSSDEAVILCKTAIGA 120
Query: 438 LKLNIGDLQVTKETIEDVEEMLSSLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 617
LKLNIGDLQVTKETIEDVEEMLS+LPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL
Sbjct: 121 LKLNIGDLQVTKETIEDVEEMLSNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180
Query: 618 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAF 797
GCVDIKDLPVSEQQERAFTLGLAGLLG+GVFNFGELLMHPVLESLRDTDRQWLIDTLYAF
Sbjct: 181 GCVDIKDLPVSEQQERAFTLGLAGLLGDGVFNFGELLMHPVLESLRDTDRQWLIDTLYAF 240
Query: 798 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA 977
NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIA+SA
Sbjct: 241 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIARSA 300
Query: 978 KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIRGMKDRLEFWCTDV 1157
KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQI+GMKDRLEFWCTDV
Sbjct: 301 KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDV 360
Query: 1158 KSMEMLVEHQAHDILT 1205
KSMEMLVEHQAHDILT
Sbjct: 361 KSMEMLVEHQAHDILT 376
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,917,587
Number of extensions: 1501088
Number of successful extensions: 5647
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5600
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 361
Effective length of database: 14,174,046
Effective search space: 5116830606
Effective search space used: 5116830606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012568
(1403 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124275.1| PREDICTED: 26S proteasome non-ATPase regulat... 737 0.0
>ref|XP_003124275.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 13-like [Sus
scrofa].
Length = 376
Score = 737 bits (1902), Expect = 0.0
Identities = 370/376 (98%), Positives = 370/376 (98%)
Frame = +3
Query: 78 MKDVPGFLXXXXXXGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 257
MKDVPGFL GPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY
Sbjct: 1 MKDVPGFLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 60
Query: 258 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 437
ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA
Sbjct: 61 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 120
Query: 438 LKLNIGDLQVTKETIEDVEEMLSSLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 617
LKLNIGDLQVTKETIEDVEEMLSSLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL
Sbjct: 121 LKLNIGDLQVTKETIEDVEEMLSSLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180
Query: 618 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAF 797
GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAF
Sbjct: 181 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAF 240
Query: 798 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA 977
NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA
Sbjct: 241 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA 300
Query: 978 KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIRGMKDRLEFWCTDV 1157
KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIRGMKDRLEFWCTDV
Sbjct: 301 KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIRGMKDRLEFWCTDV 360
Query: 1158 KSMEMLVEHQAHDILT 1205
KSMEMLVEHQAHDILT
Sbjct: 361 KSMEMLVEHQAHDILT 376
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,717,041
Number of extensions: 963131
Number of successful extensions: 3699
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3680
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 364
Effective length of database: 8,779,541
Effective search space: 3195752924
Effective search space used: 3195752924
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012568
(1403 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036005.1| 26S proteasome non-ATPase regulatory subunit 13... 714 0.0
>ref|NP_036005.1| 26S proteasome non-ATPase regulatory subunit 13 [Mus musculus].
Length = 376
Score = 714 bits (1842), Expect = 0.0
Identities = 357/376 (94%), Positives = 364/376 (96%)
Frame = +3
Query: 78 MKDVPGFLXXXXXXGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 257
MKDVP FL GPGQAAVWHRLEELYTKKLWHQLTL+VLDFVQDPCFAQGDGLIKLY
Sbjct: 1 MKDVPAFLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLEVLDFVQDPCFAQGDGLIKLY 60
Query: 258 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 437
ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA
Sbjct: 61 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 120
Query: 438 LKLNIGDLQVTKETIEDVEEMLSSLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 617
LKLNIGDLQ TKETIEDVEEML++LPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL
Sbjct: 121 LKLNIGDLQATKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180
Query: 618 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAF 797
GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAF
Sbjct: 181 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAF 240
Query: 798 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA 977
NSG V+RFQTLK AWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA
Sbjct: 241 NSGAVDRFQTLKCAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA 300
Query: 978 KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIRGMKDRLEFWCTDV 1157
KITVN+VELLVMKALSVGLV+GSIDEVDKRVHMTWVQPRVLDLQQI+GMKDRLE WCTDV
Sbjct: 301 KITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLELWCTDV 360
Query: 1158 KSMEMLVEHQAHDILT 1205
KSMEMLVEHQA DILT
Sbjct: 361 KSMEMLVEHQAQDILT 376
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,717,689
Number of extensions: 1263789
Number of successful extensions: 4644
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4613
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 362
Effective length of database: 12,463,779
Effective search space: 4511887998
Effective search space used: 4511887998
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012568
(1403 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002808.3| 26S proteasome non-ATPase regulatory subunit 13... 729 0.0
Alignment gi|NP_787128.2| 26S proteasome non-ATPase regulatory subunit 13... 638 0.0
>ref|NP_002808.3| 26S proteasome non-ATPase regulatory subunit 13 isoform 1 [Homo
sapiens].
Length = 376
Score = 729 bits (1883), Expect = 0.0
Identities = 365/376 (97%), Positives = 369/376 (98%)
Frame = +3
Query: 78 MKDVPGFLXXXXXXGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 257
MKDVPGFL GPGQ AVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY
Sbjct: 1 MKDVPGFLQQSQNSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 60
Query: 258 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 437
ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA
Sbjct: 61 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 120
Query: 438 LKLNIGDLQVTKETIEDVEEMLSSLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 617
LKLNIGDLQVTKETIEDVEEML++LPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL
Sbjct: 121 LKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180
Query: 618 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAF 797
GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLR+TDRQWLIDTLYAF
Sbjct: 181 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAF 240
Query: 798 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA 977
NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA
Sbjct: 241 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA 300
Query: 978 KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIRGMKDRLEFWCTDV 1157
KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQI+GMKDRLEFWCTDV
Sbjct: 301 KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDV 360
Query: 1158 KSMEMLVEHQAHDILT 1205
KSMEMLVEHQAHDILT
Sbjct: 361 KSMEMLVEHQAHDILT 376
>ref|NP_787128.2| 26S proteasome non-ATPase regulatory subunit 13 isoform 2 [Homo
sapiens].
Length = 378
Score = 638 bits (1645), Expect = 0.0
Identities = 333/388 (85%), Positives = 344/388 (88%), Gaps = 12/388 (3%)
Frame = +3
Query: 78 MKDVPGFLXXXXXXGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 257
MKDVPGFL GPGQ AVWHRLEELYTK L++ + G L ++
Sbjct: 1 MKDVPGFLQQSQNSGPGQPAVWHRLEELYTKNFMKTLSVNL---------NTGKSLSSVF 51
Query: 258 ENFISE------------FEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSD 401
+F +E F RVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSD
Sbjct: 52 -HFENECIDARRCSKAGGFYFRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSD 110
Query: 402 EAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLSSLPGVTSVHSRFYDLSSKYYQTIGN 581
EAVILCKTAIGALKLNIGDLQVTKETIEDVEEML++LPGVTSVHSRFYDLSSKYYQTIGN
Sbjct: 111 EAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGN 170
Query: 582 HASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDT 761
HASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLR+T
Sbjct: 171 HASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNT 230
Query: 762 DRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANH 941
DRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANH
Sbjct: 231 DRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANH 290
Query: 942 RQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIRG 1121
RQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQI+G
Sbjct: 291 RQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKG 350
Query: 1122 MKDRLEFWCTDVKSMEMLVEHQAHDILT 1205
MKDRLEFWCTDVKSMEMLVEHQAHDILT
Sbjct: 351 MKDRLEFWCTDVKSMEMLVEHQAHDILT 378
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,212,158
Number of extensions: 1516910
Number of successful extensions: 5621
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5600
Number of HSP's successfully gapped: 2
Length of query: 467
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 361
Effective length of database: 14,802,980
Effective search space: 5343875780
Effective search space used: 5343875780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012568
(1403 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 553 e-155
>Sscrofa_Chr02
|| Length = 162569375
Score = 553 bits (279), Expect = e-155
Identities = 287/290 (98%)
Strand = Plus / Minus
Query: 1110 cagatcaggggcatgaaggaccgcctggagttctggtgcaccgacgtgaagagcatggag 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162156272 cagatcaggggcatgaaggaccgcctggagttctggtgcaccgacgtgaagagcatggag 162156213
Query: 1170 atgctggtggagcaccaggcccacgacatcctcacctaggcctctgcctgcgcttggctg 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162156212 atgctggtggagcaccaggcccacgacatcctcacctaggcctctgcctgcgcttggctg 162156153
Query: 1230 tggagagctgtttcgcggccgacgaacctggcggctgagaagatctgcatttaattgggg 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162156152 tggagagctgtttcgcggccgacgaacctggcggctgagaagatctgcatttaattgggg 162156093
Query: 1290 tgggggctgggatttagtttggactagggactgntctctctgtggaaacaggcctgtcac 1349
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162156092 tgggggctgggattcagtttggactagggactgttctctctgtggaaacaggcctgtcac 162156033
Query: 1350 tgacaggggcgcccagccacaggcagaagcctccttgatgaatgtcactg 1399
|||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 162156032 tgacaggggcgcccagccacaggcagaagcctccttgatggatgtcactg 162155983
Score = 345 bits (174), Expect = 4e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 472 aggaaacaattgaagacgtggaggaaatgctcagcagcctccccggtgtaacatccgttc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162161237 aggaaacaattgaagacgtggaggaaatgctcagcagcctccccggtgtaacatccgttc 162161178
Query: 532 acagccgtttctacgacctctccagcaaatactaccagaccatcgggaaccacgcttcct 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162161177 acagccgtttctacgacctctccagcaaatactaccagaccatcgggaaccacgcttcct 162161118
Query: 592 actacaaagacgctctgcggtttctcggctgtgtagacatcaaggatctgccag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162161117 actacaaagacgctctgcggtttctcggctgtgtagacatcaaggatctgccag 162161064
Score = 345 bits (174), Expect = 4e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 1 gagtgagcacttccggcggccattccggcggcccagacatctctgcggtagcgctgtcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162169556 gagtgagcacttccggcggccattccggcggcccagacatctctgcggtagcgctgtcgc 162169497
Query: 61 ggaggcttcttgtcgtcatgaaggacgtacctggcttcttacagcagagccaaagctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162169496 ggaggcttcttgtcgtcatgaaggacgtacctggcttcttacagcagagccaaagctctg 162169437
Query: 121 ggcccggccaggccgccgtgtggcaccgtctggaggagctctacacaaagaagt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162169436 ggcccggccaggccgccgtgtggcaccgtctggaggagctctacacaaagaagt 162169383
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 726 ctcatgcaccccgtgctggagtcgctgagggacaccgaccggcagtggctgatcgacacc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162159620 ctcatgcaccccgtgctggagtcgctgagggacaccgaccggcagtggctgatcgacacc 162159561
Query: 786 ctttatgcctttaacagcggcaacgtagagcgattccagactctgaagaccgcctggggc 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162159560 ctttatgcctttaacagcggcaacgtagagcgattccagactctgaagaccgcctggggc 162159501
Query: 846 cagcag 851
||||||
Sbjct: 162159500 cagcag 162159495
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 994 aggtggagttgctggtgatgaaagccctctcagtgggactggtgaaaggcagtattgatg 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162156929 aggtggagttgctggtgatgaaagccctctcagtgggactggtgaaaggcagtattgatg 162156870
Query: 1054 aagtggataagcgggttcacatgacctgggtgcagccccgcgtgttggatttgcaacag 1112
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162156869 aagtggataagcgggttcacatgacctgggtgcagccccgcgtgttggatttgcaacag 162156811
Score = 178 bits (90), Expect = 5e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 385 aggtgaagagcagtgatgaggcagtgatcctgtgcaaaactgcaattggagctctgaaat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162162902 aggtgaagagcagtgatgaggcagtgatcctgtgcaaaactgcaattggagctctgaaat 162162843
Query: 445 taaatatcggggacctgcaagttacgaagg 474
||||||||||||||||||||||||||||||
Sbjct: 162162842 taaatatcggggacctgcaagttacgaagg 162162813
Score = 168 bits (85), Expect = 5e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 913 agatgactttcacacgacctgccaatcatagacaactcacttttgaagaaattgccaaaa 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162157199 agatgactttcacacgacctgccaatcatagacaactcacttttgaagaaattgccaaaa 162157140
Query: 973 gtgccaaaatcaccgtgaatgaggt 997
|||||||||||||||||||||||||
Sbjct: 162157139 gtgccaaaatcaccgtgaatgaggt 162157115
Score = 165 bits (83), Expect = 8e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 643 cagtgtctgagcagcaggagagagctttcacactgggactagcaggacttctcggcgagg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162159782 cagtgtctgagcagcaggagagagctttcacactgggactagcaggacttctcggcgagg 162159723
Query: 703 gagtttttaactttggagaactc 725
|||||||||||||||||||||||
Sbjct: 162159722 gagtttttaactttggagaactc 162159700
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 173 gttgtggcatcagctgacacttcaggtgcttgattttgtgcaggacccgtgctttgccca 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162167740 gttgtggcatcagctgacacttcaggtgcttgattttgtgcaggacccgtgctttgccca 162167681
Query: 233 aggagatggtctcattaag 251
|||||||||||||||||||
Sbjct: 162167680 aggagatggtctcattaag 162167662
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 849 cagcctgatttagcagccaacgaagcccaacttctgaggaaaattcagttgctgtgcctc 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162158014 cagcctgatttagcagccaacgaagcccaacttctgaggaaaattcagttgctgtgcctc 162157955
Query: 909 atggag 914
||||||
Sbjct: 162157954 atggag 162157949
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 284 cagggtgaaccctctatctctggtagaaatcattcttcatgtagttagacagatgactg 342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162163417 cagggtgaaccctctatctctggtagaaatcattcttcatgtagttagacagatgactg 162163359
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 342 gatcctaatgtggctcttacttttctggaaaagactcgtgagaaggt 388
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162163134 gatcctaatgtggctcttacttttctggaaaagactcgtgagaaggt 162163088
Score = 75.8 bits (38), Expect = 6e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 250 agctttacgaaaacttcatcagtgaatttgaacacagg 287
||||||||||||||||||||||||||||||||||||||
Sbjct: 162163535 agctttacgaaaacttcatcagtgaatttgaacacagg 162163498
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,403,509
Number of extensions: 218
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 13
Length of query: 1403
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1382
Effective length of database: 2,808,413,156
Effective search space: 3881226981592
Effective search space used: 3881226981592
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)