Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012583
(1158 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003316.1| ras-related protein Rab-7a [Canis lupus fami... 413 e-115
Alignment gi|XP_538124.1| PREDICTED: similar to Ras-related protein Rab-9... 211 1e-54
Alignment gi|NP_001183960.1| ras-related protein Rab-9A [Canis lupus fami... 208 9e-54
Alignment gi|XP_545693.2| PREDICTED: similar to Ras-related protein Rab-7... 194 2e-49
Alignment gi|XP_848668.1| PREDICTED: similar to Ras-related protein Rab-7... 194 2e-49
Alignment gi|XP_855128.1| PREDICTED: similar to Ras-related protein Rab-1... 134 1e-31
Alignment gi|NP_001003261.1| ras-related protein Rab-5C [Canis lupus fami... 133 3e-31
Alignment gi|XP_531627.2| PREDICTED: similar to RAB5B, member RAS oncogen... 132 6e-31
Alignment gi|XP_854399.1| PREDICTED: similar to RAB11B, member RAS oncoge... 132 8e-31
Alignment gi|NP_001003276.1| ras-related protein Rab-11A [Canis lupus fam... 131 1e-30
>ref|NP_001003316.1| ras-related protein Rab-7a [Canis lupus familiaris].
Length = 207
Score = 413 bits (1061), Expect = e-115
Identities = 204/207 (98%), Positives = 205/207 (99%)
Frame = +1
Query: 229 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 408
MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 409 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 588
IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 589 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 768
VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 769 ELYNEFPEPIKLDKNDRAKPPAETCSC 849
ELYNEFPEPIKLDKNDRAK AE+CSC
Sbjct: 181 ELYNEFPEPIKLDKNDRAKTSAESCSC 207
>ref|XP_538124.1| PREDICTED: similar to Ras-related protein Rab-9B (Rab-9L)
(RAB9-like protein) [Canis familiaris].
Length = 201
Score = 211 bits (536), Expect = 1e-54
Identities = 101/179 (56%), Positives = 128/179 (71%)
Frame = +1
Query: 235 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 414
S K +LLKVI+LGD GVGK+SLMN+YV KF +Q TIG +FL +++ VD R VT+QIW
Sbjct: 2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 415 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 594
DTAGQERF+SL FYRGADCC+L F V +F+ L +W+ EF+ A +DPE+FPFVV
Sbjct: 62 DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV 121
Query: 595 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 771
LGNK+D E+RQV T+ AQAWC + PY ETSAK+ NV AF+ R L E ++E
Sbjct: 122 LGNKVDKEDRQVTTEEAQAWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLE 180
>ref|NP_001183960.1| ras-related protein Rab-9A [Canis lupus familiaris].
Length = 201
Score = 208 bits (529), Expect = 9e-54
Identities = 98/173 (56%), Positives = 122/173 (70%)
Frame = +1
Query: 241 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 420
K L KVI+LGD GVGK+SLMN+YV KF Q TIG +FL K++ VD VTMQIWDT
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 421 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 600
AGQERF+SL FYRG+DCC+L F V +F+ L +W+ EF+ A ++PE+FPFV+LG
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 601 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 759
NKID+ RQV+T+ AQAWC + PYFETSAK+A NV AF+ R L E
Sbjct: 124 NKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176
>ref|XP_545693.2| PREDICTED: similar to Ras-related protein Rab-7b isoform 1 [Canis
familiaris].
Length = 200
Score = 194 bits (492), Expect = 2e-49
Identities = 100/199 (50%), Positives = 137/199 (68%)
Frame = +1
Query: 229 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 408
M RKKV LK+II+G GVGKTSL++QYV+K F Y+ T+GA L+K +++DD + +Q
Sbjct: 1 MNPRKKVDLKLIIIGALGVGKTSLLHQYVHKTFYEDYQTTLGASILSKIIILDDTTLKLQ 60
Query: 409 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 588
IWDT GQERF+S+ FY+G+D C+L FDVT +F+ LD+WR + L + P +P ++P
Sbjct: 61 IWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDTWRGDVLAKTIPMEP-SYPM 119
Query: 589 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 768
VVLGNKIDL +RQV + AQ WC K +IPYFE SAK INV QAF+ +A AL + +
Sbjct: 120 VVLGNKIDLADRQVPQEVAQGWCKEK-DIPYFEVSAKNDINVVQAFEMLASRALSRYQSI 178
Query: 769 ELYNEFPEPIKLDKNDRAK 825
L N + IKL D+++
Sbjct: 179 -LENYLTDSIKLSPEDQSR 196
>ref|XP_848668.1| PREDICTED: similar to Ras-related protein Rab-7b isoform 2 [Canis
familiaris].
Length = 200
Score = 194 bits (492), Expect = 2e-49
Identities = 100/199 (50%), Positives = 137/199 (68%)
Frame = +1
Query: 229 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 408
M RKKV LK+II+G GVGKTSL++QYV+K F Y+ T+GA L+K +++DD + +Q
Sbjct: 1 MNPRKKVDLKLIIIGALGVGKTSLLHQYVHKTFYEDYQTTLGASILSKIIILDDTTLKLQ 60
Query: 409 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 588
IWDT GQERF+S+ FY+G+D C+L FDVT +F+ LD+WR + L + P +P ++P
Sbjct: 61 IWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDTWRGDVLAKTIPMEP-SYPM 119
Query: 589 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 768
VVLGNKIDL +RQV + AQ WC K +IPYFE SAK INV QAF+ +A AL + +
Sbjct: 120 VVLGNKIDLADRQVPQEVAQGWCKEK-DIPYFEVSAKNDINVVQAFEMLASRALSRYQSI 178
Query: 769 ELYNEFPEPIKLDKNDRAK 825
L N + IKL D+++
Sbjct: 179 -LENYLTDSIKLSPEDQSR 196
>ref|XP_855128.1| PREDICTED: similar to Ras-related protein Rab-13 [Canis
familiaris].
Length = 248
Score = 134 bits (338), Expect = 1e-31
Identities = 70/185 (37%), Positives = 110/185 (59%)
Frame = +1
Query: 196 PGAQRSGRV*RMTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE 375
PGA V M L K++++GDSGVGKT L+ ++ F+N Y +TIG DF +
Sbjct: 35 PGAAPGSPVSAMAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDSFNNTYISTIGIDFKIRT 94
Query: 376 VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 555
V V+ + + +Q+WDTAGQERF+++ A+YRGA +LV+D+T +F+ + +W
Sbjct: 95 VDVEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKEN 154
Query: 556 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 735
AS ++LGNK D+E ++ K ++ I +FETSAK + NV++AF ++
Sbjct: 155 AS----AGVERLLLGNKCDMEAKRKVQKEQAIKLAREHGIRFFETSAKSSTNVDEAFSSL 210
Query: 736 ARNAL 750
AR+ L
Sbjct: 211 ARDIL 215
>ref|NP_001003261.1| ras-related protein Rab-5C [Canis lupus familiaris].
Length = 216
Score = 133 bits (335), Expect = 3e-31
Identities = 73/171 (42%), Positives = 105/171 (61%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 435
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +DD V +IWDTAGQER
Sbjct: 23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 82
Query: 436 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 615
+ SL +YRGA ++V+D+T +TF +W E QASP N + GNK DL
Sbjct: 83 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKADL 138
Query: 616 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 765
R V + AQA+ N++ + ETSAK A+NV + F IA+ K E +
Sbjct: 139 ASKRAVEFQEAQAYA-DDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQ 188
>ref|XP_531627.2| PREDICTED: similar to RAB5B, member RAS oncogene family isoform 1
[Canis familiaris].
Length = 215
Score = 132 bits (332), Expect = 6e-31
Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 435
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +DD V +IWDTAGQER
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 81
Query: 436 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 615
+ SL +YRGA ++V+D+T TF +W E QASP + + GNK DL
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASP----SIVIALAGNKADL 137
Query: 616 EN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 765
N R V + AQA+ N++ + ETSAK A+NV F IA+ K E +
Sbjct: 138 ANKRMVEYEEAQAYA-DDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 187
>ref|XP_854399.1| PREDICTED: similar to RAB11B, member RAS oncogene family [Canis
familiaris].
Length = 410
Score = 132 bits (331), Expect = 8e-31
Identities = 66/166 (39%), Positives = 110/166 (66%), Gaps = 1/166 (0%)
Frame = +1
Query: 241 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 420
K LL+++++GDSGVGK++L++++ +F+ + K+TIG +F T+ + VD + + QIWDT
Sbjct: 200 KTYLLRLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 259
Query: 421 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 600
AGQER++++ A+YRGA +LV+D+ T++ ++ W E A N +++G
Sbjct: 260 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVG 315
Query: 601 NKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 735
NK DL + R V T A+A+ KNN+ + ETSA ++ NVE+AF+ I
Sbjct: 316 NKSDLRHLRAVPTDEARAFA-EKNNLSFIETSALDSTNVEEAFKNI 360
>ref|NP_001003276.1| ras-related protein Rab-11A [Canis lupus familiaris].
Length = 216
Score = 131 bits (330), Expect = 1e-30
Identities = 67/163 (41%), Positives = 107/163 (65%), Gaps = 1/163 (0%)
Frame = +1
Query: 250 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 429
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ + VD + + QIWDTAGQ
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
Query: 430 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 609
ER++++ A+YRGA +LV+D+ T++ ++ W E A N +++GNK
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKS 126
Query: 610 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 735
DL + R V T A+A+ KN + + ETSA ++ NVE AFQTI
Sbjct: 127 DLRHLRAVPTDEARAFA-EKNGLSFIETSALDSTNVEAAFQTI 168
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,577,092
Number of extensions: 1288965
Number of successful extensions: 6563
Number of sequences better than 1.0e-05: 152
Number of HSP's gapped: 6275
Number of HSP's successfully gapped: 154
Length of query: 386
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 281
Effective length of database: 15,374,224
Effective search space: 4320156944
Effective search space used: 4320156944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012583
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012583
(1158 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030253.1| ras-related protein Rab-7a [Bos taurus]. 412 e-115
Alignment gi|NP_001069009.1| ras-related protein Rab-9B [Bos taurus]. 209 3e-54
Alignment gi|NP_001069006.1| ras-related protein Rab-9A [Bos taurus]. 205 7e-53
Alignment gi|NP_001071481.1| ras-related protein Rab-7b [Bos taurus]. 187 2e-47
Alignment gi|NP_001029915.1| ras-related protein Rab-5C [Bos taurus]. 133 3e-31
Alignment gi|NP_001193120.1| ras-related protein Rab-5B [Bos taurus]. 132 6e-31
Alignment gi|XP_002687629.1| PREDICTED: RAB5B, member RAS oncogene family... 132 6e-31
Alignment gi|NP_001019711.1| ras-related protein Rab-13 [Bos taurus]. 132 8e-31
Alignment gi|NP_001030468.1| ras-related protein Rab-11B [Bos taurus]. 131 1e-30
Alignment gi|NP_001069654.1| ras-related protein Rab-5A [Bos taurus]. 131 1e-30
>ref|NP_001030253.1| ras-related protein Rab-7a [Bos taurus].
Length = 207
Score = 412 bits (1058), Expect = e-115
Identities = 203/207 (98%), Positives = 203/207 (98%)
Frame = +1
Query: 229 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 408
MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 409 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 588
IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 589 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 768
VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI RNALKQETEV
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIVRNALKQETEV 180
Query: 769 ELYNEFPEPIKLDKNDRAKPPAETCSC 849
ELYNEFPEPIKLDKNDR KP AE CSC
Sbjct: 181 ELYNEFPEPIKLDKNDRTKPSAEGCSC 207
>ref|NP_001069009.1| ras-related protein Rab-9B [Bos taurus].
Length = 201
Score = 209 bits (533), Expect = 3e-54
Identities = 100/179 (55%), Positives = 128/179 (71%)
Frame = +1
Query: 235 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 414
S K +LLKVI+LGD GVGK+SLMN+YV KF +Q TIG +FL +++ VD R VT+QIW
Sbjct: 2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 415 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 594
DTAGQERF+SL FYRGADCC+L F V +F+ L +W+ EF+ A +DPE+FPFVV
Sbjct: 62 DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV 121
Query: 595 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 771
LGNK+D E+RQV T+ AQ+WC + PY ETSAK+ NV AF+ R L E ++E
Sbjct: 122 LGNKVDKEDRQVTTEEAQSWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLE 180
>ref|NP_001069006.1| ras-related protein Rab-9A [Bos taurus].
Length = 203
Score = 205 bits (521), Expect = 7e-53
Identities = 96/173 (55%), Positives = 121/173 (69%)
Frame = +1
Query: 241 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 420
K L KVI+LGD GVGK+SLMN+YV KF Q TIG +FL K++ VD VTMQIWDT
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDAQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 421 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 600
AGQERF+SL FYRG+DCC+L F V +F+ L +W+ EF+ A ++PE+FPFV+LG
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 601 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 759
NK+D+ RQV+ + AQAWC + PYFETSAK+A NV AF+ R L E
Sbjct: 124 NKVDISERQVSAEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176
>ref|NP_001071481.1| ras-related protein Rab-7b [Bos taurus].
Length = 200
Score = 187 bits (475), Expect = 2e-47
Identities = 98/199 (49%), Positives = 136/199 (68%)
Frame = +1
Query: 229 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 408
M RKKV LK+II+G GVGKTSL+++YV+K F Y+ T+GA L+K ++++D + +Q
Sbjct: 1 MNPRKKVDLKLIIIGALGVGKTSLLHRYVHKTFYEDYQTTLGASILSKIIILEDTTLKLQ 60
Query: 409 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 588
IWDT GQERF+S+ FY+G+D CVL FDVT +F+ L++WR + L + P + + +P
Sbjct: 61 IWDTGGQERFRSMVSTFYKGSDGCVLAFDVTDLESFEALETWRGDVLAKTIPME-QPYPM 119
Query: 589 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 768
VVLGNKIDLE+RQV + AQ WC K +IPYFE SAK INV QAF+ +A AL + +
Sbjct: 120 VVLGNKIDLEDRQVPQEVAQGWCKEK-DIPYFEVSAKNDINVVQAFEMLASRALSRYRSI 178
Query: 769 ELYNEFPEPIKLDKNDRAK 825
L + + IKL D+ K
Sbjct: 179 -LESYLTDSIKLSPEDQPK 196
>ref|NP_001029915.1| ras-related protein Rab-5C [Bos taurus].
Length = 216
Score = 133 bits (335), Expect = 3e-31
Identities = 73/171 (42%), Positives = 105/171 (61%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 435
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +DD V +IWDTAGQER
Sbjct: 23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 82
Query: 436 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 615
+ SL +YRGA ++V+D+T +TF +W E QASP N + GNK DL
Sbjct: 83 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKADL 138
Query: 616 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 765
R V + AQA+ N++ + ETSAK A+NV + F IA+ K E +
Sbjct: 139 ASKRAVEFQEAQAYA-EDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQ 188
>ref|NP_001193120.1| ras-related protein Rab-5B [Bos taurus].
Length = 215
Score = 132 bits (332), Expect = 6e-31
Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 435
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +DD V +IWDTAGQER
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 81
Query: 436 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 615
+ SL +YRGA ++V+D+T TF +W E QASP + + GNK DL
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASP----SIVIALAGNKADL 137
Query: 616 EN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 765
N R V + AQA+ N++ + ETSAK A+NV F IA+ K E +
Sbjct: 138 ANKRMVEYEEAQAYA-DDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 187
>ref|XP_002687629.1| PREDICTED: RAB5B, member RAS oncogene family-like [Bos taurus].
Length = 215
Score = 132 bits (332), Expect = 6e-31
Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 435
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +DD V +IWDTAGQER
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 81
Query: 436 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 615
+ SL +YRGA ++V+D+T TF +W E QASP + + GNK DL
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASP----SIVIALAGNKADL 137
Query: 616 EN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 765
N R V + AQA+ N++ + ETSAK A+NV F IA+ K E +
Sbjct: 138 ANKRMVEYEEAQAYA-DDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 187
>ref|NP_001019711.1| ras-related protein Rab-13 [Bos taurus].
Length = 203
Score = 132 bits (331), Expect = 8e-31
Identities = 67/182 (36%), Positives = 110/182 (60%)
Frame = +1
Query: 250 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 429
L K++++GDSGVGKT L+ ++ F+N Y +TIG DF + V ++ + + +Q+WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQ 67
Query: 430 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 609
ERF+++ A+YRGA +LV+D+T +F+ + +W AS ++LGNK
Sbjct: 68 ERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS----AGVERLLLGNKC 123
Query: 610 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFP 789
D+E ++ K ++ I +FETSAK ++NV++AF ++AR+ L + L N
Sbjct: 124 DMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLKNNNK 183
Query: 790 EP 795
P
Sbjct: 184 PP 185
>ref|NP_001030468.1| ras-related protein Rab-11B [Bos taurus].
Length = 218
Score = 131 bits (330), Expect = 1e-30
Identities = 66/163 (40%), Positives = 108/163 (66%), Gaps = 1/163 (0%)
Frame = +1
Query: 250 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 429
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ + VD + + QIWDTAGQ
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
Query: 430 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 609
ER++++ A+YRGA +LV+D+ T++ ++ W E A N +++GNK
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKS 126
Query: 610 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 735
DL + R V T A+A+ KNN+ + ETSA ++ NVE+AF+ I
Sbjct: 127 DLRHLRAVPTDEARAFA-EKNNLSFIETSALDSTNVEEAFKNI 168
>ref|NP_001069654.1| ras-related protein Rab-5A [Bos taurus].
Length = 215
Score = 131 bits (329), Expect = 1e-30
Identities = 73/179 (40%), Positives = 107/179 (59%), Gaps = 1/179 (0%)
Frame = +1
Query: 232 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 411
T K K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +DD V +I
Sbjct: 14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73
Query: 412 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 591
WDTAGQER+ SL +YRGA ++V+D+T +F +W E QASP N
Sbjct: 74 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIA 129
Query: 592 VLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 765
+ GNK DL N R V + AQ++ N++ + ETSAK ++NV + F IA+ K E +
Sbjct: 130 LSGNKADLANKRAVDFQEAQSYA-DDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ 187
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,735,602
Number of extensions: 1269405
Number of successful extensions: 6454
Number of sequences better than 1.0e-05: 163
Number of HSP's gapped: 6155
Number of HSP's successfully gapped: 163
Length of query: 386
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,240,222
Effective search space: 4015742604
Effective search space used: 4015742604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012583
(1158 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358593.1| PREDICTED: ras-related protein Rab-7a-like [... 421 e-118
Alignment gi|XP_003135320.1| PREDICTED: ras-related protein Rab-9B-like [... 211 8e-55
Alignment gi|XP_003134983.1| PREDICTED: ras-related protein Rab-9A-like i... 207 1e-53
Alignment gi|XP_003360277.1| PREDICTED: ras-related protein Rab-9A-like i... 207 1e-53
Alignment gi|XP_003360276.1| PREDICTED: ras-related protein Rab-9A-like i... 207 1e-53
Alignment gi|XP_003357460.1| PREDICTED: ras-related protein Rab-7b-like [... 191 5e-49
Alignment gi|XP_003131451.1| PREDICTED: ras-related protein Rab-5C-like [... 133 2e-31
Alignment gi|XP_003360910.1| PREDICTED: ras-related protein Rab-5B-like [... 132 5e-31
Alignment gi|XP_001927266.2| PREDICTED: ras-related protein Rab-13 [Sus s... 131 6e-31
Alignment gi|XP_003123211.1| PREDICTED: ras-related protein Rab-11B-like ... 131 6e-31
>ref|XP_003358593.1| PREDICTED: ras-related protein Rab-7a-like [Sus scrofa].
Length = 207
Score = 421 bits (1081), Expect = e-118
Identities = 207/207 (100%), Positives = 207/207 (100%)
Frame = +1
Query: 229 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 408
MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 409 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 588
IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 589 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 768
VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 769 ELYNEFPEPIKLDKNDRAKPPAETCSC 849
ELYNEFPEPIKLDKNDRAKPPAETCSC
Sbjct: 181 ELYNEFPEPIKLDKNDRAKPPAETCSC 207
>ref|XP_003135320.1| PREDICTED: ras-related protein Rab-9B-like [Sus scrofa].
Length = 201
Score = 211 bits (536), Expect = 8e-55
Identities = 101/179 (56%), Positives = 128/179 (71%)
Frame = +1
Query: 235 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 414
S K +LLKVI+LGD GVGK+SLMN+YV KF +Q TIG +FL +++ VD R VT+QIW
Sbjct: 2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 415 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 594
DTAGQERF+SL FYRGADCC+L F V +F+ L +W+ EF+ A +DPE+FPFVV
Sbjct: 62 DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV 121
Query: 595 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 771
LGNK+D E+RQV T+ AQAWC + PY ETSAK+ NV AF+ R L E ++E
Sbjct: 122 LGNKVDKEDRQVTTEEAQAWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLE 180
>ref|XP_003134983.1| PREDICTED: ras-related protein Rab-9A-like isoform 1 [Sus scrofa].
Length = 201
Score = 207 bits (526), Expect = 1e-53
Identities = 102/203 (50%), Positives = 130/203 (64%)
Frame = +1
Query: 241 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 420
K L KVI+LGD GVGK+SLMN+YV KF Q TIG +FL K++ VD VTMQIWDT
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 421 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 600
AGQERF+SL FYRG+DCC+L F V +F+ L +W+ EF+ A ++PE+FPFV+LG
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 601 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYN 780
NKID+ RQV+ + AQAWC + PYFETSAK+A NV AF+ R L E +
Sbjct: 124 NKIDISERQVSAEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRAD--- 180
Query: 781 EFPEPIKLDKNDRAKPPAETCSC 849
I+ D + P + SC
Sbjct: 181 ---HLIQTDTVSLHRKPKPSSSC 200
>ref|XP_003360277.1| PREDICTED: ras-related protein Rab-9A-like isoform 3 [Sus scrofa].
Length = 201
Score = 207 bits (526), Expect = 1e-53
Identities = 102/203 (50%), Positives = 130/203 (64%)
Frame = +1
Query: 241 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 420
K L KVI+LGD GVGK+SLMN+YV KF Q TIG +FL K++ VD VTMQIWDT
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 421 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 600
AGQERF+SL FYRG+DCC+L F V +F+ L +W+ EF+ A ++PE+FPFV+LG
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 601 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYN 780
NKID+ RQV+ + AQAWC + PYFETSAK+A NV AF+ R L E +
Sbjct: 124 NKIDISERQVSAEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRAD--- 180
Query: 781 EFPEPIKLDKNDRAKPPAETCSC 849
I+ D + P + SC
Sbjct: 181 ---HLIQTDTVSLHRKPKPSSSC 200
>ref|XP_003360276.1| PREDICTED: ras-related protein Rab-9A-like isoform 2 [Sus scrofa].
Length = 201
Score = 207 bits (526), Expect = 1e-53
Identities = 102/203 (50%), Positives = 130/203 (64%)
Frame = +1
Query: 241 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 420
K L KVI+LGD GVGK+SLMN+YV KF Q TIG +FL K++ VD VTMQIWDT
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 421 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 600
AGQERF+SL FYRG+DCC+L F V +F+ L +W+ EF+ A ++PE+FPFV+LG
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 601 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYN 780
NKID+ RQV+ + AQAWC + PYFETSAK+A NV AF+ R L E +
Sbjct: 124 NKIDISERQVSAEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRAD--- 180
Query: 781 EFPEPIKLDKNDRAKPPAETCSC 849
I+ D + P + SC
Sbjct: 181 ---HLIQTDTVSLHRKPKPSSSC 200
>ref|XP_003357460.1| PREDICTED: ras-related protein Rab-7b-like [Sus scrofa].
Length = 200
Score = 191 bits (486), Expect = 5e-49
Identities = 99/199 (49%), Positives = 138/199 (69%)
Frame = +1
Query: 229 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 408
M RKKV LK+II+G GVGKTSL++QYV+K F Y+ T+GA L+K +++DD + +Q
Sbjct: 1 MNPRKKVDLKLIIIGALGVGKTSLLHQYVHKTFYEDYQTTLGASILSKIIILDDTTLKLQ 60
Query: 409 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 588
IWDT GQERF+S+ FY+G+D C+L FDVT +F+ L++WR + L + P + +++P
Sbjct: 61 IWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALETWRGDVLAKTIPME-QSYPM 119
Query: 589 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 768
VVLGNKIDL +RQV + AQ WC K +IPYFE SAK INV QAF+ +A AL + +
Sbjct: 120 VVLGNKIDLADRQVPQEVAQGWCKEK-DIPYFEVSAKNDINVVQAFEMLAGRALSRYRSI 178
Query: 769 ELYNEFPEPIKLDKNDRAK 825
L + F + IKL D++K
Sbjct: 179 -LESYFTDSIKLSPEDQSK 196
>ref|XP_003131451.1| PREDICTED: ras-related protein Rab-5C-like [Sus scrofa].
Length = 216
Score = 133 bits (335), Expect = 2e-31
Identities = 73/171 (42%), Positives = 105/171 (61%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 435
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +DD V +IWDTAGQER
Sbjct: 23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 82
Query: 436 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 615
+ SL +YRGA ++V+D+T +TF +W E QASP N + GNK DL
Sbjct: 83 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKADL 138
Query: 616 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 765
R V + AQA+ N++ + ETSAK A+NV + F IA+ K E +
Sbjct: 139 ASKRAVEFQEAQAYA-EDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQ 188
>ref|XP_003360910.1| PREDICTED: ras-related protein Rab-5B-like [Sus scrofa].
Length = 215
Score = 132 bits (331), Expect = 5e-31
Identities = 73/171 (42%), Positives = 103/171 (60%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 435
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +DD V +IWDTAGQER
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 81
Query: 436 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 615
+ SL +YRGA ++V+D+T TF +W E QASP + + GNK DL
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASP----SIVIALAGNKADL 137
Query: 616 EN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 765
N R V + AQA+ N + + ETSAK A+NV F IA+ K E +
Sbjct: 138 ANKRMVEYEEAQAYA-DDNTLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 187
>ref|XP_001927266.2| PREDICTED: ras-related protein Rab-13 [Sus scrofa].
Length = 203
Score = 131 bits (330), Expect = 6e-31
Identities = 71/199 (35%), Positives = 115/199 (57%)
Frame = +1
Query: 250 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 429
L K++++GDSGVGKT L+ ++ F+N Y +TIG DF + V ++ + + +Q+WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQ 67
Query: 430 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 609
ERF+++ A+YRGA +LV+D+T +F+ + +W AS ++LGNK
Sbjct: 68 ERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS----AGVERLLLGNKC 123
Query: 610 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFP 789
D+E ++ K ++ I +FETSAK ++NV++AF ++AR+ L + L N
Sbjct: 124 DMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNS-N 182
Query: 790 EPIKLDKNDRAKPPAETCS 846
+P D K CS
Sbjct: 183 KPHSTDLKTCDKKNTNKCS 201
>ref|XP_003123211.1| PREDICTED: ras-related protein Rab-11B-like [Sus scrofa].
Length = 218
Score = 131 bits (330), Expect = 6e-31
Identities = 66/163 (40%), Positives = 108/163 (66%), Gaps = 1/163 (0%)
Frame = +1
Query: 250 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 429
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ + VD + + QIWDTAGQ
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
Query: 430 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 609
ER++++ A+YRGA +LV+D+ T++ ++ W E A N +++GNK
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKS 126
Query: 610 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 735
DL + R V T A+A+ KNN+ + ETSA ++ NVE+AF+ I
Sbjct: 127 DLRHLRAVPTDEARAFA-EKNNLSFIETSALDSTNVEEAFKNI 168
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,510,448
Number of extensions: 860814
Number of successful extensions: 4333
Number of sequences better than 1.0e-05: 118
Number of HSP's gapped: 4126
Number of HSP's successfully gapped: 119
Length of query: 386
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 285
Effective length of database: 8,829,335
Effective search space: 2516360475
Effective search space used: 2516360475
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012583
(1158 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033031.2| ras-related protein Rab-7a [Mus musculus]. 413 e-115
Alignment gi|NP_795945.1| ras-related protein Rab-9B [Mus musculus]. 211 7e-55
Alignment gi|NP_062747.1| ras-related protein Rab-9A [Mus musculus]. 206 3e-53
Alignment gi|NP_663484.1| ras-related protein Rab-7b [Mus musculus]. 188 8e-48
Alignment gi|NP_077776.2| ras-related protein Rab-5C [Mus musculus]. 133 2e-31
Alignment gi|NP_803130.1| ras-related protein Rab-5B isoform 1 [Mus muscu... 132 5e-31
Alignment gi|XP_485050.4| PREDICTED: ras-related protein Rab-5B [Mus musc... 132 5e-31
Alignment gi|XP_003086306.1| PREDICTED: ras-related protein Rab-5B [Mus m... 132 5e-31
Alignment gi|NP_059078.2| ras-related protein Rab-11A [Mus musculus]. 131 9e-31
Alignment gi|NP_033023.1| ras-related protein Rab-11B [Mus musculus]. 131 9e-31
>ref|NP_033031.2| ras-related protein Rab-7a [Mus musculus].
Length = 207
Score = 413 bits (1061), Expect = e-115
Identities = 204/207 (98%), Positives = 205/207 (99%)
Frame = +1
Query: 229 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 408
MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 409 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 588
IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 589 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 768
VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 769 ELYNEFPEPIKLDKNDRAKPPAETCSC 849
ELYNEFPEPIKLDKNDRAK AE+CSC
Sbjct: 181 ELYNEFPEPIKLDKNDRAKASAESCSC 207
>ref|NP_795945.1| ras-related protein Rab-9B [Mus musculus].
Length = 201
Score = 211 bits (538), Expect = 7e-55
Identities = 101/179 (56%), Positives = 128/179 (71%)
Frame = +1
Query: 235 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 414
S K +LLKVI+LGD GVGK+SLMN+YV KF +Q TIG +FL +++ VD R VT+QIW
Sbjct: 2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 415 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 594
DTAGQERF+SL FYRGADCC+L F V +F+ L +W+ EF+ A +DP++FPFVV
Sbjct: 62 DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPDHFPFVV 121
Query: 595 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 771
LGNK+D E+RQV T+ AQAWC N PY ETSAK+ NV AF+ R L E ++E
Sbjct: 122 LGNKVDKEDRQVTTEEAQAWCMENGNYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLE 180
>ref|NP_062747.1| ras-related protein Rab-9A [Mus musculus].
Length = 201
Score = 206 bits (524), Expect = 3e-53
Identities = 101/203 (49%), Positives = 132/203 (65%)
Frame = +1
Query: 241 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 420
K L K+I+LGD GVGK+SLMN+YV KF +Q TIG +FL K++ VD VTMQIWDT
Sbjct: 4 KSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 421 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 600
AGQERF+SL FYRG+DCC+L F V +F+ L +W+ EF+ A ++PE+FPFV+LG
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 601 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYN 780
NK D++ RQV+T+ AQAWC + PYFETSAK++ NV AF+ R L E E
Sbjct: 124 NKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILATEDRSE--- 180
Query: 781 EFPEPIKLDKNDRAKPPAETCSC 849
I+ D + + P SC
Sbjct: 181 ---HLIQTDTVNLHRKPKPNSSC 200
>ref|NP_663484.1| ras-related protein Rab-7b [Mus musculus].
Length = 199
Score = 188 bits (477), Expect = 8e-48
Identities = 92/174 (52%), Positives = 127/174 (72%)
Frame = +1
Query: 229 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 408
M RKKV LK+II+G GVGKTSL++QYV+K F +Y+ T+GA L+K +++DD + +Q
Sbjct: 1 MNPRKKVDLKLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQ 60
Query: 409 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 588
IWDT GQERF+S+ FY+G+D C+L FDVT P +F+ LD WRD+ L + P + +++P
Sbjct: 61 IWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPME-QSYPM 119
Query: 589 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 750
VVLGNKIDLE+R+V+ + WC K ++PYFE SAK INV QAF+ +A AL
Sbjct: 120 VVLGNKIDLEDRKVSQEVVHGWCKEK-DMPYFEVSAKNDINVVQAFEVLASRAL 172
>ref|NP_077776.2| ras-related protein Rab-5C [Mus musculus].
Length = 216
Score = 133 bits (335), Expect = 2e-31
Identities = 73/171 (42%), Positives = 105/171 (61%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 435
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +DD V +IWDTAGQER
Sbjct: 23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 82
Query: 436 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 615
+ SL +YRGA ++V+D+T +TF +W E QASP N + GNK DL
Sbjct: 83 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKADL 138
Query: 616 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 765
R V + AQA+ N++ + ETSAK A+NV + F IA+ K E +
Sbjct: 139 ASKRAVEFQEAQAYA-DDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQ 188
>ref|NP_803130.1| ras-related protein Rab-5B isoform 1 [Mus musculus].
Length = 215
Score = 132 bits (332), Expect = 5e-31
Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 435
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +DD V +IWDTAGQER
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 81
Query: 436 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 615
+ SL +YRGA ++V+D+T TF +W E QASP + + GNK DL
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASP----SIVIALAGNKADL 137
Query: 616 EN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 765
N R V + AQA+ N++ + ETSAK A+NV F IA+ K E +
Sbjct: 138 ANKRMVEYEEAQAYA-DDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 187
>ref|XP_485050.4| PREDICTED: ras-related protein Rab-5B [Mus musculus].
Length = 280
Score = 132 bits (332), Expect = 5e-31
Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 435
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +DD V +IWDTAGQER
Sbjct: 87 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 146
Query: 436 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 615
+ SL +YRGA ++V+D+T TF +W E QASP + + GNK DL
Sbjct: 147 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASP----SIVIALAGNKADL 202
Query: 616 EN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 765
N R V + AQA+ N++ + ETSAK A+NV F IA+ K E +
Sbjct: 203 ANKRMVEYEEAQAYA-DDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 252
>ref|XP_003086306.1| PREDICTED: ras-related protein Rab-5B [Mus musculus].
Length = 280
Score = 132 bits (332), Expect = 5e-31
Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 435
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +DD V +IWDTAGQER
Sbjct: 87 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 146
Query: 436 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 615
+ SL +YRGA ++V+D+T TF +W E QASP + + GNK DL
Sbjct: 147 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASP----SIVIALAGNKADL 202
Query: 616 EN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 765
N R V + AQA+ N++ + ETSAK A+NV F IA+ K E +
Sbjct: 203 ANKRMVEYEEAQAYA-DDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 252
>ref|NP_059078.2| ras-related protein Rab-11A [Mus musculus].
Length = 216
Score = 131 bits (330), Expect = 9e-31
Identities = 67/163 (41%), Positives = 107/163 (65%), Gaps = 1/163 (0%)
Frame = +1
Query: 250 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 429
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ + VD + + QIWDTAGQ
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
Query: 430 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 609
ER++++ A+YRGA +LV+D+ T++ ++ W E A N +++GNK
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKS 126
Query: 610 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 735
DL + R V T A+A+ KN + + ETSA ++ NVE AFQTI
Sbjct: 127 DLRHLRAVPTDEARAFA-EKNGLSFIETSALDSTNVEAAFQTI 168
>ref|NP_033023.1| ras-related protein Rab-11B [Mus musculus].
Length = 218
Score = 131 bits (330), Expect = 9e-31
Identities = 66/163 (40%), Positives = 108/163 (66%), Gaps = 1/163 (0%)
Frame = +1
Query: 250 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 429
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ + VD + + QIWDTAGQ
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
Query: 430 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 609
ER++++ A+YRGA +LV+D+ T++ ++ W E A N +++GNK
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKS 126
Query: 610 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 735
DL + R V T A+A+ KNN+ + ETSA ++ NVE+AF+ I
Sbjct: 127 DLRHLRAVPTDEARAFA-EKNNLSFIETSALDSTNVEEAFKNI 168
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,611,768
Number of extensions: 1044656
Number of successful extensions: 5262
Number of sequences better than 1.0e-05: 143
Number of HSP's gapped: 4999
Number of HSP's successfully gapped: 143
Length of query: 386
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 283
Effective length of database: 12,523,851
Effective search space: 3544249833
Effective search space used: 3544249833
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012583
(1158 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004628.4| ras-related protein Rab-7a [Homo sapiens]. 413 e-115
Alignment gi|NP_057454.1| ras-related protein Rab-9B [Homo sapiens]. 209 4e-54
Alignment gi|NP_001182257.1| ras-related protein Rab-9A [Homo sapiens]. 208 7e-54
Alignment gi|NP_004242.1| ras-related protein Rab-9A [Homo sapiens]. 208 7e-54
Alignment gi|NP_001157994.1| ras-related protein Rab-7b [Homo sapiens]. 184 2e-46
Alignment gi|NP_796377.3| ras-related protein Rab-7b [Homo sapiens]. 184 2e-46
Alignment gi|NP_958842.1| ras-related protein Rab-5C isoform a [Homo sapi... 133 3e-31
Alignment gi|NP_004574.2| ras-related protein Rab-5C isoform b [Homo sapi... 133 3e-31
Alignment gi|NP_002859.1| ras-related protein Rab-5B [Homo sapiens]. 132 6e-31
Alignment gi|NP_004654.1| ras-related protein Rab-11A isoform 1 [Homo sap... 131 1e-30
>ref|NP_004628.4| ras-related protein Rab-7a [Homo sapiens].
Length = 207
Score = 413 bits (1061), Expect = e-115
Identities = 204/207 (98%), Positives = 205/207 (99%)
Frame = +1
Query: 229 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 408
MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 409 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 588
IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 589 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 768
VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 769 ELYNEFPEPIKLDKNDRAKPPAETCSC 849
ELYNEFPEPIKLDKNDRAK AE+CSC
Sbjct: 181 ELYNEFPEPIKLDKNDRAKASAESCSC 207
>ref|NP_057454.1| ras-related protein Rab-9B [Homo sapiens].
Length = 201
Score = 209 bits (532), Expect = 4e-54
Identities = 100/179 (55%), Positives = 127/179 (70%)
Frame = +1
Query: 235 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 414
S K +LLKVI+LGD GVGK+SLMN+YV KF +Q TIG +FL +++ VD R VT+QIW
Sbjct: 2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 415 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 594
DTAGQERF+SL FYRGADCC+L F V +F+ L +W+ EF+ A +DPE+FPFVV
Sbjct: 62 DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV 121
Query: 595 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 771
LGNK+D E+RQV T+ AQ WC + PY ETSAK+ NV AF+ R L E ++E
Sbjct: 122 LGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLE 180
>ref|NP_001182257.1| ras-related protein Rab-9A [Homo sapiens].
Length = 201
Score = 208 bits (530), Expect = 7e-54
Identities = 103/203 (50%), Positives = 132/203 (65%)
Frame = +1
Query: 241 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 420
K L KVI+LGD GVGK+SLMN+YV KF Q TIG +FL K++ VD VTMQIWDT
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 421 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 600
AGQERF+SL FYRG+DCC+L F V +F+ L +W+ EF+ A ++PE+FPFV+LG
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 601 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYN 780
NKID+ RQV+T+ AQAWC + PYFETSAK+A NV AF+ R L E +
Sbjct: 124 NKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSD--- 180
Query: 781 EFPEPIKLDKNDRAKPPAETCSC 849
I+ D + + P + SC
Sbjct: 181 ---HLIQTDTVNLHRKPKPSSSC 200
>ref|NP_004242.1| ras-related protein Rab-9A [Homo sapiens].
Length = 201
Score = 208 bits (530), Expect = 7e-54
Identities = 103/203 (50%), Positives = 132/203 (65%)
Frame = +1
Query: 241 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 420
K L KVI+LGD GVGK+SLMN+YV KF Q TIG +FL K++ VD VTMQIWDT
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 421 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 600
AGQERF+SL FYRG+DCC+L F V +F+ L +W+ EF+ A ++PE+FPFV+LG
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 601 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYN 780
NKID+ RQV+T+ AQAWC + PYFETSAK+A NV AF+ R L E +
Sbjct: 124 NKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSD--- 180
Query: 781 EFPEPIKLDKNDRAKPPAETCSC 849
I+ D + + P + SC
Sbjct: 181 ---HLIQTDTVNLHRKPKPSSSC 200
>ref|NP_001157994.1| ras-related protein Rab-7b [Homo sapiens].
Length = 199
Score = 184 bits (466), Expect = 2e-46
Identities = 96/192 (50%), Positives = 132/192 (68%)
Frame = +1
Query: 229 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 408
M RKKV LK+II+G GVGKTSL++QYV+K F +Y+ T+GA L+K +++ D + +Q
Sbjct: 1 MNPRKKVDLKLIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQ 60
Query: 409 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 588
IWDT GQERF+S+ FY+G+D C+L FDVT +F+ LD WR + L + P + +++P
Sbjct: 61 IWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPME-QSYPM 119
Query: 589 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 768
V+LGNKIDL +R+V + AQ WC K +IPYFE SAK INV QAF+ +A AL + +
Sbjct: 120 VLLGNKIDLADRKVPQEVAQGWCREK-DIPYFEVSAKNDINVVQAFEMLASRALSRYQSI 178
Query: 769 ELYNEFPEPIKL 804
L N E IKL
Sbjct: 179 -LENHLTESIKL 189
>ref|NP_796377.3| ras-related protein Rab-7b [Homo sapiens].
Length = 199
Score = 184 bits (466), Expect = 2e-46
Identities = 96/192 (50%), Positives = 132/192 (68%)
Frame = +1
Query: 229 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 408
M RKKV LK+II+G GVGKTSL++QYV+K F +Y+ T+GA L+K +++ D + +Q
Sbjct: 1 MNPRKKVDLKLIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQ 60
Query: 409 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 588
IWDT GQERF+S+ FY+G+D C+L FDVT +F+ LD WR + L + P + +++P
Sbjct: 61 IWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPME-QSYPM 119
Query: 589 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 768
V+LGNKIDL +R+V + AQ WC K +IPYFE SAK INV QAF+ +A AL + +
Sbjct: 120 VLLGNKIDLADRKVPQEVAQGWCREK-DIPYFEVSAKNDINVVQAFEMLASRALSRYQSI 178
Query: 769 ELYNEFPEPIKL 804
L N E IKL
Sbjct: 179 -LENHLTESIKL 189
>ref|NP_958842.1| ras-related protein Rab-5C isoform a [Homo sapiens].
Length = 216
Score = 133 bits (335), Expect = 3e-31
Identities = 73/171 (42%), Positives = 105/171 (61%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 435
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +DD V +IWDTAGQER
Sbjct: 23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 82
Query: 436 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 615
+ SL +YRGA ++V+D+T +TF +W E QASP N + GNK DL
Sbjct: 83 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKADL 138
Query: 616 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 765
R V + AQA+ N++ + ETSAK A+NV + F IA+ K E +
Sbjct: 139 ASKRAVEFQEAQAYA-DDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQ 188
>ref|NP_004574.2| ras-related protein Rab-5C isoform b [Homo sapiens].
Length = 216
Score = 133 bits (335), Expect = 3e-31
Identities = 73/171 (42%), Positives = 105/171 (61%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 435
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +DD V +IWDTAGQER
Sbjct: 23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 82
Query: 436 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 615
+ SL +YRGA ++V+D+T +TF +W E QASP N + GNK DL
Sbjct: 83 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKADL 138
Query: 616 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 765
R V + AQA+ N++ + ETSAK A+NV + F IA+ K E +
Sbjct: 139 ASKRAVEFQEAQAYA-DDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQ 188
>ref|NP_002859.1| ras-related protein Rab-5B [Homo sapiens].
Length = 215
Score = 132 bits (332), Expect = 6e-31
Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 435
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +DD V +IWDTAGQER
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 81
Query: 436 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 615
+ SL +YRGA ++V+D+T TF +W E QASP + + GNK DL
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASP----SIVIALAGNKADL 137
Query: 616 EN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 765
N R V + AQA+ N++ + ETSAK A+NV F IA+ K E +
Sbjct: 138 ANKRMVEYEEAQAYA-DDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 187
>ref|NP_004654.1| ras-related protein Rab-11A isoform 1 [Homo sapiens].
Length = 216
Score = 131 bits (330), Expect = 1e-30
Identities = 67/163 (41%), Positives = 107/163 (65%), Gaps = 1/163 (0%)
Frame = +1
Query: 250 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 429
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ + VD + + QIWDTAGQ
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
Query: 430 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 609
ER++++ A+YRGA +LV+D+ T++ ++ W E A N +++GNK
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKS 126
Query: 610 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 735
DL + R V T A+A+ KN + + ETSA ++ NVE AFQTI
Sbjct: 127 DLRHLRAVPTDEARAFA-EKNGLSFIETSALDSTNVEAAFQTI 168
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,617,802
Number of extensions: 1255924
Number of successful extensions: 6607
Number of sequences better than 1.0e-05: 193
Number of HSP's gapped: 6300
Number of HSP's successfully gapped: 193
Length of query: 386
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,868,908
Effective search space: 4193032056
Effective search space used: 4193032056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012583
(1158 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 468 e-129
>Sscrofa_Chr13
|| Length = 218635234
Score = 468 bits (236), Expect = e-129
Identities = 236/236 (100%)
Strand = Plus / Minus
Query: 754 caggagacggaggtggagctctacaatgaattccctgaacccatcaaactggacaagaac 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79451547 caggagacggaggtggagctctacaatgaattccctgaacccatcaaactggacaagaac 79451488
Query: 814 gaccgggccaagcccccggcggaaacctgcagttgctgaagcgacagtgagcagagcaca 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79451487 gaccgggccaagcccccggcggaaacctgcagttgctgaagcgacagtgagcagagcaca 79451428
Query: 874 gagtccttcacgatccaagaacacacttaggccttccaccacacgccctccttccccaga 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79451427 gagtccttcacgatccaagaacacacttaggccttccaccacacgccctccttccccaga 79451368
Query: 934 gtcatctctcctttccagctgccaagagaaaccccaccctactacaccctcaccct 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79451367 gtcatctctcctttccagctgccaagagaaaccccaccctactacaccctcaccct 79451312
Score = 446 bits (225), Expect = e-122
Identities = 225/225 (100%)
Strand = Plus / Minus
Query: 406 cagatctgggacacagccggacaggaacggttccagtctcttggcgtggccttctacaga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79456604 cagatctgggacacagccggacaggaacggttccagtctcttggcgtggccttctacaga 79456545
Query: 466 ggcgcagactgctgcgttctggtgtttgatgtgactgcccccaacacattcaaaaccctg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79456544 ggcgcagactgctgcgttctggtgtttgatgtgactgcccccaacacattcaaaaccctg 79456485
Query: 526 gatagctggagagatgagtttctcatccaggccagtccccgggatcccgaaaacttcccc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79456484 gatagctggagagatgagtttctcatccaggccagtccccgggatcccgaaaacttcccc 79456425
Query: 586 tttgttgtgttgggaaacaagatcgacctcgaaaacagacaggtg 630
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79456424 tttgttgtgttgggaaacaagatcgacctcgaaaacagacaggtg 79456380
Score = 436 bits (220), Expect = e-119
Identities = 220/220 (100%)
Strand = Plus / Minus
Query: 1 cttccgcttggggcggcggcggtggcggaagtgggagcggagcccgagtcttggccataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79367859 cttccgcttggggcggcggcggtggcggaagtgggagcggagcccgagtcttggccataa 79367800
Query: 61 agcccgaggcggcggcggtggcggcgctggaagcttggacaggctgaggatcccgctgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79367799 agcccgaggcggcggcggtggcggcgctggaagcttggacaggctgaggatcccgctgca 79367740
Query: 121 atcggaacttggactttcttccgccctcgtcttccctccgtctcctccccggcagacccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79367739 atcggaacttggactttcttccgccctcgtcttccctccgtctcctccccggcagacccc 79367680
Query: 181 taccgacacgcctggcccggagcccagcggagcggccgcg 220
||||||||||||||||||||||||||||||||||||||||
Sbjct: 79367679 taccgacacgcctggcccggagcccagcggagcggccgcg 79367640
Score = 262 bits (132), Expect = 4e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 626 aggtggccacgaagcgggcgcaggcctggtgctacagcaaaaacaacattccctactttg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79455119 aggtggccacgaagcgggcgcaggcctggtgctacagcaaaaacaacattccctactttg 79455060
Query: 686 agaccagcgccaaggaggccatcaatgtggagcaagccttccagacgatcgctcggaacg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79455059 agaccagcgccaaggaggccatcaatgtggagcaagccttccagacgatcgctcggaacg 79455000
Query: 746 cgctgaagcagg 757
||||||||||||
Sbjct: 79454999 cgctgaagcagg 79454988
Score = 254 bits (128), Expect = 9e-65
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 281 gagttggtaagacttcactcatgaaccagtatgtgaacaagaagttcagtaatcagtaca 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79310883 gagttggtaagacttcactcatgaaccagtatgtgaacaagaagttcagtaatcagtaca 79310824
Query: 341 aagcgacaataggagcagacttcctgacgaaggaggtgatggtggatgacagactagtca 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79310823 aagcgacaataggagcagacttcctgacgaaggaggtgatggtggatgacagactagtca 79310764
Query: 401 caatgcag 408
||||||||
Sbjct: 79310763 caatgcag 79310756
Score = 204 bits (103), Expect = 8e-50
Identities = 129/135 (95%), Gaps = 2/135 (1%)
Strand = Plus / Minus
Query: 1026 ctgacacagactccacggcacaggcccgaggcggctccatcagcgtcccc-cagcagccc 1084
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 79451269 ctgacacagactccacggcacaggcccgaggcggctccatcagcgtccccacagcagccc 79451210
Query: 1085 tcttgtggcaccaggatgggccagctgta-aaaccccctcggtgtggagtcggcatcaga 1143
|||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 79451209 tcttgtggcagcaggatgggccagctgtagaaacccctccggtgtggagtcggcatcaga 79451150
Query: 1144 agcttcccttttgtc 1158
||||||| |||||||
Sbjct: 79451149 agcttcctttttgtc 79451135
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 220 gtttgaaggatgacctctaggaagaaagtgttgctgaaggttatcatcctgggagattct 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79313601 gtttgaaggatgacctctaggaagaaagtgttgctgaaggttatcatcctgggagattct 79313542
Query: 280 gg 281
||
Sbjct: 79313541 gg 79313540
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,256,121
Number of extensions: 374
Number of successful extensions: 374
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 7
Length of query: 1158
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1137
Effective length of database: 2,808,413,156
Effective search space: 3193165758372
Effective search space used: 3193165758372
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)