BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012586
(1977 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854960.1| PREDICTED: similar to Stress-induced-phosphopro... 1017 0.0
Alignment gi|XP_848804.1| PREDICTED: similar to Stress-induced-phosphopro... 702 0.0
Alignment gi|XP_854657.1| PREDICTED: similar to Stress-induced-phosphopro... 415 e-116
Alignment gi|XP_853876.1| PREDICTED: similar to Stress-induced-phosphopro... 298 1e-80
Alignment gi|XP_848822.1| PREDICTED: similar to stress-induced-phosphopro... 195 1e-49
Alignment gi|XP_854647.1| PREDICTED: similar to stress-induced-phosphopro... 167 4e-41
Alignment gi|XP_534826.2| PREDICTED: similar to CG13570-PA isoform 1 [Can... 107 4e-23
Alignment gi|XP_851525.1| PREDICTED: similar to CG13570-PA isoform 3 [Can... 107 4e-23
Alignment gi|XP_535258.1| PREDICTED: similar to small glutamine-rich tetr... 89 1e-17
Alignment gi|XP_543463.2| PREDICTED: similar to TPR repeat containing pro... 87 6e-17
>ref|XP_854960.1| PREDICTED: similar to Stress-induced-phosphoprotein 1 (STI1)
(Hsc70/Hsp90-organizing protein) (Hop)
(Transformation-sensitive protein IEF SSP 3521) [Canis
familiaris].
Length = 543
Score = 1017 bits (2630), Expect = 0.0
Identities = 507/543 (93%), Positives = 511/543 (94%)
Frame = +1
Query: 88 MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED 267
MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED
Sbjct: 1 MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED 60
Query: 268 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA 447
GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA
Sbjct: 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA 120
Query: 448 ERKFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLS 627
ERKFMNPFNMPNLYQKLESDPRT+ LLADP+YRELIEQLRNKPSDLGTKLQDPRIMTTLS
Sbjct: 121 ERKFMNPFNMPNLYQKLESDPRTRTLLADPTYRELIEQLRNKPSDLGTKLQDPRIMTTLS 180
Query: 628 VLLGVDLGSMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKKQALKEKELGNEAYKKKD 807
VLLGVDLGSMD NKKQALKEKELGNEAYKKKD
Sbjct: 181 VLLGVDLGSMDEEEEVGTPPPPPPPKKDTKPEPMEEDLPENKKQALKEKELGNEAYKKKD 240
Query: 808 FDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIA 987
FDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDY KCRELCEKAIEVGRENREDYRQIA
Sbjct: 241 FDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYSKCRELCEKAIEVGRENREDYRQIA 300
Query: 988 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA 1167
KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA
Sbjct: 301 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA 360
Query: 1168 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 1347
LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC
Sbjct: 361 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 420
Query: 1348 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQRCVMAQYNRHD 1527
IQLEP FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD+NCKEAADGYQRC+MAQYNRHD
Sbjct: 421 IQLEPAFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSNCKEAADGYQRCMMAQYNRHD 480
Query: 1528 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI 1707
SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI
Sbjct: 481 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI 540
Query: 1708 AIR 1716
AIR
Sbjct: 541 AIR 543
>ref|XP_848804.1| PREDICTED: similar to Stress-induced-phosphoprotein 1 (STI1)
(Hsc70/Hsp90-organizing protein) (Hop)
(Transformation-sensitive protein IEF SSP 3521) [Canis
familiaris].
Length = 401
Score = 702 bits (1813), Expect = 0.0
Identities = 356/414 (85%), Positives = 363/414 (87%)
Frame = +1
Query: 91 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDG 270
EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDG
Sbjct: 17 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDG 76
Query: 271 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAE 450
CKTVDLKPDWG+GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAE
Sbjct: 77 CKTVDLKPDWGRGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAE 136
Query: 451 RKFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLSV 630
RKFMNPFNMPNLYQKLESDPRT+ LLADP+YRELIEQLRNKPSDLGTKL+D T
Sbjct: 137 RKFMNPFNMPNLYQKLESDPRTRTLLADPTYRELIEQLRNKPSDLGTKLKD-----TKPE 191
Query: 631 LLGVDLGSMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKKQALKEKELGNEAYKKKDF 810
+ DL NKKQALKEKELGNEAYKKKDF
Sbjct: 192 AMEEDLPE-------------------------------NKKQALKEKELGNEAYKKKDF 220
Query: 811 DTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIAK 990
DTALKHYDRAKDLDPTNMTY+TNQAAVYFEKGDY KCRELCEKAIEVGRENREDYRQIAK
Sbjct: 221 DTALKHYDRAKDLDPTNMTYLTNQAAVYFEKGDYSKCRELCEKAIEVGRENREDYRQIAK 280
Query: 991 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLAL 1170
AYARIGNSY KEEK K HFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLAL
Sbjct: 281 AYARIGNSYSKEEKCKATTHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLAL 340
Query: 1171 EEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 1332
EEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL+
Sbjct: 341 EEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALR 394
Score = 100 bits (248), Expect = 7e-21
Identities = 54/167 (32%), Positives = 97/167 (58%), Gaps = 4/167 (2%)
Frame = +1
Query: 1171 EEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI 1350
E K KGN+ G+ A++ Y+EAIK +P++ LYSNR+A Y K ++Q A +D + +
Sbjct: 21 ELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 80
Query: 1351 QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQ----RCVMAQYN 1518
L+P + +GY+RKAAALE + + +A Y++ L +AN + +G Q R ++
Sbjct: 81 DLKPDWGRGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFM 140
Query: 1519 RHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKN 1659
+ ++ ++ +DP + +++DP R ++EQ++ P L LK+
Sbjct: 141 NPFNMPNLYQKLESDPRTRTLLADPTYRELIEQLRNKPSDLGTKLKD 187
Score = 72.8 bits (177), Expect = 1e-12
Identities = 71/320 (22%), Positives = 127/320 (39%), Gaps = 50/320 (15%)
Frame = +1
Query: 754 KQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELC 933
+Q + KE GN+A + D AL+ Y A LDP N +N++A Y +KGDY K E
Sbjct: 17 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDG 76
Query: 934 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAI---------------------- 1047
K +++ + Y + A A + + Y++ +
Sbjct: 77 CKTVDLKPDWGRGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAE 136
Query: 1048 ----------HFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDL----------- 1164
+ Y K ++ RT +L E I + + + + + L
Sbjct: 137 RKFMNPFNMPNLYQKLESDPRTRTLLADPTYRELIEQLRNKPSDLGTKLKDTKPEAMEED 196
Query: 1165 -------ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQL 1323
AL+EK GNE ++K D+ A+KHY A +P + +N+AA Y + ++
Sbjct: 197 LPENKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYLTNQAAVYFEKGDYSK 256
Query: 1324 ALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQRCV 1503
+ CE+ I++ G + + K Y + + Y K + CK Y + +
Sbjct: 257 CRELCEKAIEV------GRENREDYRQIAKAYARIGNSYSK----EEKCKATTHFYNKSL 306
Query: 1504 MAQYNRHDSPEDVKRRAMAD 1563
H +P+ +K+ A+
Sbjct: 307 A----EHRTPDVLKKCQQAE 322
>ref|XP_854657.1| PREDICTED: similar to Stress-induced-phosphoprotein 1 (STI1)
(Hsc70/Hsp90-organizing protein) (Hop)
(Transformation-sensitive protein IEF SSP 3521) [Canis
familiaris].
Length = 276
Score = 415 bits (1067), Expect = e-116
Identities = 213/250 (85%), Positives = 223/250 (89%)
Frame = +1
Query: 748 NKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRE 927
+KKQ LKEKEL NEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDY KC +
Sbjct: 32 SKKQVLKEKELRNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYSKC-Q 90
Query: 928 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 1107
LCEKAIEVG+EN+E Y QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ
Sbjct: 91 LCEKAIEVGQENQEGYLQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 150
Query: 1108 QAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNR 1287
QAEKILKEQE+ AYINPDLALEEKNKGN+ F KGDYPQA+KHYTEAIK+NPK K NR
Sbjct: 151 QAEKILKEQEQPAYINPDLALEEKNKGNKYFPKGDYPQAVKHYTEAIKQNPKKNKT-KNR 209
Query: 1288 AACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDAN 1467
K+ LALKDCEECIQLE FIKGYTRKAAALEAMKDYTKAMDV QKALDLD+N
Sbjct: 210 ---IQKMPNCTLALKDCEECIQLELAFIKGYTRKAAALEAMKDYTKAMDVSQKALDLDSN 266
Query: 1468 CKEAADGYQR 1497
KEAADGYQR
Sbjct: 267 DKEAADGYQR 276
Score = 51.6 bits (122), Expect = 3e-06
Identities = 35/108 (32%), Positives = 59/108 (54%)
Frame = +1
Query: 103 ELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 282
E K KGNK G+ A++ Y+EAIK +P+ + NR K + A +D + +
Sbjct: 172 EEKNKGNKYFPKGDYPQAVKHYTEAIKQNPKKNKT-KNR---IQKMPNCTLALKDCEECI 227
Query: 283 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 426
L+ + KGY+RKAAALE + + +A ++ L ++N+ + +G Q
Sbjct: 228 QLELAFIKGYTRKAAALEAMKDYTKAMDVSQKALDLDSNDKEAADGYQ 275
Score = 50.8 bits (120), Expect = 5e-06
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Frame = +1
Query: 91 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDY------Q 252
+QV + KE N+A + D AL+ Y A LDP N +N++A Y +KGDY +
Sbjct: 34 KQVLKEKELRNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYSKCQLCE 93
Query: 253 KAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 432
KA E G + + K Y+R + ++++A Y + L E P + + Q
Sbjct: 94 KAIEVGQENQEGYLQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA-EHRTPDVLKKCQQA 152
Query: 433 EARLAERK---FMNP 468
E L E++ ++NP
Sbjct: 153 EKILKEQEQPAYINP 167
>ref|XP_853876.1| PREDICTED: similar to Stress-induced-phosphoprotein 1 (STI1)
(Hsc70/Hsp90-organizing protein) (Hop)
(Transformation
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012586
(1977 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030569.1| stress-induced-phosphoprotein 1 [Bos taurus]. 1017 0.0
Alignment gi|XP_002685701.1| PREDICTED: stress-induced-phosphoprotein 1 (... 1001 0.0
Alignment gi|XP_591464.1| PREDICTED: stress-induced-phosphoprotein 1 (Hsp... 1001 0.0
Alignment gi|XP_002687363.1| PREDICTED: RNA polymerase II associated prot... 108 2e-23
Alignment gi|XP_002704323.1| PREDICTED: RNA polymerase II associated prot... 108 2e-23
Alignment gi|XP_002696071.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C... 101 3e-21
Alignment gi|XP_002694666.1| PREDICTED: tetratricopeptide repeat domain 2... 87 5e-17
Alignment gi|NP_001179720.1| small glutamine-rich tetratricopeptide repea... 87 7e-17
Alignment gi|XP_002696339.1| PREDICTED: small glutamine-rich tetratricope... 87 7e-17
Alignment gi|NP_001033119.1| small glutamine-rich tetratricopeptide repea... 83 8e-16
>ref|NP_001030569.1| stress-induced-phosphoprotein 1 [Bos taurus].
Length = 543
Score = 1017 bits (2629), Expect = 0.0
Identities = 506/543 (93%), Positives = 513/543 (94%)
Frame = +1
Query: 88 MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED 267
MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED
Sbjct: 1 MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED 60
Query: 268 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA 447
GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAK+TYEEGLKHEANNPQLKEGLQNMEARLA
Sbjct: 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKQTYEEGLKHEANNPQLKEGLQNMEARLA 120
Query: 448 ERKFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLS 627
ERKFMNPFNMPNLYQKLESDPRTK LLADP+YRELIEQLRNKPSDLGTKLQDPRIMTTLS
Sbjct: 121 ERKFMNPFNMPNLYQKLESDPRTKTLLADPTYRELIEQLRNKPSDLGTKLQDPRIMTTLS 180
Query: 628 VLLGVDLGSMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKKQALKEKELGNEAYKKKD 807
VLLGVDLGSMD NKKQAL+EKELGNEAYKKKD
Sbjct: 181 VLLGVDLGSMDEEEEVATPPPPPPPKKETKPEPMEEDLPENKKQALREKELGNEAYKKKD 240
Query: 808 FDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIA 987
FDTALKHYD+AKDLDPTNMTY+TNQAAVYFEKGDYG+CRELCEKAIEVGRENREDYRQIA
Sbjct: 241 FDTALKHYDKAKDLDPTNMTYITNQAAVYFEKGDYGQCRELCEKAIEVGRENREDYRQIA 300
Query: 988 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA 1167
KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA
Sbjct: 301 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA 360
Query: 1168 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 1347
LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC
Sbjct: 361 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 420
Query: 1348 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQRCVMAQYNRHD 1527
IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD+NCKEAADGYQRCVMAQYNRHD
Sbjct: 421 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSNCKEAADGYQRCVMAQYNRHD 480
Query: 1528 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI 1707
SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI
Sbjct: 481 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI 540
Query: 1708 AIR 1716
AIR
Sbjct: 541 AIR 543
>ref|XP_002685701.1| PREDICTED: stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing
protein)-like [Bos taurus].
Length = 543
Score = 1001 bits (2589), Expect = 0.0
Identities = 497/543 (91%), Positives = 509/543 (93%)
Frame = +1
Query: 88 MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED 267
M+QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYS+RSAAYAKKGDYQKAYED
Sbjct: 1 MKQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSSRSAAYAKKGDYQKAYED 60
Query: 268 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA 447
GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAK+TYEEGLKHEANNPQLKEGLQNMEARLA
Sbjct: 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKQTYEEGLKHEANNPQLKEGLQNMEARLA 120
Query: 448 ERKFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLS 627
ERKFMNPFNMPNLYQKLESDPRTK LLADP+YRELIEQL+NKPSDLGTKLQDPRIMTTLS
Sbjct: 121 ERKFMNPFNMPNLYQKLESDPRTKTLLADPTYRELIEQLQNKPSDLGTKLQDPRIMTTLS 180
Query: 628 VLLGVDLGSMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKKQALKEKELGNEAYKKKD 807
VLLGVDLGSMD NKKQAL+EKELGNEAYKKKD
Sbjct: 181 VLLGVDLGSMDEEEEVATPPPPPPPKKETKPEPMEEDLPENKKQALREKELGNEAYKKKD 240
Query: 808 FDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIA 987
FDTALKHYD+AKDLDPTNMTY+TNQAAVYFEKGDYG+CRELCEKAIEVGRENREDYRQIA
Sbjct: 241 FDTALKHYDKAKDLDPTNMTYITNQAAVYFEKGDYGQCRELCEKAIEVGRENREDYRQIA 300
Query: 988 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA 1167
KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA
Sbjct: 301 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA 360
Query: 1168 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 1347
LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNR ACYTKLLEFQL LKDCEEC
Sbjct: 361 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRGACYTKLLEFQLVLKDCEEC 420
Query: 1348 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQRCVMAQYNRHD 1527
IQLEPTFIKGYT KAAALEAMKDYTKAMDVYQKA+DLD+NCKEAADGYQ C+MAQYNRHD
Sbjct: 421 IQLEPTFIKGYTWKAAALEAMKDYTKAMDVYQKAVDLDSNCKEAADGYQHCMMAQYNRHD 480
Query: 1528 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI 1707
SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI
Sbjct: 481 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI 540
Query: 1708 AIR 1716
AIR
Sbjct: 541 AIR 543
>ref|XP_591464.1| PREDICTED: stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing
protein) [Bos taurus].
Length = 543
Score = 1001 bits (2589), Expect = 0.0
Identities = 497/543 (91%), Positives = 509/543 (93%)
Frame = +1
Query: 88 MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED 267
M+QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYS+RSAAYAKKGDYQKAYED
Sbjct: 1 MKQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSSRSAAYAKKGDYQKAYED 60
Query: 268 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA 447
GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAK+TYEEGLKHEANNPQLKEGLQNMEARLA
Sbjct: 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKQTYEEGLKHEANNPQLKEGLQNMEARLA 120
Query: 448 ERKFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLS 627
ERKFMNPFNMPNLYQKLESDPRTK LLADP+YRELIEQL+NKPSDLGTKLQDPRIMTTLS
Sbjct: 121 ERKFMNPFNMPNLYQKLESDPRTKTLLADPTYRELIEQLQNKPSDLGTKLQDPRIMTTLS 180
Query: 628 VLLGVDLGSMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKKQALKEKELGNEAYKKKD 807
VLLGVDLGSMD NKKQAL+EKELGNEAYKKKD
Sbjct: 181 VLLGVDLGSMDEEEEVATPPPPPPPKKETKPEPMEEDLPENKKQALREKELGNEAYKKKD 240
Query: 808 FDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIA 987
FDTALKHYD+AKDLDPTNMTY+TNQAAVYFEKGDYG+CRELCEKAIEVGRENREDYRQIA
Sbjct: 241 FDTALKHYDKAKDLDPTNMTYITNQAAVYFEKGDYGQCRELCEKAIEVGRENREDYRQIA 300
Query: 988 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA 1167
KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA
Sbjct: 301 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA 360
Query: 1168 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 1347
LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNR ACYTKLLEFQL LKDCEEC
Sbjct: 361 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRGACYTKLLEFQLVLKDCEEC 420
Query: 1348 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQRCVMAQYNRHD 1527
IQLEPTFIKGYT KAAALEAMKDYTKAMDVYQKA+DLD+NCKEAADGYQ C+MAQYNRHD
Sbjct: 421 IQLEPTFIKGYTWKAAALEAMKDYTKAMDVYQKAVDLDSNCKEAADGYQHCMMAQYNRHD 480
Query: 1528 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI 1707
SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI
Sbjct: 481 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI 540
Query: 1708 AIR 1716
AIR
Sbjct: 541 AIR 543
>ref|XP_002687363.1| PREDICTED: RNA polymerase II associated protein 3 [Bos taurus].
Length = 631
Score = 108 bits (269), Expect = 2e-23
Identities = 76/269 (28%), Positives = 127/269 (47%), Gaps = 25/269 (9%)
Frame = +1
Query: 748 NKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRE 927
+ ++AL KE GN+ +K+ +D A++ Y + D DP N TN+A+ YF +
Sbjct: 129 DSQKALALKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAES 188
Query: 928 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA------------ 1071
C AI + R KAYAR G + F +K +DA Y K L
Sbjct: 189 DCNLAIALNRS-------YTKAYARRGAARFALQKLEDAKKDYEKVLELEPNNFEATNEL 241
Query: 1072 ----------EHRTP---DVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGD 1212
E P D + K + EK E+++ N A+ EK++GN F++G
Sbjct: 242 RKINQALTSKEDSYPGETDTMVKSDEGEKKQIEEQQ----NKQQAVSEKDRGNAFFKEGK 297
Query: 1213 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 1392
Y +A++ YT I + +A L +NRA Y K+ +++ A KDC + + L+ ++ K + R+
Sbjct: 298 YERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAVLLDGSYSKAFARRG 357
Query: 1393 AALEAMKDYTKAMDVYQKALDLDANCKEA 1479
A + ++A ++ L L+ K+A
Sbjct: 358 TARTFLGKLSEAKQDFETVLLLEPGNKQA 386
Score = 85.5 bits (210), Expect = 2e-16
Identities = 66/262 (25%), Positives = 126/262 (48%), Gaps = 20/262 (7%)
Frame = +1
Query: 922 RELCEKAIEVGREN-----------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYN-KS 1065
+++ +K +E+ R+N ++R+ K + + K+E K+ I Y+ ++
Sbjct: 33 KDIKQKDMELRRQNGVPEENLPPIRNGNFRKKKKGKVKESSKKTKDENAKNRIKSYDYEA 92
Query: 1066 LAEHRTPDVLKKCQQAEKI-------LKEQERLAYINPDLALEEKNKGNECFQKGDYPQA 1224
A+ +L + + E + +E +++ AL K KGN+ F++G Y +A
Sbjct: 93 WAKLDVDSILDELDKEESTHDSVSQESESEEDGIHVDSQKALALKEKGNKYFKQGKYDEA 152
Query: 1225 MKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 1404
++ YT+ + +P + L +NRA+ Y +L +F +A DC I L ++ K Y R+ AA
Sbjct: 153 IECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALNRSYTKAYARRGAARF 212
Query: 1405 AMKDYTKAMDVYQKALDLDANCKEAADGYQRCVMAQYNRHDS-PEDVKRRAMADPEVQQI 1581
A++ A Y+K L+L+ N EA + ++ A ++ DS P + +
Sbjct: 213 ALQKLEDAKKDYEKVLELEPNNFEATNELRKINQALTSKEDSYPGETD---------TMV 263
Query: 1582 MSDPAMRLILEQMQKDPQALSE 1647
SD + +E+ Q QA+SE
Sbjct: 264 KSDEGEKKQIEEQQNKQQAVSE 285
Score = 81.3 bits (199), Expect = 3e-15
Identities = 51/163 (31%), Positives = 83/163 (50%)
Frame = +1
Query: 106 LKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 285
LKEKGNK G D+A++CY++ + DP N VL +NR++AY + + A D +
Sbjct: 136 LKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIA 195
Query: 286 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFMN 465
L + K Y+R+ AA L + E+AK+ YE+ L+ E NN + L+ + L ++
Sbjct: 196 LNRSYTKAYARRGAARFALQKLEDAKKDYEKVLELEPNNFEATNELRKINQALTSKEDSY 255
Query: 466 PFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTK 594
P E+D K +D ++ IE+ +NK + K
Sbjct: 256 PG---------ETDTMVK---SDEGEKKQIEEQQNKQQAVSEK 286
Score = 66.2 bits (160), Expect = 1e-10
Identities = 36/117 (30%), Positives = 60/117 (51%)
Frame = +1
Query: 91 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDG 270
+Q K++GN G + A++CY+ I D N +L +NR+ AY K Y++A +D
Sbjct: 280 QQAVSEKDRGNAFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDC 339
Query: 271 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 441
+ V L + K ++R+ A FL + EAK+ +E L E N Q L ++ +
Sbjct: 340 TQAVLLDGSYSKAFARRGTARTFLGKLSEAKQDFETVLLLEPGNKQAVTELSKIKKK 396
>ref|XP_002704323.1| PREDICTED: RNA polymerase II associated protein 3 [Bos taurus].
Length = 705
Score = 108 bits (269), Expect = 2e-23
Identities = 76/269 (28%), Positives = 127/269 (47%), Gaps = 25/269 (9%)
Frame = +1
Query: 748 NKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRE 927
+ ++AL KE GN+ +K+ +D A++ Y + D DP N TN+A+ YF +
Sbjct: 129 DSQKALALKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAES 188
Query: 928 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA------------ 1071
C AI + R KAYAR G + F +K +DA Y K L
Sbjct: 189 DCNLAIALNRS-------YTKAYARRGAARFALQKLEDAKKDYEKVLELEPNNFEATNEL 241
Query: 1072 ----------EHRTP---DVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGD 1212
E P D + K + EK E+++ N A+ EK++GN F++G
Sbjct: 242 RKINQALTSKEDSYPGETDTMVKSDEGEKKQIEEQQ----NKQQAVSEKDRGNAFFKEGK 297
Query: 1213 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 1392
Y +A++ YT I + +A L +NRA Y K+ +++ A KDC + + L+ ++ K + R+
Sbjct: 298 YERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAVLLDGSYSKAFARRG 357
Query: 1393 AALEAMKDYTKAMDVYQKALDLDANCKEA 1479
A + ++A ++ L L+ K+A
Sbjct: 358 TARTFLGKLSEAKQDFETVLLLEPGNKQA 386
Score = 85.5 bits (210), Expect = 2e-16
Identities = 66/262 (25%), Positives = 126/262 (48%), Gaps = 20/262 (7%)
Frame = +1
Query: 922 RELCEKAIEVGREN-----------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYN-KS 1065
+++ +K +E+ R+N ++R+ K + + K+E K+ I Y+ ++
Sbjct: 33 KDIKQKDMELRRQNGVPEENLPPIRNGNFRKKKKGKVKESSKKTKDENAKNRIKSYDYEA 92
Query: 1066 LAEHRTPDVLKKCQQAEKI-------LKEQERLAYINPDLALEEKNKGNECFQKGDYPQA 1224
A+ +L + + E + +E +++ AL K KGN+ F++G Y +A
Sbjct: 93 WAKLDVDSILDELDKEESTHDSVSQESESEEDGIHVDSQKALALKEKGNKYFKQGKYDEA 152
Query: 1225 MKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 1404
++ YT+ + +P + L +NRA+ Y +L +F +A DC I L ++ K Y R+ AA
Sbjct: 153 IECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALNRSYTKAYARRGAARF 212
Query: 1405 AMKDYTKAMDVYQKALDLDANCKEAADGYQRCVMAQYNRHDS-PEDVKRRAMADPEVQQI 1581
A++ A Y+K L+L+ N EA + ++ A ++ DS P + +
Sbjct: 213 ALQKLEDAKKDYEKVLELEPNNFEATNELRKINQALTSKEDSYPGETD---------TMV 263
Query: 1582 MSDPAMRLILEQMQKDPQALSE 1647
SD + +E+ Q QA+SE
Sbjct: 264 KSDEGEKKQIEEQQNKQQAVSE 285
Score = 81.3 bits (199), Expect = 3e-15
Identities = 51/163 (31%), Positives = 83/163 (50%)
Frame = +1
Query: 106 LKE-sensitive protein IEF SSP 3521) [Canis
familiaris].
Length = 208
Score = 298 bits (764), Expect = 1e-80
Identities = 153/203 (75%), Positives = 161/203 (79%)
Frame = +1
Query: 475 MPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGS 654
MPN YQKLESDP T+ LL DP+Y+ELIEQL NKPSDLGTKLQDPR+MTTLSVLLG +
Sbjct: 1 MPNPYQKLESDPWTRMLLTDPTYQELIEQLGNKPSDLGTKLQDPRVMTTLSVLLGWE--- 57
Query: 655 MDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKKQALKEKELGNEAYKKKDFDTALKHYD 834
NKKQALKEKELGNEAYKKKDFDTALKHYD
Sbjct: 58 -----EEVATPPPPPPPKKDTKPEPMEDLPENKKQALKEKELGNEAYKKKDFDTALKHYD 112
Query: 835 RAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 1014
RAKDLDPTN+TYMTNQAAVYFEKGDY KC+ELCEKAIEVGRENREDYRQIAK YARIGNS
Sbjct: 113 RAKDLDPTNLTYMTNQAAVYFEKGDYSKCQELCEKAIEVGRENREDYRQIAKVYARIGNS 172
Query: 1015 YFKEEKYKDAIHFYNKSLAEHRT 1083
YFKEEKYK+AIHFYNKSLAEHRT
Sbjct: 173 YFKEEKYKNAIHFYNKSLAEHRT 195
>ref|XP_848822.1| PREDICTED: similar to stress-induced-phosphoprotein 1
(Hsp70/Hsp90-organizing protein) [Canis familiaris].
Length = 103
Score = 195 bits (496), Expect = 1e-49
Identities = 96/103 (93%), Positives = 99/103 (96%)
Frame = +1
Query: 1408 MKDYTKAMDVYQKALDLDANCKEAADGYQRCVMAQYNRHDSPEDVKRRAMADPEVQQIMS 1587
MKDYTKAMDVYQKALDLD+ CKEAADGYQRC+MAQYN HD+PEDVKRRAMADPEVQQIMS
Sbjct: 1 MKDYTKAMDVYQKALDLDSTCKEAADGYQRCMMAQYNHHDNPEDVKRRAMADPEVQQIMS 60
Query: 1588 DPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLIAIR 1716
DPA RLILEQMQKDPQALSEHLKNPVIAQKIQKL DVGLIAIR
Sbjct: 61 DPATRLILEQMQKDPQALSEHLKNPVIAQKIQKLTDVGLIAIR 103
>ref|XP_854647.1| PREDICTED: similar to stress-induced-phosphoprotein 1
(Hsp70/Hsp90-organizing protein) [Canis familiaris].
Length = 92
Score = 167 bits (422), Expect = 4e-41
Identities = 82/92 (89%), Positives = 86/92 (93%)
Frame = +1
Query: 88 MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED 267
MEQVNELKEKG+KALSAGNI DAL CYSEAIK DPQNHVLYSN SAAYAKKGDY+KAYED
Sbjct: 1 MEQVNELKEKGDKALSAGNIYDALLCYSEAIKSDPQNHVLYSNHSAAYAKKGDYRKAYED 60
Query: 268 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAK 363
G KT+DLKP+WGKGY RKAAALEFLNRFEEAK
Sbjct: 61 GYKTMDLKPNWGKGYWRKAAALEFLNRFEEAK 92
Score = 65.1 bits (157), Expect = 2e-10
Identities = 34/86 (39%), Positives = 54/86 (62%)
Frame = +1
Query: 1171 EEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI 1350
E K KG++ G+ A+ Y+EAIK +P++ LYSN +A Y K +++ A +D + +
Sbjct: 6 ELKEKGDKALSAGNIYDALLCYSEAIKSDPQNHVLYSNHSAAYAKKGDYRKAYEDGYKTM 65
Query: 1351 QLEPTFIKGYTRKAAALEAMKDYTKA 1428
L+P + KGY RKAAALE + + +A
Sbjct: 66 DLKPNWGKGYWRKAAALEFLNRFEEA 91
>ref|XP_534826.2| PREDICTED: similar to CG13570-PA isoform 1 [Canis familiaris].
Length = 629
Score = 107 bits (267), Expect = 4e-23
Identities = 74/270 (27%), Positives = 125/270 (46%), Gaps = 26/270 (9%)
Frame = +1
Query: 748 NKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRE 927
+ ++AL KE GN+ +K+ +D A++ Y + D DP N TN+A+ YF +
Sbjct: 129 DSQKALALKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAES 188
Query: 928 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK--------------- 1062
C AI + R KAY R G + F +K +DA Y K
Sbjct: 189 DCNLAIALNRS-------YTKAYTRRGAARFALQKLEDAKKDYEKVLELEPNNFEATNEL 241
Query: 1063 -----------SLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKG 1209
+L ++K ++ EK ++EQ+ N A+ EK+ GN F++G
Sbjct: 242 RKINQALTSKENLYPKEADTMIKSTEREEKQIEEQQ-----NKQQAISEKDLGNGFFKEG 296
Query: 1210 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 1389
Y +A++ YT I + +A L +NRA Y K+ +++ A KDC + I L+ ++ K + R+
Sbjct: 297 KYERAIECYTRGIAADGTNALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARR 356
Query: 1390 AAALEAMKDYTKAMDVYQKALDLDANCKEA 1479
A + +A ++ L L+ K+A
Sbjct: 357 GTARTFLGKLNEAKQDFETVLLLEPGNKQA 386
Score = 82.8 bits (203), Expect = 1e-15
Identities = 53/163 (32%), Positives = 85/163 (52%)
Frame = +1
Query: 106 LKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 285
LKEKGNK G D+A++CY++ + DP N VL +NR++AY + + A D +
Sbjct: 136 LKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIA 195
Query: 286 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFMN 465
L + K Y+R+ AA L + E+AK+ YE+ L+ E NN + L+ + L ++
Sbjct: 196 LNRSYTKAYTRRGAARFALQKLEDAKKDYEKVLELEPNNFEATNELRKINQALTSKE--- 252
Query: 466 PFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTK 594
NLY K E+D K+ + + IE+ +NK + K
Sbjct: 253 -----NLYPK-EADTMIKSTERE---EKQIEEQQNKQQAISEK 286
Score = 82.4 bits (202), Expect = 1e-15
Identities = 65/264 (24%), Positives = 126/264 (47%), Gaps = 22/264 (8%)
Frame = +1
Query: 922 RELCEKAIEVGREN-----------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYN-KS 1065
+++ +K +E+ R+N ++R+ K + + K+E K+ I Y+ ++
Sbjct: 33 KDIKQKDMELRRQNGVPEENLPPIRNGNFRKKKKGKPKESSKKTKDENTKNRIKSYDYEA 92
Query: 1066 LAEHRTPDVLKKCQQAEKI-------LKEQERLAYINPDLALEEKNKGNECFQKGDYPQA 1224
A+ +L + + E + +E +++ AL K KGN+ F++G Y +A
Sbjct: 93 WAKLDVDSILDELDKEESTHDSVSQESESEEDGIHVDSQKALALKEKGNKYFKQGKYDEA 152
Query: 1225 MKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 1404
++ YT+ + +P + L +NRA+ Y +L +F +A DC I L ++ K YTR+ AA
Sbjct: 153 IECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALNRSYTKAYTRRGAARF 212
Query: 1405 AMKDYTKAMDVYQKALDLDANCKEAADGYQR---CVMAQYNRHDSPEDVKRRAMADPEVQ 1575
A++ A Y+K L+L+ N EA + ++ + ++ N + D ++ E Q
Sbjct: 213 ALQKLEDAKKDYEKVLELEPNNFEATNELRKINQALTSKENLYPKEADTMIKSTEREEKQ 272
Query: 1576 QIMSDPAMRLILEQMQKDPQALSE 1647
+E+ Q QA+SE
Sbjct: 273 -----------IEEQQNKQQAISE 285
Score = 64.7 bits (156), Expect = 3e-10
Identities = 40/144 (27%), Positives = 69/144 (47%)
Frame = +1
Query: 91 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDG 270
+Q K+ GN G + A++CY+ I D N +L +NR+ AY K Y++A +D
Sbjct: 280 QQAISEKDLGNGFFKEGKYERAIECYTRGIAADGTNALLPANRAMAYLKIQKYEEAEKDC 339
Query: 271 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAE 450
+ + L + K ++R+ A FL + EAK+ +E L E N Q L ++ + +
Sbjct: 340 TQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKKPLK 399
Query: 451 RKFMNPFNMPNLYQKLESDPRTKA 522
+ + NL Q ++ T A
Sbjct: 400 KVIIE--ETGNLIQTIDVPESTTA 421
>ref|XP_851525.1| PREDICTED: similar to CG13570-PA isoform 3 [Canis familiaris].
Length = 663
Score = 107 bits (267), Expect = 4e-23
Identities = 74/270 (27%), Positives = 125/270 (46%), Gaps = 26/270 (9%)
Frame = +1
Query: 748 NKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRE 927
+ ++AL KE GN+ +K+ +D A++ Y + D DP N TN+A+ YF +
Sbjct: 129 DSQKALALKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAES 188
Query: 928 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK--------------- 1062
C AI + R KAY R G + F +K +DA Y K
Sbjct: 189 DCNLAIALNRS-------YTKAYTRRGAARFALQKLEDAKKDYEKVLELEPNNFEATNEL 241
Query: 1063 -----------SLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKG 1209
+L ++K ++ EK ++EQ+ N A+ EK+ GN F++G
Sbjct: 242 RKINQALTSKENLYPKEADTMIKSTEREEKQIEEQQ-----NKQQAISEKDLGNGFFKEG 296
Query: 1210 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 1389
Y +A++ YT I + +A L +NRA Y K+ +++ A KDC + I L+ ++ K + R+
Sbjct: 297 KYERAIECYTRGIAADGTNALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARR 356
Query: 1390 AAALEAMKDYTKAMDVYQKALDLDANCKEA 1479
AKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 285
LKEKGNK G D+A++CY++ + DP N VL +NR++AY + + A D +
Sbjct: 136 LKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIA 195
Query: 286 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFMN 465
L + K Y+R+ AA L + E+AK+ YE+ L+ E NN + L+ + L ++
Sbjct: 196 LNRSYTKAYARRGAARFALQKLEDAKKDYEKVLELEPNNFEATNELRKINQALTSKEDSY 255
Query: 466 PFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTK 594
P E+D K +D ++ IE+ +NK + K
Sbjct: 256 PG---------ETDTMVK---SDEGEKKQIEEQQNKQQAVSEK 286
Score = 70.5 bits (171), Expect = 5e-12
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
Frame = +1
Query: 91 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDG 270
+Q K++GN G + A++CY+ I D N +L +NR+ AY K Y++A +D
Sbjct: 280 QQAVSEKDRGNAFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDC 339
Query: 271 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAE 450
+ V L + K ++R+ A FL + EAK+ +E L E N Q L ++ L E
Sbjct: 340 TQAVLLDGSYSKAFARRGTARTFLGKLSEAKQDFETVLLLEPGNKQAVTELSKIKKELIE 399
Query: 451 R-----KFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRN 570
+ F++ N+ + +++ P + P + +IE+ N
Sbjct: 400 KGHWDDVFLDSTQRQNVIKPIDNLPHLGS--TKPLKKVIIEETGN 442
>ref|XP_002696071.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C, member 7 [Bos taurus].
Length = 403
Score = 101 bits (251), Expect = 3e-21
Identities = 65/238 (27%), Positives = 118/238 (49%), Gaps = 6/238 (2%)
Frame = +1
Query: 751 KKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCREL 930
K++A KE GN Y KKD++ A +Y +A D+ P N +Y N+AA G + +
Sbjct: 25 KREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGD 84
Query: 931 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 1110
++++ + + + K + +GN+ ++ A+ +K+ + +
Sbjct: 85 AQQSVRLDDTFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVIE 144
Query: 1111 AEKILKE--QERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK----DAK 1272
EKI + ++R N +K GN+ F++G+Y A + YTEA+ +P +AK
Sbjct: 145 YEKIAETDFEKRDFRKNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAK 204
Query: 1273 LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQK 1446
LY NR +KL + A++DC ++L+ T+IK Y R+A + Y +A+ Y+K
Sbjct: 205 LYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYLDTEQYEEAVRDYEK 262
Score = 70.9 bits (172), Expect = 4e-12
Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 17/190 (8%)
Frame = +1
Query: 1177 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 1356
K +GN + K DY +A +YT+AI PK+A Y NRAA L +F+ AL D ++ ++L
Sbjct: 32 KEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRL 91
Query: 1357 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAAD---------GYQRCVMA 1509
+ TF++G+ R+ ++ + A +Q+AL+LD +A Y++
Sbjct: 92 DDTFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVIEYEKIAET 151
Query: 1510 QYNRHDSPEDVKRRAMADPEVQQIMSDP----AMRLILEQMQKDPQALSEHLK----NPV 1665
+ + D ++ K + + + A L E + DP + + K
Sbjct: 152 DFEKRDFRKNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGT 211
Query: 1666 IAQKIQKLMD 1695
+ K++KL D
Sbjct: 212 VNSKLRKLDD 221
Score = 60.8 bits (146), Expect = 4e-09
Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 17/187 (9%)
Frame = +1
Query: 109 KEKGNKALSAGNIDDALQCYSEAIKLDPQ----NHVLYSNRSAAYAKKGDYQKAYEDGCK 276
KE GNKA GN A + Y+EA+ +DP N LY NR +K A ED
Sbjct: 169 KEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTN 228
Query: 277 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERK 456
V L + K Y R+A ++EEA R YE+ + E + K+ L+N + L + K
Sbjct: 229 AVKLDDTYIKAYLRRAQCYLDTEQYEEAVRDYEKVYQTE-KTKEHKQLLKNAQLELKKSK 287
Query: 457 FMNPFNMPNLYQKLESDP-----RTKALLADP-----SYRELIEQLRNKPSDLG---TKL 597
+ + + + + D R +AL+ P + E+ ++ K ++G T L
Sbjct: 288 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTIL 347
Query: 598 QDPRIMT 618
DP+ T
Sbjct: 348 SDPKKKT 354
Score = 54.7 bits (130), Expect = 3e-07
Identities = 71/367 (19%), Positives = 141/367 (38%)
Frame = +1
Query: 94 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGC 273
+ KE+GN + + ++A Y++AI + P+N Y NR+A G +++A D
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQ 86
Query: 274 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAER 453
++V L + +G+ R+ L A R+++ L+ + N Q ++ +N A +
Sbjct: 87 QSVRLDDTFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVIEYE 146
Query: 454 KFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLSVL 633
K ++K + KAL A ++ NK G + T
Sbjct: 147 KIAE-----TDFEKRDFRKNAKALKAK-------KEDGNKAFKEGNYKLAYELYTE---A 191
Query: 634 LGVDLGSMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKKQALKEKELGNEAYKKKDFD 813
LG+D ++ K A G K + D
Sbjct: 192 LGIDPNNI-------------------------------KTNAKLYCNRGTVNSKLRKLD 220
Query: 814 TALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIAKA 993
A++ A LD T + +A Y + Y + EK + E ++++Q+ K
Sbjct: 221 DAIEDCTNAVKLDDTYIKAYLRRAQCYLDTEQYEEAVRDYEKVYQT--EKTKEHKQLLK- 277
Query: 994 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALE 1173
N+ + +K K ++ + ++ + D +KK + ++ +R + + ++ E
Sbjct: 278 -----NAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKE 332
Query: 1174 EKNKGNE 1194
E+ K E
Sbjct: 333 EEKKFKE 339
Score = 54.3 bits (129), Expect = 4e-07
Identities = 41/165 (24%), Positives = 73/165 (44%)
Frame = +1
Query: 748 NKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRE 927
N K +KE GN+A+K+ ++ A + Y A +DP N + A +Y +G
Sbjct: 161 NAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNN---IKTNAKLYCNRGTVNSKLR 217
Query: 928 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 1107
+ AIE + KAY R Y E+Y++A+ Y K +T + + +
Sbjct: 218 KLDDAIEDCTNAVKLDDTYIKAYLRRAQCYLDTEQYEEAVRDYEKVYQTEKTKEHKQLLK 277
Query: 1108 QAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTE 1242
A+ LK+ +R Y + +KN + +K +A+ H+ +
Sbjct: 278 NAQLELKKSKRKDYYK--ILGVDKNASEDEIKKAYRKRALMHHPD 320
>ref|XP_002694666.1| PREDICTED: tetratricopeptide repeat domain 28 [Bos taurus].
Length = 2447
Score = 87.0 bits (214), Expect = 5e-17
Identities = 48/136 (35%), Positives = 68/136 (50%)
Frame = +1
Query: 103 ELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 282
E + N+A G+ A+ Y+EA+ +DPQN +LYSNRSAAY K Y KA +D K
Sbjct: 29 EKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKAR 88
Query: 283 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFM 462
L P W K Y R+ AL++L R +A + GL + + QL G+ + R +
Sbjct: 89 LLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSL 148
Query: 463 NPFNMPNLYQKLESDP 510
P KL+ P
Sbjct: 149 EPTYQQLQKMKLDKSP 164
Score = 58.2 bits (139), Expect = 3e-08
Identities = 32/113 (28%), Positives = 55/113 (48%)
Frame = +1
Query: 1168 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 1347
+E+ + N+ GD+ A+ Y EA+ +P++ LYSNR+A Y K+ ++ AL D +
Sbjct: 28 VEKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKA 87
Query: 1348 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQRCVM 1506
L P + K Y R+ AL+ + + A+ + L D + G M
Sbjct: 88 RLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAM 140
>ref|NP_001179720.1| small glutamine-rich tetratricopeptide repeat-containing protein
beta [Bos taurus].
Length = 304
Score = 86.7 bits (213), Expect = 7e-17
Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 6/169 (3%)
Frame = +1
Query: 67 NGVPGRTMEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGD 246
N VP M + ++LK++GN + N A+ CY++AI+LD N V Y NR+AA +K G
Sbjct: 76 NSVP-EDMGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDSNNAVYYCNRAAAQSKLGH 134
Query: 247 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 426
Y A +D K + + + K Y R AL +N+F+EA +Y++ L + N K L+
Sbjct: 135 YTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFQEAVTSYQKALDLDPENDSYKSNLK 194
Query: 427 NMEARLAERKFMNP------FNMPNLYQKLESDPRTKALLADPSYRELI 555
E +L R+ +P F+M +L +L+ +P ++L+
Sbjct: 195 IAEQKL--REVSSPTGTGLSFDMASLINNPAFISMAASLMQNPQVQQLM 241
Score = 77.0 bits (188), Expect = 6e-14
Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 17/154 (11%)
Frame = +1
Query: 1177 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 1356
K++GN ++ +Y A+ YT+AI+ + +A Y NRAA +KL + A+KDCE+ I +
Sbjct: 89 KDEGNNHMKEENYAAAVDCYTQAIELDSNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAI 148
Query: 1357 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-------ANCKEAADGYQRCV---- 1503
+ + K Y R AL AM + +A+ YQKALDLD +N K A +
Sbjct: 149 DSKYSKAYGRMGLALTAMNKFQEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTG 208
Query: 1504 ------MAQYNRHDSPEDVKRRAMADPEVQQIMS 1587
MA + + + M +P+VQQ+MS
Sbjct: 209 TGLSFDMASLINNPAFISMAASLMQNPQVQQLMS 242
Score = 53.5 bits (127), Expect = 7e-07
Identities = 31/99 (31%), Positives = 52/99 (52%)
Frame = +1
Query: 772 KELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEV 951
K+ GN K++++ A+ Y +A +LD N Y N+AA + G Y + CEKAI +
Sbjct: 89 KDEGNNHMKEENYAAAVDCYTQAIELDSNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAI 148
Query: 952 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 1068
+ +KAY R+G + K+++A+ Y K+L
Sbjct: 149 D-------SKYSKAYGRMGLALTAMNKFQEAVTSYQKAL 180
>ref|XP_002696339.1| PREDICTED: small glutamine-rich tetratricopeptide repeat
(TPR)-containing, beta-like [Bos taurus].
Length = 304
Score = 86.7 bits (213), Expect = 7e-17
Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 6/169 (3%)
Frame = +1
Query: 67 NGVPGRTMEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGD 246
N VP M + ++LK++GN + N A+ CY++AI+LD N V Y NR+AA +K G
Sbjct: 76 NSVP-EDMGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDSNNAVYYCNRAAAQSKLGH 134
Query: 247 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 426
Y A +D K + + + K Y R AL +N+F+EA +Y++ L + N K L+
Sbjct: 135 YTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFQEAVTSYQKALDLDPENDSYKSNLK 194
Query: 427 NMEARLAERKFMNP------FNMPNLYQKLESDPRTKALLADPSYRELI 555
E +L R+ +P F+M +L +L+ +P ++L+
Sbjct: 195 IAEQKL--REVSSPTGTGLSFDMASLINNPAFISMAASLMQNPQVQQLM 241
Score = 77.0 bits (188), Expect = 6e-14
Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 17/154 (11%)
Frame = +1
Query: 1177 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 1356
K++GN ++ +Y A+ YT+AI+ + +A Y NRAA +KL + A+KDCE+ I +
Sbjct: 89 KDEGNNHMKEENYAAAVDCYTQAIELDSNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAI 148
Query: 1357 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-------ANCKEAADGYQRCV---- 1503
+ + K Y R AL AM + +A+ YQKALDLD +N K A +
Sbjct: 149 DSKYSKAYGRMGLALTAMNKFQEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTG 208
Query: 1504 ------MAQYNRHDSPEDVKRRAMADPEVQQIMS 1587
MA + + + M +P+VQQ+MS
Sbjct: 209 TGLSFDMASLINNPAFISMAASLMQNPQVQQLMS 242
Score = 53.5 bits (127), Expect = 7e-07
Identities = 31/99 (31%), Positives = 52/99 (52%)
Frame = +1
Query: 772 KELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEV 951
K+ GN K++++ A+ Y +A +LD N Y N+AA + G Y + CEKAI +
Sbjct: 89 KDEGNNHMKEENYAAAVDCYTQAIELDSNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAI 148
Query: 952 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 1068
+ +KAY R+G + K+++A+ Y K+L
Sbjct: 149 D-------SKYSKAYGRMGLALTAMNKFQEAVTSYQKAL 180
>ref|NP_001033119.1| small glutamine-rich tetratricopeptide repeat-containing protein
alpha [Bos taurus].
Length = 313
Score = 83.2 bits (204), Expect = 8e-16
Identities = 50/161 (31%), Positives = 80/161 (49%)
Frame = +1
Query: 94 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGC 273
+ LK +GN+ + N + A+ Y +AI+L+P N V + NR+AAY+K G+Y A +D
Sbjct: 90 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 149
Query: 274 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAER 453
+ + + P + K Y R AL LN+ EA Y + L+ + +N K L+ E RL R
Sbjct: 150 RAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKSNLKVAELRL--R 207
Query: 454 KFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKP 576
+ +P + LL +PS+ + L N P
Sbjct: 208 EAPSPTGGVGSFD-------IAGLLNNPSFMSMASNLMNNP 241
Score = 77.8 bits (190), Expect = 3e-14
Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 17/154 (11%)
Frame = +1
Query: 1177 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 1356
K +GNE + ++ A+ Y +AI+ NP +A + NRAA Y+KL + A++DCE I +
Sbjct: 95 KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 154
Query: 1357 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-------ANCKEA----------AD 1485
+P++ K Y R AL ++ +T+A+ Y+KAL+LD +N K A
Sbjct: 155 DPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKSNLKVAELRLREAPSPTG 214
Query: 1486 GYQRCVMAQYNRHDSPEDVKRRAMADPEVQQIMS 1587
G +A + S + M +P+VQQ+MS
Sbjct: 215 GVGSFDIAGLLNNPSFMSMASNLMNNPQVQQLMS 248
Score = 62.0 bits (149), Expect = 2e-09
Identities = 34/104 (32%), Positives = 57/104 (54%)
Frame = +1
Query: 757 QALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCE 936
+A + K GNE K ++F+ A+ Y +A +L+P N Y N+AA Y + G+Y + CE
Sbjct: 90 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 149
Query: 937 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 1068
+AI + +KAY R+G + K+ +A+ +Y K+L
Sbjct: 150 RAICID-------PSYSKAYGRMGLALSSLNKHTEAVAYYRKAL 186
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 76,869,574
Number of extensions: 2279183
Number of successful extensions: 10163
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 9895
Number of HSP's successfully gapped: 102
Length of query: 659
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 550
Effective length of database: 14,074,782
Effective search space: 7741130100
Effective search space used: 7741130100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
+ +A ++ L L+ K+A
Sbjct: 357 GTARTFLGKLNEAKQDFETVLLLEPGNKQA 386
Score = 82.8 bits (203), Expect = 1e-15
Identities = 53/163 (32%), Positives = 85/163 (52%)
Frame = +1
Query: 106 LKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 285
LKEKGNK G D+A++CY++ + DP N VL +NR++AY + + A D +
Sbjct: 136 LKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIA 195
Query: 286 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFMN 465
L + K Y+R+ AA L + E+AK+ YE+ L+ E NN + L+ + L ++
Sbjct: 196 LNRSYTKAYTRRGAARFALQKLEDAKKDYEKVLELEPNNFEATNELRKINQALTSKE--- 252
Query: 466 PFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTK 594
NLY K E+D K+ + + IE+ +NK + K
Sbjct: 253 -----NLYPK-EADTMIKSTERE---EKQIEEQQNKQQAISEK 286
Score = 82.4 bits (202), Expect = 1e-15
Identities = 65/264 (24%), Positives = 126/264 (47%), Gaps = 22/264 (8%)
Frame = +1
Query: 922 RELCEKAIEVGREN-----------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYN-KS 1065
+++ +K +E+ R+N ++R+ K + + K+E K+ I Y+ ++
Sbjct: 33 KDIKQKDMELRRQNGVPEENLPPIRNGNFRKKKKGKPKESSKKTKDENTKNRIKSYDYEA 92
Query: 1066 LAEHRTPDVLKKCQQAEKI-------LKEQERLAYINPDLALEEKNKGNECFQKGDYPQA 1224
A+ +L + + E + +E +++ AL K KGN+ F++G Y +A
Sbjct: 93 WAKLDVDSILDELDKEESTHDSVSQESESEEDGIHVDSQKALALKEKGNKYFKQGKYDEA 152
Query: 1225 MKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 1404
++ YT+ + +P + L +NRA+ Y +L +F +A DC I L ++ K YTR+ AA
Sbjct: 153 IECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALNRSYTKAYTRRGAARF 212
Query: 1405 AMKDYTKAMDVYQKALDLDANCKEAADGYQR---CVMAQYNRHDSPEDVKRRAMADPEVQ 1575
A++ A Y+K L+L+ N EA + ++ + ++ N + D ++ E Q
Sbjct: 213 ALQKLEDAKKDYEKVLELEPNNFEATNELRKINQALTSKENLYPKEADTMIKSTEREEKQ 272
Query: 1576 QIMSDPAMRLILEQMQKDPQALSE 1647
+E+ Q QA+SE
Sbjct: 273 -----------IEEQQNKQQAISE 285
Score = 66.2 bits (160), Expect = 1e-10
Identities = 37/121 (30%), Positives = 61/121 (50%)
Frame = +1
Query: 91 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDG 270
+Q K+ GN G + A++CY+ I D N +L +NR+ AY K Y++A +D
Sbjct: 280 QQAISEKDLGNGFFKEGKYERAIECYTRGIAADGTNALLPANRAMAYLKIQKYEEAEKDC 339
Query: 271 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAE 450
+ + L + K ++R+ A FL + EAK+ +E L E N Q L ++ L E
Sbjct: 340 TQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKDLIE 399
Query: 451 R 453
+
Sbjct: 400 K 400
>ref|XP_535258.1| PREDICTED: similar to small glutamine-rich tetratricopeptide repeat
(TPR)-containing, beta [Canis familiaris].
Length = 304
Score = 89.4 bits (220), Expect = 1e-17
Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 6/169 (3%)
Frame = +1
Query: 67 NGVPGRTMEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGD 246
N VP + + ++LK++GN + N A+ CY++AI+LDP N V Y NR+AA +K G
Sbjct: 76 NSVP-EDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGH 134
Query: 247 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 426
Y A +D K + + + K Y R AL +N+FEEA +Y++ L + N K L+
Sbjct: 135 YTDAIKDCEKAIAIDSKYSKAYGRMGLALTAINKFEEAVTSYQKALDLDPENDSYKSNLK 194
Query: 427 NMEARLAERKFMNP------FNMPNLYQKLESDPRTKALLADPSYRELI 555
E +L R+ +P F+M +L +L+ +P ++L+
Sbjct: 195 IAEQKL--REVSSPTGTGLSFDMASLINNPAFISMAASLMQNPQVQQLM 241
Score = 78.6 bits (192), Expect = 2e-14
Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Frame = +1
Query: 1177 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 1356
K++GN ++ +Y A+ YT+AI+ +P +A Y NRAA +KL + A+KDCE+ I +
Sbjct: 89 KDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAI 148
Query: 1357 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-------ANCKEAADGYQRCV---- 1503
+ + K Y R AL A+ + +A+ YQKALDLD +N K A +
Sbjct: 149 DSKYSKAYGRMGLALTAINKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTG 208
Query: 1504 ------MAQYNRHDSPEDVKRRAMADPEVQQIMS 1587
MA + + + M +P+VQQ+MS
Sbjct: 209 TGLSFDMASLINNPAFISMAASLMQNPQVQQLMS 242
Score = 56.2 bits (134), Expect = 1e-07
Identities = 32/99 (32%), Positives = 53/99 (53%)
Frame = +1
Query: 772 KELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEV 951
K+ GN K++++ A+ Y +A +LDP N Y N+AA + G Y + CEKAI +
Sbjct: 89 KDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAI 148
Query: 952 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 1068
+ +KAY R+G + K+++A+ Y K+L
Sbjct: 149 D-------SKYSKAYGRMGLALTAINKFEEAVTSYQKAL 180
>ref|XP_543463.2| PREDICTED: similar to TPR repeat containing protein KIAA1043
isoform 1 [Canis familiaris].
Length = 2469
Score = 87.0 bits (214), Expect = 6e-17
Identities = 48/136 (35%), Positives = 68/136 (50%)
Frame = +1
Query: 103 ELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 282
E + N+A G+ A+ Y+EA+ +DPQN +LYSNRSAAY K Y KA +D K
Sbjct: 60 EKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKAR 119
Query: 283 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFM 462
L P W K Y R+ AL++L R +A + GL + + QL G+ + R +
Sbjct: 120 LLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSL 179
Query: 463 NPFNMPNLYQKLESDP 510
P KL+ P
Sbjct: 180 EPTYQQLQKMKLDKSP 195
Score = 58.2 bits (139), Expect = 3e-08
Identities = 32/113 (28%), Positives = 55/113 (48%)
Frame = +1
Query: 1168 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 1347
+E+ + N+ GD+ A+ Y EA+ +P++ LYSNR+A Y K+ ++ AL D +
Sbjct: 59 VEKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKA 118
Query: 1348 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQRCVM 1506
L P + K Y R+ AL+ + + A+ + L D + G M
Sbjct: 119 RLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAM 171
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 80,390,467
Number of extensions: 2358693
Number of successful extensions: 11234
Number of sequences better than 1.0e-05: 62
Number of HSP's gapped: 10821
Number of HSP's successfully gapped: 151
Length of query: 659
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 550
Effective length of database: 15,240,880
Effective search space: 8382484000
Effective search space used: 8382484000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012586
(1977 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353842.1| PREDICTED: stress-induced-phosphoprotein 1-l... 1028 0.0
Alignment gi|XP_003134059.1| PREDICTED: small glutamine-rich tetratricope... 89 7e-18
Alignment gi|XP_003361593.1| PREDICTED: RNA polymerase II-associated prot... 86 8e-17
Alignment gi|XP_003123075.1| PREDICTED: small glutamine-rich tetratricope... 84 4e-16
Alignment gi|XP_003129909.2| PREDICTED: tetratricopeptide repeat protein ... 80 3e-15
Alignment gi|NP_001034837.1| UDP-N-acetylglucosamine--peptide N-acetylglu... 80 4e-15
Alignment gi|XP_003358088.1| PREDICTED: dnaJ homolog subfamily C member 7... 79 7e-15
Alignment gi|XP_003358087.1| PREDICTED: dnaJ homolog subfamily C member 7... 79 7e-15
Alignment gi|XP_003131457.1| PREDICTED: dnaJ homolog subfamily C member 7... 79 7e-15
Alignment gi|NP_001177088.1| mitochondrial import receptor subunit TOM34 ... 73 5e-13
>ref|XP_003353842.1| PREDICTED: stress-induced-phosphoprotein 1-like [Sus scrofa].
Length = 543
Score = 1028 bits (2657), Expect = 0.0
Identities = 514/543 (94%), Positives = 514/543 (94%)
Frame = +1
Query: 88 MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED 267
MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED
Sbjct: 1 MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED 60
Query: 268 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA 447
GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA
Sbjct: 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA 120
Query: 448 ERKFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLS 627
ERKFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLS
Sbjct: 121 ERKFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLS 180
Query: 628 VLLGVDLGSMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKKQALKEKELGNEAYKKKD 807
VLLGVDLGSMD NKKQALKEKELGNEAYKKKD
Sbjct: 181 VLLGVDLGSMDEEEEVATPPPPPPPKKEPKPEPMEEDLPENKKQALKEKELGNEAYKKKD 240
Query: 808 FDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIA 987
FDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIA
Sbjct: 241 FDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIA 300
Query: 988 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA 1167
KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA
Sbjct: 301 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA 360
Query: 1168 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 1347
LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC
Sbjct: 361 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 420
Query: 1348 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQRCVMAQYNRHD 1527
IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQRCVMAQYNRHD
Sbjct: 421 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQRCVMAQYNRHD 480
Query: 1528 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI 1707
SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI
Sbjct: 481 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI 540
Query: 1708 AIR 1716
AIR
Sbjct: 541 AIR 543
>ref|XP_003134059.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing
protein beta-like [Sus scrofa].
Length = 304
Score = 89.4 bits (220), Expect = 7e-18
Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 6/169 (3%)
Frame = +1
Query: 67 NGVPGRTMEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGD 246
N VP + + ++LK++GN + N A+ CY++AI+LDP N V Y NR+AA +K G
Sbjct: 76 NSVP-EDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGH 134
Query: 247 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 426
Y A +D K + + + K Y R AL +N+FEEA +Y++ L + N K L+
Sbjct: 135 YTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLK 194
Query: 427 NMEARLAERKFMNP------FNMPNLYQKLESDPRTKALLADPSYRELI 555
E +L R+ +P F+M +L +L+ +P ++L+
Sbjct: 195 IAEQKL--REVSSPTGTGLSFDMASLINNPAFISMAASLMQNPQVQQLM 241
Score = 80.1 bits (196), Expect = 4e-15
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Frame = +1
Query: 1177 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 1356
K++GN ++ +Y A+ YT+AI+ +P +A Y NRAA +KL + A+KDCE+ I +
Sbjct: 89 KDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAI 148
Query: 1357 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-------ANCKEAADGYQRCV---- 1503
+ + K Y R AL AM + +A+ YQKALDLD +N K A +
Sbjct: 149 DSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTG 208
Query: 1504 ------MAQYNRHDSPEDVKRRAMADPEVQQIMS 1587
MA + + + M +P+VQQ+MS
Sbjct: 209 TGLSFDMASLINNPAFISMAASLMQNPQVQQLMS 242
Score = 56.6 bits (135), Expect = 5e-08
Identities = 32/99 (32%), Positives = 53/99 (53%)
Frame = +1
Query: 772 KELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEV 951
K+ GN K++++ A+ Y +A +LDP N Y N+AA + G Y + CEKAI +
Sbjct: 89 KDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAI 148
Query: 952 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 1068
+ +KAY R+G + K+++A+ Y K+L
Sbjct: 149 D-------SKYSKAYGRMGLALTAMNKFEEAVTSYQKAL 180
>ref|XP_003361593.1| PREDICTED: RNA polymerase II-associated protein 3 [Sus scrofa].
Length = 505
Score = 85.9 bits (211), Expect = 8e-17
Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 21/233 (9%)
Frame = +1
Query: 844 DLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK 1023
D DP N TN+A+ YF + C A+ + R KAY R G + F
Sbjct: 2 DADPYNPVLPTNRASAYFRLKKFAVAESDCNLALALNRS-------YTKAYLRRGAARFA 54
Query: 1024 EEKYKDAIHFYNKSLA----EHRTPDVLKKCQQA------------EKILKEQE-RLAYI 1152
+K +DA Y K L + L+K QA +K++K E ++
Sbjct: 55 LQKLEDAKKDYEKVLELEPNNFEATNELRKINQALTSKENSCPKESDKMIKSAEGEKKHV 114
Query: 1153 ----NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQ 1320
N A+ EK++GN F++G Y +A++ YT + + +A L +NRA Y K+ +++
Sbjct: 115 EEQQNKQQAISEKDRGNAFFKEGKYERAIECYTRGMAADGANALLPANRAMAYLKIQKYE 174
Query: 1321 LALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEA 1479
A KDC + I L+ ++ K + R+ A + +A ++ L L+ K+A
Sbjct: 175 EAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQA 227
Score = 70.1 bits (170), Expect = 4e-12
Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
Frame = +1
Query: 91 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDG 270
+Q K++GN G + A++CY+ + D N +L +NR+ AY K Y++A +D
Sbjct: 121 QQAISEKDRGNAFFKEGKYERAIECYTRGMAADGANALLPANRAMAYLKIQKYEEAEKDC 180
Query: 271 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAE 450
+ + L + K ++R+ A FL + EAK+ +E L E N Q L ++ L +
Sbjct: 181 TQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKELID 240
Query: 451 R-----KFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRN 570
R F++ N+ + +++ P + P + +IE+ N
Sbjct: 241 RGHWDDVFLDSTQRQNVVRPIDNPPHRGS--TKPLKKVIIEETGN 283
Score = 53.1 bits (126), Expect = 5e-07
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Frame = +1
Query: 1255 NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMD 1434
+P + L +NRA+ Y +L +F +A DC + L ++ K Y R+ AA A++ A
Sbjct: 4 DPYNPVLPTNRASAYFRLKKFAVAESDCNLALALNRSYTKAYLRRGAARFALQKLEDAKK 63
Query: 1435 VYQKALDLDANCKEAADGYQRCVMAQYNRHDS-PEDVKRRAMADPEVQQIMSDPAMRLIL 1611
Y+K L+L+ N EA + ++ A ++ +S P++ + I S + +
Sbjct: 64 DYEKVLELEPNNFEATNELRKINQALTSKENSCPKESDK---------MIKSAEGEKKHV 114
Query: 1612 EQMQKDPQALSE 1647
E+ Q QA+SE
Sbjct: 115 EEQQNKQQAISE 126
Score = 50.8 bits (120), Expect = 3e-06
Identities = 31/109 (28%), Positives = 53/109 (48%)
Frame = +1
Query: 187 DPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR 366
DP N VL +NR++AY + + A D + L + K Y R+ AA L + E+AK+
Sbjct: 4 DPYNPVLPTNRASAYFRLKKFAVAESDCNLALALNRSYTKAYLRRGAARFALQKLEDAKK 63
Query: 367 TYEEGLKHEANNPQLKEGLQNMEARLAERKFMNPFNMPNLYQKLESDPR 513
YE+ L+ E NN + L+ + L ++ P + + E + +
Sbjct: 64 DYEKVLELEPNNFEATNELRKINQALTSKENSCPKESDKMIKSAEGEKK 112
>ref|XP_003123075.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing
protein alpha-like [Sus scrofa].
Length = 313
Score = 83.6 bits (205), Expect = 4e-16
Identities = 50/161 (31%), Positives = 80/161 (49%)
Frame = +1
Query: 94 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGC 273
+ LK +GN+ + N + A+ Y +AI+L+P N V + NR+AAY+K G+Y A +D
Sbjct: 90 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPSNAVYFCNRAAAYSKLGNYAGAVQDCE 149
Query: 274 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAER 453
+ + + P + K Y R AL LN+ EA Y + L+ + +N K L+ E RL R
Sbjct: 150 RAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKSNLKVAELRL--R 207
Query: 454 KFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKP 576
+ +P + LL +PS+ + L N P
Sbjct: 208 EAPSPTGGVGSFD-------IAGLLNNPSFMSMASNLMNNP 241
Score = 78.2 bits (191), Expect = 2e-14
Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 17/154 (11%)
Frame = +1
Query: 1177 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 1356
K +GNE + ++ A+ Y +AI+ NP +A + NRAA Y+KL + A++DCE I +
Sbjct: 95 KTEGNEQMKVENFEAAVHFYGKAIELNPSNAVYFCNRAAAYSKLGNYAGAVQDCERAICI 154
Query: 1357 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-------ANCKEA----------AD 1485
+P++ K Y R AL ++ +T+A+ Y+KAL+LD +N K A
Sbjct: 155 DPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKSNLKVAELRLREAPSPTG 214
Query: 1486 GYQRCVMAQYNRHDSPEDVKRRAMADPEVQQIMS 1587
G +A + S + M +P+VQQ+MS
Sbjct: 215 GVGSFDIAGLLNNPSFMSMASNLMNNPQVQQLMS 248
Score = 62.4 bits (150), Expect = 9e-10
Identities = 34/104 (32%), Positives = 58/104 (55%)
Frame = +1
Query: 757 QALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCE 936
+A + K GNE K ++F+ A+ Y +A +L+P+N Y N+AA Y + G+Y + CE
Sbjct: 90 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPSNAVYFCNRAAAYSKLGNYAGAVQDCE 149
Query: 937 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 1068
+AI + +KAY R+G + K+ +A+ +Y K+L
Sbjct: 150 RAICID-------PSYSKAYGRMGLALSSLNKHTEAVAYYRKAL 186
>ref|XP_003129909.2| PREDICTED: tetratricopeptide repeat protein 12 isoform 1 [Sus
scrofa].
Length = 705
Score = 80.5 bits (197), Expect = 3e-15
Identities = 44/126 (34%), Positives = 69/126 (54%)
Frame = +1
Query: 1114 EKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAA 1293
EK KE+ + N LA K KGNE F KGDY A+ Y+E +++ LY+NRA
Sbjct: 89 EKDAKERAKRRRENKVLADALKEKGNEAFGKGDYETAISCYSEGLEKLKDMKVLYTNRAQ 148
Query: 1294 CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCK 1473
Y KL +++ AL DC+ ++ + K Y A A+K+Y+++ + YQK L+++ +
Sbjct: 149 AYIKLGDYRKALTDCDWALKCDEKCTKAYFHMGKAHLALKNYSESRECYQKILEINPQLQ 208
Query: 1474 EAADGY 1491
GY
Sbjct: 209 TQVKGY 214
Score = 65.1 bits (157), Expect = 1e-10
Identities = 38/103 (36%), Positives = 55/103 (53%)
Frame = +1
Query: 106 LKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 285
LKEKGN+A G+ + A+ CYSE ++ VLY+NR+ AY K GDY+KA D +
Sbjct: 109 LKEKGNEAFGKGDYETAISCYSEGLEKLKDMKVLYTNRAQAYIKLGDYRKALTDCDWALK 168
Query: 286 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLK 414
K Y A L + E++ Y++ L+ NPQL+
Sbjct: 169 CDEKCTKAYFHMGKAHLALKNYSESRECYQKILE---INPQLQ 208
Score = 50.8 bits (120), Expect = 3e-06
Identities = 32/107 (29%), Positives = 49/107 (45%)
Frame = +1
Query: 748 NKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRE 927
NK A KE GNEA+ K D++TA+ Y + TN+A Y + GDY K
Sbjct: 102 NKVLADALKEKGNEAFGKGDYETAISCYSEGLEKLKDMKVLYTNRAQAYIKLGDYRKALT 161
Query: 928 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 1068
C+ A++ + KAY +G ++ + Y ++ Y K L
Sbjct: 162 DCDWALKCD-------EKCTKAYFHMGKAHLALKNYSESRECYQKIL 201
>ref|NP_001034837.1| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110
kDa subunit [Sus scrofa].
Length = 1046
Score = 80.1 bits (196), Expect = 4e-15
Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 1/258 (0%)
Frame = +1
Query: 778 LGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGR 957
LGN + + FD A+ Y RA L P + N A VY+E+G + +AIE+
Sbjct: 231 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 290
Query: 958 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY-NKSLAEHRTPDVLKKCQQAEKILKEQ 1134
+ Y +A A G+ E+ Y A+ + + + ++ ++ E+ ++
Sbjct: 291 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 350
Query: 1135 ERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 1314
+ + P+ A N + Q+G +A+ HY EAI+ +P A YSN ++ +
Sbjct: 351 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 410
Query: 1315 FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQ 1494
Q AL+ IQ+ P F ++ A+ + + +A+ Y+ AL L + +A
Sbjct: 411 VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 470
Query: 1495 RCVMAQYNRHDSPEDVKR 1548
C+ + D E +K+
Sbjct: 471 HCLQIVCDWTDYDERMKK 488
Score = 75.1 bits (183), Expect = 1e-13
Identities = 73/308 (23%), Positives = 123/308 (39%), Gaps = 10/308 (3%)
Frame = +1
Query: 775 ELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVG 954
EL + Y+ DF+ A +H + +P N + ++++F+ CR L +++
Sbjct: 26 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ------CRRL-DRSAHFS 78
Query: 955 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD----------VLKKC 1104
+ +A+AY+ +GN Y + + ++AI Y +L PD L
Sbjct: 79 TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL--RLKPDFIDGYINLAAALVAA 136
Query: 1105 QQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSN 1284
E ++ NPDL + GN G +A Y +AI+ P A +SN
Sbjct: 137 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 196
Query: 1285 RAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDA 1464
+ E LA+ E+ + L+P F+ Y L+ + + +A+ Y +AL L
Sbjct: 197 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 256
Query: 1465 NCKEAADGYQRCVMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALS 1644
N G CV + D D RRA+ E+Q D L +K A +
Sbjct: 257 N-HAVVHGNLACVYYEQGLIDLAIDTYRRAI---ELQPHFPDAYCNLANALKEKGSVAEA 312
Query: 1645 EHLKNPVI 1668
E N +
Sbjct: 313 EDCYNTAL 320
Score = 54.7 bits (130), Expect = 2e-07
Identities = 66/295 (22%), Positives = 113/295 (38%), Gaps = 4/295 (1%)
Frame = +1
Query: 778 LGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGR 957
LGN ++ A++HY A L P + N AA GD + A++
Sbjct: 95 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 154
Query: 958 EN---REDYRQIAKAYARIGNSYFKEEKYKDAIHFY-NKSLAEHRTPDVLKKCQQAEKIL 1125
+ R D + KA R+ + + Y AI N ++A V + +
Sbjct: 155 DLYCVRSDLGNLLKALGRLEEA---KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 211
Query: 1126 KEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 1305
E+ ++P+ N GN + + +A+ Y A+ +P A ++ N A Y +
Sbjct: 212 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 271
Query: 1306 LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAAD 1485
LA+ I+L+P F Y A AL+ +A D Y AL L ++ +
Sbjct: 272 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 331
Query: 1486 GYQRCVMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEH 1650
Q N ++ ++ PE S+ A +L+Q K +AL +
Sbjct: 332 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS--VLQQQGKLQEALMHY 384
>ref|XP_003358088.1| PREDICTED: dnaJ homolog subfamily C member 7 isoform 3 [Sus scrofa].
Length = 438
Score = 79.3 bits (194), Expect = 7e-15
Identities = 59/237 (24%), Positives = 107/237 (45%), Gaps = 4/237 (1%)
Frame = +1
Query: 748 NKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRE 927
N ++ +++ ++K+DF + DRA + P + +A G Y + +
Sbjct: 82 NANAVIEYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQS 141
Query: 928 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 1107
+ + + N + Y R G + E+ + A+ F+ ++L PD K C
Sbjct: 142 VASDILRMDSTNAD------ALYVR-GLCLYYEDCIEKAVQFFVQAL--RMAPDHEKAC- 191
Query: 1108 QAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKL 1275
+A N +K GN+ F++G+Y A + YTEA+ +P + AKL
Sbjct: 192 -----------IACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKL 240
Query: 1276 YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQK 1446
Y NR +KL + A++DC ++L+ T+IK Y R+A + Y +A+ Y+K
Sbjct: 241 YCNRGTVNSKLRKLDDAIEDCTHAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEK 297
Score = 61.6 bits (148), Expect = 2e-09
Identities = 79/363 (21%), Positives = 140/363 (38%), Gaps = 12/363 (3%)
Frame = +1
Query: 190 PQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRT 369
P+N Y NR+A G +++A D ++V L + +G+ R+ L A R+
Sbjct: 3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRS 62
Query: 370 YEEGLKHEANNPQLKEGLQNMEA-----RLAERKFMNP------FNMPNLYQKLESDPRT 516
++ L+ + N Q ++ +N A ++AE F F M + + R
Sbjct: 63 FQRALELDHKNAQAQQEFKNANAVIEYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRF 122
Query: 517 KALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDXXXXXXXXXXXX 696
K L A E + L P R+ +T + L V +
Sbjct: 123 KILKA-----ECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFF 177
Query: 697 XXXXXXXXXXXXXXXXXNKKQALK-EKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYM 873
+ALK +KE GN+A+K+ ++ A + Y A +DP N+
Sbjct: 178 VQALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIK-- 235
Query: 874 TNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF 1053
A +Y +G + AIE + KAY R Y E+Y++A+
Sbjct: 236 -TNAKLYCNRGTVNSKLRKLDDAIEDCTHAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRD 294
Query: 1054 YNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKH 1233
Y K +T + + + A+ LK+ +R Y + +KN + +K +A+ H
Sbjct: 295 YEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYK--ILGVDKNASEDEIKKAYRKRALMH 352
Query: 1234 YTE 1242
+ +
Sbjct: 353 HPD 355
Score = 61.6 bits (148), Expect = 2e-09
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Frame = +1
Query: 82 RTMEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQ----NHVLYSNRSAAYAKKGDY 249
R + + KE GNKA GN A + Y+EA+ +DP N LY NR +K
Sbjct: 195 RNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKL 254
Query: 250 QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 429
A ED V L + K Y R+A ++EEA R YE+ + E + K+ L+N
Sbjct: 255 DDAIEDCTHAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTE-KTKEHKQLLKN 313
Query: 430 MEARLAERKFMNPFNMPNLYQKLESDP-----RTKALLADP-----SYRELIEQLRNKPS 579
+ L + K + + + + + D R +AL+ P + E+ ++ K
Sbjct: 314 AQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFK 373
Query: 580 DLG---TKLQDPRIMT 618
++G T L DP+ T
Sbjct: 374 EVGEAFTILSDPKKKT 389
>ref|XP_003358087.1| PREDICTED: dnaJ homolog subfamily C member 7 isoform 2 [Sus scrofa].
Length = 438
Score = 79.3 bits (194), Expect = 7e-15
Identities = 59/237 (24%), Positives = 107/237 (45%), Gaps = 4/237 (1%)
Frame = +1
Query: 748 NKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRE 927
N ++ +++ ++K+DF + DRA + P + +A G Y + +
Sbjct: 82 NANAVIEYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQS 141
Query: 928 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 1107
+ + + N + Y R G + E+ + A+ F+ ++L PD K C
Sbjct: 142 VASDILRMDSTNAD------ALYVR-GLCLYYEDCIEKAVQFFVQAL--RMAPDHEKAC- 191
Query: 1108 QAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKL 1275
+A N +K GN+ F++G+Y A + YTEA+ +P + AKL
Sbjct: 192 -----------IACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKL 240
Query: 1276 YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQK 1446
Y NR +KL + A++DC ++L+ T+IK Y R+A + Y +A+ Y+K
Sbjct: 241 YCNRGTVNSKLRKLDDAIEDCTHAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEK 297
Score = 61.6 bits (148), Expect = 2e-09
Identities = 79/363 (21%), Positives = 140/363 (38%), Gaps = 12/363 (3%)
Frame = +1
Query: 190 PQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRT 369
P+N Y NR+A G +++A D ++V L + +G+ R+ L A R+
Sbjct: 3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRS 62
Query: 370 YEEGLKHEANNPQLKEGLQNMEA-----RLAERKFMNP------FNMPNLYQKLESDPRT 516
++ L+ + N Q ++ +N A ++AE F F M + + R
Sbjct: 63 FQRALELDHKNAQAQQEFKNANAVIEYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRF 122
Query: 517 KALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDXXXXXXXXXXXX 696
K L A E + L P R+ +T + L V +
Sbjct: 123 KILKA-----ECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFF 177
Query: 697 XXXXXXXXXXXXXXXXXNKKQALK-EKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYM 873
+ALK +KE GN+A+K+ ++ A + Y A +DP N+
Sbjct: 178 VQALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIK-- 235
Query: 874 TNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF 1053
A +Y +G + AIE + KAY R Y E+Y++A+
Sbjct: 236 -TNAKLYCNRGTVNSKLRKLDDAIEDCTHAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRD 294
Query: 1054 YNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKH 1233
Y K +T + + + A+ LK+ +R Y + +KN + +K +A+ H
Sbjct: 295 YEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYK--ILGVDKNASEDEIKKAYRKRALMH 352
Query: 1234 YTE 1242
+ +
Sbjct: 353 HPD 355
Score = 61.6 bits (148), Expect = 2e-09
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Frame = +1
Query: 82 RTMEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQ----NHVLYSNRSAAYAKKGDY 249
R + + KE GNKA GN A + Y+EA+ +DP N LY NR +K
Sbjct: 195 RNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKL 254
Query: 250 QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 429
A ED V L + K Y R+A ++EEA R YE+ + E + K+ L+N
Sbjct: 255 DDAIEDCTHAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTE-KTKEHKQLLKN 313
Query: 430 MEARLAERKFMNPFNMPNLYQKLESDP-----RTKALLADP-----SYRELIEQLRNKPS 579
+ L + K + + + + + D R +AL+ P + E+ ++ K
Sbjct: 314 AQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFK 373
Query: 580 DLG---TKLQDPRIMT 618
++G T L DP+ T
Sbjct: 374 EVGEAFTILSDPKKKT 389
>ref|XP_003131457.1| PREDICTED: dnaJ homolog subfamily C member 7 isoform 1 [Sus scrofa].
Length = 494
Score = 79.3 bits (194), Expect = 7e-15
Identities = 59/237 (24%), Positives = 107/237 (45%), Gaps = 4/237 (1%)
Frame = +1
Query: 748 NKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRE 927
N ++ +++ ++K+DF + DRA + P + +A G Y + +
Sbjct: 138 NANAVIEYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQS 197
Query: 928 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 1107
+ + + N + Y R G + E+ + A+ F+ ++L PD K C
Sbjct: 198 VASDILRMDSTNAD------ALYVR-GLCLYYEDCIEKAVQFFVQAL--RMAPDHEKAC- 247
Query: 1108 QAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKL 1275
+A N +K GN+ F++G+Y A + YTEA+ +P + AKL
Sbjct: 248 -----------IACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKL 296
Query: 1276 YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQK 1446
Y NR +KL + A++DC ++L+ T+IK Y R+A + Y +A+ Y+K
Sbjct: 297 YCNRGTVNSKLRKLDDAIEDCTHAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEK 353
Score = 76.3 bits (186), Expect = 6e-14
Identities = 87/395 (22%), Positives = 157/395 (39%), Gaps = 12/395 (3%)
Frame = +1
Query: 94 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGC 273
+ KE+GN + + ++A Y++AI + P+N Y NR+A G +++A D
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQ 86
Query: 274 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA----- 438
++V L + +G+ R+ L A R+++ L+ + N Q ++ +N A
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVIEYE 146
Query: 439 RLAERKFMNP------FNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTKLQ 600
++AE F F M + + R K L A E + L P
Sbjct: 147 KIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKA-----ECLAMLGRYPEAQSVASD 201
Query: 601 DPRIMTTLSVLLGVDLGSMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKKQALK-EKE 777
R+ +T + L V + +ALK +KE
Sbjct: 202 ILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKE 261
Query: 778 LGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGR 957
GN+A+K+ ++ A + Y A +DP N+ A +Y +G + AIE
Sbjct: 262 DGNKAFKEGNYKLAYELYTEALGIDPNNIK---TNAKLYCNRGTVNSKLRKLDDAIEDCT 318
Query: 958 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQE 1137
+ KAY R Y E+Y++A+ Y K +T + + + A+ LK+ +
Sbjct: 319 HAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKEHKQLLKNAQLELKKSK 378
Query: 1138 RLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTE 1242
R Y + +KN + +K +A+ H+ +
Sbjct: 379 RKDYYK--ILGVDKNASEDEIKKAYRKRALMHHPD 411
Score = 68.6 bits (166), Expect = 1e-11
Identities = 35/106 (33%), Positives = 61/106 (57%)
Frame = +1
Query: 1177 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 1356
K +GN + K DY +A +YT+AI PK+A Y NRAA L F+ AL D ++ ++L
Sbjct: 32 KEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRL 91
Query: 1357 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQ 1494
+ +F++G+ R+ ++ + A +Q+AL+LD +A ++
Sbjct: 92 DDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFK 137
Score = 61.6 bits (148), Expect = 2e-09
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Frame = +1
Query: 82 RTMEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQ----NHVLYSNRSAAYAKKGDY 249
R + + KE GNKA GN A + Y+EA+ +DP N LY NR +K
Sbjct: 251 RNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKL 310
Query: 250 QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 429
A ED V L + K Y R+A ++EEA R YE+ + E + K+ L+N
Sbjct: 311 DDAIEDCTHAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTE-KTKEHKQLLKN 369
Query: 430 MEARLAERKFMNPFNMPNLYQKLESDP-----RTKALLADP-----SYRELIEQLRNKPS 579
+ L + K + + + + + D R +AL+ P + E+ ++ K
Sbjct: 370 AQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFK 429
Query: 580 DLG---TKLQDPRIMT 618
++G T L DP+ T
Sbjct: 430 EVGEAFTILSDPKKKT 445
Score = 58.2 bits (139), Expect = 2e-08
Identities = 61/264 (23%), Positives = 109/264 (41%), Gaps = 25/264 (9%)
Frame = +1
Query: 751 KKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCREL 930
K++A KE GN Y KKD++ A +Y +A D+ P N +Y N+AA G + +
Sbjct: 25 KREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGD 84
Query: 931 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 1110
++++ + + + K + +GN+ ++ A+ +K+ + +
Sbjct: 85 AQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVIE 144
Query: 1111 AEKIL-----KEQERLAYINPDLALE-------EKNKGNECF-QKGDYPQAMKHYTEAIK 1251
EKI K R D ALE K EC G YP+A ++ ++
Sbjct: 145 YEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILR 204
Query: 1252 RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG--YTRKAAALEAMKD--- 1416
+ +A R C + A++ + +++ P K R A AL+A K+
Sbjct: 205 MDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKEDGN 264
Query: 1417 -------YTKAMDVYQKALDLDAN 1467
Y A ++Y +AL +D N
Sbjct: 265 KAFKEGNYKLAYELYTEALGIDPN 288
>ref|NP_001177088.1| mitochondrial import receptor subunit TOM34 [Sus scrofa].
Length = 309
Score = 73.2 bits (178), Expect = 5e-13
Identities = 33/95 (34%), Positives = 61/95 (64%)
Frame = +1
Query: 1177 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 1356
K +GNE +KG++ QA++ Y+E++ + ++ YSNRA C+ L +++ A+KDC E ++L
Sbjct: 197 KEEGNELVKKGNHKQAIEKYSESLWFSNMESATYSNRALCHLVLKQYKEAVKDCTEALRL 256
Query: 1357 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 1461
+ +K + R+A A +A+KDYT + L ++
Sbjct: 257 DGRNVKAFYRRAQAYKALKDYTSSFADINSLLQIE 291
Score = 59.7 bits (143), Expect = 6e-09
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Frame = +1
Query: 1156 PDLALEEKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLL 1311
P E + GN+ F+ G + +A Y+ A++ K++ L+SNRAAC+ K
Sbjct: 6 PGSVEELRAAGNQSFRNGQFAEAATLYSRALRMLQAQGSLDPEKESVLFSNRAACHLKDG 65
Query: 1312 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGY 1491
+KDC + L P +K R+A+A EA++ Y A Y L +D A +G
Sbjct: 66 NCVDCIKDCTSALALVPFSMKPLLRRASAYEALEKYPLAYVDYVTVLQIDDGVTSALEGS 125
Query: 1492 QRCVMA 1509
R A
Sbjct: 126 SRMTRA 131
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,592,482
Number of extensions: 1471424
Number of successful extensions: 6534
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 6379
Number of HSP's successfully gapped: 73
Length of query: 659
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 554
Effective length of database: 8,729,747
Effective search space: 4836279838
Effective search space used: 4836279838
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012586
(1977 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058017.1| stress-induced-phosphoprotein 1 [Mus musculus]. 999 0.0
Alignment gi|NP_082279.1| RNA polymerase II-associated protein 3 [Mus mus... 102 1e-21
Alignment gi|NP_077797.3| tetratricopeptide repeat protein 28 [Mus muscul... 89 2e-17
Alignment gi|NP_659087.1| small glutamine-rich tetratricopeptide repeat-c... 87 5e-17
Alignment gi|NP_078775.1| small glutamine-rich tetratricopeptide repeat-c... 81 3e-15
Alignment gi|NP_631883.2| UDP-N-acetylglucosamine--peptide N-acetylglucos... 80 6e-15
Alignment gi|NP_766358.1| tetratricopeptide repeat protein 12 [Mus muscul... 77 4e-14
Alignment gi|XP_001479673.1| PREDICTED: tetratricopeptide repeat protein ... 77 4e-14
Alignment gi|NP_062769.2| dnaJ homolog subfamily C member 7 [Mus musculus]. 77 5e-14
Alignment gi|NP_035285.2| serine/threonine-protein phosphatase 5 [Mus mus... 75 1e-13
>ref|NP_058017.1| stress-induced-phosphoprotein 1 [Mus musculus].
Length = 543
Score = 999 bits (2582), Expect = 0.0
Identities = 495/543 (91%), Positives = 511/543 (94%)
Frame = +1
Query: 88 MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED 267
MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED
Sbjct: 1 MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED 60
Query: 268 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA 447
GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN QLKEGLQNMEARLA
Sbjct: 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNLQLKEGLQNMEARLA 120
Query: 448 ERKFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLS 627
ERKFMNPFN+PNLYQKLE+DPRT++LL+DP+YRELIEQL+NKPSDLGTKLQDPR+MTTLS
Sbjct: 121 ERKFMNPFNLPNLYQKLENDPRTRSLLSDPTYRELIEQLQNKPSDLGTKLQDPRVMTTLS 180
Query: 628 VLLGVDLGSMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKKQALKEKELGNEAYKKKD 807
VLLGVDLGSMD NKKQALKEKELGN+AYKKKD
Sbjct: 181 VLLGVDLGSMDEEEEAATPPPPPPPKKEPKPEPMEEDLPENKKQALKEKELGNDAYKKKD 240
Query: 808 FDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIA 987
FD ALKHYDRAK+LDPTNMTY+TNQAAV+FEKGDY KCRELCEKAIEVGRENREDYRQIA
Sbjct: 241 FDKALKHYDRAKELDPTNMTYITNQAAVHFEKGDYNKCRELCEKAIEVGRENREDYRQIA 300
Query: 988 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA 1167
KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA
Sbjct: 301 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA 360
Query: 1168 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 1347
LEEKNKGNECFQKGDYPQAMKHYTEAIKRNP+DAKLYSNRAACYTKLLEFQLALKDCEEC
Sbjct: 361 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEEC 420
Query: 1348 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQRCVMAQYNRHD 1527
IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD++CKEAADGYQRC+MAQYNRHD
Sbjct: 421 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHD 480
Query: 1528 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI 1707
SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI
Sbjct: 481 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI 540
Query: 1708 AIR 1716
AIR
Sbjct: 541 AIR 543
>ref|NP_082279.1| RNA polymerase II-associated protein 3 [Mus musculus].
Length = 660
Score = 102 bits (254), Expect = 1e-21
Identities = 76/274 (27%), Positives = 121/274 (44%), Gaps = 24/274 (8%)
Frame = +1
Query: 748 NKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRE 927
+ ++AL KE GN+ +K+ +D A++ Y + D DP N TN+A+ YF +
Sbjct: 130 DSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAES 189
Query: 928 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 1107
C AI + R KAYAR G + F +K +DA Y K L PD +
Sbjct: 190 DCNLAIALS-------RTYTKAYARRGAARFALQKLEDARKDYEKVL--ELEPDNFEATN 240
Query: 1108 QAEKILKEQERLAYINP------------------------DLALEEKNKGNECFQKGDY 1215
+ KI + P A+ EK+ GN F++G Y
Sbjct: 241 ELRKINQALTSKENSGPGAAAAAESKPAAGESKPTGGQQGRQKAIAEKDLGNGFFKEGKY 300
Query: 1216 PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 1395
QA++ YT I + +A L +NRA Y K+ ++ A +DC + I L+ ++ K + R+
Sbjct: 301 EQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGT 360
Query: 1396 ALEAMKDYTKAMDVYQKALDLDANCKEAADGYQR 1497
A + +A ++ L L+ K+AA R
Sbjct: 361 ARTFLGKINEAKQDFETVLLLEPGNKQAATELSR 394
Score = 79.3 bits (194), Expect = 1e-14
Identities = 71/277 (25%), Positives = 126/277 (45%), Gaps = 13/277 (4%)
Frame = +1
Query: 775 ELGNEAYKKKDFDTALKHYDR---AKDLDPTNMTYMTNQAAVYFEKGDY------GKCRE 927
++ + A + +DF L+H+++ KDL+ + + G++ GK +E
Sbjct: 13 QVKHNAEELQDFMRDLEHWEKDMKEKDLELRRQGGVAEENLPPIRNGNFRKKKKKGKAKE 72
Query: 928 LCEKAIEVGRENR---EDYRQIAKAYA-RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 1095
K E +NR DY AK RI + KE+ D++ ++S D +
Sbjct: 73 SSRKTKEENTKNRIKSYDYDAWAKLDVDRILDELDKEDSTHDSLSQESES-----DEDGI 127
Query: 1096 KKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL 1275
+ Q +LKE KGN+ F++G Y +A++ YT+ + +P + L
Sbjct: 128 RVDSQKALVLKE-----------------KGNKYFKQGKYDEAIECYTKGMDADPYNPVL 170
Query: 1276 YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 1455
+NRA+ Y +L +F +A DC I L T+ K Y R+ AA A++ A Y+K L+
Sbjct: 171 PTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLE 230
Query: 1456 LDANCKEAADGYQRCVMAQYNRHDSPEDVKRRAMADP 1566
L+ + EA + ++ A ++ +S A + P
Sbjct: 231 LEPDNFEATNELRKINQALTSKENSGPGAAAAAESKP 267
Score = 76.3 bits (186), Expect = 8e-14
Identities = 40/121 (33%), Positives = 67/121 (55%)
Frame = +1
Query: 106 LKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 285
LKEKGNK G D+A++CY++ + DP N VL +NR++AY + + A D +
Sbjct: 137 LKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIA 196
Query: 286 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFMN 465
L + K Y+R+ AA L + E+A++ YE+ L+ E +N + L+ + L ++
Sbjct: 197 LSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQALTSKENSG 256
Query: 466 P 468
P
Sbjct: 257 P 257
Score = 67.8 bits (164), Expect = 3e-11
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Frame = +1
Query: 109 KEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 288
K+ GN G + A++CY+ I D N +L +NR+ AY K Y++A D + + L
Sbjct: 288 KDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVL 347
Query: 289 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAER----- 453
+ K ++R+ A FL + EAK+ +E L E N Q L ++ L E+
Sbjct: 348 DGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKELIEKGHWDD 407
Query: 454 KFMNPFNMPNLYQKLESDPR 513
F++ ++ + +++ PR
Sbjct: 408 VFLDSTQRHHVVKAVDNPPR 427
>ref|NP_077797.3| tetratricopeptide repeat protein 28 [Mus musculus].
Length = 2481
Score = 88.6 bits (218), Expect = 2e-17
Identities = 49/145 (33%), Positives = 71/145 (48%)
Frame = +1
Query: 76 PGRTMEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQK 255
P + + E + N+A G+ A+ Y+EA+ +DPQN +LYSNRSAAY K Y K
Sbjct: 45 PALSKAEFVEKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKTQQYHK 104
Query: 256 AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 435
A +D K L P W K Y R+ AL++L R +A + GL + + QL G+
Sbjct: 105 ALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAA 164
Query: 436 ARLAERKFMNPFNMPNLYQKLESDP 510
+ R + P KL+ P
Sbjct: 165 MKSPMRDTLEPTYQQLQKMKLDKSP 189
Score = 57.0 bits (136), Expect = 5e-08
Identities = 32/113 (28%), Positives = 54/113 (47%)
Frame = +1
Query: 1168 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 1347
+E+ + N+ GD+ A+ Y EA+ +P++ LYSNR+A Y K ++ AL D +
Sbjct: 53 VEKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAIKA 112
Query: 1348 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQRCVM 1506
L P + K Y R+ AL+ + + A+ + L D + G M
Sbjct: 113 RLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAM 165
>ref|NP_659087.1| small glutamine-rich tetratricopeptide repeat-containing protein
beta [Mus musculus].
Length = 304
Score = 87.0 bits (214), Expect = 5e-17
Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 6/169 (3%)
Frame = +1
Query: 67 NGVPGRTMEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGD 246
N VP + + ++LK++GN + N A+ CY++AI+LDP N V Y NR+AA +K
Sbjct: 76 NSVP-EDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSH 134
Query: 247 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 426
Y A +D K + + + K Y R AL +N+FEEA +Y++ L + N K L+
Sbjct: 135 YTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLK 194
Query: 427 NMEARLAERKFMNP------FNMPNLYQKLESDPRTKALLADPSYRELI 555
E +L R+ +P F+M +L +L+ +P ++L+
Sbjct: 195 IAEQKL--REVSSPTGTGLSFDMASLINNPAFITMAASLMQNPQVQQLM 241
Score = 80.5 bits (197), Expect = 4e-15
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Frame = +1
Query: 1177 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 1356
K++GN ++ +Y A+ YT+AI+ +P +A Y NRAA +KL + A+KDCE+ I +
Sbjct: 89 KDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAI 148
Query: 1357 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-------ANCKEAADGYQRCV---- 1503
+ + K Y R AL AM + +A+ YQKALDLD +N K A +
Sbjct: 149 DSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTG 208
Query: 1504 ------MAQYNRHDSPEDVKRRAMADPEVQQIMS 1587
MA + + + M +P+VQQ+MS
Sbjct: 209 TGLSFDMASLINNPAFITMAASLMQNPQVQQLMS 242
Score = 54.3 bits (129), Expect = 3e-07
Identities = 31/99 (31%), Positives = 52/99 (52%)
Frame = +1
Query: 772 KELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEV 951
K+ GN K++++ A+ Y +A +LDP N Y N+AA + Y + CEKAI +
Sbjct: 89 KDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAI 148
Query: 952 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 1068
+ +KAY R+G + K+++A+ Y K+L
Sbjct: 149 D-------SKYSKAYGRMGLALTAMNKFEEAVTSYQKAL 180
>ref|NP_078775.1| small glutamine-rich tetratricopeptide repeat-containing protein
alpha [Mus musculus].
Length = 315
Score = 80.9 bits (198), Expect = 3e-15
Identities = 41/119 (34%), Positives = 67/119 (56%)
Frame = +1
Query: 94 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGC 273
+ LK +GN+ + N + A+ Y +AI+L+P N V + NR+AAY+K G+Y A +D
Sbjct: 91 EAERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCE 150
Query: 274 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAE 450
+ + + P + K Y R AL LN+ EA Y++ L+ + +N K L+ E +L E
Sbjct: 151 RAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDNDTYKSNLKIAELKLRE 209
Score = 72.8 bits (177), Expect = 9e-13
Identities = 36/95 (37%), Positives = 59/95 (62%)
Frame = +1
Query: 1177 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 1356
K +GNE + ++ A+ Y +AI+ NP +A + NRAA Y+KL + A++DCE I +
Sbjct: 96 KTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIGI 155
Query: 1357 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 1461
+P + K Y R AL ++ + +A+ Y+KAL+LD
Sbjct: 156 DPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELD 190
Score = 60.1 bits (144), Expect = 6e-09
Identities = 34/104 (32%), Positives = 57/104 (54%)
Frame = +1
Query: 757 QALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCE 936
+A + K GNE K ++F+ A+ Y +A +L+P N Y N+AA Y + G+Y + CE
Sbjct: 91 EAERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCE 150
Query: 937 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 1068
+AI + +KAY R+G + K+ +A+ +Y K+L
Sbjct: 151 RAIGID-------PGYSKAYGRMGLALSSLNKHAEAVAYYKKAL 187
>ref|NP_631883.2| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110
kDa subunit [Mus musculus].
Length = 1046
Score = 80.1 bits (196), Expect = 6e-15
Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 1/258 (0%)
Frame = +1
Query: 778 LGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGR 957
LGN + + FD A+ Y RA L P + N A VY+E+G + +AIE+
Sbjct: 231 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 290
Query: 958 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY-NKSLAEHRTPDVLKKCQQAEKILKEQ 1134
+ Y +A A G+ E+ Y A+ + + + ++ ++ E+ ++
Sbjct: 291 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 350
Query: 1135 ERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 1314
+ + P+ A N + Q+G +A+ HY EAI+ +P A YSN ++ +
Sbjct: 351 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 410
Query: 1315 FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQ 1494
Q AL+ IQ+ P F ++ A+ + + +A+ Y+ AL L + +A
Sbjct: 411 VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 470
Query: 1495 RCVMAQYNRHDSPEDVKR 1548
C+ + D E +K+
Sbjct: 471 HCLQIVCDWTDYDERMKK 488
Score = 75.1 bits (183), Expect = 2e-13
Identities = 73/308 (23%), Positives = 123/308 (39%), Gaps = 10/308 (3%)
Frame = +1
Query: 775 ELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVG 954
EL + Y+ DF+ A +H + +P N + ++++F+ CR L +++
Sbjct: 26 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ------CRRL-DRSAHFS 78
Query: 955 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD----------VLKKC 1104
+ +A+AY+ +GN Y + + ++AI Y +L PD L
Sbjct: 79 TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL--RLKPDFIDGYINLAAALVAA 136
Query: 1105 QQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSN 1284
E ++ NPDL + GN G +A Y +AI+ P A +SN
Sbjct: 137 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 196
Query: 1285 RAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDA 1464
+ E LA+ E+ + L+P F+ Y L+ + + +A+ Y +AL L
Sbjct: 197 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 256
Query: 1465 NCKEAADGYQRCVMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALS 1644
N G CV + D D RRA+ E+Q D L +K A +
Sbjct: 257 N-HAVVHGNLACVYYEQGLIDLAIDTYRRAI---ELQPHFPDAYCNLANALKEKGSVAEA 312
Query: 1645 EHLKNPVI 1668
E N +
Sbjct: 313 EDCYNTAL 320
Score = 54.7 bits (130), Expect = 3e-07
Identities = 66/295 (22%), Positives = 113/295 (38%), Gaps = 4/295 (1%)
Frame = +1
Query: 778 LGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGR 957
LGN ++ A++HY A L P + N AA GD + A++
Sbjct: 95 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 154
Query: 958 EN---REDYRQIAKAYARIGNSYFKEEKYKDAIHFY-NKSLAEHRTPDVLKKCQQAEKIL 1125
+ R D + KA R+ + + Y AI N ++A V + +
Sbjct: 155 DLYCVRSDLGNLLKALGRLEEA---KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 211
Query: 1126 KEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 1305
E+ ++P+ N GN + + +A+ Y A+ +P A ++ N A Y +
Sbjct: 212 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 271
Query: 1306 LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAAD 1485
LA+ I+L+P F Y A AL+ +A D Y AL L ++ +
Sbjct: 272 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 331
Query: 1486 GYQRCVMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEH 1650
Q N ++ ++ PE S+ A +L+Q K +AL +
Sbjct: 332 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS--VLQQQGKLQEALMHY 384
>ref|NP_766358.1| tetratricopeptide repeat protein 12 [Mus musculus].
Length = 704
Score = 77.4 bits (189), Expect = 4e-14
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 7/182 (3%)
Frame = +1
Query: 1069 AEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAI 1248
A+ +PD EK KE+ + N LA K KGNE F +GDY A+ Y+E +
Sbjct: 75 ADEMSPDAF--LASVEKDAKERAKRRRENRVLADALKEKGNEAFVRGDYETAIFFYSEGL 132
Query: 1249 KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA 1428
+ LY+NRA + KL ++Q AL DC+ ++ + K Y A A+K+Y+KA
Sbjct: 133 GKLKDMKVLYTNRAQAFIKLGDYQKALVDCDWALKCDENCTKAYFHMGKAHVALKNYSKA 192
Query: 1429 MDVYQKALDLDANCKEAADGY-------QRCVMAQYNRHDSPEDVKRRAMADPEVQQIMS 1587
+ YQK +++ K + ++ + + +S + K A+ + + +S
Sbjct: 193 KECYQKIEEINPKLKAQVKEHLNQVTLREKADLQEKEAQESLDSGKNTAVTTKNLLETLS 252
Query: 1588 DP 1593
P
Sbjct: 253 KP 254
Score = 60.8 bits (146), Expect = 4e-09
Identities = 39/103 (37%), Positives = 53/103 (51%)
Frame = +1
Query: 106 LKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 285
LKEKGN+A G+ + A+ YSE + VLY+NR+ A+ K GDYQKA D +
Sbjct: 108 LKEKGNEAFVRGDYETAIFFYSEGLGKLKDMKVLYTNRAQAFIKLGDYQKALVDCDWALK 167
Query: 286 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLK 414
+ K Y A L + +AK Y+ K E NP+LK
Sbjct: 168 CDENCTKAYFHMGKAHVALKNYSKAKECYQ---KIEEINPKLK 207
>ref|XP_001479673.1| PREDICTED: tetratricopeptide repeat protein 12-like [Mus musculus].
Length = 544
Score = 77.4 bits (189), Expect = 4e-14
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 7/182 (3%)
Frame = +1
Query: 1069 AEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAI 1248
A+ +PD EK KE+ + N LA K KGNE F +GDY A+ Y+E +
Sbjct: 75 ADEMSPDAF--LASVEKDAKERAKRRRENRVLADALKEKGNEAFVRGDYETAIFFYSEGL 132
Query: 1249 KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA 1428
+ LY+NRA + KL ++Q AL DC+ ++ + K Y A A+K+Y+KA
Sbjct: 133 GKLKDMKVLYTNRAQAFIKLGDYQKALVDCDWALKCDENCTKAYFHMGKAHVALKNYSKA 192
Query: 1429 MDVYQKALDLDANCKEAADGY-------QRCVMAQYNRHDSPEDVKRRAMADPEVQQIMS 1587
+ YQK +++ K + ++ + + +S + K A+ + + +S
Sbjct: 193 KECYQKIEEINPKLKAQVKEHLNQVTLREKADLQEKEAQESLDSGKNTAVTTKNLLETLS 252
Query: 1588 DP 1593
P
Sbjct: 253 KP 254
Score = 60.8 bits (146), Expect = 4e-09
Identities = 39/103 (37%), Positives = 53/103 (51%)
Frame = +1
Query: 106 LKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 285
LKEKGN+A G+ + A+ YSE + VLY+NR+ A+ K GDYQKA D +
Sbjct: 108 LKEKGNEAFVRGDYETAIFFYSEGLGKLKDMKVLYTNRAQAFIKLGDYQKALVDCDWALK 167
Query: 286 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLK 414
+ K Y A L + +AK Y+ K E NP+LK
Sbjct: 168 CDENCTKAYFHMGKAHVALKNYSKAKECYQ---KIEEINPKLK 207
>ref|NP_062769.2| dnaJ homolog subfamily C member 7 [Mus musculus].
Length = 494
Score = 77.0 bits (188), Expect = 5e-14
Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 11/243 (4%)
Frame = +1
Query: 748 NKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRE 927
N ++ +++ ++K+DF + DRA + P + +A G Y + +
Sbjct: 138 NANAVMEYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQF 197
Query: 928 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 1107
+ + + N + Y R G + E+ + A+ F+ ++L PD K C
Sbjct: 198 VASDILRMDSTNAD------ALYVR-GLCLYYEDCIEKAVQFFVQAL--RMAPDHEKAC- 247
Query: 1108 QAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKL 1275
+A N +K GN+ F++G+Y A + YTEA+ +P + AKL
Sbjct: 248 -----------VACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKL 296
Query: 1276 YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL-------EAMKDYTKAMD 1434
Y NR +KL + + A++DC ++L+ T+IK Y R+A EA++DY K
Sbjct: 297 YCNRGTVNSKLRQLEDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQFEEAVRDYEK--- 353
Query: 1435 VYQ 1443
VYQ
Sbjct: 354 VYQ 356
Score = 66.6 bits (161), Expect = 7e-11
Identities = 34/106 (32%), Positives = 60/106 (56%)
Frame = +1
Query: 1177 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 1356
K +GN + K DY +A +YT+AI P +A Y NRAA L F+ AL D ++ ++L
Sbjct: 32 KEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGDAQQSVRL 91
Query: 1357 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQ 1494
+ +F++G+ R+ ++ + A +Q+AL+LD +A ++
Sbjct: 92 DDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFK 137
Score = 64.3 bits (155), Expect = 3e-10
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 17/196 (8%)
Frame = +1
Query: 82 RTMEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQN----HVLYSNRSAAYAKKGDY 249
R + + KE GNKA GN A + Y+EA+ +DP N LY NR +K
Sbjct: 251 RNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRQL 310
Query: 250 QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 429
+ A ED V L + K Y R+A +FEEA R YE+ + E + K+ L+N
Sbjct: 311 EDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQFEEAVRDYEKVYQTE-KTKEHKQLLKN 369
Query: 430 MEARLAERKFMNPFNMPNLYQKLESDP-----RTKALLADP-----SYRELIEQLRNKPS 579
+ L + K + + + + + D R +AL+ P + E+ ++ K
Sbjct: 370 AQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFK 429
Query: 580 DLG---TKLQDPRIMT 618
++G T L DP+ T
Sbjct: 430 EVGEAFTILSDPKKKT 445
Score = 58.9 bits (141), Expect = 1e-08
Identities = 61/264 (23%), Positives = 109/264 (41%), Gaps = 25/264 (9%)
Frame = +1
Query: 751 KKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCREL 930
K++A KE GN Y KKD++ A +Y +A D+ P N +Y N+AA G + +
Sbjct: 25 KREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGD 84
Query: 931 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 1110
++++ + + + K + +GN+ ++ A+ +K+ + +
Sbjct: 85 AQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVME 144
Query: 1111 AEKIL-----KEQERLAYINPDLALE-------EKNKGNECF-QKGDYPQAMKHYTEAIK 1251
EKI K R D ALE K EC G YP+A ++ ++
Sbjct: 145 YEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILR 204
Query: 1252 RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT--RKAAALEAMKD--- 1416
+ +A R C + A++ + +++ P K R A AL+A K+
Sbjct: 205 MDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACVACRNAKALKAKKEDGN 264
Query: 1417 -------YTKAMDVYQKALDLDAN 1467
Y A ++Y +AL +D N
Sbjct: 265 KAFKEGNYKLAYELYTEALGIDPN 288
Score = 53.9 bits (128), Expect = 4e-07
Identities = 41/165 (24%), Positives = 73/165 (44%)
Frame = +1
Query: 748 NKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRE 927
N K +KE GN+A+K+ ++ A + Y A +DP N+ A +Y +G
Sbjct: 252 NAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIK---TNAKLYCNRGTVNSKLR 308
Query: 928 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 1107
E AIE + KAY R Y E++++A+ Y K +T + + +
Sbjct: 309 QLEDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQFEEAVRDYEKVYQTEKTKEHKQLLK 368
Query: 1108 QAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTE 1242
A+ LK+ +R Y + +KN + +K +A+ H+ +
Sbjct: 369 NAQLELKKSKRKDYYK--ILGVDKNASEDEIKKAYRKRALMHHPD 411
Score = 50.8 bits (120), Expect = 4e-06
Identities = 30/121 (24%), Positives = 58/121 (47%)
Frame = +1
Query: 94 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGC 273
+ KE+GN + + ++A Y++AI + P N Y NR+A G +++A D
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGDAQ 86
Query: 274 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAER 453
++V L + +G+ R+ L A R+++ L+ + N Q ++ +N A +
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYE 146
Query: 454 K 456
K
Sbjct: 147 K 147
>ref|NP_035285.2| serine/threonine-protein phosphatase 5 [Mus musculus].
Length = 499
Score = 75.5 bits (184), Expect = 1e-13
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 5/184 (2%)
Frame = +1
Query: 85 TMEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYE 264
T+++ ELK + N A + ++A++ YS+AI+L+P N + Y NRS AY + Y A
Sbjct: 24 TLKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPGNAIYYGNRSLAYLRTECYGYALG 83
Query: 265 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARL 444
D + ++L + KGY R+AA+ L +F A R YE +K + N+ K Q +
Sbjct: 84 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSKIV 143
Query: 445 AERKFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDL-----GTKLQDPR 609
++ F +A+ D R +++ L + + G KL+D +
Sbjct: 144 KQKAF------------------ERAIAGDEHRRSVVDSLDIESMTIEDEYSGPKLEDGK 185
Query: 610 IMTT 621
+ T
Sbjct: 186 VTIT 189
Score = 75.1 bits (183), Expect = 2e-13
Identities = 40/112 (35%), Positives = 63/112 (56%)
Frame = +1
Query: 1165 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 1344
A E K + N+ F+ DY A+K Y++AI+ NP +A Y NR+ Y + + AL D
Sbjct: 28 AEELKTQANDYFKAKDYENAIKFYSQAIELNPGNAIYYGNRSLAYLRTECYGYALGDATR 87
Query: 1345 CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQRC 1500
I+L+ +IKGY R+AA+ A+ + A+ Y+ + + N K+A YQ C
Sbjct: 88 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQEC 139
Score = 52.0 bits (123), Expect = 2e-06
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 1/128 (0%)
Frame = +1
Query: 754 KQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELC 933
K+A + K N+ +K KD++ A+K Y +A +L+P N Y N++ Y YG
Sbjct: 26 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPGNAIYYGNRSLAYLRTECYGYALGDA 85
Query: 934 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL-AEHRTPDVLKKCQQ 1110
+AIE+ ++ + Y + A + +G K++ A+ Y + + D K Q+
Sbjct: 86 TRAIELDKKYIKGYYRRAASNMALG-------KFRAALRDYETVVKVKPNDKDAKMKYQE 138
Query: 1111 AEKILKEQ 1134
KI+K++
Sbjct: 139 CSKIVKQK 146
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 66,600,419
Number of extensions: 1916435
Number of successful extensions: 8097
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 7930
Number of HSP's successfully gapped: 71
Length of query: 659
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 551
Effective length of database: 12,373,671
Effective search space: 6817892721
Effective search space used: 6817892721
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012586
(1977 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006810.1| stress-induced-phosphoprotein 1 [Homo sapiens]. 1007 0.0
Alignment gi|NP_001139547.1| RNA polymerase II-associated protein 3 isofo... 103 8e-22
Alignment gi|NP_078880.2| RNA polymerase II-associated protein 3 isoform ... 103 8e-22
Alignment gi|NP_003105.2| sperm-associated antigen 1 [Homo sapiens]. 92 1e-18
Alignment gi|NP_757367.1| sperm-associated antigen 1 [Homo sapiens]. 92 1e-18
Alignment gi|NP_061945.1| small glutamine-rich tetratricopeptide repeat-c... 90 7e-18
Alignment gi|NP_001138890.1| tetratricopeptide repeat protein 28 [Homo sa... 87 6e-17
Alignment gi|NP_001139548.1| RNA polymerase II-associated protein 3 isofo... 85 3e-16
Alignment gi|NP_858059.1| UDP-N-acetylglucosamine--peptide N-acetylglucos... 80 7e-15
Alignment gi|NP_858058.1| UDP-N-acetylglucosamine--peptide N-acetylglucos... 80 7e-15
>ref|NP_006810.1| stress-induced-phosphoprotein 1 [Homo sapiens].
Length = 543
Score = 1007 bits (2604), Expect = 0.0
Identities = 500/543 (92%), Positives = 510/543 (93%)
Frame = +1
Query: 88 MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYED 267
MEQVNELKEKGNKALS GNIDDALQCYSEAIKLDP NHVLYSNRSAAYAKKGDYQKAYED
Sbjct: 1 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60
Query: 268 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA 447
GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA
Sbjct: 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA 120
Query: 448 ERKFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLS 627
ERKFMNPFNMPNLYQKLESDPRT+ LL+DP+YRELIEQLRNKPSDLGTKLQDPRIMTTLS
Sbjct: 121 ERKFMNPFNMPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLS 180
Query: 628 VLLGVDLGSMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKKQALKEKELGNEAYKKKD 807
VLLGVDLGSMD NKKQALKEKELGN+AYKKKD
Sbjct: 181 VLLGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKD 240
Query: 808 FDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIA 987
FDTALKHYD+AK+LDPTNMTY+TNQAAVYFEKGDY KCRELCEKAIEVGRENREDYRQIA
Sbjct: 241 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 300
Query: 988 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA 1167
KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA
Sbjct: 301 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA 360
Query: 1168 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 1347
LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC
Sbjct: 361 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 420
Query: 1348 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQRCVMAQYNRHD 1527
IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD++CKEAADGYQRC+MAQYNRHD
Sbjct: 421 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHD 480
Query: 1528 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI 1707
SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI
Sbjct: 481 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI 540
Query: 1708 AIR 1716
AIR
Sbjct: 541 AIR 543
>ref|NP_001139547.1| RNA polymerase II-associated protein 3 isoform 2 [Homo sapiens].
Length = 631
Score = 103 bits (256), Expect = 8e-22
Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 21/265 (7%)
Frame = +1
Query: 748 NKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRE 927
+ ++AL KE GN+ +K+ +D A+ Y + D DP N TN+A+ YF +
Sbjct: 129 DSQKALVLKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAES 188
Query: 928 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA----EHRTPDVL 1095
C A+ + R KAY+R G + F +K ++A Y + L + L
Sbjct: 189 DCNLAVALNRS-------YTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNEL 241
Query: 1096 KKCQQA------------EKILK--EQERL---AYINPDLALEEKNKGNECFQKGDYPQA 1224
+K QA + ++K E ER A N A+ EK++GN F++G Y +A
Sbjct: 242 RKISQALASKENSYPKEADIVIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEGKYERA 301
Query: 1225 MKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 1404
++ YT I + +A L +NRA Y K+ +++ A KDC + I L+ ++ K + R+ A
Sbjct: 302 IECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTART 361
Query: 1405 AMKDYTKAMDVYQKALDLDANCKEA 1479
+ +A ++ L L+ K+A
Sbjct: 362 FLGKLNEAKQDFETVLLLEPGNKQA 386
Score = 84.0 bits (206), Expect = 5e-16
Identities = 69/262 (26%), Positives = 128/262 (48%), Gaps = 20/262 (7%)
Frame = +1
Query: 922 RELCEKAIEVGREN-----------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYN--- 1059
+++ +K +E+ R+N ++R+ K A+ + +EE K+ I Y+
Sbjct: 33 KDIKQKDMELRRQNGVPEENLPPIRNGNFRKKKKGKAKESSKKTREENTKNRIKSYDYEA 92
Query: 1060 -KSLAEHRTPDVLKKCQQAEKILKEQ----ERLAYINPDLALEEKNKGNECFQKGDYPQA 1224
L R D L K + L ++ E +++ AL K KGN+ F++G Y +A
Sbjct: 93 WAKLDVDRILDELDKDDSTHESLSQESESEEDGIHVDSQKALVLKEKGNKYFKQGKYDEA 152
Query: 1225 MKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 1404
+ YT+ + +P + L +NRA+ Y +L +F +A DC + L ++ K Y+R+ AA
Sbjct: 153 IDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARF 212
Query: 1405 AMKDYTKAMDVYQKALDLDANCKEAADGYQRCVMAQYNRHDS-PEDVKRRAMADPEVQQI 1581
A++ +A Y++ L+L+ N EA + ++ A ++ +S P++ AD ++
Sbjct: 213 ALQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENSYPKE------ADIVIK-- 264
Query: 1582 MSDPAMRLILEQMQKDPQALSE 1647
S R +E Q QA+SE
Sbjct: 265 -STEGERKQIEAQQNKQQAISE 285
Score = 83.2 bits (204), Expect = 8e-16
Identities = 57/163 (34%), Positives = 83/163 (50%)
Frame = +1
Query: 106 LKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 285
LKEKGNK G D+A+ CY++ + DP N VL +NR++AY + + A D V
Sbjct: 136 LKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVA 195
Query: 286 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFMN 465
L + K YSR+ AA L + EEAK+ YE L+ E NN + L+ + LA ++
Sbjct: 196 LNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKE--- 252
Query: 466 PFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTK 594
N Y K E+D K+ + R+ IE +NK + K
Sbjct: 253 -----NSYPK-EADIVIKSTEGE---RKQIEAQQNKQQAISEK 286
Score = 66.2 bits (160), Expect = 1e-10
Identities = 40/144 (27%), Positives = 70/144 (48%)
Frame = +1
Query: 91 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDG 270
+Q K++GN G + A++CY+ I D N +L +NR+ AY K Y++A +D
Sbjct: 280 QQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDC 339
Query: 271 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAE 450
+ + L + K ++R+ A FL + EAK+ +E L E N Q L ++ + +
Sbjct: 340 TQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKKPLK 399
Query: 451 RKFMNPFNMPNLYQKLESDPRTKA 522
+ + NL Q ++ T A
Sbjct: 400 KVIIE--ETGNLIQTIDVPDSTTA 421
>ref|NP_078880.2| RNA polymerase II-associated protein 3 isoform 1 [Homo sapiens].
Length = 665
Score = 103 bits (256), Expect = 8e-22
Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 21/265 (7%)
Frame = +1
Query: 748 NKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRE 927
+ ++AL KE GN+ +K+ +D A+ Y + D DP N TN+A+ YF +
Sbjct: 129 DSQKALVLKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAES 188
Query: 928 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA----EHRTPDVL 1095
C A+ + R KAY+R G + F +K ++A Y + L + L
Sbjct: 189 DCNLAVALNRS-------YTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNEL 241
Query: 1096 KKCQQA------------EKILK--EQERL---AYINPDLALEEKNKGNECFQKGDYPQA 1224
+K QA + ++K E ER A N A+ EK++GN F++G Y +A
Sbjct: 242 RKISQALASKENSYPKEADIVIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEGKYERA 301
Query: 1225 MKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 1404
++ YT I + +A L +NRA Y K+ +++ A KDC + I L+ ++ K + R+ A
Sbjct: 302 IECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTART 361
Query: 1405 AMKDYTKAMDVYQKALDLDANCKEA 1479
+ +A ++ L L+ K+A
Sbjct: 362 FLGKLNEAKQDFETVLLLEPGNKQA 386
Score = 84.0 bits (206), Expect = 5e-16
Identities = 69/262 (26%), Positives = 128/262 (48%), Gaps = 20/262 (7%)
Frame = +1
Query: 922 RELCEKAIEVGREN-----------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYN--- 1059
+++ +K +E+ R+N ++R+ K A+ + +EE K+ I Y+
Sbjct: 33 KDIKQKDMELRRQNGVPEENLPPIRNGNFRKKKKGKAKESSKKTREENTKNRIKSYDYEA 92
Query: 1060 -KSLAEHRTPDVLKKCQQAEKILKEQ----ERLAYINPDLALEEKNKGNECFQKGDYPQA 1224
L R D L K + L ++ E +++ AL K KGN+ F++G Y +A
Sbjct: 93 WAKLDVDRILDELDKDDSTHESLSQESESEEDGIHVDSQKALVLKEKGNKYFKQGKYDEA 152
Query: 1225 MKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 1404
+ YT+ + +P + L +NRA+ Y +L +F +A DC + L ++ K Y+R+ AA
Sbjct: 153 IDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARF 212
Query: 1405 AMKDYTKAMDVYQKALDLDANCKEAADGYQRCVMAQYNRHDS-PEDVKRRAMADPEVQQI 1581
A++ +A Y++ L+L+ N EA + ++ A ++ +S P++ AD ++
Sbjct: 213 ALQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENSYPKE------ADIVIK-- 264
Query: 1582 MSDPAMRLILEQMQKDPQALSE 1647
S R +E Q QA+SE
Sbjct: 265 -STEGERKQIEAQQNKQQAISE 285
Score = 83.2 bits (204), Expect = 8e-16
Identities = 57/163 (34%), Positives = 83/163 (50%)
Frame = +1
Query: 106 LKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 285
LKEKGNK G D+A+ CY++ + DP N VL +NR++AY + + A D V
Sbjct: 136 LKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVA 195
Query: 286 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFMN 465
L + K YSR+ AA L + EEAK+ YE L+ E NN + L+ + LA ++
Sbjct: 196 LNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKE--- 252
Query: 466 PFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTK 594
N Y K E+D K+ + R+ IE +NK + K
Sbjct: 253 -----NSYPK-EADIVIKSTEGE---RKQIEAQQNKQQAISEK 286
Score = 70.9 bits (172), Expect = 4e-12
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
Frame = +1
Query: 91 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDG 270
+Q K++GN G + A++CY+ I D N +L +NR+ AY K Y++A +D
Sbjct: 280 QQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDC 339
Query: 271 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAE 450
+ + L + K ++R+ A FL + EAK+ +E L E N Q L ++ L E
Sbjct: 340 TQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKELIE 399
Query: 451 R-----KFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRN 570
+ F++ N+ + +++ P + P + +IE+ N
Sbjct: 400 KGHWDDVFLDSTQRQNVVKPIDNPPHPGS--TKPLKKVIIEETGN 442
>ref|NP_003105.2| sperm-associated antigen 1 [Homo sapiens].
Length = 926
Score = 92.4 bits (228), Expect = 1e-18
Identities = 117/555 (21%), Positives = 208/555 (37%), Gaps = 98/555 (17%)
Frame = +1
Query: 109 KEKGNKALSAGNIDDALQCYSEAI---------------------------------KLD 189
KEKGN+A ++G+ ++A+ Y+ +I +L+
Sbjct: 213 KEKGNEAFNSGDYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQNWNSAFQDCEKVLELE 272
Query: 190 PQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRT 369
P N R+ Y + ++A ED K +D++PD + L E A T
Sbjct: 273 PGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEAASET 332
Query: 370 Y-------------------EEGLKHEANNPQLKEGLQNMEARLAERKFMNPFNMPNLYQ 492
+ G KHE K AR A+ P M N+ +
Sbjct: 333 QTKGKRMVIQEIENSEDEEGKSGRKHEDGGGDKKPAEPAGAARAAQ-----PCVMGNIQK 387
Query: 493 KL--ESDPRTKALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDXX 666
KL +++ + P R + + G + PR + + G G
Sbjct: 388 KLTGKAEGGKRPARGAPQ--------RGQTPEAGADKRSPRRASAAAAAGGGATGH---- 435
Query: 667 XXXXXXXXXXXXXXXXXXXXXXXXXXXNKKQALKEKELGNEAYKKKDFDTALKHYDRAKD 846
+ K GNE ++ F A Y A
Sbjct: 436 ----------------------PGGGQGAENPAGLKSQGNELFRSGQFAEAAGKYSAAIA 473
Query: 847 L---------DPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIAKAYA 999
L D ++ Y +N+AA Y ++G+ C + C +A+E+ + + + A AY
Sbjct: 474 LLEPAGSEIADDLSILY-SNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYE 532
Query: 1000 RI---GNSYFKEEKY----------KDAIHFYNKSLAEHRTPDVLKKCQQ---------- 1110
+ G +Y + D+++ ++ L E P+ +K
Sbjct: 533 TLEQYGKAYVDYKTVLQIDCGLQLANDSVNRLSRILMELDGPNWREKLSPIPAVPASVPL 592
Query: 1111 -----AEKILKEQ------ERLAYINPDLALEE-KNKGNECFQKGDYPQAMKHYTEAIKR 1254
A++++ +Q R I + + K +GN+C +Y A+ Y+E +K
Sbjct: 593 QAWHPAKEMISKQAGDSSSHRQQGITDEKTFKALKEEGNQCVNDKNYKDALSKYSECLKI 652
Query: 1255 NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMD 1434
N K+ +Y+NRA CY KL +F+ A +DC++ +QL +K + R+A A + +K+Y K++
Sbjct: 653 NNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAFYRRALAHKGLKNYQKSLI 712
Query: 1435 VYQKALDLDANCKEA 1479
K + LD + EA
Sbjct: 713 DLNKVILLDPSIIEA 727
Score = 70.9 bits (172), Expect = 4e-12
Identities = 37/100 (37%), Positives = 54/100 (54%)
Frame = +1
Query: 1162 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 1341
LA EK KGNE F GDY +A+ +YT +I P Y+NRA KL + A +DCE
Sbjct: 208 LATREKEKGNEAFNSGDYEEAVMYYTRSISALPT-VVAYNNRAQAEIKLQNWNSAFQDCE 266
Query: 1342 ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 1461
+ ++LEP +K R+A + +A + K LD++
Sbjct: 267 KVLELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVE 306
Score = 65.1 bits (157), Expect = 2e-10
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Frame = +1
Query: 1177 KNKGNECFQKGDYPQAMKHYTEAIKR-NPKDAK-------LYSNRAACYTKLLEFQLALK 1332
K++GNE F+ G + +A Y+ AI P ++ LYSNRAACY K ++
Sbjct: 449 KSQGNELFRSGQFAEAAGKYSAAIALLEPAGSEIADDLSILYSNRAACYLKEGNCSGCIQ 508
Query: 1333 DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQR 1497
DC ++L P +K R+A A E ++ Y KA Y+ L +D + A D R
Sbjct: 509 DCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVDYKTVLQIDCGLQLANDSVNR 563
Score = 64.3 bits (155), Expect = 4e-10
Identities = 79/386 (20%), Positives = 152/386 (39%), Gaps = 14/386 (3%)
Frame = +1
Query: 79 GRTMEQVNELKEKGNKALSAGNIDDALQCYSEAIKL-DPQNH-------VLYSNRSAAYA 234
G+ E LK +GN+ +G +A YS AI L +P +LYSNR+A Y
Sbjct: 439 GQGAENPAGLKSQGNELFRSGQFAEAAGKYSAAIALLEPAGSEIADDLSILYSNRAACYL 498
Query: 235 KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLK 414
K+G+ +D + ++L P K R+A A E L ++ +A Y+ L+ +
Sbjct: 499 KEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVDYKTVLQIDCGLQLAN 558
Query: 415 EGLQNMEARLAERKFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTK 594
+ + + L E + PN +KL P A + ++ E + + D +
Sbjct: 559 DSVNRLSRILME------LDGPNWREKLSPIPAVPASVPLQAWHPAKEMISKQAGDSSSH 612
Query: 595 LQDPRIMTTLSVLLGVDLGSMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKKQALKEK 774
Q G D +ALKE+
Sbjct: 613 RQQ---------------GITDEKTF----------------------------KALKEE 629
Query: 775 ELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVG 954
GN+ K++ AL Y ++ TN+A Y + + + ++ C++A+++
Sbjct: 630 --GNQCVNDKNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLA 687
Query: 955 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK-SLAEHRTPDVLKKCQQAEKILKE 1131
N + + + A A+ + N Y+ ++ NK L + + + ++ ++L
Sbjct: 688 DGNVKAFYRRALAHKGLKN-------YQKSLIDLNKVILLDPSIIEAKMELEEVTRLLNL 740
Query: 1132 QERLAYINPD-----LALEEKNKGNE 1194
+++ A N + + ++E N+G E
Sbjct: 741 KDKTAPFNKEKERRKIEIQEVNEGKE 766
Score = 51.6 bits (122), Expect = 3e-06
Identities = 43/143 (30%), Positives = 66/143 (46%)
Frame = +1
Query: 760 ALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEK 939
A +EKE GNEA+ D++ A+ +Y R+ PT + Y N+A + ++ + CEK
Sbjct: 209 ATREKEKGNEAFNSGDYEEAVMYYTRSISALPTVVAY-NNRAQAEIKLQNWNSAFQDCEK 267
Query: 940 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 1119
+E+ N KA R +Y + K ++A +K L DV A+K
Sbjct: 268 VLELEPGN-------VKALLRRATTYKHQNKLREATEDLSKVL------DVEPDNDLAKK 314
Query: 1120 ILKEQERLAYINPDLALEEKNKG 1188
L E ER N + A E + KG
Sbjct: 315 TLSEVER-DLKNSEAASETQTKG 336
>ref|NP_757367.1| sperm-associated antigen 1 [Homo sapiens].
Length = 926
Score = 92.4 bits (228), Expect = 1e-18
Identities = 117/555 (21%), Positives = 208/555 (37%), Gaps = 98/555 (17%)
Frame = +1
Query: 109 KEKGNKALSAGNIDDALQCYSEAI---------------------------------KLD 189
KEKGN+A ++G+ ++A+ Y+ +I +L+
Sbjct: 213 KEKGNEAFNSGDYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQNWNSAFQDCEKVLELE 272
Query: 190 PQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRT 369
P N R+ Y + ++A ED K +D++PD + L E A T
Sbjct: 273 PGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEAASET 332
Query: 370 Y-------------------EEGLKHEANNPQLKEGLQNMEARLAERKFMNPFNMPNLYQ 492
+ G KHE K AR A+ P M N+ +
Sbjct: 333 QTKGKRMVIQEIENSEDEEGKSGRKHEDGGGDKKPAEPAGAARAAQ-----PCVMGNIQK 387
Query: 493 KL--ESDPRTKALLADPSYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDXX 666
KL +++ + P R + + G + PR + + G G
Sbjct: 388 KLTGKAEGGKRPARGAPQ--------RGQTPEAGADKRSPRRASAAAAAGGGATGH---- 435
Query: 667 XXXXXXXXXXXXXXXXXXXXXXXXXXXNKKQALKEKELGNEAYKKKDFDTALKHYDRAKD 846
+ K GNE ++ F A Y A
Sbjct: 436 ----------------------PGGGQGAENPAGLKSQGNELFRSGQFAEAAGKYSAAIA 473
Query: 847 L---------DPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIAKAYA 999
L D ++ Y +N+AA Y ++G+ C + C +A+E+ + + + A AY
Sbjct: 474 LLEPAGSEIADDLSILY-SNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYE 532
Query: 1000 RI---GNSYFKEEKY----------KDAIHFYNKSLAEHRTPDVLKKCQQ---------- 1110
+ G +Y + D+++ ++ L E P+ +K
Sbjct: 533 TLEQYGKAYVDYKTVLQIDCGLQLANDSVNRLSRILMELDGPNWREKLSPIPAVPASVPL 592
Query: 1111 -----AEKILKEQ------ERLAYINPDLALEE-KNKGNECFQKGDYPQAMKHYTEAIKR 1254
A++++ +Q R I + + K +GN+C +Y A+ Y+E +K
Sbjct: 593 QAWHPAKEMISKQAGDSSSHRQQGITDEKTFKALKEEGNQCVNDKNYKDALSKYSECLKI 652
Query: 1255 NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMD 1434
N K+ +Y+NRA CY KL +F+ A +DC++ +QL +K + R+A A + +K+Y K++
Sbjct: 653 NNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAFYRRALAHKGLKNYQKSLI 712
Query: 1435 VYQKALDLDANCKEA 1479
K + LD + EA
Sbjct: 713 DLNKVILLDPSIIEA 727
Score = 70.9 bits (172), Expect = 4e-12
Identities = 37/100 (37%), Positives = 54/100 (54%)
Frame = +1
Query: 1162 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 1341
LA EK KGNE F GDY +A+ +YT +I P Y+NRA KL + A +DCE
Sbjct: 208 LATREKEKGNEAFNSGDYEEAVMYYTRSISALPT-VVAYNNRAQAEIKLQNWNSAFQDCE 266
Query: 1342 ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 1461
+ ++LEP +K R+A + +A + K LD++
Sbjct: 267 KVLELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVE 306
Score = 65.1 bits (157), Expect = 2e-10
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Frame = +1
Query: 1177 KNKGNECFQKGDYPQAMKHYTEAIKR-NPKDAK-------LYSNRAACYTKLLEFQLALK 1332
K++GNE F+ G + +A Y+ AI P ++ LYSNRAACY K ++
Sbjct: 449 KSQGNELFRSGQFAEAAGKYSAAIALLEPAGSEIADDLSILYSNRAACYLKEGNCSGCIQ 508
Query: 1333 DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQR 1497
DC ++L P +K R+A A E ++ Y KA Y+ L +D + A D R
Sbjct: 509 DCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVDYKTVLQIDCGLQLANDSVNR 563
Score = 64.3 bits (155), Expect = 4e-10
Identities = 79/386 (20%), Positives = 152/386 (39%), Gaps = 14/386 (3%)
Frame = +1
Query: 79 GRTMEQVNELKEKGNKALSAGNIDDALQCYSEAIKL-DPQNH-------VLYSNRSAAYA 234
G+ E LK +GN+ +G +A YS AI L +P +LYSNR+A Y
Sbjct: 439 GQGAENPAGLKSQGNELFRSGQFAEAAGKYSAAIALLEPAGSEIADDLSILYSNRAACYL 498
Query: 235 KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLK 414
K+G+ +D + ++L P K R+A A E L ++ +A Y+ L+ +
Sbjct: 499 KEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVDYKTVLQIDCGLQLAN 558
Query: 415 EGLQNMEARLAERKFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRNKPSDLGTK 594
+ + + L E + PN +KL P A + ++ E + + D +
Sbjct: 559 DSVNRLSRILME------LDGPNWREKLSPIPAVPASVPLQAWHPAKEMISKQAGDSSSH 612
Query: 595 LQDPRIMTTLSVLLGVDLGSMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKKQALKEK 774
Q G D +ALKE+
Sbjct: 613 RQQ---------------GITDEKTF----------------------------KALKEE 629
Query: 775 ELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVG 954
GN+ K++ AL Y ++ TN+A Y + + + ++ C++A+++
Sbjct: 630 --GNQCVNDKNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLA 687
Query: 955 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK-SLAEHRTPDVLKKCQQAEKILKE 1131
N + + + A A+ + N Y+ ++ NK L + + + ++ ++L
Sbjct: 688 DGNVKAFYRRALAHKGLKN-------YQKSLIDLNKVILLDPSIIEAKMELEEVTRLLNL 740
Query: 1132 QERLAYINPD-----LALEEKNKGNE 1194
+++ A N + + ++E N+G E
Sbjct: 741 KDKTAPFNKEKERRKIEIQEVNEGKE 766
Score = 51.6 bits (122), Expect = 3e-06
Identities = 43/143 (30%), Positives = 66/143 (46%)
Frame = +1
Query: 760 ALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEK 939
A +EKE GNEA+ D++ A+ +Y R+ PT + Y N+A + ++ + CEK
Sbjct: 209 ATREKEKGNEAFNSGDYEEAVMYYTRSISALPTVVAY-NNRAQAEIKLQNWNSAFQDCEK 267
Query: 940 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 1119
+E+ N KA R +Y + K ++A +K L DV A+K
Sbjct: 268 VLELEPGN-------VKALLRRATTYKHQNKLREATEDLSKVL------DVEPDNDLAKK 314
Query: 1120 ILKEQERLAYINPDLALEEKNKG 1188
L E ER N + A E + KG
Sbjct: 315 TLSEVER-DLKNSEAASETQTKG 336
>ref|NP_061945.1| small glutamine-rich tetratricopeptide repeat-containing protein
beta [Homo sapiens].
Length = 304
Score = 90.1 bits (222), Expect = 7e-18
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 6/169 (3%)
Frame = +1
Query: 67 NGVPGRTMEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGD 246
N VP + + ++LK++GN + N A+ CY++AI+LDP N V Y NR+AA +K G
Sbjct: 76 NSVP-EDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGH 134
Query: 247 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 426
Y A +D K + + + K Y R AL LN+FEEA +Y++ L + N K L+
Sbjct: 135 YTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLK 194
Query: 427 NMEARLAERKFMNP------FNMPNLYQKLESDPRTKALLADPSYRELI 555
E +L R+ +P F+M +L +L+ +P ++L+
Sbjct: 195 IAEQKL--REVSSPTGTGLSFDMASLINNPAFISMAASLMQNPQVQQLM 241
Score = 79.0 bits (193), Expect = 2e-14
Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Frame = +1
Query: 1177 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 1356
K++GN ++ +Y A+ YT+AI+ +P +A Y NRAA +KL + A+KDCE+ I +
Sbjct: 89 KDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAI 148
Query: 1357 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-------ANCKEAADGYQRCV---- 1503
+ + K Y R AL A+ + +A+ YQKALDLD +N K A +
Sbjct: 149 DSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTG 208
Query: 1504 ------MAQYNRHDSPEDVKRRAMADPEVQQIMS 1587
MA + + + M +P+VQQ+MS
Sbjct: 209 TGLSFDMASLINNPAFISMAASLMQNPQVQQLMS 242
Score = 56.2 bits (134), Expect = 1e-07
Identities = 32/99 (32%), Positives = 53/99 (53%)
Frame = +1
Query: 772 KELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEV 951
K+ GN K++++ A+ Y +A +LDP N Y N+AA + G Y + CEKAI +
Sbjct: 89 KDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAI 148
Query: 952 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 1068
+ +KAY R+G + K+++A+ Y K+L
Sbjct: 149 D-------SKYSKAYGRMGLALTALNKFEEAVTSYQKAL 180
>ref|NP_001138890.1| tetratricopeptide repeat protein 28 [Homo sapiens].
Length = 2481
Score = 87.0 bits (214), Expect = 6e-17
Identities = 48/136 (35%), Positives = 68/136 (50%)
Frame = +1
Query: 103 ELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 282
E + N+A G+ A+ Y+EA+ +DPQN +LYSNRSAAY K Y KA +D K
Sbjct: 60 EKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKAR 119
Query: 283 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFM 462
L P W K Y R+ AL++L R +A + GL + + QL G+ + R +
Sbjct: 120 LLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSL 179
Query: 463 NPFNMPNLYQKLESDP 510
P KL+ P
Sbjct: 180 EPTYQQLQKMKLDKSP 195
Score = 58.2 bits (139), Expect = 3e-08
Identities = 32/113 (28%), Positives = 55/113 (48%)
Frame = +1
Query: 1168 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 1347
+E+ + N+ GD+ A+ Y EA+ +P++ LYSNR+A Y K+ ++ AL D +
Sbjct: 59 VEKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKA 118
Query: 1348 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQRCVM 1506
L P + K Y R+ AL+ + + A+ + L D + G M
Sbjct: 119 RLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAM 171
>ref|NP_001139548.1| RNA polymerase II-associated protein 3 isoform 3 [Homo sapiens].
Length = 506
Score = 84.7 bits (208), Expect = 3e-16
Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 21/233 (9%)
Frame = +1
Query: 844 DLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK 1023
D DP N TN+A+ YF + C A+ + R KAY+R G + F
Sbjct: 2 DADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRS-------YTKAYSRRGAARFA 54
Query: 1024 EEKYKDAIHFYNKSLA----EHRTPDVLKKCQQA------------EKILK--EQERL-- 1143
+K ++A Y + L + L+K QA + ++K E ER
Sbjct: 55 LQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENSYPKEADIVIKSTEGERKQI 114
Query: 1144 -AYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQ 1320
A N A+ EK++GN F++G Y +A++ YT I + +A L +NRA Y K+ +++
Sbjct: 115 EAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYE 174
Query: 1321 LALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEA 1479
A KDC + I L+ ++ K + R+ A + +A ++ L L+ K+A
Sbjct: 175 EAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQA 227
Score = 70.9 bits (172), Expect = 4e-12
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
Frame = +1
Query: 91 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDG 270
+Q K++GN G + A++CY+ I D N +L +NR+ AY K Y++A +D
Sbjct: 121 QQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDC 180
Query: 271 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAE 450
+ + L + K ++R+ A FL + EAK+ +E L E N Q L ++ L E
Sbjct: 181 TQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKELIE 240
Query: 451 R-----KFMNPFNMPNLYQKLESDPRTKALLADPSYRELIEQLRN 570
+ F++ N+ + +++ P + P + +IE+ N
Sbjct: 241 KGHWDDVFLDSTQRQNVVKPIDNPPHPGS--TKPLKKVIIEETGN 283
Score = 56.6 bits (135), Expect = 8e-08
Identities = 45/136 (33%), Positives = 66/136 (48%)
Frame = +1
Query: 187 DPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR 366
DP N VL +NR++AY + + A D V L + K YSR+ AA L + EEAK+
Sbjct: 4 DPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKK 63
Query: 367 TYEEGLKHEANNPQLKEGLQNMEARLAERKFMNPFNMPNLYQKLESDPRTKALLADPSYR 546
YE L+ E NN + L+ + LA ++ N Y K E+D K+ + R
Sbjct: 64 DYERVLELEPNNFEATNELRKISQALASKE--------NSYPK-EADIVIKSTEGE---R 111
Query: 547 ELIEQLRNKPSDLGTK 594
+ IE +NK + K
Sbjct: 112 KQIEAQQNKQQAISEK 127
Score = 53.5 bits (127), Expect = 7e-07
Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Frame = +1
Query: 1255 NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMD 1434
+P + L +NRA+ Y +L +F +A DC + L ++ K Y+R+ AA A++ +A
Sbjct: 4 DPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKK 63
Query: 1435 VYQKALDLDANCKEAADGYQRCVMAQYNRHDS-PEDVKRRAMADPEVQQIMSDPAMRLIL 1611
Y++ L+L+ N EA + ++ A ++ +S P++ AD ++ S R +
Sbjct: 64 DYERVLELEPNNFEATNELRKISQALASKENSYPKE------ADIVIK---STEGERKQI 114
Query: 1612 EQMQKDPQALSE 1647
E Q QA+SE
Sbjct: 115 EAQQNKQQAISE 126
>ref|NP_858059.1| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110
kDa subunit isoform 2 [Homo sapiens].
Length = 1036
Score = 80.1 bits (196), Expect = 7e-15
Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 1/258 (0%)
Frame = +1
Query: 778 LGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGR 957
LGN + + FD A+ Y RA L P + N A VY+E+G + +AIE+
Sbjct: 221 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 280
Query: 958 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY-NKSLAEHRTPDVLKKCQQAEKILKEQ 1134
+ Y +A A G+ E+ Y A+ + + + ++ ++ E+ ++
Sbjct: 281 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 340
Query: 1135 ERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 1314
+ + P+ A N + Q+G +A+ HY EAI+ +P A YSN ++ +
Sbjct: 341 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 400
Query: 1315 FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQ 1494
Q AL+ IQ+ P F ++ A+ + + +A+ Y+ AL L + +A
Sbjct: 401 VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 460
Query: 1495 RCVMAQYNRHDSPEDVKR 1548
C+ + D E +K+
Sbjct: 461 HCLQIVCDWTDYDERMKK 478
Score = 75.1 bits (183), Expect = 2e-13
Identities = 73/308 (23%), Positives = 123/308 (39%), Gaps = 10/308 (3%)
Frame = +1
Query: 775 ELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVG 954
EL + Y+ DF+ A +H + +P N + ++++F+ CR L +++
Sbjct: 16 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ------CRRL-DRSAHFS 68
Query: 955 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD----------VLKKC 1104
+ +A+AY+ +GN Y + + ++AI Y +L PD L
Sbjct: 69 TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL--RLKPDFIDGYINLAAALVAA 126
Query: 1105 QQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSN 1284
E ++ NPDL + GN G +A Y +AI+ P A +SN
Sbjct: 127 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 186
Query: 1285 RAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDA 1464
+ E LA+ E+ + L+P F+ Y L+ + + +A+ Y +AL L
Sbjct: 187 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 246
Query: 1465 NCKEAADGYQRCVMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALS 1644
N G CV + D D RRA+ E+Q D L +K A +
Sbjct: 247 N-HAVVHGNLACVYYEQGLIDLAIDTYRRAI---ELQPHFPDAYCNLANALKEKGSVAEA 302
Query: 1645 EHLKNPVI 1668
E N +
Sbjct: 303 EDCYNTAL 310
Score = 54.7 bits (130), Expect = 3e-07
Identities = 66/295 (22%), Positives = 113/295 (38%), Gaps = 4/295 (1%)
Frame = +1
Query: 778 LGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGR 957
LGN ++ A++HY A L P + N AA GD + A++
Sbjct: 85 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 144
Query: 958 EN---REDYRQIAKAYARIGNSYFKEEKYKDAIHFY-NKSLAEHRTPDVLKKCQQAEKIL 1125
+ R D + KA R+ + + Y AI N ++A V + +
Sbjct: 145 DLYCVRSDLGNLLKALGRLEEA---KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 201
Query: 1126 KEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 1305
E+ ++P+ N GN + + +A+ Y A+ +P A ++ N A Y +
Sbjct: 202 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 261
Query: 1306 LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAAD 1485
LA+ I+L+P F Y A AL+ +A D Y AL L ++ +
Sbjct: 262 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 321
Query: 1486 GYQRCVMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEH 1650
Q N ++ ++ PE S+ A +L+Q K +AL +
Sbjct: 322 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS--VLQQQGKLQEALMHY 374
>ref|NP_858058.1| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110
kDa subunit isoform 1 [Homo sapiens].
Length = 1046
Score = 80.1 bits (196), Expect = 7e-15
Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 1/258 (0%)
Frame = +1
Query: 778 LGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGR 957
LGN + + FD A+ Y RA L P + N A VY+E+G + +AIE+
Sbjct: 231 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 290
Query: 958 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY-NKSLAEHRTPDVLKKCQQAEKILKEQ 1134
+ Y +A A G+ E+ Y A+ + + + ++ ++ E+ ++
Sbjct: 291 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 350
Query: 1135 ERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 1314
+ + P+ A N + Q+G +A+ HY EAI+ +P A YSN ++ +
Sbjct: 351 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 410
Query: 1315 FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQ 1494
Q AL+ IQ+ P F ++ A+ + + +A+ Y+ AL L + +A
Sbjct: 411 VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 470
Query: 1495 RCVMAQYNRHDSPEDVKR 1548
C+ + D E +K+
Sbjct: 471 HCLQIVCDWTDYDERMKK 488
Score = 75.1 bits (183), Expect = 2e-13
Identities = 73/308 (23%), Positives = 123/308 (39%), Gaps = 10/308 (3%)
Frame = +1
Query: 775 ELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVG 954
EL + Y+ DF+ A +H + +P N + ++++F+ CR L +++
Sbjct: 26 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ------CRRL-DRSAHFS 78
Query: 955 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD----------VLKKC 1104
+ +A+AY+ +GN Y + + ++AI Y +L PD L
Sbjct: 79 TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL--RLKPDFIDGYINLAAALVAA 136
Query: 1105 QQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSN 1284
E ++ NPDL + GN G +A Y +AI+ P A +SN
Sbjct: 137 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 196
Query: 1285 RAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDA 1464
+ E LA+ E+ + L+P F+ Y L+ + + +A+ Y +AL L
Sbjct: 197 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 256
Query: 1465 NCKEAADGYQRCVMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALS 1644
N G CV + D D RRA+ E+Q D L +K A +
Sbjct: 257 N-HAVVHGNLACVYYEQGLIDLAIDTYRRAI---ELQPHFPDAYCNLANALKEKGSVAEA 312
Query: 1645 EHLKNPVI 1668
E N +
Sbjct: 313 EDCYNTAL 320
Score = 54.7 bits (130), Expect = 3e-07
Identities = 66/295 (22%), Positives = 113/295 (38%), Gaps = 4/295 (1%)
Frame = +1
Query: 778 LGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGR 957
LGN ++ A++HY A L P + N AA GD + A++
Sbjct: 95 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 154
Query: 958 EN---REDYRQIAKAYARIGNSYFKEEKYKDAIHFY-NKSLAEHRTPDVLKKCQQAEKIL 1125
+ R D + KA R+ + + Y AI N ++A V + +
Sbjct: 155 DLYCVRSDLGNLLKALGRLEEA---KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 211
Query: 1126 KEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 1305
E+ ++P+ N GN + + +A+ Y A+ +P A ++ N A Y +
Sbjct: 212 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 271
Query: 1306 LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAAD 1485
LA+ I+L+P F Y A AL+ +A D Y AL L ++ +
Sbjct: 272 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 331
Query: 1486 GYQRCVMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEH 1650
Q N ++ ++ PE S+ A +L+Q K +AL +
Sbjct: 332 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS--VLQQQGKLQEALMHY 384
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 78,728,586
Number of extensions: 2302051
Number of successful extensions: 9873
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 9645
Number of HSP's successfully gapped: 108
Length of query: 659
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 550
Effective length of database: 14,704,088
Effective search space: 8087248400
Effective search space used: 8087248400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012586
(1977 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 505 e-140
Sscrofa_Chr07 240 2e-60
Sscrofa_Chr18 139 7e-30
>Sscrofa_Chr02
|| Length = 162569375
Score = 505 bits (255), Expect = e-140
Identities = 316/333 (94%), Gaps = 3/333 (0%)
Strand = Plus / Minus
Query: 1647 acacctaaagaatcctgtaatagcgcagaagatccagaagctgatggacgtgggtctgat 1706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6978995 acacctaaagaatcctgtaatagcgcagaagatccagaagctgatggacgtgggtctgat 6978936
Query: 1707 cgcaattcggtgatgacatgttcgtcatcccccttccct-cgtcctcctgtggaaagagg 1765
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6978935 cgcaattcggtgatgacgtgttcgtcatcccccttcccttcgtcctcctgtggaaagagg 6978876
Query: 1766 agctgggacggcggcacgcacaacgaaccaaaagggaaaggaggggaaaacagcgaaaca 1825
|||||||||||||||||||| ||| | || |||||| ||||||||||| |||||| |
Sbjct: 6978875 agctgggacggcggcacgcagcacggagcagaagggagaggaggggaaacaagcgaacaa 6978816
Query: 1826 ctgctatatatttatacagacccctgtggacgatgcaaagacttacactccgttactcgt 1885
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6978815 ctgctatatatttatacagacccctgtggacgatgcagagacttacactccgttactcgt 6978756
Query: 1886 gcagccgctgcctctgggccctcccgncacacgcatggtctcttctgctgcccctcgag- 1944
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 6978755 gcagccgctgcctctgggccctcccggcacacgcatggtctcttctgctg-ccctcgagt 6978697
Query: 1945 tccatgtctncttcccctgcccccagtcgctgt 1977
||||||||| |||||||||||||||||||||||
Sbjct: 6978696 tccatgtctccttcccctgcccccagtcgctgt 6978664
Score = 424 bits (214), Expect = e-116
Identities = 214/214 (100%)
Strand = Plus / Minus
Query: 94 caggtaaatgagctaaaagagaagggcaacaaggccctgagtgccggcaacatcgacgac 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6988869 caggtaaatgagctaaaagagaagggcaacaaggccctgagtgccggcaacatcgacgac 6988810
Query: 154 gcgttacagtgctactctgaagccattaagttagacccccagaaccatgtgctctacagc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6988809 gcgttacagtgctactctgaagccattaagttagacccccagaaccatgtgctctacagc 6988750
Query: 214 aatcgctccgcagcctatgccaagaaaggagactatcagaaggcttacgaggatggctgc 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6988749 aatcgctccgcagcctatgccaagaaaggagactatcagaaggcttacgaggatggctgc 6988690
Query: 274 aaaaccgtcgacctaaagcctgactggggcaagg 307
||||||||||||||||||||||||||||||||||
Sbjct: 6988689 aaaaccgtcgacctaaagcctgactggggcaagg 6988656
Score = 339 bits (171), Expect = 4e-90
Identities = 174/175 (99%)
Strand = Plus / Minus
Query: 1472 aggaggccgccgacggttaccagcgctgcgtgatggcccagtacaaccgacacgacagcc 1531
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 6979612 aggaggccgccgacggttaccagcgctgcgtgatggcccagtacaaccggcacgacagcc 6979553
Query: 1532 cggaagatgtgaagcggcgggccatggccgaccctgaggtgcagcagatcatgagtgacc 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6979552 cggaagatgtgaagcggcgggccatggccgaccctgaggtgcagcagatcatgagtgacc 6979493
Query: 1592 cagccatgcggctcatcctggaacagatgcagaaggaccctcaggcgctcagcga 1646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6979492 cagccatgcggctcatcctggaacagatgcagaaggaccctcaggcgctcagcga 6979438
Score = 337 bits (170), Expect = 1e-89
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 591 gaaactgcaagatcctcggatcatgactactctgagcgtcctccttggagtcgacctggg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6986796 gaaactgcaagatcctcggatcatgactactctgagcgtcctccttggagtcgacctggg 6986737
Query: 651 cagcatggatgaggaggaggaagttgcaacacctccaccgccacctcctcccaaaaagga 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6986736 cagcatggatgaggaggaggaagttgcaacacctccaccgccacctcctcccaaaaagga 6986677
Query: 711 gcccaagccagagcccatggaagaagatcttccagagaataagaagcagg 760
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6986676 gcccaagccagagcccatggaagaagatcttccagagaataagaagcagg 6986627
Score = 289 bits (146), Expect = 3e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 446 cagagaggaagttcatgaatcctttcaacatgccgaatctgtaccagaagttggagagcg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6987421 cagagaggaagttcatgaatcctttcaacatgccgaatctgtaccagaagttggagagcg 6987362
Query: 506 atcccaggacaaaggctctgctcgccgatccttcctaccgggaactgatagagcagctgc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6987361 atcccaggacaaaggctctgctcgccgatccttcctaccgggaactgatagagcagctgc 6987302
Query: 566 gaaacaagccgtcggacctgggcacg 591
||||||||||||||||||||||||||
Sbjct: 6987301 gaaacaagccgtcggacctgggcacg 6987276
Score = 287 bits (145), Expect = 1e-74
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 304 aagggctattcccgaaaagcagcggctcttgagttcttaaaccgatttgaagaagccaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6987716 aagggctattcccgaaaagcagcggctcttgagttcttaaaccgatttgaagaagccaag 6987657
Query: 364 cgaacgtatgaggaaggtttaaaacatgaagcaaacaaccctcagctcaaagaaggtttg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6987656 cgaacgtatgaggaaggtttaaaacatgaagcaaacaaccctcagctcaaagaaggtttg 6987597
Query: 424 cagaatatggaggcccgattggcag 448
|||||||||||||||||||||||||
Sbjct: 6987596 cagaatatggaggcccgattggcag 6987572
Score = 256 bits (129), Expect = 4e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 758 aggccctgaaagagaaggagctggggaacgaagcctataagaagaaggactttgacacgg 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6985270 aggccctgaaagagaaggagctggggaacgaagcctataagaagaaggactttgacacgg 6985211
Query: 818 ccttgaaacactacgaccgagccaaggacctggaccccaccaacatgacttacatgacca 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6985210 ccttgaaacactacgaccgagccaaggacctggaccccaccaacatgacttacatgacca 6985151
Query: 878 accaagcag 886
|||||||||
Sbjct: 6985150 accaagcag 6985142
Score = 254 bits (128), Expect = 2e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 1206 aggggattatccccaggccatgaagcattatacagaagccatcaaacggaacccaaaaga 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6982475 aggggattatccccaggccatgaagcattatacagaagccatcaaacggaacccaaaaga 6982416
Query: 1266 tgccaaattatacagcaatcgagctgcctgctacaccaaactcttggagttccaactggc 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6982415 tgccaaattatacagcaatcgagctgcctgctacaccaaactcttggagttccaactggc 6982356
Query: 1326 gctcaagg 1333
||||||||
Sbjct: 6982355 gctcaagg 6982348
Score = 242 bits (122), Expect = 6e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 990 agcttatgctcgaattggcaactcctacttcaaagaagaaaagtacaaggatgccatcca 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6984698 agcttatgctcgaattggcaactcctacttcaaagaagaaaagtacaaggatgccatcca 6984639
Query: 1050 tttctacaataagtctctggcagagcaccgaactccagatgtgcttaagaagtgccaaca 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6984638 tttctacaataagtctctggcagagcaccgaactccagatgtgcttaagaagtgccaaca 6984579
Query: 1110 gg 1111
||
Sbjct: 6984578 gg 6984577
Score = 212 bits (107), Expect = 5e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 883 gcagccgtgtacttcgaaaagggcgactacggtaaatgccgggagctctgtgagaaggcc 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6985058 gcagccgtgtacttcgaaaagggcgactacggtaaatgccgggagctctgtgagaaggcc 6984999
Query: 943 atcgaggtgggacgagagaaccgagaggactaccgccagattgccaa 989
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6984998 atcgaggtgggacgagagaaccgagaggactaccgccagattgccaa 6984952
Score = 208 bits (105), Expect = 9e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 1370 tcaagggctatacccggaaagcagctgccctggaagccatgaaagactacacgaaagcca 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6979910 tcaagggctatacccggaaagcagctgccctggaagccatgaaagactacacgaaagcca 6979851
Query: 1430 tggacgtctaccagaaggcgctcgacctggatgccaactgtaagg 1474
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6979850 tggacgtctaccagaaggcgctcgacctggatgccaactgtaagg 6979806
Score = 198 bits (100), Expect = 8e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 1109 aggcagagaaaatcctaaaggagcaagagcgactggcctacataaaccctgacctggcct 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6982707 aggcagagaaaatcctaaaggagcaagagcgactggcctacataaaccctgacctggcct 6982648
Query: 1169 tggaggagaagaacaaaggcaatgaatgttttcagaaagg 1208
||||||||||||||||||||||||||||||||||||||||
Sbjct: 6982647 tggaggagaagaacaaaggcaatgaatgttttcagaaagg 6982608
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 1 cagcttctagtaggttccagaaggcggcgcgtgcggttgggaacgcggagcagacggagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7040349 cagcttctagtaggttccagaaggcggcgcgtgcggttgggaacgcggagcagacggagt 7040290
Query: 61 ctattcaacggggttccgggccggactatggagcaggt 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 7040289 ctattcaacggggttccgggccggactatggagcaggt 7040252
Score = 77.8 bits (39), Expect = 2e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 1331 aggactgtgaggagtgcatccagctagaacctaccttca 1369
|||||||||||||||||||||||||||||||||||||||
Sbjct: 6980160 aggactgtgaggagtgcatccagctagaacctaccttca 6980122
>Sscrofa_Chr07
|| Length = 134764511
Score = 240 bits (121), Expect = 2e-60
Identities = 341/413 (82%), Gaps = 11/413 (2%)
Strand = Plus / Minus
Query: 392 aagcaaacaaccctcagctcaaagaaggtttgcagaatatggaggcccgattggcagaga 451
|||||||||| |||||||||||||| |||| ||||||||||||| | || |||||||
Sbjct: 63000606 aagcaaacaatcctcagctcaaagatagtttatggaatatggaggcctggtttgcagaga 63000547
Query: 452 ggaagttcatgaatcctttcaacatgccgaatctgtaccagaagttggagagcgatccca 511
|||| |||||||| ||||||| |||||||| ||||||||||||| ||||||| || ||||
Sbjct: 63000546 ggaaattcatgaagcctttcatcatgccgagtctgtaccagaagctggagagtgacccca 63000487
Query: 512 ggacaaaggctctgctcgccgatccttcctaccggg-aactgatagagcagctgcgaaac 570
|||||||| |||||| |||||| ||||| ||| |||||| |||||| ||| |||||
Sbjct: 63000486 ggacaaagatgtggctcgctgatcctacctactgggaaactgacagagcaactgtgaaac 63000427
Query: 571 aagccgtcggacctgggcacgaaactgcaagatcctcggatcatgactactctgagcgtc 630
||||| | ||||||||||| |||||||||| |||| | ||||| ||| ||| | || |||
Sbjct: 63000426 aagccattggacctgggcatgaaactgcaaaatcc-ctgatcaggacaactttcagtgtc 63000368
Query: 631 ctccttggagtcgacctgggcagcatggatgaggaggaggaagttgcaacacctccaccg 690
||||| ||||| || ||| |||||||||| |||| ||||||| ||||||
Sbjct: 63000367 ctcctcggagt---------gagtatgaatgaggaggaagaaggtgcaacatctccacta 63000317
Query: 691 ccacctcctcccaaaaaggagcccaagccagagcccatggaagaagatcttccagagaat 750
||||||||||||||| ||||| |||||||||||| ||||||||||||||| |||| |||
Sbjct: 63000316 ccacctcctcccaaagaggagaccaagccagagctaatggaagaagatcttacagaaaat 63000257
Query: 751 aagaagcaggccctgaaagagaaggagctggggaacgaagcctataagaagaa 803
||||||||||| |||||||| || || ||| ||| || |||||||| |||||
Sbjct: 63000256 aagaagcaggcactgaaagaaaaagaattggagaatgatgcctataaaaagaa 63000204
Score = 67.9 bits (34), Expect = 2e-08
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 289 aagcctgactggggcaagggctattcccgaaaagcagcggctcttgagttcttaaacc 346
|||||||||||||||||||||||||| ||| ||| | |||||||||||||||||||
Sbjct: 63001389 aagcctgactggggcaagggctattcatgaagagcggaagctcttgagttcttaaacc 63001332
Score = 61.9 bits (31), Expect = 1e-06
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 1348 atccagctagaacctaccttcatcaagggctatacccggaaagcagctgccctggaagcc 1407
||||||||||| | |||||||||||||| ||||| | ||||||||||||| || ||
Sbjct: 62999651 atccagctagatcagaccttcatcaagggttatacattggaagcagctgccctagatgca 62999592
Query: 1408 atgaaagactacacgaaagccatggacgtctaccagaaggcgctcgacctg 1458
|| |||||||| || ||| ||||| | ||| |||||||||| || ||||||
Sbjct: 62999591 attaaagactatacaaaaaccatgaatgtccaccagaaggccctagacctg 62999541
>Sscrofa_Chr18
|| Length = 61220071
Score = 139 bits (70), Expect = 7e-30
Identities = 249/306 (81%), Gaps = 7/306 (2%)
Strand = Plus / Plus
Query: 1096 aagaagtgccaacaggcagagaaaatcctaaaggagcaagagcgactggcctacataaac 1155
||||| ||| || |||||||||||||||| ||||||| |||| | |||||||| || |
Sbjct: 35651615 aagaaatgctaataggcagagaaaatcctcaaggagccagagtggctggcctatat---c 35651671
Query: 1156 cctgacctggccttggaggagaagaacaaaggcaatgaatgttttcagaaaggggattat 1215
|||| |||||| || |||||||||||||||||||| ||| |||||||||||||| |||
Sbjct: 35651672 cctggcctggcttt---ggagaagaacaaaggcaatgcatgctttcagaaaggggactat 35651728
Query: 1216 ccccaggccatgaagcattatacagaagccatcaaacg-gaacccaaaagatgccaaatt 1274
||||| ||| |||| | ||| |||||||||||||| | |||||||| ||||||||| ||
Sbjct: 35651729 tcccagaccaggaagtagtatgcagaagccatcaaatgagaacccaagagatgccaagtt 35651788
Query: 1275 atacagcaatcgagctgcctgctacaccaaactcttggagttccaactggcgctcaagga 1334
||||||||| ||||||||||| | ||||| ||| ||| || ||| | ||| |||
Sbjct: 35651789 gtacagcaatgaagctgcctgctcctttgaactcctggggtttcagctgccactctggga 35651848
Query: 1335 ctgtgaggagtgcatccagctagaacctaccttcatcaagggctatacccggaaagcagc 1394
||||||||| || ||||| ||||||| | ||||| |||| | ||||| ||||| ||||
Sbjct: 35651849 ctgtgaggaatgtatccaagtagaaccaagcttcaccaagtgttatacatggaaatcagc 35651908
Query: 1395 tgccct 1400
||||||
Sbjct: 35651909 tgccct 35651914
Score = 97.6 bits (49), Expect = 2e-17
Identities = 137/165 (83%), Gaps = 1/165 (0%)
Strand = Plus / Plus
Query: 1582 atgagtgacccagccatgcggctcatcctggaacagatgcagaagga-ccctcaggcgct 1640
||||||||||||| ||||| | |||| |||||||||||||||||||| ||| |||| ||
Sbjct: 35652060 atgagtgacccagtcatgcagttcattctggaacagatgcagaaggaccccccaggtact 35652119
Query: 1641 cagcgaacacctaaagaatcctgtaatagcgcagaagatccagaagctgatggacgtggg 1700
| || |||| | ||||||||| ||||||| |||||||| ||||| || ||||| |||||
Sbjct: 35652120 cggcagacactttaagaatcctataatagcacagaagatacagaaactaatggatgtggg 35652179
Query: 1701 tctgatcgcaattcggtgatgacatgttcgtcatcccccttccct 1745
||||| ||||||| ||||||| || | ||||| |||||||||
Sbjct: 35652180 tctgactgcaattcactgatgacttgcttatcatctcccttccct 35652224
Score = 93.7 bits (47), Expect = 4e-16
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 704 aaaaggagcccaagccagagcccatggaagaagatcttccagagaataagaagcaggccc 763
|||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||| |
Sbjct: 35650993 aaaaggagaccaagccagagccaatggaagaagatcttccagagaatgagcagcaggcac 35651052
Query: 764 tgaaaga 770
|||||||
Sbjct: 35651053 tgaaaga 35651059
Score = 67.9 bits (34), Expect = 2e-08
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 1001 gaattggcaactcctacttcaaagaagaaaagtacaaggatgccatccatttct 1054
||||||||| |||||| |||| ||||||||||| | ||||||||||||||||||
Sbjct: 35651285 gaattggcagctcctatttcacagaagaaaagtgccaggatgccatccatttct 35651338
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 51,138,220
Number of extensions: 336
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 23
Length of query: 1977
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1955
Effective length of database: 2,808,408,574
Effective search space: 5490438762170
Effective search space used: 5490438762170
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)